Citrus Sinensis ID: 008896
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYR6 | 624 | Probable peptide/nitrate | yes | no | 0.959 | 0.844 | 0.698 | 0.0 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.846 | 0.815 | 0.376 | 1e-105 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.856 | 0.824 | 0.367 | 2e-98 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.848 | 0.796 | 0.364 | 1e-96 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.857 | 0.798 | 0.360 | 1e-92 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.777 | 0.783 | 0.329 | 3e-80 | |
| Q9SZY4 | 577 | Nitrate transporter 1.4 O | no | no | 0.863 | 0.821 | 0.348 | 6e-78 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.854 | 0.786 | 0.316 | 3e-75 | |
| Q9FNL7 | 582 | Peptide transporter PTR3- | no | no | 0.890 | 0.840 | 0.314 | 7e-74 | |
| P0CI03 | 575 | Putative peptide/nitrate | no | no | 0.826 | 0.789 | 0.319 | 2e-73 |
| >sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/614 (69%), Positives = 479/614 (78%), Gaps = 87/614 (14%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---------- 410
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 411 ---------------------------GHPRGASQLQRVGIGLAVSILSVIWA------- 436
G+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 437 -----------------------------------------GLLEFLYEEAPDAMKSIGS 455
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 456 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 515
AYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINTGRFD LYWLL +LS +NF
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNF 598
Query: 516 CAFLYSAYRYKYRS 529
C FL+SA+RYKYR+
Sbjct: 599 CVFLWSAHRYKYRA 612
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/563 (37%), Positives = 308/563 (54%), Gaps = 98/563 (17%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++ A ++N V
Sbjct: 13 VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P N D
Sbjct: 72 TNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD- 130
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K FF
Sbjct: 131 ------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR + PGGS
Sbjct: 184 NWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ + DKAA+E
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVES 302
Query: 352 KEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V Q TM+
Sbjct: 303 QSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQ 362
Query: 409 HMG--------------------------------------HPRGASQLQRVGIGLAVSI 430
HMG + RG +QLQR+GIGL VSI
Sbjct: 363 HMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSI 422
Query: 431 LSVIWAGL---------------------------------------------LEFLYEE 445
++I AG+ LEF Y++
Sbjct: 423 FAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQ 482
Query: 446 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYW 505
APDAM+S+ SA + LG + +++L +++ +T K G+P W+ N+N G DY ++
Sbjct: 483 APDAMRSLCSALSLTTVALGNYLSTVLVTVVMKIT--KKNGKPGWIPDNLNRGHLDYFFY 540
Query: 506 LLAVLSVINFCAFLYSAYRYKYR 528
LLA LS +NF +L+ + RYKY+
Sbjct: 541 LLATLSFLNFLVYLWISKRYKYK 563
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 209/569 (36%), Positives = 300/569 (52%), Gaps = 99/569 (17%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+ +S +V
Sbjct: 14 LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSV 72
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P C
Sbjct: 73 SNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT---CS- 128
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
G A + Q + LY+ G GI+PCVSSFGADQFD+ + K FF
Sbjct: 129 -----GETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR + PGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VA+ RK E + LYE S+I GS K+ HT DKAA+E
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302
Query: 352 KED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V Q T++
Sbjct: 303 ESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQ 362
Query: 409 HM--------------------------------------GHPRGASQLQRVGIGLAVSI 430
HM GH RG +QLQR+GIGL +SI
Sbjct: 363 HMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISI 422
Query: 431 LSVIWAGL---------------------------------------------LEFLYEE 445
S++ AG+ LEF Y++
Sbjct: 423 FSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQ 482
Query: 446 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYW 505
APDAM+S+ SA + A G + ++ L +++ VT + G+P W+A+N+N G DY +W
Sbjct: 483 APDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRS--GGRPGWIAKNLNNGHLDYFFW 540
Query: 506 LLAVLSVINFCAFLYSAYRYKYRSEQKHG 534
LLA LS +NF +L+ A Y Y+ H
Sbjct: 541 LLAGLSFLNFLVYLWIAKWYTYKKTTGHA 569
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 205/563 (36%), Positives = 300/563 (53%), Gaps = 97/563 (17%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGH-------------------------------------PRGASQLQRVGIGLAVSIL 431
+G +G +++QR+GIGL VS+L
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440
Query: 432 ------------------------------SVIWA----------------GLLEFLYEE 445
SV+W G LEF Y++
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500
Query: 446 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYW 505
+PDAM+S+ SA A L LG + +S++ +++ T + GQ W++ N+N+G DY +W
Sbjct: 501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT--TRNGQEGWISDNLNSGHLDYFFW 558
Query: 506 LLAVLSVINFCAFLYSAYRYKYR 528
LLA LS++N + +SA RYK +
Sbjct: 559 LLAGLSLVNMAVYFFSAARYKQK 581
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 341 bits (874), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 202/561 (36%), Positives = 296/561 (52%), Gaps = 90/561 (16%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E +N L G+ ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 24 EVNNHLTGLSSTAEDGS--IDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMNTHM-------------------------------------G 411
+V+ ++ TL VQQ +MN + G
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434
Query: 412 HPRGASQLQRVGIGLAVSILSV-------------------------------------- 433
P+G + LQR+GIGL +S+LS+
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDFVAMSIFWQIPQYILMGIAEVF 494
Query: 434 IWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 493
+ G +EF Y+E+PDAM+S+ SA A L +G + +S++ +++ T G+ W+
Sbjct: 495 FFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTA--LGGKDGWVPD 552
Query: 494 NINTGRFDYLYWLLAVLSVIN 514
++N G DY +WLL L ++N
Sbjct: 553 DLNKGHLDYFFWLLVSLGLVN 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 300 bits (767), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 185/561 (32%), Positives = 279/561 (49%), Gaps = 134/561 (23%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++HG P TG W A FIF NE ER+AY+G++ N++T+ +H++ ++ V
Sbjct: 31 IDIHGNPPLK-QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G +ADAY GRYWTIA F+ IY G+ +TL A++ P
Sbjct: 90 MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKP------- 142
Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
++ +GS C PA Q L++ LY+ G GI+PCVSSFGADQFD+ + F
Sbjct: 143 -AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201
Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
FN+FY ++ +GA V+ T++V+IQ +GW F + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261
Query: 291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALE 350
SP+T V QVLVAA+RK + +VP + S +G
Sbjct: 262 SPITSVCQVLVAAYRKSN-----------LKVP-EDSTDEGDA----------------- 292
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
N +PWKLCTVTQVEEVK L+RLVPI A I+ +V+ ++ TL VQQ M +
Sbjct: 293 ------NTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTI 346
Query: 411 -------------------------------------GHPRGASQLQRVGIGLAVSILSV 433
G +G ++LQR+GIGL VS+LS+
Sbjct: 347 GLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSL 406
Query: 434 IWA----------------------------------------------GLLEFLYEEAP 447
+A G +EF YE++P
Sbjct: 407 TFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSP 466
Query: 448 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL-AQNINTGRFDYLYWL 506
D+M+S+ SA+A L LG + +S++ +++ ++ G+ W+ + NIN G DY +WL
Sbjct: 467 DSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS-----GKDCWIPSDNINNGHLDYFFWL 521
Query: 507 LAVLSVINFCAFLYSAYRYKY 527
L L +N F++ + +Y +
Sbjct: 522 LVSLGSVNIPVFVFFSVKYTH 542
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 202/580 (34%), Positives = 292/580 (50%), Gaps = 106/580 (18%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G + + + P C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRP--PTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I +I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGI----RIEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHMGH---PRGA---------------------------------SQLQRVGIGLAV 428
TM ++G P G+ S LQR+ IGL +
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVL 418
Query: 429 SI-------------LSV-----------------------------IWAGLLEFLYEEA 446
S LSV I+ G L+F ++
Sbjct: 419 STAGMAAAALVEQKRLSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQS 478
Query: 447 PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWL 506
P MK++ + LG F +S L SI+K VT WLA NIN GR DY YWL
Sbjct: 479 PKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTST--DVGWLADNINHGRLDYFYWL 536
Query: 507 LAVLSVINF-----CAFLYSAYRYKYRSEQKHGNDYEVME 541
L +LS INF CA + + K E+++G + V +
Sbjct: 537 LVILSGINFVVYIICALWFKPTKGKDSVEKENGKGFSVED 576
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 181/571 (31%), Positives = 274/571 (47%), Gaps = 102/571 (17%)
Query: 53 NVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN 112
+HG+P GG I FIF NE+ E++A G NM++++ +H ++N +
Sbjct: 15 QLHGRPN---RPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71
Query: 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172
NF G S + +LG F+AD++ GR+WTI + IY G+T +T+ A + P + +
Sbjct: 72 NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131
Query: 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232
C A + Q+ LY L + G+ GIRPCV +FGADQFDE + T +FN
Sbjct: 132 ------CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFN 185
Query: 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSP 292
++Y + ++A T++V+IQ GWG G +AM +S + F G LYRH +P GSP
Sbjct: 186 WYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSP 245
Query: 293 LTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELK 352
TR+ QV VAAFRKR S + LY + I GK+ HT LDKAA+ +
Sbjct: 246 FTRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTE 304
Query: 353 EDVIN----PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
ED + P+ W+L TV +VEE+K+++R+ PI A I+L + T S+QQA TMN
Sbjct: 305 EDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNR 364
Query: 409 HM--------------------------------------GHPRGASQLQRVGIGLAVSI 430
H+ G RG + L R+GIG +SI
Sbjct: 365 HLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISI 424
Query: 431 LSVIWAGL-----------------------------------------------LEFLY 443
++ + AG LEF Y
Sbjct: 425 IATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFY 484
Query: 444 EEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDY 502
++AP++M+S +A +A +G + +++L +++ + P NWL N+N GR +Y
Sbjct: 485 DQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGS--NWLPDNNLNRGRLEY 542
Query: 503 LYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 533
YWL+ VL +N +L+ A Y Y+ Q H
Sbjct: 543 FYWLITVLQAVNLVYYLWCAKIYTYKPVQVH 573
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 185/588 (31%), Positives = 286/588 (48%), Gaps = 99/588 (16%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G P+ S G W A F+ E+ ERMAY+G+S N+ +M +
Sbjct: 6 VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ DA LGRY T I IY +G+ +TL T+
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + + + +CE A Q+ + LY G G +P +S+ GADQFD
Sbjct: 124 GIKPPECSTTNVE----NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
KT FFN++ S+ G + A T++VY+Q GW +G + + IS +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
P YRH+LP GSP T++A+V+VA+FRK +A + ++ +E+P KG+ I T
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDITSFHELPSLEYERKGAFPIHPTPS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R LD+A+L+ + W LCT T+VEE K ++R++P+ T + +++L + TL V
Sbjct: 299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354
Query: 401 QQAYTMNTHM--------------------------------------GHPRGASQLQRV 422
+Q T++ + G+PRG + LQR+
Sbjct: 355 KQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRM 414
Query: 423 GIGLAVSILSVIWAGL-------------------------------------------- 438
GIGL IL +I A +
Sbjct: 415 GIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLE 474
Query: 439 ---LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 495
LEF Y++AP++MKS+G++Y+ + +G F +S L S + +T KK W+ N+
Sbjct: 475 VAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEIT---KKRGRGWILNNL 531
Query: 496 NTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 543
N R DY Y AVL+++NF FL Y YR+E D + +E K
Sbjct: 532 NESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579
|
Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 175/548 (31%), Positives = 274/548 (50%), Gaps = 94/548 (17%)
Query: 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
++TG W AALFI E +ER++YFGL+ N+V ++ ++++ + VN + G++
Sbjct: 37 ARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMP 96
Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182
+LGGF+ADAYLGRY T+ + TTIYL GL + TM F+P C + EP
Sbjct: 97 LLGGFIADAYLGRYATVLVATTIYLMGL----VLLTMSWFIPGLKPCHQEV----CVEPR 148
Query: 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242
K+ ++ + + +Y+ G G +P + SFGADQFD+ + + FFN++ +S+ G
Sbjct: 149 KAHEVAF-FIAIYLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAGI 207
Query: 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA 302
+ A T V YI+ GWG A L + M IS ++FFIG P YR+R P GSPLT + QV VA
Sbjct: 208 LTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVA 267
Query: 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGK-IAHTDDFRCLDKAALELKEDVI---NP 358
A KR+ + S + L+EV SG+ + HT+ + LDKAA+ ++ +
Sbjct: 268 AIAKRNLPYPSDPSL-LHEVSKTEFT---SGRLLCHTEHLKFLDKAAIIEDKNPLALEKQ 323
Query: 359 SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG------- 411
SPW+L T+T+VEE K ++ ++PI T+ + T+ T ++QA TM+ H+G
Sbjct: 324 SPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGGFTVPPA 383
Query: 412 ------------------------------HPRGASQLQRVGIGLAVSI----------- 430
+ RG + LQR+G G+ S+
Sbjct: 384 SMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALVEK 443
Query: 431 -----------LSVIW----------------AGLLEFLYEEAPDAMKSIGSAYAALAGG 463
+SVIW GL E+ Y + PD+M+S+G A+ G
Sbjct: 444 QRLDRTNNNKPMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIG 503
Query: 464 LGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 523
F ++L + + ++ N +W +++N+ R D YW LA + N C F+ A
Sbjct: 504 AASFLNNLLITAVDTLAEN--FSGKSWFGKDLNSSRLDRFYWFLAGVIAANICVFVIVAK 561
Query: 524 RYKYRSEQ 531
R Y+S Q
Sbjct: 562 RCPYKSVQ 569
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| 224053581 | 638 | predicted protein [Populus trichocarpa] | 0.987 | 0.849 | 0.735 | 0.0 | |
| 296085541 | 606 | unnamed protein product [Vitis vinifera] | 0.989 | 0.896 | 0.740 | 0.0 | |
| 225425292 | 640 | PREDICTED: probable peptide/nitrate tran | 0.989 | 0.848 | 0.700 | 0.0 | |
| 449468910 | 637 | PREDICTED: probable peptide/nitrate tran | 0.990 | 0.854 | 0.697 | 0.0 | |
| 356569101 | 631 | PREDICTED: probable peptide/nitrate tran | 0.970 | 0.844 | 0.702 | 0.0 | |
| 357501519 | 638 | Peptide transporter-like protein [Medica | 0.970 | 0.835 | 0.689 | 0.0 | |
| 147771745 | 612 | hypothetical protein VITISV_040927 [Viti | 0.948 | 0.851 | 0.695 | 0.0 | |
| 147866216 | 626 | hypothetical protein VITISV_008303 [Viti | 0.967 | 0.848 | 0.688 | 0.0 | |
| 297811451 | 625 | proton-dependent oligopeptide transport | 0.959 | 0.843 | 0.700 | 0.0 | |
| 15240621 | 624 | putative peptide/nitrate transporter [Ar | 0.959 | 0.844 | 0.698 | 0.0 |
| >gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/632 (73%), Positives = 504/632 (79%), Gaps = 90/632 (14%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
MGS EIKSPE L ETPAT S+ KKL +YF+ESDNRRMA GRGYTGGTTPV++HG
Sbjct: 1 MGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFY+MH+ F SSNAVNNFLG
Sbjct: 61 KPIPDLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQ SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +FMP+Q CD++S LL
Sbjct: 121 ISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
G+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYL
Sbjct: 181 GNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHTDDFRCLDKAAL+LKED +
Sbjct: 301 AQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGV 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
+PSPW+LCTVTQVEEVK L++LVPIPACTIMLN+ILTE+LTLSVQQAYT+NTH+
Sbjct: 361 DPSPWRLCTVTQVEEVKILIKLVPIPACTIMLNLILTEYLTLSVQQAYTLNTHLGHLKLP 420
Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWA--- 436
GHPRGASQLQRVGIGLA SILSV WA
Sbjct: 421 VTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQRVGIGLAFSILSVAWAAIF 480
Query: 437 ---------------------------------------------GLLEFLYEEAPDAMK 451
GLLEFLYEEAPDAMK
Sbjct: 481 ERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 540
Query: 452 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 511
SIGSAYAALAGG+GCFAASILNSI+KSVTGNP K Q +WL+QNINTGRF+Y YWLL VLS
Sbjct: 541 SIGSAYAALAGGIGCFAASILNSIVKSVTGNPDKRQQSWLSQNINTGRFEYFYWLLTVLS 600
Query: 512 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 543
INFCAFLYSA RYKYR+EQK G EV+ NK
Sbjct: 601 AINFCAFLYSARRYKYRAEQKFGIQ-EVVTNK 631
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/598 (74%), Positives = 490/598 (81%), Gaps = 55/598 (9%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWA--- 436
GHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGYC 480
Query: 437 -----------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK 485
GLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++
Sbjct: 481 LIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQ 540
Query: 486 GQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 543
P+WL+QNINTGRFDYLYWLL V SVINFC FLYSA RYKYR Q+ + E + K
Sbjct: 541 MHPSWLSQNINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 598
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/632 (70%), Positives = 490/632 (77%), Gaps = 89/632 (14%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWA--- 436
GHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 480
Query: 437 ---------------------------------------------GLLEFLYEEAPDAMK 451
GLLEFLYEEAPDAM+
Sbjct: 481 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 540
Query: 452 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 511
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINTGRFDYLYWLL V S
Sbjct: 541 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 600
Query: 512 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 543
VINFC FLYSA RYKYR Q+ + E + K
Sbjct: 601 VINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 632
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/637 (69%), Positives = 493/637 (77%), Gaps = 93/637 (14%)
Query: 1 MGSREIKSPESLQETPAT------SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNV 54
MGSREIKS + ETP S S QRKKL ++FIESD+RR A GRGYTGGTTPVN+
Sbjct: 1 MGSREIKSLHEVNETPVLGRLDEHSESFQRKKLGMFFIESDDRRTAFGRGYTGGTTPVNI 60
Query: 55 HGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF 114
GKPIADLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH F SS+AVNNF
Sbjct: 61 RGKPIADLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNF 120
Query: 115 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174
LGISQASSVLGGFLADAYLGRYWTIAIFTTIYL GL GITLCAT+ F+PNQ CD++S
Sbjct: 121 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSL 180
Query: 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234
LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFF
Sbjct: 181 LLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFF 240
Query: 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294
YLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLT
Sbjct: 241 YLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLT 300
Query: 295 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED 354
RVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HTDDFRCLDKAAL+LKED
Sbjct: 301 RVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKED 360
Query: 355 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---- 410
NPSPWKLCTVTQVEEVK L++L+PIPACTIMLN++LTE+LTLSVQQAYTMNTH+
Sbjct: 361 GGNPSPWKLCTVTQVEEVKILLKLIPIPACTIMLNLVLTEYLTLSVQQAYTMNTHIGRLK 420
Query: 411 ---------------------------------GHPRGASQLQRVGIGLAVSILSVIWA- 436
GHP GASQLQRVGIGLA+SILSV WA
Sbjct: 421 LPVTCMPVFPGLSIFLILSLYYSVFVPLSRRITGHPHGASQLQRVGIGLAISILSVAWAG 480
Query: 437 -----------------------------------------------GLLEFLYEEAPDA 449
GLLEFLYEEAPDA
Sbjct: 481 AFERYRRNFAIRSGYEASFLSPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 540
Query: 450 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAV 509
MKSIGSAYAALAGGLGCFAAS+LNSIIKSVTG+P P+WL+QNINTGRFDY YWLL V
Sbjct: 541 MKSIGSAYAALAGGLGCFAASLLNSIIKSVTGSPNGRNPSWLSQNINTGRFDYFYWLLTV 600
Query: 510 LSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYD 546
+S+INFC FLYSA++YKYR + + G +MEN ++D
Sbjct: 601 MSIINFCIFLYSAHKYKYRKDHEVGEG--IMENGMHD 635
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/618 (70%), Positives = 477/618 (77%), Gaps = 85/618 (13%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M S EIKSP + +S +RKKL++YFIES++RRMA GRGYT G+TPV++HGK I
Sbjct: 1 MDSSEIKSPAEGSQQGTPGNSLRRKKLAIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIV 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 DLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT+ F+PNQ+ CD+ S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+
Sbjct: 181 AAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTI 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDFR LDKAAL+LKED NPSP
Sbjct: 301 VAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKEDGANPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---------- 410
W+LCTVTQVEEVK L++L+PIPACTIMLNV+LTEFLTLSVQQAYT+NTH+
Sbjct: 361 WRLCTVTQVEEVKILMKLIPIPACTIMLNVVLTEFLTLSVQQAYTLNTHLGRLKLPVTCM 420
Query: 411 ---------------------------GHPRGASQLQRVGIGLAVSILSVIWA------- 436
GHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 PVFPGLSVFLILSLYYSIFVPVFRRITGHPHGASQLQRVGIGLAVSILSVAWAAIFERYR 480
Query: 437 -----------------------------------------GLLEFLYEEAPDAMKSIGS 455
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RNYAIKHGYLASFLTAMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 456 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 515
AYAALAGGLGCF A+I+N+IIKS TGN KGQP+WL+QNINTGRFDY YWLL LS+INF
Sbjct: 541 AYAALAGGLGCFVATIINNIIKSATGNLDKGQPSWLSQNINTGRFDYFYWLLTALSIINF 600
Query: 516 CAFLYSAYRYKYRSEQKH 533
F+YSA+RYKYR Q H
Sbjct: 601 AIFVYSAHRYKYREHQVH 618
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/628 (68%), Positives = 485/628 (77%), Gaps = 95/628 (15%)
Query: 1 MGSREIKSPESLQE-TPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPI 59
M + EIKSPE+ Q+ TP TS S RKKL ++FIES++RRMALGRGYT G+TPVN+HGK I
Sbjct: 1 MDTCEIKSPEAPQQGTPCTSMS--RKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSI 58
Query: 60 ADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQ 119
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQ
Sbjct: 59 EDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQ 118
Query: 120 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+C
Sbjct: 119 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNC 178
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT
Sbjct: 179 EPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVT 238
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQV
Sbjct: 239 IGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQV 298
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAA+RKR +F +SE++GLYEVPG+ SAIKGS KIAHTDDFR LDKAAL+LK+D NPS
Sbjct: 299 LVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPS 358
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM--------- 410
W LCTVTQVEEVK L++L+PIPACTIMLNVILTEFLTLSVQQAYT+NTH+
Sbjct: 359 QWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTC 418
Query: 411 ----------------------------GHPRGASQLQRVGIGLAVSILSVIWA------ 436
GHP GASQLQR+GIGL VSILSV WA
Sbjct: 419 MPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKY 478
Query: 437 ------------------------------------------GLLEFLYEEAPDAMKSIG 454
GLLEFLYEEAPDAMKSIG
Sbjct: 479 RRNYAIKNEFEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIG 538
Query: 455 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 514
SAYAALAGGLGCF A+ +NS++KS TGN K Q +WL+QNINTG+FDY YW+L LS++N
Sbjct: 539 SAYAALAGGLGCFFATFINSVVKSATGNSDKRQESWLSQNINTGKFDYFYWVLTALSLVN 598
Query: 515 FCAFLYSAYRYKYRSEQ-------KHGN 535
FC FLYSA+RYKYR++ KH N
Sbjct: 599 FCIFLYSAHRYKYRTQHVYEMESIKHDN 626
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/620 (69%), Positives = 476/620 (76%), Gaps = 99/620 (15%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFR +D
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFR----------KDGA 350
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+
Sbjct: 351 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 410
Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWA--- 436
GHP GASQLQRVGIGLAVSILSV WA
Sbjct: 411 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 470
Query: 437 ---------------------------------------------GLLEFLYEEAPDAMK 451
GLLEFLYEEAPDAM+
Sbjct: 471 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 530
Query: 452 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 511
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINTGRFDYLYWLL V S
Sbjct: 531 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 590
Query: 512 VINFCAFLYSAYRYKYRSEQ 531
VINFC FLYSA RYKYR+ Q
Sbjct: 591 VINFCIFLYSAQRYKYRAFQ 610
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/627 (68%), Positives = 478/627 (76%), Gaps = 96/627 (15%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DL K + GNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLFKD-------WRLGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 113
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 114 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 173
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 174 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 233
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 234 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 293
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 294 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 353
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+
Sbjct: 354 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 413
Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWA--- 436
GHP GASQLQRVGIGLAVSILSV WA
Sbjct: 414 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 473
Query: 437 ---------------------------------------------GLLEFLYEEAPDAMK 451
GLLEFLYEEAPDAM+
Sbjct: 474 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 533
Query: 452 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 511
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINTGRFDYLYWLL V S
Sbjct: 534 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 593
Query: 512 VINFCAFLYSAYRYKYRSEQKHGNDYE 538
VINFC FLYSA RYKYR Q+ + E
Sbjct: 594 VINFCIFLYSAQRYKYRVAQEGTMEEE 620
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/615 (70%), Positives = 481/615 (78%), Gaps = 88/615 (14%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
SSVLGGFLADAYLGRYWTIAIFTT+YL L GITL A++K+F+P+Q NC ++S LLG+C
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNC 180
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT
Sbjct: 181 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVT 240
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQV
Sbjct: 241 LGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQV 300
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H+DDF LDKAAL+LKED + PS
Sbjct: 301 LVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPS 360
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM--------- 410
PWKLCTVTQVEEVK L+RL+PIPACTIML+++LTE+LTLSVQQAYT+NTH+
Sbjct: 361 PWKLCTVTQVEEVKILIRLIPIPACTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTC 420
Query: 411 ----------------------------GHPRGASQLQRVGIGLAVSILSVIWA------ 436
G+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 MPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENY 480
Query: 437 ------------------------------------------GLLEFLYEEAPDAMKSIG 454
GLLEFLYEEAPDAMKSIG
Sbjct: 481 RRHYAIQHGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 540
Query: 455 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 514
SAYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINTGRFD LYWLL +LS +N
Sbjct: 541 SAYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLN 598
Query: 515 FCAFLYSAYRYKYRS 529
FC FL+SA+RYKYR+
Sbjct: 599 FCVFLWSAHRYKYRA 613
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/614 (69%), Positives = 479/614 (78%), Gaps = 87/614 (14%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---------- 410
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 411 ---------------------------GHPRGASQLQRVGIGLAVSILSVIWA------- 436
G+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 437 -----------------------------------------GLLEFLYEEAPDAMKSIGS 455
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 456 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 515
AYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINTGRFD LYWLL +LS +NF
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNF 598
Query: 516 CAFLYSAYRYKYRS 529
C FL+SA+RYKYR+
Sbjct: 599 CVFLWSAHRYKYRA 612
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| TAIR|locus:2181655 | 624 | AT5G13400 [Arabidopsis thalian | 0.794 | 0.698 | 0.789 | 6.5e-212 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.648 | 0.624 | 0.437 | 5e-104 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.697 | 0.671 | 0.403 | 1.3e-99 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.684 | 0.642 | 0.408 | 1.1e-96 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.668 | 0.622 | 0.430 | 1.4e-94 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.630 | 0.599 | 0.411 | 2.2e-80 | |
| TAIR|locus:2084500 | 602 | AT3G53960 [Arabidopsis thalian | 0.610 | 0.556 | 0.376 | 3.4e-76 | |
| TAIR|locus:2008855 | 590 | NRT1.1 "nitrate transporter 1. | 0.635 | 0.591 | 0.396 | 2.5e-75 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.632 | 0.582 | 0.382 | 6.7e-75 | |
| TAIR|locus:2025886 | 591 | AT1G59740 [Arabidopsis thalian | 0.642 | 0.597 | 0.360 | 1.3e-74 |
| TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1795 (636.9 bits), Expect = 6.5e-212, Sum P(2) = 6.5e-212
Identities = 345/437 (78%), Positives = 387/437 (88%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQ 420
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ H +
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 421 RVGIGLAVS-ILSVIWA 436
V GL++ ILS+ ++
Sbjct: 421 PVFPGLSIFLILSLYYS 437
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 5.0e-104, Sum P(3) = 5.0e-104
Identities = 162/370 (43%), Positives = 229/370 (61%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++
Sbjct: 7 YTQDGT-VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
A ++N V N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P
Sbjct: 65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
N D +C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K
Sbjct: 125 GNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR
Sbjct: 177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ +
Sbjct: 237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFF 295
Query: 345 DKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V
Sbjct: 296 DKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVL 355
Query: 402 QAYTMNTHMG 411
Q TM+ HMG
Sbjct: 356 QGNTMDQHMG 365
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 1.3e-99, Sum P(3) = 1.3e-99
Identities = 162/401 (40%), Positives = 235/401 (58%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T +++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+
Sbjct: 8 YTKDGT-LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMEN 65
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
+S +V+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P
Sbjct: 66 VSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP 125
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
C +C A + Q + LY+ G GI+PCVSSFGADQFD+ + K
Sbjct: 126 T---CSG-----ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR
Sbjct: 177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VA+ RK E + LYE S+I GS K+ HT
Sbjct: 237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFF 295
Query: 345 DKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V
Sbjct: 296 DKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVL 355
Query: 402 QAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGLLEFL 442
Q T++ HMG P ++ + L ++ + WA + + L
Sbjct: 356 QGNTLDQHMG-PN--FKIPSASLSLFDTLSVLFWAPVYDKL 393
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 1.1e-96, Sum P(3) = 1.1e-96
Identities = 160/392 (40%), Positives = 230/392 (58%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGHPRGASQLQRVGIGLAVSILSVIWAGLLE 440
+G + QL +G + +IW L +
Sbjct: 381 KIG----SFQLPPAALGTFDTASVIIWVPLYD 408
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
Identities = 163/379 (43%), Positives = 230/379 (60%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E N + G T ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 23 EEVNNHLT-GLSSTAEDGSIDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C ++ L C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMN 407
+V+ ++ TL VQQ +MN
Sbjct: 375 SVLYSQISTLFVQQGRSMN 393
|
|
| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 151/367 (41%), Positives = 219/367 (59%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G TG AT K+ C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALG-TGALAVAT-KLPELRPPTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I+ I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHMG 411
TM ++G
Sbjct: 359 TMRRNIG 365
|
|
| TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 3.4e-76, Sum P(3) = 3.4e-76
Identities = 133/353 (37%), Positives = 203/353 (57%)
Query: 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
++TG W AALFI G E +ER++YFG+S N+V ++ ++H+ + N + G++
Sbjct: 36 AQTGAWRAALFIIGIEFSERLSYFGISTNLVVYLTTILHQDLKMAVKNTNYWSGVTTLMP 95
Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-EP 181
+LGGF+ADAYLGRY T+ + TTIYL GL I L T+ F+P C C EP
Sbjct: 96 LLGGFVADAYLGRYGTVLLATTIYLMGL--ILL--TLSWFIPGLKACHE-----DMCVEP 146
Query: 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241
K+ ++ + + +Y+ G G +P + SFGADQF++ + + +FN++ + G
Sbjct: 147 RKAHEIAF-FIAIYLISIGTGGHKPSLESFGADQFEDGHPEERKMKMSYFNWWNAGLCAG 205
Query: 242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV 301
+ A T++VYI+ GWG A L I M S +F IG P YR+R P GSPLT + QV V
Sbjct: 206 ILTAVTVIVYIEDRIGWGVASIILTIVMATSFFIFRIGKPFYRYRAPSGSPLTPMLQVFV 265
Query: 302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL--ELKEDVI--N 357
AA KR+ S + L+E+ + KG ++ + + + LDKAA+ + E+
Sbjct: 266 AAIAKRNLPCPSDSSL-LHELTNEEYT-KGR-LLSSSKNLKFLDKAAVIEDRNENTKAEK 322
Query: 358 PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
SPW+L TVT+VEEVK L+ ++PI T+ V T+ TL ++QA M+ H+
Sbjct: 323 QSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHI 375
|
|
| TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 632 (227.5 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 144/363 (39%), Positives = 209/363 (57%)
Query: 56 GKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL 115
G+P AD SKTGGW +A I E ER+ G+ VN+VT++ MH A ++N V NFL
Sbjct: 20 GRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFL 78
Query: 116 GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175
G S +LGGF+AD +LGRY TIAIF I G++ +TL + P + N S
Sbjct: 79 GTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH- 137
Query: 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235
CE A Q+ LY LY+T G G++ VS FG+DQFDE ++ + FFN F+
Sbjct: 138 ---CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194
Query: 236 LSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
+ VG+++A T++VY+Q + G WG A AI + +S +F GT YR + GSP+
Sbjct: 195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIGSPM 252
Query: 294 TRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
T+VA V+VAA+R R + S L + ++ ++KG K+ HT+ FR LDKAA+
Sbjct: 253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRD 312
Query: 352 KEDVINPS---PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E + + W L T+T VEEVK +VR++PI A I+ + + TLSV Q+ T++
Sbjct: 313 QEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDR 372
Query: 409 HMG 411
+G
Sbjct: 373 SIG 375
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| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 138/361 (38%), Positives = 202/361 (55%)
Query: 54 VHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNN 113
+HG+P + K GG I FIF NE+ E++A G NM++++ +H ++N + N
Sbjct: 16 LHGRP--NRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTN 72
Query: 114 FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173
F G S + +LG F+AD++ GR+WTI + IY G+T +T+ A + P + +
Sbjct: 73 FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV- 131
Query: 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233
C A + Q+ LY L + G+ GIRPCV +FGADQFDE + T +FN+
Sbjct: 132 -----CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNW 186
Query: 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
+Y + ++A T++V+IQ GWG G +AM +S + F G LYRH +P GSP
Sbjct: 187 YYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPF 246
Query: 294 TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKE 353
TR+ QV VAAFRKR S + LY + I GK+ HT LDKAA+ +E
Sbjct: 247 TRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEE 305
Query: 354 DVINPS--P--WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409
D + P P W+L TV +VEE+K+++R+ PI A I+L + T S+QQA TMN H
Sbjct: 306 DNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRH 365
Query: 410 M 410
+
Sbjct: 366 L 366
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| TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 1.3e-74, Sum P(3) = 1.3e-74
Identities = 131/363 (36%), Positives = 204/363 (56%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P ++ +K GG AALF+ G + E M + N++T++ MH + ++N V
Sbjct: 30 VDWRGRP-SNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAANIV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
NF+G ++LGG+L+DA+LG +WTI IF + L+G +++ A + P + N
Sbjct: 89 TNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCN-PL 147
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I Q +CE AK ++ + + LY+ G+ ++P + + GADQF + L +F
Sbjct: 148 IDQ---TCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYF 204
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N Y + ++G ++A TL+V++Q G FG A AM + + GT +R++ P S
Sbjct: 205 NAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRS 264
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSE--LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL 349
T +A V+VAA KR A S L G + V + S + HT FR LDKA +
Sbjct: 265 IFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVAND---VVPSSTLPHTPRFRFLDKACI 321
Query: 350 ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409
++++ SPW+LCTVTQVE+VKTL+ LVPI A TI+ N IL + T SVQQ +MNT
Sbjct: 322 KIQDTNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTR 381
Query: 410 MGH 412
+ +
Sbjct: 382 LSN 384
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYR6 | PTR49_ARATH | No assigned EC number | 0.6986 | 0.9599 | 0.8445 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.I.7989.1 | hypothetical protein (618 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 549 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 4e-44 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-18 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-07 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 2e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-05 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 4e-44
Identities = 79/313 (25%), Positives = 133/313 (42%), Gaps = 40/313 (12%)
Query: 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 195
+ TI + + IY G +TL A P Q + Y LY
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40
Query: 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255
+ G GI+P VS+FGADQFDE + D FF++FY S+ G+++A + Y+Q
Sbjct: 41 LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97
Query: 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 313
G+ FG A+ M ++ ++F +G+ Y+ + P GGSP T +A ++ AA + R
Sbjct: 98 VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157
Query: 314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373
LY K++ S HT A + + V ++
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LFDQQGSVWLLQ 207
Query: 374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG--HPRGASQLQ---RVGIGLAV 428
++ ++PI A I+ + + T+ TL V+Q TM+ + + Q + + + +
Sbjct: 208 AILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILL 267
Query: 429 SILSVIWAGLLEF 441
IL + LL
Sbjct: 268 PILDFLVYPLLRL 280
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 4e-18
Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLA 129
IF E+ ER +Y+G+ ++ +++Y + ++ + + + + ++GG+LA
Sbjct: 26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85
Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
D LG TI + + G + + +
Sbjct: 86 DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-------------------------- 119
Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
LY L + G +P +SS + + + D F FY+ + +G+++A +
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175
Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
+ + +GW FG A+ M I ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205
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Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 34/227 (14%)
Query: 92 MVTFMF-YVMHKSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147
M T + Y+++ + A N F + + ++G +AD++LG++ TI + +Y+
Sbjct: 6 MKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYV 65
Query: 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207
G +L A + P D L+G L + G GI+PC
Sbjct: 66 VGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGIKPC 105
Query: 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHGWGS 260
VS+FG DQF+ER + RFF+FFY ++ G++ + + V + +
Sbjct: 106 VSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162
Query: 261 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307
AFG I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209
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[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 36/211 (17%)
Query: 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA 131
L +F + LS + + S + + V+ F S+L G+L+D
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
+ GR + + ++ G + A S +L +
Sbjct: 61 F-GRRRVLLLGLLLFALGSLLLAF--------------------------ASSLWLLLVG 93
Query: 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251
L G G + P ++ A+ F + R F +GA++ L
Sbjct: 94 RFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGL 145
Query: 252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
+ GW F LAI + +L L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLRL 176
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 39/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADA 131
+F E+ ER +Y+G+ + ++ F+ + + + + +G + D
Sbjct: 15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
G T+ L GI L +LG A S +Y
Sbjct: 75 VWGTKKTMV---------LGGIVL-------------------MLGHFMLAMS---IYPD 103
Query: 192 TVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
+ Y G G+ + SS ++ + D F FY+S+ +G+ ++ L
Sbjct: 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLL 160
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
I +G+ F A+ M I + FF G + R
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)
Query: 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142
+ L + ++ + S + + F + L G L+D + GR + I
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68
Query: 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 202
++ GL + + S +L + VL G G
Sbjct: 69 LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100
Query: 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262
+ P ++ AD F R +GA + L + GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305
LAI ++ +L + P P LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.97 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.97 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.97 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.91 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.9 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.9 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.89 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.89 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.89 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.89 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.88 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.88 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.87 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.87 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.87 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.87 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.87 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.87 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.86 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.86 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.86 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.86 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.86 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.86 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.86 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.85 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.85 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.85 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.85 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.85 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.85 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.84 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.84 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.84 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.84 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.84 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.84 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.84 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.84 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.83 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.83 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.83 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.83 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.83 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.83 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.82 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.82 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.82 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.82 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.82 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.82 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.81 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.81 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.81 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.81 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.8 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.8 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.8 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.8 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.79 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.79 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.79 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.79 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.78 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.77 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.76 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.76 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.76 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.75 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.75 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.74 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.74 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.74 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.73 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.73 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.72 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.71 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.71 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.7 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.69 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.69 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.69 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.68 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.68 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.67 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.67 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.66 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.66 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.6 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.59 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.59 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.59 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.58 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.58 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.56 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.55 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.55 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.55 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.55 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.5 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.49 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.47 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.46 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.46 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.45 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.45 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.44 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.42 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.41 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.41 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.4 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.4 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.39 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.39 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.39 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.37 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.36 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.35 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.35 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.35 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.34 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.33 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.33 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.33 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.33 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.32 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.32 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.32 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.31 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.3 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.3 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.3 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.3 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.29 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.28 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.27 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.27 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.27 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.26 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.24 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.24 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.23 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.23 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.21 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.2 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.2 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.19 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.19 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.18 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.16 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.14 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.12 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.12 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.11 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.1 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.09 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.09 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.08 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.07 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.06 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.05 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.05 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.05 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.03 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.02 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.02 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.01 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.01 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.0 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.99 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.99 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.99 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.98 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.96 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.94 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.94 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.94 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.93 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.93 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.92 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.92 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.9 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.87 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.87 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.85 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.85 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.82 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.8 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.79 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.78 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.78 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.77 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.76 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.75 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.74 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.73 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.72 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.71 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.69 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.68 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.67 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.65 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.61 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.59 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.56 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.55 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.52 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.49 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.49 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.49 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.43 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.39 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.38 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.37 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.27 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.25 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.23 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.21 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.2 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.05 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.02 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.02 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.01 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.01 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.89 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.88 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.71 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.7 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.7 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.68 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.65 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.54 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.47 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.46 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.43 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.32 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.3 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.26 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.19 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.94 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.93 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.74 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.74 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.68 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.63 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.49 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.46 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 96.2 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.95 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 95.92 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.85 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 95.31 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.17 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 94.89 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.82 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.06 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 93.74 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 92.81 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.54 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 90.24 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 89.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 89.52 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 88.79 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.95 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 86.78 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 86.49 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 81.92 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=467.19 Aligned_cols=469 Identities=45% Similarity=0.750 Sum_probs=421.0
Q ss_pred CCccccCCCCCcccc---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHH
Q 008896 49 TTPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLG 125 (549)
Q Consensus 49 ~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~ 125 (549)
.+.+++++++. .+. +++.|+.+..++..+.++++++|++..+++.|+++++|.+...+...++.|.+...+.|+++
T Consensus 15 ~~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g 93 (571)
T KOG1237|consen 15 FTSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLG 93 (571)
T ss_pred cceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHH
Confidence 35567777666 554 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcc
Q 008896 126 GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205 (549)
Q Consensus 126 G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 205 (549)
+++||.|+||++++.++.+++++|+.++++++..+.+.|. .| ...+....|+.+.......++.++.+.++|.|+.+
T Consensus 94 ~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r 170 (571)
T KOG1237|consen 94 AFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR 170 (571)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence 9999999999999999999999999999999999998886 44 11112346999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008896 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (549)
Q Consensus 206 ~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~ 285 (549)
++..++.+||+++..+.+++.+.++|+|+|+..++|..++-.+..|++++.||.++|.++.+++++++++++.+.+.|++
T Consensus 171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~ 250 (571)
T KOG1237|consen 171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRY 250 (571)
T ss_pred CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEe
Confidence 99999999999988888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchhhHhhhhhccc---cCCCCCCc
Q 008896 286 RLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINPSPWK 362 (549)
Q Consensus 286 ~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~~~~~ 362 (549)
++|.++|+.++.+|++++.++|...++.++.. + +..........++++++++|+|+.+..++ ....+||+
T Consensus 251 ~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~ 323 (571)
T KOG1237|consen 251 KKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWR 323 (571)
T ss_pred eCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c------cccccccccccCCcccchhhHhhccCCcccccccccCCcc
Confidence 99999999999999999999999888776543 3 11112223344577899999999876543 23468999
Q ss_pred ccCchhHHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhhhccCC--------------------------------
Q 008896 363 LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-------------------------------- 410 (549)
Q Consensus 363 ~~~~~~ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~~~~~~-------------------------------- 410 (549)
+|+.++|||+|++++++|+|++.++++.++.|+.++++.|+..||+++
T Consensus 324 lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP 403 (571)
T KOG1237|consen 324 LCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVP 403 (571)
T ss_pred CCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehh
Confidence 999999999999999999999999999999999999999999999977
Q ss_pred ------CCCCCCCchHHHHHHHHHHHHHHHHH------------------------------------------HHHHHH
Q 008896 411 ------GHPRGASQLQRVGIGLAVSILSVIWA------------------------------------------GLLEFL 442 (549)
Q Consensus 411 ------~~~~~~~~l~~i~~G~~~~~~~~~~a------------------------------------------~~~~~~ 442 (549)
+++.+++.++|+++|+++.+++|..+ +.+||+
T Consensus 404 ~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFf 483 (571)
T KOG1237|consen 404 FARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFF 483 (571)
T ss_pred hhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 34457889999999999999998887 889999
Q ss_pred HhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccc-CCCcccchhHHHHHHHHHHHHHHHHHHhh
Q 008896 443 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFCAFLYS 521 (549)
Q Consensus 443 ~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~-~~~n~~~~~~~f~~~a~~~~~~~~~~~~~ 521 (549)
|+++|++||+.+++++.+..++|++++.+++.++...++ + ..+|++ +|+|.+|+++|||++++++.++.+.|.++
T Consensus 484 Y~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~ 559 (571)
T KOG1237|consen 484 YSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLIC 559 (571)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEE
Confidence 999999999999999999999999999999999998775 3 468999 99999999999999999999999999999
Q ss_pred hhccccccccC
Q 008896 522 AYRYKYRSEQK 532 (549)
Q Consensus 522 ~~~~~~~~~~~ 532 (549)
+++|+++..++
T Consensus 560 ~~~y~~~~~~~ 570 (571)
T KOG1237|consen 560 AKRYDYKDDKD 570 (571)
T ss_pred EEeeeeccccC
Confidence 99999886543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=288.56 Aligned_cols=393 Identities=18% Similarity=0.244 Sum_probs=301.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~----~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~ 138 (549)
...+++|.++.++.+++.||++|||+...+..|++.+++ ++++++..+.+.|....++.+++|||+|||++|+|++
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 445678899999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC
Q 008896 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 139 ~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
+..+.+++.+|.++++.+.. .....+++++.++++|+|++++++..+++|++|+
T Consensus 95 I~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~ 148 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK 148 (498)
T ss_pred HHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCC
Confidence 99999999999999987620 1355789999999999999999999999999999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccC--CCCChh---
Q 008896 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPL--- 293 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~--- 293 (549)
++++ |..+|+++|++.|+|+.++|.+.+++.++.||.++|.+.++.+.++++.++++++.+.... +...|+
T Consensus 149 ~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~ 224 (498)
T COG3104 149 DDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFN 224 (498)
T ss_pred CCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhh
Confidence 9976 9999999999999999999999999999999999999999999999999999987765443 211221
Q ss_pred ---hHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchh-hH----hhhhhccccCCCCCCcccC
Q 008896 294 ---TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DK----AALELKEDVINPSPWKLCT 365 (549)
Q Consensus 294 ---~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~----a~~~~~~~~~~~~~~~~~~ 365 (549)
.....+++...... .+ .. ...+..+.. .. ....+-.+ ...| .
T Consensus 225 ~~~~~~~~~~~~~~~~~--------~~---~~-------------l~~~~~~~~~~~~~i~~~~~~~~~---~~~~---~ 274 (498)
T COG3104 225 FLLPVLGGLVVMILAAL--------LT---LL-------------LNQNTFSGVLLVISILIAIIYFAE---AFRS---P 274 (498)
T ss_pred hhhhhHHHHHHHHHHHH--------HH---HH-------------HHHHHHHHHHHHHHHHHHHHHHHH---Hhcc---C
Confidence 11111111111110 00 00 000000000 00 00000000 0111 1
Q ss_pred chhHHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhh-hccC-----C----------------------------C
Q 008896 366 VTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTH-----M----------------------------G 411 (549)
Q Consensus 366 ~~~ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~-~~~~-----~----------------------------~ 411 (549)
+.+ +|+||++..+++++..++||+++.|.++.+..|+.. .|++ + +
T Consensus 275 ~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~ 353 (498)
T COG3104 275 KVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGR 353 (498)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhc
Confidence 123 789999999999999999999999999999888754 3444 1 3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhccchhHHHHHH
Q 008896 412 HPRGASQLQRVGIGLAVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSA 456 (549)
Q Consensus 412 ~~~~~~~l~~i~~G~~~~~~~~~~a-----------------------------------~~~~~~~~~~P~~~rg~~~g 456 (549)
+.+.++...|+++|++++++++++. ..++.+++++|++++|.+||
T Consensus 354 ~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma 433 (498)
T COG3104 354 GNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMA 433 (498)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHH
Confidence 4456888899999999999888775 67888899999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhccccc
Q 008896 457 YAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 528 (549)
Q Consensus 457 ~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~ 528 (549)
.+.+....|..++..+.+.... ++ +-.+..+...+|+.++.+.++..+......++.++.
T Consensus 434 ~wfLt~a~~~~l~g~va~~~~~-~~-----------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~ 493 (498)
T COG3104 434 MWFLTVAAGQTLGGQVAGLTAV-TD-----------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRM 493 (498)
T ss_pred HHHHHHHHHHHhhceecccccc-cc-----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 9999999999988888773211 11 001112345678888888887777777776665543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-30 Score=278.23 Aligned_cols=393 Identities=12% Similarity=0.153 Sum_probs=281.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+++||.++.+++.+++|++++|++..+++.|+++++|++..++.++.+.+....++.++++|+++||++||||+++++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999995599999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
++.++.++++++.. ....++++|+++|+|.|+..++..++++|++|+++++
T Consensus 90 ~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~-- 140 (489)
T PRK10207 90 VLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR-- 140 (489)
T ss_pred HHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh--
Confidence 99999999887521 1234568899999999999999999999999987622
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccccc--CCCCChhh--HHHH--
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLT--RVAQ-- 298 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~--~~~~-- 298 (549)
|++.+++++++.|+|..+||.+++++.++.|||+.|++..+..+++++.++..++.+++. ++++++.. ....
T Consensus 141 --~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~ 218 (489)
T PRK10207 141 --LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVL 218 (489)
T ss_pred --hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHH
Confidence 688999999999999999999999999999999999998776666666666655444332 22222221 1100
Q ss_pred --HHHHHHH-hhccccCCcccccccccCCCcccccCCcccccCCccchhhHhh------hhhccccCCCCCCcccCchhH
Q 008896 299 --VLVAAFR-KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LELKEDVINPSPWKLCTVTQV 369 (549)
Q Consensus 299 --v~~~a~~-~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~------~~~~~~~~~~~~~~~~~~~~v 369 (549)
....... ....... ++. .-.+.... ....+ ...+++
T Consensus 219 ~~~~~~~~~~~~~~~~~-~~~------------------------~~~~~~~~~i~~~~f~~~~----------~~~~~~ 263 (489)
T PRK10207 219 LGSVVMIFVCAWLMHNV-EVA------------------------NLVLIVLSIVVTIIFFREA----------FKLDKT 263 (489)
T ss_pred HHHHHHHHHHHHHHhhh-hHH------------------------HHHHHHHHHHHHHHHHHHH----------hcCCHH
Confidence 0000000 0000000 000 00000000 00000 011122
Q ss_pred HHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHh-hhccCC---------------------------------CCCCC
Q 008896 370 EEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHM---------------------------------GHPRG 415 (549)
Q Consensus 370 e~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~-~~~~~~---------------------------------~~~~~ 415 (549)
++++.+..+.+++..+++|..+.|..+.+..+.. .++... +++..
T Consensus 264 -~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~ 342 (489)
T PRK10207 264 -GRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKD 342 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3455566677778888899999998776665544 233321 34456
Q ss_pred CCchHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhccchhHHHHHHHHHH
Q 008896 416 ASQLQRVGIGLAVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSAYAAL 460 (549)
Q Consensus 416 ~~~l~~i~~G~~~~~~~~~~a-----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~ 460 (549)
++...|+.+|+++.+++++.+ ..++++++.+|++++|.++|+++.
T Consensus 343 ~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l 422 (489)
T PRK10207 343 LSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFL 422 (489)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 788899999988887776421 557788899999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhccccccccC
Q 008896 461 AGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQK 532 (549)
Q Consensus 461 ~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 532 (549)
...+|+.++..+...+.. + ....++.. .+..+..+|..+++++++..++++++.++.++..+++
T Consensus 423 ~~~ig~~lg~~l~~~~~~-~---~~~~~~~~----~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 486 (489)
T PRK10207 423 TQAAAFLLGGYVATFTAV-P---DNITDPLE----TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTP 486 (489)
T ss_pred HHHHHHHHHHHHHHHhcc-c---cccccchh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999988876532 0 00000100 0123677888888888888888888888777664444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-30 Score=276.18 Aligned_cols=386 Identities=14% Similarity=0.154 Sum_probs=276.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
.++++.++.+++.++++++++|++.++++.|++++ +|++..+++.+.+.+.++.+++++++|+++||++|||+++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 45677889999999999999999999999999988 9999999999999999999999999999999955999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
.+++.++.++++++ .+...+++++++.|+|.|+..++..++++|++|+++++
T Consensus 86 ~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~ 137 (475)
T TIGR00924 86 GIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP 137 (475)
T ss_pred HHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence 99999999888765 34566788999999999999999999999999876421
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHH-----
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA----- 297 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----- 297 (549)
.|+++++++|++.|+|..+||.+++++.++.||++.|++.++..+++++.+++.++.+++.++++++.+...
T Consensus 138 ---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (475)
T TIGR00924 138 ---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGK 214 (475)
T ss_pred ---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHH
Confidence 288899999999999999999999999999999999999887777776666666655554433222221100
Q ss_pred --HH----HHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchhhHhhhhhccccCCCCCCcccCchhHHH
Q 008896 298 --QV----LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEE 371 (549)
Q Consensus 298 --~v----~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~ 371 (549)
.. +....+.... ..++ . ..+.+.+ ....+...+.... ..+| ..+++ +
T Consensus 215 ~~~~~~~~~~~~~~~~~~-~~~~--~-------------~~~~~~~-----~~~~~~~~~~~~~-~~~~----~~~~~-~ 267 (475)
T TIGR00924 215 LLLALLAALALVFFCAWL-MHHV--V-------------IANILLM-----TVTLAVIIFFFRL-AFKP----RLDAV-A 267 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-Hhcc--H-------------HHHHHHH-----HHHHHHHHHHHHH-HHhc----cCCHH-H
Confidence 00 0000010000 0000 0 0000000 0000001000000 0011 11233 3
Q ss_pred HHHHHhhchhhhHHHHHHHHhhhhhhHHHH-HHhhhccCC---------------------------------CCCCCCC
Q 008896 372 VKTLVRLVPIPACTIMLNVILTEFLTLSVQ-QAYTMNTHM---------------------------------GHPRGAS 417 (549)
Q Consensus 372 ~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~-q~~~~~~~~---------------------------------~~~~~~~ 417 (549)
+++....++++++.+++|..+.|..+.+.. +...+|..+ ++...++
T Consensus 268 ~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~ 347 (475)
T TIGR00924 268 RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPT 347 (475)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344456788899999999999999886654 334455442 2334567
Q ss_pred chHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHhhccchhHHHHHHHHHHHhH
Q 008896 418 QLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGG 463 (549)
Q Consensus 418 ~l~~i~~G~~~~~~~~~~a----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~~~~ 463 (549)
...|+++|+++.+++++.+ ..++++++++|+++||+++|++.+...
T Consensus 348 ~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~ 427 (475)
T TIGR00924 348 TPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQA 427 (475)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7888999998877766442 677788899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhccc
Q 008896 464 LGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 526 (549)
Q Consensus 464 ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~ 526 (549)
+|+.+++.+.+...... + ...+|..+++++++..+++++..++.+
T Consensus 428 ~g~~l~~~~~~~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 428 MGSLLGGYLATFGAVPQ--------G----------VTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHHHhccc--------c----------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887654321 1 255777777777777777777666554
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=272.65 Aligned_cols=294 Identities=25% Similarity=0.435 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008896 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 83 ~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~ 162 (549)
++||++.+.+..|+++.+|++.+.+..+...|....++.|++||+++|+++||++++.++.+++.+|.+++++++..+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999988875331111
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 008896 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 242 (549)
.+ ......++++.+.++|.|+++++..++++|++++++ .+.|.++|+++|++.|+|+
T Consensus 81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGS 137 (654)
T TIGR00926 81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGS 137 (654)
T ss_pred cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHH
Confidence 11 234557788999999999999999999999998643 2348999999999999999
Q ss_pred HHHHHHHHHHhhcc-------chHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcc
Q 008896 243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE 315 (549)
Q Consensus 243 ~i~p~i~~~l~~~~-------gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~ 315 (549)
.+++++.+++.+.. ||.++|.++++++++++++++..++.+++.++.++++.+..++++.+.|++....++.
T Consensus 138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~- 216 (654)
T TIGR00926 138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH- 216 (654)
T ss_pred HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-
Confidence 99999999998543 6999999999999999999999999888888888989999999888887643211110
Q ss_pred cccccccCCCcccccCCcccccCCccchhhHhhhhhccccCCCCCCcccCchhHHHHHHHHhhchhhhHHHHHHHHhhhh
Q 008896 316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF 395 (549)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~~~~~~~~~~~~~~~~~~ 395 (549)
.+.+|+|.++... .+++++++|++++++++++..+++|..+.|.
T Consensus 217 -----------------------~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~ 260 (654)
T TIGR00926 217 -----------------------WPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ 260 (654)
T ss_pred -----------------------cchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0124556554331 2357889999999999999999999999999
Q ss_pred hhHHHHHHhhhccCC----------------------------------CCCCCCCchHHHHHHHHHHHHHHHHH
Q 008896 396 LTLSVQQAYTMNTHM----------------------------------GHPRGASQLQRVGIGLAVSILSVIWA 436 (549)
Q Consensus 396 ~t~~~~q~~~~~~~~----------------------------------~~~~~~~~l~~i~~G~~~~~~~~~~a 436 (549)
.+.+..|+..|+.++ +++..++.++|+++|+++++++++++
T Consensus 261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va 335 (654)
T TIGR00926 261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVA 335 (654)
T ss_pred hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999888753 33345788999999999999999886
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=264.40 Aligned_cols=399 Identities=15% Similarity=0.197 Sum_probs=276.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
.++++.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+....+..++++|+++||++|||+++.++.+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 35667889999999999999999999999999999999999999888888877788888999999995599999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
++.++.++++++. .+...+++++++.|+|.|...++..++++|++|+++.+
T Consensus 97 ~~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~-- 147 (500)
T PRK09584 97 VLAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR-- 147 (500)
T ss_pred HHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh--
Confidence 9999988877641 13455678889999999999999999999999876522
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccccc--CCCCChhhH------H
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTR------V 296 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~------~ 296 (549)
|..+++++|++.++|+.+||.+++++.++.|||+.|++.++..+++++.+++.++.+++. ++++++... .
T Consensus 148 --~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (500)
T PRK09584 148 --LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTI 225 (500)
T ss_pred --hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHH
Confidence 567889999999999999999999999999999999998877666666555544433322 222222211 1
Q ss_pred HHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchhhHhhhhhccccCCCCCCcccCchhHHHHHHHH
Q 008896 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV 376 (549)
Q Consensus 297 ~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~ 376 (549)
..+......... +.+++ + .. +............... .+.+..++ +++++.+
T Consensus 226 ~~~~~~~~~~~~----------~~~~~--~--------~~-~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~ 276 (500)
T PRK09584 226 VGVVALIAIATW----------LLHNQ--E--------IA-RMALGVVALGIVVIFG-------KEAFAMKG-AARRKMI 276 (500)
T ss_pred HHHHHHHHHHHH----------HHhcc--h--------HH-HHHHHHHHHHHHHHHH-------HHHhhcCH-HHHHHHH
Confidence 111111111000 00000 0 00 0000000000000000 00011122 3455666
Q ss_pred hhchhhhHHHHHHHHhhhhhhHHHHHHhh-hccCC------------------------------CCCCCCCchHHHHHH
Q 008896 377 RLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM------------------------------GHPRGASQLQRVGIG 425 (549)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~t~~~~q~~~-~~~~~------------------------------~~~~~~~~l~~i~~G 425 (549)
..+++++..++||..+.|.++.+..|+.. +|+++ +.+++.+..+++.+|
T Consensus 277 ~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G 356 (500)
T PRK09584 277 VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIG 356 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHH
Confidence 67778889999999999999998877643 33322 334456678899999
Q ss_pred HHHHHHHHHHH----------------------------------HHHHHHHhhccchhHHHHHHHHHHHhHHHHHHHHH
Q 008896 426 LAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 471 (549)
Q Consensus 426 ~~~~~~~~~~a----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~ 471 (549)
+++.+++++.. ..++++++.+|+++||+++|++++...+|+.++..
T Consensus 357 ~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~ 436 (500)
T PRK09584 357 MVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY 436 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887662 46677889999999999999999999999999888
Q ss_pred HHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 008896 472 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 531 (549)
Q Consensus 472 l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~ 531 (549)
+.+.+.. . ....+.. ...+.+..+|..+++++++..++++...++.++..+.
T Consensus 437 ~~~~~~~-~---~~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~ 488 (500)
T PRK09584 437 VANLMAV-P---DNVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQD 488 (500)
T ss_pred HHHHhcc-c---cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8765421 0 0000000 0112367788888888877777777777777665443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-28 Score=257.40 Aligned_cols=394 Identities=14% Similarity=0.175 Sum_probs=274.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
++++.++.++..++.+++++|++...++.|+++.+|++..+++.+.+.+....+++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+++.... .+...++++..+.++|.|...++..++++|++|+++++
T Consensus 86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~--- 135 (493)
T PRK15462 86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR--- 135 (493)
T ss_pred HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence 999887665421 11233455666677888888899999999999987432
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccC-CCCChhhH--HHH----
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPLTR--VAQ---- 298 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~--~~~---- 298 (549)
|.++++++|...|+|+.++|.+++++.+..||+++|+++++.++++++.++..++.+.+.. ...+|..+ ...
T Consensus 136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 214 (493)
T PRK15462 136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWG 214 (493)
T ss_pred -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHH
Confidence 8999999999999999999999999999999999999988877777777766655543321 11112111 000
Q ss_pred -HHHH-----HHHhhccccCCcccccccccCCCcccccCCcccccCCccchh-hHhh---hhhccccCCCCCCcccCchh
Q 008896 299 -VLVA-----AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DKAA---LELKEDVINPSPWKLCTVTQ 368 (549)
Q Consensus 299 -v~~~-----a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~a~---~~~~~~~~~~~~~~~~~~~~ 368 (549)
+... ...... .++ .....+ -... ...-- +......+
T Consensus 215 ~~~~~~~~~~~~~~~~-----------~~~----------------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 260 (493)
T PRK15462 215 WLLVLLVATPALITVL-----------FWK----------------EWSVYALIVATIIGLGVLA-------KIYRKAEN 260 (493)
T ss_pred HHHHHHHHHHHHHHHH-----------HHH----------------HHHHHHHHHHHHHHHHHHH-------HHHHhcCC
Confidence 0000 000000 000 000000 0000 00000 00000112
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHH-hhhccCC---------------------------------CCCC
Q 008896 369 VEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQA-YTMNTHM---------------------------------GHPR 414 (549)
Q Consensus 369 ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~-~~~~~~~---------------------------------~~~~ 414 (549)
.+|+|++...+++++..++||..+.|.++.+...+ .++|+++ ++++
T Consensus 261 ~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~ 340 (493)
T PRK15462 261 QKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNR 340 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 36788999999999999999999999998777655 3567654 3455
Q ss_pred CCCchHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHhhccchhHHHHHHHHHH
Q 008896 415 GASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAAL 460 (549)
Q Consensus 415 ~~~~l~~i~~G~~~~~~~~~~a----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~ 460 (549)
.++...|+++|++++++++++. ..++++.+.+|++.+|+.||+++.
T Consensus 341 ~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l 420 (493)
T PRK15462 341 TVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYML 420 (493)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence 7889999999999999887654 566777899999999999999988
Q ss_pred Hh-HHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHH--HHHHHhhhhccccccc
Q 008896 461 AG-GLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN--FCAFLYSAYRYKYRSE 530 (549)
Q Consensus 461 ~~-~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~--~~~~~~~~~~~~~~~~ 530 (549)
.. .+|+.++..+.+.....+. ..+.. . +-+..++..+|..++.+.++. ++.+.+..+..|.|.+
T Consensus 421 ~~~~~~~~~~g~~~~~~~~~~~--~~~~~---~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
T PRK15462 421 LSGAIANYLAGVIADQTSQASF--DASGA---I-NYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNR 487 (493)
T ss_pred HHHHHHHHHHHHHHHHhccccC--Ccccc---c-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 54 7999988888776632111 00000 0 000123566777777666555 3444444444454443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-23 Score=228.33 Aligned_cols=176 Identities=14% Similarity=0.054 Sum_probs=141.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+|..+..+.+..++..+.. .+...+.+++..++|++..+.+++.+.+.++.+++.+++|+++||+ |||+++++++++.
T Consensus 165 ~~~l~~i~~l~~~~~g~d~-~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~ 242 (742)
T TIGR01299 165 QWALFFVLGLALMADGVEV-FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 3444444444444444433 2345566788889999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.++++++ .+.+.++++|++.|+|.|+..++...+++|.+|++.
T Consensus 243 ~i~~ll~afa----------------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------ 288 (742)
T TIGR01299 243 GFFAFFSSFV----------------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------ 288 (742)
T ss_pred HHHHHHHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 9888887765 467889999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc-------------cchHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~-------------~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|+..++++.....+|.++++.++.++... .+||+.|++.++..++.+++.++
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887666543 36899888877765555544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=213.14 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=135.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~ 140 (549)
.+++.+..+.+..+...+....+... .+.+..+ .+.+..+.+++.+.+.++..++.++.|+++||+ |||+++.
T Consensus 13 ~~~~~~~~~~~~~~~~g~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~ 90 (502)
T TIGR00887 13 QHFRAIVIAGVGFFTDSYDLFCISLV-TKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYG 90 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHH
Confidence 34445555566666666655433333 3334432 234556678899999999999999999999997 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC
Q 008896 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 141 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
++.+++.++.++++++.. ..+ ..+...++++|++.|++.|+..+..+.+++|.+|++.
T Consensus 91 ~~~~~~~v~~~~~~~~~~---~~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~ 148 (502)
T TIGR00887 91 MELIIMIIATVASGLSPG---SSP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW 148 (502)
T ss_pred HHHHHHHHHHHHHHHccC---ccc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh
Confidence 999999998887776411 000 0236789999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------ccchHHHHHHHHHHHHHHHHH
Q 008896 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-----------------------~~gw~~~f~i~~~~~~i~~~~ 275 (549)
|+++.++++....+|..+++.++.++.. ..+||+.|.+.++..++..++
T Consensus 149 ------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 149 ------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765532 237999998776655544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-20 Score=197.01 Aligned_cols=177 Identities=13% Similarity=0.120 Sum_probs=148.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
++|...+.+.+..++.....+.. ..+.+.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVP-VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHH-HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 35655666666666544444432 3334677889999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+.++.+.+.++ .+.+.++++|++.|++.+...+...+++.|++|+++
T Consensus 84 ~~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~----- 130 (390)
T PRK03545 84 FIASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK----- 130 (390)
T ss_pred HHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh-----
Confidence 99998888776 568889999999999999888999999999999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++.++++..+.++|..++|.+++.+.+..|||+.|++.++..++..++.+.
T Consensus 131 -r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 131 -KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred -hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999899999999887766555444333
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=210.50 Aligned_cols=186 Identities=16% Similarity=0.155 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--------HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--------~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~ 139 (549)
.+.++...+..+...+....+.. ..+.+++.+ +.+..+.+++.+.+.++..++.+++|+++||+ |||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~ 88 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISG-TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehH-hHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence 34445555555555444432333 334455555 88889999999999999999999999999997 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
+++.+++.++.++++++........ .++......++++|++.|++.|+..+...++++|++|++
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 152 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIG----------------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH 152 (479)
T ss_pred HHHHHHHHHHHHHHHhhcccccccc----------------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence 9999999888877765311000000 001134567889999999999999999999999999998
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHHHHHHHHH
Q 008896 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
+ |++.++++..+..+|..+++.++..+. +..|||+.|++.++..++..+..+
T Consensus 153 ~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 153 I------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY 212 (479)
T ss_pred h------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH
Confidence 8 999999999999999999987766553 356899999987766665544433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=197.45 Aligned_cols=177 Identities=17% Similarity=0.169 Sum_probs=151.5
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 008896 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (549)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~ 143 (549)
.+++|.......+..+++.+..+..... .+.+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 87 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVA-APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSV 87 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHH
Confidence 3467777778888888888888665554 4566788999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh
Q 008896 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
++..++.+++.++ .+...+++.|++.|++.+...+...++++|.+|+++
T Consensus 88 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--- 136 (406)
T PRK11551 88 ALFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL--- 136 (406)
T ss_pred HHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH---
Confidence 8888887776664 467788999999999999999999999999999888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
|++++++++.+..+|..+++.+++.+.+..+|++.|++.+++.++..++.
T Consensus 137 ---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK11551 137 ---RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL 186 (406)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888999999988776555444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=200.46 Aligned_cols=169 Identities=11% Similarity=0.033 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+..+..++..++..+..+.+...++ .+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMP-EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHH
Confidence 3444455555555555555555554 44567999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.++++++ .+.+.+++.|++.|++.|...+....++.|++|+++ |+
T Consensus 101 ~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg 146 (434)
T PRK11663 101 INILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RG 146 (434)
T ss_pred HHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HH
Confidence 88887765 467788889999999999888999999999999888 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (549)
+.+++++.+.++|..++|.+++++.+..|||+.|++.++..++..
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~ 191 (434)
T PRK11663 147 GWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG 191 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988776554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-20 Score=187.87 Aligned_cols=183 Identities=13% Similarity=0.147 Sum_probs=165.9
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
..+..|..++.+.+..|+...+-+.... +.+-+.+++|.+..++++.++.|..+..++.++...++||+ .||++++..
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~ 84 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGL 84 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHH
Confidence 3445577888888888888888775554 56778899999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
+.+++++.++++++ +|+..++++|++.|+..|.+.+...+..+++.|+++
T Consensus 85 l~lFi~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~-- 134 (394)
T COG2814 85 LALFIVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK-- 134 (394)
T ss_pred HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc--
Confidence 99999999999998 689999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
|++++++...+..+...+|..++.++.+.+|||+.|++.+...++.++..+...|
T Consensus 135 ----~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 ----RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ----hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999988887777777666555
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-20 Score=192.45 Aligned_cols=177 Identities=10% Similarity=-0.047 Sum_probs=149.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
.++.+..+.+..++..++.......++.|+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~ 91 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC 91 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence 345677788888888888877778888899999999999999999999999999999999999997 9999999999988
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+.+.++...... + ..+...+++.|++.|++.+...+....++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~~~~-~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------ 145 (399)
T PRK05122 92 ALSGLLYLLAGLLAAW-P-------------------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------ 145 (399)
T ss_pred HHHHHHHHHhhhhhcc-c-------------------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------
Confidence 8877666554221000 0 0246678999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (549)
|++.++++..+..+|..++|.+++++.+..||++.+++..+..+
T Consensus 146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 146 TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877655443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-20 Score=190.95 Aligned_cols=155 Identities=13% Similarity=0.094 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
...+..+.+.+++|++..+.+++.+.+.+++.++.++.|+++||+ |||+++..+......+.+.....
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~----------- 76 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP----------- 76 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh-----------
Confidence 345556777889999999999999999999999999999999997 99998766555444443211111
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
.+...++++|++.|+|.+. ..+.....+|.+|+++ |++++++.+.+..+|..+++.
T Consensus 77 -----------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~ 132 (368)
T TIGR00903 77 -----------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALA 132 (368)
T ss_pred -----------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999986 4555566699999887 999999999999999999999
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+++++.+..|||+.|++.++..++..+++++
T Consensus 133 ~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 133 AGLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877665555544444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=191.25 Aligned_cols=172 Identities=13% Similarity=0.033 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.+.+..++..++.....+.++.|+.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA 94 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence 455566666777777766677788899999999999999999999999999999999999997 9999999998877776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.+....+.. ...+...++++|++.|++.+...+...+++.|.+|+++ |++
T Consensus 95 ~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 148 (392)
T PRK12382 95 GLAYLLAAILPVS--------------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK 148 (392)
T ss_pred HHHHHhhhccccc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence 5544332111100 00467888999999999999888888899999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~ 268 (549)
+++++..+.++|..++|.+++++.+..||++.+.+..+.
T Consensus 149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 999999999999999999999999889999877655443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-20 Score=193.09 Aligned_cols=178 Identities=15% Similarity=0.077 Sum_probs=152.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
.+|+..+.+++..++..+....+.. +.+++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence 4577777777777777777755544 45689999999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+.++.++++++ .+...++++|++.|++.++..+....+++|.+|+++
T Consensus 83 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~----- 129 (412)
T TIGR02332 83 WGIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF----- 129 (412)
T ss_pred HHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH-----
Confidence 99999888876 467889999999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~------~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|++.+++++.+..+|..+++.+++++.+ ..|||+.|++.++..++..++.++.
T Consensus 130 -rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 130 -RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998864 3699999998777665554444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=191.45 Aligned_cols=173 Identities=19% Similarity=0.154 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
.++...++..++.......++.+ .++++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~ 98 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIG 98 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHH
Confidence 34444556666654444444444 567788999999999999999999999999999997 9999999988877777666
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
+.+.... .. .+.+.+++.+++.|++.+...++..+.+.|.+|+++ |+++.+
T Consensus 99 ~~~~~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 149 (417)
T PRK10489 99 LALNAFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGA 149 (417)
T ss_pred HHHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHH
Confidence 5432110 00 356778889999999988888888999999999887 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
+.+...++|..+||.+++++.+..||+|.|++.++..++..++.
T Consensus 150 ~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 150 ITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988899999988776655554443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=189.85 Aligned_cols=150 Identities=12% Similarity=0.120 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 008896 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (549)
Q Consensus 86 ~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~ 165 (549)
+.+.. +.+.+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++..++.++.++++++
T Consensus 26 ~~~~~-~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a--------- 94 (393)
T PRK09705 26 TSVGP-LLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY--------- 94 (393)
T ss_pred hccch-hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC---------
Confidence 34444 45667889999999999999999999999999999999997 99999999999999999999886
Q ss_pred CCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 008896 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (549)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~ 245 (549)
++...++++|++.|+|.+...+.....+.|.+| ++ |+++++++..+.++|..++
T Consensus 95 -------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g 148 (393)
T PRK09705 95 -------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG 148 (393)
T ss_pred -------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999987 66 8999999999999999999
Q ss_pred HHHHHHHhhcc-chHHHHHHHHHHHHHH
Q 008896 246 FTLVVYIQMEH-GWGSAFGALAIAMGIS 272 (549)
Q Consensus 246 p~i~~~l~~~~-gw~~~f~i~~~~~~i~ 272 (549)
+.+++++.++. +||+.+.+.++..++.
T Consensus 149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 149 AAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999988775 8999876655443333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=190.15 Aligned_cols=169 Identities=15% Similarity=0.203 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+.++...++..++.+.+.+.++.|+++++|++..+.+++.+.+.+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5667888889999989999999999999999999999999999999999999999999997 999999999999999888
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
++... .+.+.+++++++.|++.+...+...+++.|.+|+++ |++++
T Consensus 92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~ 137 (400)
T PRK11646 92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF 137 (400)
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 87764 467778899999999999888999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
++.+...++|..+||.+++++. ..||++.|++.++..++..++.
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~ 181 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFN 181 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 6799999998776655554443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=186.91 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=137.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~------------- 79 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA------------- 79 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence 4455678899999999999999999999999999999999997 99999999999999888888775
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.+.+.++++|++.|++.+...+....+++|.+|+++ |++.++++....++|..++|.++
T Consensus 80 ---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~ 138 (399)
T TIGR00893 80 ---------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLV 138 (399)
T ss_pred ---------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHH
Confidence 467889999999999999999999999999999888 99999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+++.+..+|++.|++.++..++..++.++
T Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 139 GWILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999877766655554443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=197.28 Aligned_cols=345 Identities=15% Similarity=0.075 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhH
Q 008896 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (549)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (549)
+.++++|.+|.++|.+++|+++|++ |||..++++.++.+++.+++.++... ...
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~ 116 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF 116 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence 4578889999999999999999997 99999999999998888887776331 467
Q ss_pred HHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHh-hccchHHHHHHH
Q 008896 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-VYIQ-MEHGWGSAFGAL 265 (549)
Q Consensus 188 ~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~-~~l~-~~~gw~~~f~i~ 265 (549)
.+++++|++.|+..|......+.++.|..|.+- ||..-.+..++..+|-.++..++ ..+. ....|++.+.+.
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 889999999999999999999999999999999 99999999999999999996655 3443 445699998888
Q ss_pred HHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcccccccc-cCCCcccccCCcccccCCccchh
Q 008896 266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE-VPGKHSAIKGSGKIAHTDDFRCL 344 (549)
Q Consensus 266 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l 344 (549)
.+...+.+++..+ +||||+| |+. +++.++|++..++.+..++..-.
T Consensus 191 ~i~~~~~l~~l~~--------------------------------~PESPk~-Ll~~k~~~~~A~~sl~~y~G~~~~~~~ 237 (485)
T KOG0569|consen 191 LIPALLQLALLPF--------------------------------LPESPKY-LLIKKGDEEEARKALKFYRGKEDVEAE 237 (485)
T ss_pred HHHHHHHHHHHhc--------------------------------CCCCcch-HHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence 8877777666554 6999999 887 67778888887776655432221
Q ss_pred hHh--hhhhcccc---CCCCCCcccCchhHHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhhhccC--------C-
Q 008896 345 DKA--ALELKEDV---INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH--------M- 410 (549)
Q Consensus 345 ~~a--~~~~~~~~---~~~~~~~~~~~~~ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~~~~~--------~- 410 (549)
+++ .+...++. .+...|.++.... .++.....+.+.+++++-.......+++......++... .
T Consensus 238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~~--lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g 315 (485)
T KOG0569|consen 238 IEEMLREIEEEELEKKKQISLRQLLKNPT--LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIG 315 (485)
T ss_pred HHHHHHHHHHhccccccCCcHHHHhcCcc--hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111 11111111 1111111111111 111222222233333322222111222221111111110 0
Q ss_pred ---------------CCCCCCCchHHHHHHHHHHHHHHHHH--------------------------------HHHHHHH
Q 008896 411 ---------------GHPRGASQLQRVGIGLAVSILSVIWA--------------------------------GLLEFLY 443 (549)
Q Consensus 411 ---------------~~~~~~~~l~~i~~G~~~~~~~~~~a--------------------------------~~~~~~~ 443 (549)
+.+|++-.+.- ..++.+..+.+... -.+-+..
T Consensus 316 ~v~~~~t~~~~~lid~~gRRpLll~~-~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~a 394 (485)
T KOG0569|consen 316 IVNLLSTLVSPFLIDRLGRRPLLLIS-LSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGA 394 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHH
Confidence 34433322111 11111111111000 2233446
Q ss_pred hhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 008896 444 EEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 523 (549)
Q Consensus 444 ~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~ 523 (549)
|++|.+.|+.++++..+.+++.+++.....+.+.+..| .++|.++++.+++..+..+...+
T Consensus 395 ELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------------------~~~filF~i~~~~~~i~~~~~lP 455 (485)
T KOG0569|consen 395 ELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------------------PYVFILFVIPLAIFLIYLYRYLP 455 (485)
T ss_pred HhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------chhhHHHHHHHHHHHHHHHHhCc
Confidence 89999999999999999999999999999999988776 37888899999999999999999
Q ss_pred ccccccccCCCCchhh
Q 008896 524 RYKYRSEQKHGNDYEV 539 (549)
Q Consensus 524 ~~~~~~~~~~~~~~~~ 539 (549)
++|+|+..|+.++.++
T Consensus 456 ETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 456 ETKGRTPYEIIEELEK 471 (485)
T ss_pred ccCCCCHHHHHHHHHh
Confidence 9999987665554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-19 Score=187.25 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=151.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
.+|..+.+.+..++...+.+.+.++++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence 445677888889999999988899999999999999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++.++ .+.+.+++++.+.+.+.+...++..+..+|.+|+++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (395)
T PRK10054 84 ASGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------ 129 (395)
T ss_pred HHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------
Confidence 8888777665 456667777888888777778888999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
|++.+++.+...++|..++|.+++++.+ .||++.|++.++..++.+++..
T Consensus 130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 130 KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 7899999988777666554433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-19 Score=191.56 Aligned_cols=180 Identities=14% Similarity=0.063 Sum_probs=153.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+|..+..+.+..++..+....+... .+.+.+++|.+..+.+++.+.|.++...+.+++|+++||+ |||+++.++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a-~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA-APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 5667778888888888888666555 4556789999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccC-CCCChhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF-DERSKDYKT 225 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~-~~~~~~~~~ 225 (549)
.++.++++++ .+.+.++++|+++|+|.++..+.....+.+.+ |+++
T Consensus 82 ~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~----- 128 (495)
T PRK14995 82 GLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ----- 128 (495)
T ss_pred HHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-----
Confidence 9999998876 57888999999999999998888888887777 4555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
|+++++++.....+|..+||.+++++.++.||||.|++.....++.+++.+...++
T Consensus 129 -r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 129 -RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998776655555544444443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-19 Score=185.70 Aligned_cols=173 Identities=13% Similarity=0.083 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
....+.+.+++..++...+.+.++ .+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++..+..++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~ 91 (406)
T PRK15402 14 FPLCLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILT 91 (406)
T ss_pred HHHHHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHH
Confidence 333334444444444444444444 45688999999999999999999999999999999997 9999999999888888
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++..+ .+.+.+++.|++.|++.+...+...+.+.|.+|+++ |.+
T Consensus 92 ~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~ 137 (406)
T PRK15402 92 CLAILLA----------------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIK 137 (406)
T ss_pred HHHHHHH----------------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHH
Confidence 8877665 456778899999999999888888999999999887 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.+++......+|..++|.+++++.+..+|++.|++.++..++..+..+.
T Consensus 138 ~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 138 ITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999999899999998877776665554433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-18 Score=188.35 Aligned_cols=178 Identities=12% Similarity=0.037 Sum_probs=152.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
.+.++.+.+..++..+..+.+...++.|. +++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 34677788888888888887777776665 57999999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++.++ .+...++++|++.|++.++..+.....+.|.+|+++ |
T Consensus 87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~ 132 (471)
T PRK10504 87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y 132 (471)
T ss_pred HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence 888776654 456778899999999999999999999999999877 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
++.++++....++|..++|.+++++.+..|||+.|++......+..++.....+
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999877665555554444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=192.10 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=145.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
.+|+......+..+...+..+.. .++.+++.+++|.++.+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence 44556666666677766766544 4556778899999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+++.++ .+...++++|++.|++.+...+....++.|.+|+++
T Consensus 93 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~----- 139 (426)
T PRK12307 93 YSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL----- 139 (426)
T ss_pred HHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH-----
Confidence 99998887776 567889999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~ 268 (549)
|+++.+++..+..+|..+++.+.+++.+..|||+.|++..+.
T Consensus 140 -r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 140 -KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred -hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 999999999999999999999999998889999999875443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-18 Score=188.94 Aligned_cols=175 Identities=18% Similarity=0.133 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-HHH-----HHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSN-----AVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~-a~~-----~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i 141 (549)
++..+...+..+++.+.+. +.....+++.++++.+..+ ..+ +.++..++..++.++.|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 4556666778888888775 4556677888888643321 111 24666788899999999999997 99999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCCh
Q 008896 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (549)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (549)
+++++.++.++++++.+...+.. .....++++|+++|+|.|+..+...++++|.+|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g~--------------------~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIGI--------------------WAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHHH--------------------HHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence 99999999999988622100000 011247899999999999999999999999999998
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHH
Q 008896 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (549)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~~~~ 270 (549)
|+...++...+..+|..+++.+...+. ..+|||+.|++.++..+
T Consensus 152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 999999988888888888876655443 25799999998665433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-19 Score=185.91 Aligned_cols=174 Identities=13% Similarity=0.212 Sum_probs=151.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
.++.+|+......+..+...+..+.+.. ..+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVAL-VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 4567788888888888888888865544 45677889999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
.++..++.+++.++ .+...++++|++.|++.++..+...+++.|.+|+++
T Consensus 84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 133 (405)
T TIGR00891 84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL-- 133 (405)
T ss_pred HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence 99888888877765 467788999999999999999999999999999988
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHH
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGIS 272 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g--w~~~f~i~~~~~~i~ 272 (549)
|++.+++++.+..+|..+++.+++.+.+..+ ||+.|++.++..++.
T Consensus 134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887766 999998765544443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-18 Score=182.37 Aligned_cols=172 Identities=12% Similarity=-0.010 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-----HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~-----a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
....+++..++..++++.....++.|+ +++|.+..+ .+++.+++.++..++.++.|+++||+ |||+++.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 92 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYV-EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH-HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence 455556677777888777777777777 468888654 37788889999999999999999997 99999999998
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++... .+.+.+++.|++.|++.+ ..+....++.|.+|+++
T Consensus 93 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---- 139 (408)
T PRK09874 93 GMGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK---- 139 (408)
T ss_pred HHHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh----
Confidence 888887776654 467788899999999755 45777788899999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++..++++.+..+|..++|.+++++.+..+|++.|++.++..++..++.+.
T Consensus 140 --~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (408)
T PRK09874 140 --SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF 191 (408)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999899999999887766655554443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=193.98 Aligned_cols=155 Identities=18% Similarity=0.279 Sum_probs=129.3
Q ss_pred HHHHHHHhcCCC--------hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 008896 92 MVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (549)
Q Consensus 92 l~~yl~~~l~~s--------~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~ 163 (549)
..+.+..+++.+ ..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.++.+++.+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~----- 123 (481)
T TIGR00879 50 ALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF----- 123 (481)
T ss_pred hhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 344555566666 88999999999999999999999999997 9999999999999998888765421
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 008896 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (549)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 243 (549)
..+.+.++++|++.|+|.+...+...++++|.+|+++ |++.+++++.+.++|..
T Consensus 124 --------------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~ 177 (481)
T TIGR00879 124 --------------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGIL 177 (481)
T ss_pred --------------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHH
Confidence 0345678999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHH---HHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 244 VAFTLV---VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 244 i~p~i~---~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+++.++ ..+.+..|||+.|++.++..++.++..++
T Consensus 178 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 178 VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 999998 66667789999999866655544444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=192.95 Aligned_cols=158 Identities=15% Similarity=0.065 Sum_probs=130.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 008896 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (549)
.+.+.+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.++++.....
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~----------- 117 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS----------- 117 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 345677889999999999999999999999999999999997 99999999988887777666543110
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008896 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~ 250 (549)
...+...+++.|++.|++.+...+....+++|++|+++ |+++++++..+.++|+.+++.+..
T Consensus 118 ------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 118 ------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred ------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHH
Confidence 00468889999999999999999999999999999999 999999999999999999999988
Q ss_pred HHhhcc---chHHHHHHHHHHHHHHHHHHHh
Q 008896 251 YIQMEH---GWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 251 ~l~~~~---gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++.... +|+..|.+.++..++..++.++
T Consensus 180 ~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 180 WGANYFFDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred HHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 776643 5888888766655544443333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-18 Score=183.32 Aligned_cols=179 Identities=16% Similarity=0.146 Sum_probs=132.3
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHH-----HHHHHHHHHHHhHHHHHhhhccchH
Q 008896 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRY 136 (549)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--~~s~~~a~~~~-----~~~~~~~~~~~l~~G~lsD~~~GR~ 136 (549)
...+|+..+..++..+++.+....+....+.++.+++ +.++.+ +++. .+..++..++.++.|+++||+ |||
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr 94 (438)
T PRK09952 17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRK 94 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccH
Confidence 3445666777777888888877655444555666665 666653 3332 223345667888899999997 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccC
Q 008896 137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (549)
Q Consensus 137 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (549)
+++.++.+++.++.++++++....... -.....++++|+++|++.|+..+....++.|.+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 154 (438)
T PRK09952 95 RMLMLTVWMMGIATALIGLLPSFSTIG--------------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA 154 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHH--------------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence 999999999999999888762210000 011235888999999999999999999999999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHH
Q 008896 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (549)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~~~~ 270 (549)
|+++ |+...+....+..+|..++..+..++. ..+|||+.|++.++..+
T Consensus 155 p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 155 PKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred CCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 9988 999999888888899888887776654 25799999988766543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-19 Score=189.91 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=125.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccc
Q 008896 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (549)
Q Consensus 93 ~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 172 (549)
.+.+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.++++++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~---------------- 104 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS---------------- 104 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh----------------
Confidence 4566789999999999999999998899999999999997 99999999998888888887665
Q ss_pred ccccCCCCCcchhhHHHHHH-HHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008896 173 SQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (549)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~ 251 (549)
.+.+.+++ .|++.|++.+...+...+++.|.++ ++ |+++.++.+.+..+|..++|.++++
T Consensus 105 ------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~ 165 (455)
T TIGR00892 105 ------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQY 165 (455)
T ss_pred ------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34555544 4688899988766666778888885 56 9999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 252 IQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 252 l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
+.+..|||++|++.++..++..+..++.
T Consensus 166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 166 LFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887766555444443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-18 Score=177.95 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=149.1
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
.++..|+....+....++.....|.....++. +.+++|+++.+.++..+.+.++..++.++.|+++||+ |||+++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~ 91 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF 91 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence 34456776666666666666666555555544 5678999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
.+++.++.+++.++ .+.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-- 141 (394)
T PRK10213 92 AVLLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT-- 141 (394)
T ss_pred HHHHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH--
Confidence 99999988887765 468889999999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (549)
|+++++++..+.++|..++|.+++++.+..|||+.|++.++..++..
T Consensus 142 ----~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 142 ----VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998766554443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-21 Score=199.56 Aligned_cols=268 Identities=34% Similarity=0.512 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhccc
Q 008896 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ 215 (549)
Q Consensus 136 ~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~ 215 (549)
+|+++++.+++++|.+++++++..+... ++.+...++++++++++|.|+.+|++.++++||
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~-------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq 61 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLP-------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ 61 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhh-------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 5899999999999999988876543321 224567899999999999999999999999999
Q ss_pred CCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccccc-CCCCChhh
Q 008896 216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT 294 (549)
Q Consensus 216 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~ 294 (549)
+++++ ...|.++|+++|++.|+|+.+++.+.++++++.||.++|+++++.+++++++++..++.+++. ++.++++.
T Consensus 62 ~~~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~ 138 (372)
T PF00854_consen 62 YDEDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT 138 (372)
T ss_dssp SSTTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred hcccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence 99874 234999999999999999999999999999999999999999999999999999999999888 77788877
Q ss_pred H-HHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchhhHhhhhhccccCCCCCCc-ccCchhHHHH
Q 008896 295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEV 372 (549)
Q Consensus 295 ~-~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~ve~~ 372 (549)
+ ...++..+.+++....|....+ +.+.....+ .. .......... +........ ..|. .|+.+++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-----~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~ 207 (372)
T PF00854_consen 139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQYS-ER-----SIFGIIVFIR-AAVIFFPEI---FFWALFCQVQRVEEL 207 (372)
T ss_dssp --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHC-CC-----CCCCCCCHHH-HHHHHCCCH---HHHTTTSSTTTHHHC
T ss_pred hhHHHHHHHHHHHhhcccccchHH-HHHhhhhhh-hh-----hhhhhhhhcc-chhhhhhhh---hhcccCCccceeeee
Confidence 7 5566666667766655433332 221110000 00 0000001111 111111000 0111 1567788999
Q ss_pred HHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhhhccCC----------------------------------CCCCCCCc
Q 008896 373 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM----------------------------------GHPRGASQ 418 (549)
Q Consensus 373 k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~~~~~~----------------------------------~~~~~~~~ 418 (549)
|.+.+.++.+.+.++++..+.+..++...|...+|+.+ +++..++.
T Consensus 208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~ 287 (372)
T PF00854_consen 208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSP 287 (372)
T ss_dssp CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccchh
Confidence 99999999999999999999999998888887775433 55567889
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 008896 419 LQRVGIGLAVSILSVIWA 436 (549)
Q Consensus 419 l~~i~~G~~~~~~~~~~a 436 (549)
..|+++|++++.++++++
T Consensus 288 ~~k~~~G~~~~~~~~~~~ 305 (372)
T PF00854_consen 288 PQKFGIGMVFAILAMFVA 305 (372)
T ss_dssp HHHHHHH-HHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 999999999988888775
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=178.93 Aligned_cols=173 Identities=17% Similarity=0.080 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 008896 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~ 153 (549)
++...++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 456666666766555566666654 6899999999999999999999999999999997 99999999998888887777
Q ss_pred HHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH
Q 008896 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
.+.... + +.+.+.++++|++.|++.+...+...++++|.+|+++ |++.+++
T Consensus 82 ~~~~~~----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (365)
T TIGR00900 82 PFVALL----G-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL 132 (365)
T ss_pred HHHHHc----C-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence 665210 0 0267889999999999999999999999999999887 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
++.+..+|..++|.+++++.+..||++.|++.++..++..++.+
T Consensus 133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887776555544433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-19 Score=190.44 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=128.6
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCC
Q 008896 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (549)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (549)
+++++..+.+.+.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+++.++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6889999999999999999999999999999997 9999999999888888777654311
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-c
Q 008896 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G 257 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~-g 257 (549)
.+...+++.|++.|++.+...+....+++|++|+++ |++++++++.+..+|..++|.+++++.+.. |
T Consensus 129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g 196 (465)
T TIGR00894 129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG 196 (465)
T ss_pred ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 245678899999999999999999999999999988 999999999999999999999999999884 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 008896 258 WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 258 w~~~f~i~~~~~~i~~~~~~~ 278 (549)
||+.|++.++..++..++++.
T Consensus 197 w~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 197 WPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred CCeehhhhhHHHHHHHHHHHH
Confidence 999999887766555544443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-18 Score=181.57 Aligned_cols=177 Identities=16% Similarity=0.202 Sum_probs=131.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHH---HHHHHHHhHHHHHhhhccchHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNFL---GISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~s~~~a~~~~~~~~---~~~~~~~l~~G~lsD~~~GR~~~~~ 140 (549)
++..+....+..+++.+.+.. ...+.+++.++++ .+..+.+.....+. ++..++.+++|+++||+ |||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~ 97 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence 344455555667777777754 5667788888885 45554444344443 44458999999999997 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC
Q 008896 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 141 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
++.+++.++.++++++....... -.....++++|+++|++.|+..+...++++|.+|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 99999999999887752110000 0134568899999999999999999999999999988
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHHH
Q 008896 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI 271 (549)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~~~~i 271 (549)
|+++.++.+.+.+.|..+++.+...+. ..+|||+.|++.++..++
T Consensus 158 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 158 ------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 999999988888888888887665543 257999999887665544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-18 Score=180.84 Aligned_cols=156 Identities=11% Similarity=0.069 Sum_probs=125.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 008896 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (549)
...+|+.++ |++..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.+.+++....
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 445678877 99999999999999999999999999999997 99999999999988888877764110
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 008896 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV 249 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-i~p~i~ 249 (549)
..+...+++.|++.|++.+...+.....+.|++|+++ |++++++++.+.++|+. ++|+++
T Consensus 117 -------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~ 177 (452)
T PRK11273 117 -------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL 177 (452)
T ss_pred -------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 0256678888999999999988888888999999888 99999999999999875 455544
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
..+....|||+.|++.++..++..++.++
T Consensus 178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 178 LGMAWFNDWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 44444459999999877665554444333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=197.59 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=128.9
Q ss_pred HHHHHhcCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 008896 94 TFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 94 ~yl~~~l~~s---~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (549)
+.+.+++|++ ..+.++..+++.++..++.++.|+++||+ |||+++.++.++..++.++.+++
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~-------------- 177 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS-------------- 177 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc--------------
Confidence 4567789998 88999999999999999999999999997 99999999999999888887765
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008896 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~ 250 (549)
.+.+.++++|++.|++.++..+....+++|.+|+++ |+...+++..+..+|..++|.++.
T Consensus 178 --------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 237 (505)
T TIGR00898 178 --------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAY 237 (505)
T ss_pred --------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999988 999999998899999999998877
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 251 YIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 251 ~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.+.+ ||+.|++.++..++..+..++
T Consensus 238 ~~~~---wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 238 FIPD---WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HhhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 6654 999999887766655555433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-18 Score=175.79 Aligned_cols=177 Identities=18% Similarity=0.167 Sum_probs=147.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+++..+.+.+..++..++.....+ ..+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLP-AFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 344455555555555555544444 44567889999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++..+ .+...++++|++.|++.+...+...+++.|.+|+++
T Consensus 81 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 126 (385)
T TIGR00710 81 ALSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------ 126 (385)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence 8888887765 467788999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|++.+++.+....+|..++|.+++++.+..||++.|++.++..++..++.++.
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988777666555544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-17 Score=176.36 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=132.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 008896 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (549)
Q Consensus 94 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (549)
+.+.+++|.+..+.++.++++.++..++.+++|+++||+ |||+++.++..++.++.+++.++
T Consensus 40 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a----------------- 101 (413)
T PRK15403 40 INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT----------------- 101 (413)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-----------------
Confidence 457889999999999999999999999999999999997 99999999999999988888765
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
.+...++++|+++|++.+...+.....+.|.+|+++ |++.++++.....+|..+||.+++++.
T Consensus 102 -----------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~ 164 (413)
T PRK15403 102 -----------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALM 164 (413)
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999988766777788899999888 899999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHh
Q 008896 254 MEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 254 ~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+..|||+.|++.++..++..++.++
T Consensus 165 ~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 165 HFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999887776666554433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-18 Score=178.31 Aligned_cols=153 Identities=14% Similarity=0.052 Sum_probs=132.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
..+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~------------- 88 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA------------- 88 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH-------------
Confidence 4467888899999999999999999999999999999999997 99999999999999999888876
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.+.+.++++|++.|++.+...+.......+.+| ++ |++..+++..+..+|..+++.+.
T Consensus 89 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~ 146 (377)
T TIGR00890 89 ---------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLI 146 (377)
T ss_pred ---------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHH
Confidence 578889999999999999888888888888886 45 89999999999999988877777
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+.+.+..|||+.|++.++..++..+..+.
T Consensus 147 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 147 TSVINLEGVPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 77777889999999887766655544433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-18 Score=183.95 Aligned_cols=168 Identities=14% Similarity=0.212 Sum_probs=146.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+.+|+.+..+.+..++..+..+.+ ..+.+++.+++|++..+.++..+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 456677777777777777777544 4456778889999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.++ .+.+.++++|++.|++.++..+....++.|.+|+++
T Consensus 94 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 141 (496)
T PRK03893 94 LFSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL---- 141 (496)
T ss_pred HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence 999988887765 467889999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~ 268 (549)
|++.+++++.+.++|..++|.+.+++.+..|||+.|++.++.
T Consensus 142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=176.92 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLS---VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~---~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+.++...++...++|.+. ....+++.++.++|.+|.+.+.+.+.+.+.++-.+.|.+|||. +.|+.+.+++++..+
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence 445666677777777653 3466889999999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
..+++.++ .+...+.+..++.|++.|.-.|.....++.+|++++ ||
T Consensus 107 ~nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG 152 (448)
T COG2271 107 VNILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RG 152 (448)
T ss_pred HHHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cC
Confidence 99999887 567888889999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 229 RFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~--~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
+..++++.+-|+|+++.|.+. +++..+.+||.+|++++++.++..++.++.
T Consensus 153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999998876666555543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-19 Score=191.32 Aligned_cols=360 Identities=15% Similarity=0.170 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHHhc-----CCCh--HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 008896 87 GLSVNMVTFMFYVM-----HKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (549)
Q Consensus 87 ~~~~~l~~yl~~~l-----~~s~--~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~ 159 (549)
+..+.+..++.+.. ..+. .+.+++.+.+.++..++.++.|+++|++ |||++++++.+++.+|.++++++
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a--- 139 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA--- 139 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh---
Confidence 45555555555432 1222 2347999999999999999999999987 99999999999999999999987
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHH
Q 008896 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (549)
.+..+++++|++.|+|.|+.....+.+++|..|++. |+...+.+++...
T Consensus 140 -------------------------~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~ 188 (513)
T KOG0254|consen 140 -------------------------PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFIT 188 (513)
T ss_pred -------------------------hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcccc
Q 008896 240 VGAIVAFTLVVYIQME--HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELI 317 (549)
Q Consensus 240 ig~~i~p~i~~~l~~~--~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~ 317 (549)
+|..++.. .++...+ .+||..+++..+..++..+.+++ .||+|+|
T Consensus 189 ~Gi~~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~--------------------------------~pesp~~ 235 (513)
T KOG0254|consen 189 IGILLGYC-INYGTSKVYAGWRIPLGLALIPAVILALGMLF--------------------------------LPESPRW 235 (513)
T ss_pred HHHHHHHH-HhhhhccCCccHHHHHHHHHHHHHHHHHHHHh--------------------------------CCCChHH
Confidence 99998844 4444444 48998888877766665555333 3566666
Q ss_pred cccccCCCcccccCCcccccC--Cc-cchhhHhhhhhcccc---CCCCCCcccCchhHHHHHHHHhhchhhhHHHHHHHH
Q 008896 318 GLYEVPGKHSAIKGSGKIAHT--DD-FRCLDKAALELKEDV---INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVI 391 (549)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~~--~~-~~~l~~a~~~~~~~~---~~~~~~~~~~~~~ve~~k~~~~~~~~~~~~~~~~~~ 391 (549)
+.++++.+++.+...++... .+ ...++........+. ..+..|+.+.. -...|+....+.+..+++.....
T Consensus 236 -L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~ 312 (513)
T KOG0254|consen 236 -LIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGIN 312 (513)
T ss_pred -HHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCc
Confidence 66655555554444433331 11 111111110000000 00111221111 11233333334444444432222
Q ss_pred hhhhhhHHHHHHhhhccC-C----------------------CCCCCCCch---HHHHHHHHHHHHHHHH----------
Q 008896 392 LTEFLTLSVQQAYTMNTH-M----------------------GHPRGASQL---QRVGIGLAVSILSVIW---------- 435 (549)
Q Consensus 392 ~~~~~t~~~~q~~~~~~~-~----------------------~~~~~~~~l---~~i~~G~~~~~~~~~~---------- 435 (549)
....++....+....+.. . |.+|++-.+ ..+.+++++.++....
T Consensus 313 ~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
T KOG0254|consen 313 YVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKG 392 (513)
T ss_pred eEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 111111111222111111 0 222221111 1111222211111100
Q ss_pred -----------------H--H--HHHHHHhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCC
Q 008896 436 -----------------A--G--LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 494 (549)
Q Consensus 436 -----------------a--~--~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~ 494 (549)
. + .+-...|.+|.+.|+.+.++....+++.+++-...........+
T Consensus 393 ~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~------------- 459 (513)
T KOG0254|consen 393 AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG------------- 459 (513)
T ss_pred hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 0 2 22244688999999999999999999999887776666543110
Q ss_pred CcccchhHHHHHHHHHHHHHHH-HHHhhhhccccccccCCCC
Q 008896 495 INTGRFDYLYWLLAVLSVINFC-AFLYSAYRYKYRSEQKHGN 535 (549)
Q Consensus 495 ~n~~~~~~~f~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 535 (549)
....|+++++++.+..+ +++++.+++|+++.+|.++
T Consensus 460 -----~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 460 -----IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred -----ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 12456677777777777 7888999999998876543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-17 Score=174.21 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+.++.+.+..++..+..+...+.+ +.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVL-TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhCh-HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 356667777777777776666654 556789999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.++++++ .+.+.+++.|++.|++.+...+....++.|.+++++ |+
T Consensus 81 ~~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~ 126 (382)
T PRK10091 81 GNAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VT 126 (382)
T ss_pred HHHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hh
Confidence 99888776 568889999999999999988888889999998877 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
+.++++..+..+|..++|.+++++.+..|||+.|++.++..++..+..+
T Consensus 127 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 127 AAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999989999999988776555444333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-19 Score=186.86 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=135.4
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCC
Q 008896 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (549)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (549)
++++++.+-+++.+.+..|+.++.+.+|+++||+ |-|+++.++.++..+++++.++++.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6788999999999999999999999999999997 9999999999999999999998854
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cc
Q 008896 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HG 257 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~-~g 257 (549)
.+...+++.|+++|++.|...|++..+.+.+.|+.| |+++.++.+.+..+|..++-.++|++.+. .|
T Consensus 126 ------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G 193 (466)
T KOG2532|consen 126 ------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG 193 (466)
T ss_pred ------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence 344567999999999999999999999999999999 99999999999999999999999999988 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 008896 258 WGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 258 w~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|++.|++.++..++..+++++.
T Consensus 194 W~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877776666553
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-17 Score=174.18 Aligned_cols=175 Identities=7% Similarity=0.054 Sum_probs=145.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
.+||+..+...+..++.....+.+...+ +.+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~ 80 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVM-GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFA 80 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 4566777777777777766665554444 556789999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.++ .+...++++|++.|++.+...+...+.+.|.+|+++
T Consensus 81 ~~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~---- 128 (394)
T PRK03699 81 LMILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ---- 128 (394)
T ss_pred HHHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch----
Confidence 988888887765 467788999999999999988899999999998877
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHH
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-~~gw~~~f~i~~~~~~i~~~~ 275 (549)
|+..++..+....+|+.++|.+.+++.. ..|||+.|.+.++..++..++
T Consensus 129 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 129 --RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 9999988888888999999999888764 579999998877665544443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-17 Score=172.93 Aligned_cols=176 Identities=13% Similarity=0.055 Sum_probs=142.2
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 008896 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (549)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~ 143 (549)
+-+-||.+....+..++..++.+....++++|+ +++|.+..+.+++.+.+.++..++.++.|+++||+ ||||++.++.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~ 85 (402)
T TIGR00897 8 KIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGL 85 (402)
T ss_pred HcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHH
Confidence 344566777888888888888777777788887 67899999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh
Q 008896 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
++..++.+++.+... .. .+...+++.|++.|+|.+...+...+.+.+.+|+++
T Consensus 86 ~~~~~~~~~~~~~~~-----~~-------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~--- 138 (402)
T TIGR00897 86 LLWCVGHAAFIVFGL-----GH-------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN--- 138 (402)
T ss_pred HHHHHHHHHHHHHhc-----cC-------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH---
Confidence 998888765532111 00 256677888999999988877777888889999888
Q ss_pred hhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 008896 224 KTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~ig~-~i~p~i~~~l~~~~gw~~~f~i~~~~~~i 271 (549)
|++++++++.+.++|. .++|.+++++.+..||+..+|.......+
T Consensus 139 ---~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~ 184 (402)
T TIGR00897 139 ---LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLT 184 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 9999999999999996 58999999998888977666654443333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=170.61 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
.+.+..++..++.+......+.|. +++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 455666777777776666666665 56899999999999999999999999999999997 9999999999999999888
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
+.+. .+...++++|++.|++.+...+...++..|.+|+++ |++.++
T Consensus 81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 126 (352)
T cd06174 81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG 126 (352)
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence 8765 467789999999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+.+....+|..++|.+++.+.+..+|++.|++.++..++..++..+
T Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888776666555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=171.77 Aligned_cols=169 Identities=11% Similarity=0.041 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH-HHHHHHHHHHHH
Q 008896 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGI 153 (549)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i-~~~l~~~g~~~~ 153 (549)
.+..++..++.....+.++.|+.+++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.+++ +..+..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3456777778877888899999999999999999999999999999999999999997 98887655 455555565665
Q ss_pred HHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH--H
Q 008896 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF--F 231 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~--~ 231 (549)
+.+ .+.+.+++.|++.|.+.+...|...++..|..+++. |... .
T Consensus 82 ~~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~ 127 (375)
T TIGR00899 82 AWN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFS 127 (375)
T ss_pred Hhc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHH
Confidence 554 456677788888888877778888888888877655 5543 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++.....++|..++|.+++++.+..|||+.|++.++..++..++.++
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 67777889999999999999999899999999887766655554444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-17 Score=173.48 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+.++.+++..++..++...+.+.++.|+. ++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 46788888888888888777777777765 7899999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+.+.++ .+.+.++++|++.|++.+...+...+.+.|..++++ |+
T Consensus 84 ~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~ 129 (381)
T PRK03633 84 GCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RG 129 (381)
T ss_pred HHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HH
Confidence 88887765 467888999999999999988888888888888777 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
+.++++..+.++|..+||.+++++.+..
T Consensus 130 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 130 RLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999987654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=180.89 Aligned_cols=176 Identities=16% Similarity=0.124 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
....+.+..++..+....+ ....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIV-NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 3455556666666666444 4456677889999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++..+ .+...++++|++.|++.+...+...+++.|.+|+++ |++
T Consensus 81 ~~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 126 (485)
T TIGR00711 81 SLLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGR 126 (485)
T ss_pred HHHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHH
Confidence 8888765 467889999999999999999999999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
++++++....+|..++|.+++++.++.|||+.|++.+...++..++.++..+
T Consensus 127 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 127 AMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred HHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999877666555554444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-17 Score=175.65 Aligned_cols=175 Identities=15% Similarity=0.091 Sum_probs=133.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+++.+.......++..+..+.+. .+.+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAA-PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 34455555555555555555444 345677889999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.++++++ .+...++++|++.|++.+... ....+++|++|+++
T Consensus 112 ~~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------ 156 (476)
T PLN00028 112 APAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------ 156 (476)
T ss_pred HHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------
Confidence 8888777665 356778889999999888654 34567899999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh----h-----ccchHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~----~-----~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++++++.+...++|+.+++.+.+.+. + ..|||+.|++.++..++..++.++
T Consensus 157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999988777777777766665443 2 248999999887766555444443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-17 Score=170.13 Aligned_cols=171 Identities=16% Similarity=0.110 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
....+..+....+...... ..+.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.+++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLV-GLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHH
Confidence 3344555555555544444 45566788999999999999999999999999999999997 999999999999888888
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
++..+ .+...++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 84 ~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 129 (392)
T PRK10473 84 LCSLA----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVL 129 (392)
T ss_pred HHHHh----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHH
Confidence 77664 356678889999999999988999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++.+...++|..++|.+++++.+..||++.|++.++..++..++.+.
T Consensus 130 ~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 130 SLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888899999999887766555554433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=176.35 Aligned_cols=167 Identities=20% Similarity=0.262 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (549)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~ 154 (549)
++..++..++...+...++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4556667777766666665588999999999999999999999999999999999996 999999999999999855555
Q ss_pred HhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHH
Q 008896 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (549)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 234 (549)
++ .+.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 81 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~ 126 (352)
T PF07690_consen 81 FA----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL 126 (352)
T ss_dssp HH----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred hh----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence 43 245589999999999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 235 ~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
+.+..+|..++|.+++++.+..|||+.|++.++..++..++.
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 999999999999999999988999999999888877776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-17 Score=170.08 Aligned_cols=174 Identities=14% Similarity=0.111 Sum_probs=144.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
.+|..+...+..++..+..+...+. .+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~-~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPA-IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 4566666666666666666544443 4566789999999999999999999999999999999997 9999999999988
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++..+ .+...+++.|++.|++.+...+....+..|.++.++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (394)
T PRK11652 84 ILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------ 129 (394)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------
Confidence 8888777654 457788999999999998887888888899888777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
|+...+++..+..++..++|.+++++.+..|||+.|++.++..++..++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999988999999998776655444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-17 Score=170.21 Aligned_cols=177 Identities=16% Similarity=0.115 Sum_probs=145.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+.+|+.....++..+...+..+ ......+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~ 90 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSIL 90 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHH
Confidence 3445555555555665555554 334456677788999999999999999999999999999999997 99999999998
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.+. .+...+++.+++.|++.+...+...++++|.+|+++
T Consensus 91 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 138 (398)
T TIGR00895 91 LFSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF---- 138 (398)
T ss_pred HHHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh----
Confidence 888887777654 456778899999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
|++.++++..+..+|..+++.+++++.+..||++.|++.++...+..++.+
T Consensus 139 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (398)
T TIGR00895 139 --RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189 (398)
T ss_pred --hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999887654444443333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-17 Score=168.93 Aligned_cols=173 Identities=12% Similarity=0.066 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHhHHHHHhhhccchHHHHH-HHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIA-IFTTIYL 147 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~-~~~~~~~~l~~G~lsD~~~GR~~~~~-i~~~l~~ 147 (549)
..+..++..++..++...+.+.++.|+.+++|.+.++.+++.+.+ ..+..++++++|+ +||+ ||||.++ .+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV 93 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence 455667778888888877888899999999999999999987655 5566777777777 9997 9988754 5555545
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++..+++++ .+...+++.+.+.+...+...+....+..|..++++ |
T Consensus 94 ~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 139 (393)
T PRK15011 94 LACTLFAWN----------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------R 139 (393)
T ss_pred HHHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------c
Confidence 555555544 345555544444444445667777788888776554 4
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 228 --DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 --~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+...++.+.+.++|..++|.+++++.++.|||+.|++.++..++..++.+.
T Consensus 140 ~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 140 EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 344567888899999999999999999999999999887765555544444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-16 Score=167.63 Aligned_cols=196 Identities=9% Similarity=-0.039 Sum_probs=139.4
Q ss_pred ccccC-CCCCcccccCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHhHH
Q 008896 51 PVNVH-GKPIADLSKTGGW---IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLG 125 (549)
Q Consensus 51 ~~~~~-~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~ 125 (549)
..+|| |||. -|..+++. |.++...+..++ .+....+...+..++.+ ++|++..|.+++.+++.+++.++.++.
T Consensus 13 ~~~w~pe~~~-~w~~~~~~~a~r~l~~s~~~f~~-~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~ 90 (462)
T PRK15034 13 LRDWKPENPA-FWENKGKHIARRNLWISVSCLLL-AFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPY 90 (462)
T ss_pred ccCCCCCChH-HHhhcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 3344 45555444 555554444333 33333455555666655 899999999999999999999999999
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcc
Q 008896 126 GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205 (549)
Q Consensus 126 G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 205 (549)
|++.||+ |.|+++.++.++..+.+++++++... + ..+...+++.|++.|++ ++..
T Consensus 91 G~l~Dr~-G~R~v~~~~~ll~~i~~~~~~~a~~~----~-------------------~~s~~~lli~r~l~Gig-g~~f 145 (462)
T PRK15034 91 SFMVPIF-GGRRWTVFSTAILIIPCVWLGIAVQN----P-------------------NTPFGIFIVIALLCGFA-GANF 145 (462)
T ss_pred HHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHcc----c-------------------CCCHHHHHHHHHHHHHH-HHhH
Confidence 9999997 99999999999988888877764110 0 03678899999999998 6678
Q ss_pred hhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-----h-------------ccchHHHHHHHHH
Q 008896 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-----M-------------EHGWGSAFGALAI 267 (549)
Q Consensus 206 ~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~-----~-------------~~gw~~~f~i~~~ 267 (549)
+.....++++||+++ ||++++++....++|..++++++..+. . ..+|+.++++..+
T Consensus 146 ~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~ 219 (462)
T PRK15034 146 ASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVP 219 (462)
T ss_pred HHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHH
Confidence 889999999999998 999999986666666665555543322 2 3347777777666
Q ss_pred HHHHHHHHHHhh
Q 008896 268 AMGISNMLFFIG 279 (549)
Q Consensus 268 ~~~i~~~~~~~~ 279 (549)
..++..++.++.
T Consensus 220 ~~iv~~i~~~~~ 231 (462)
T PRK15034 220 LLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHh
Confidence 665555555543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-17 Score=173.36 Aligned_cols=178 Identities=13% Similarity=0.078 Sum_probs=136.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
|+.++...+...+.......+. ...+++++ +|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFA-LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHH-hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHH
Confidence 4444444444444443333233 34567765 599999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++...... ..+...+++.|++.|++.+...+.....+.|.+|+++ |
T Consensus 103 ~~~~~~~~~~~~------------------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------r 152 (438)
T TIGR00712 103 AVMLLMGFVPWA------------------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------R 152 (438)
T ss_pred HHHHHHhccccc------------------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------c
Confidence 887776543110 0245667788999999999998989999999999998 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHHHHHHh
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~-~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++++++++.+.++|+.+++.+.+.+. ...|||+.|++.++..++..++.++
T Consensus 153 g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 153 GTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877644 4568999999887776665444433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-16 Score=171.07 Aligned_cols=177 Identities=16% Similarity=0.102 Sum_probs=132.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH-HHHHHHHH-----HHHHHHhHHHHHhhhccchH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSS-NAVNNFLG-----ISQASSVLGGFLADAYLGRY 136 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~-~~~~~~~~-----~~~~~~l~~G~lsD~~~GR~ 136 (549)
++..||+.....++..+++.+....+. .+.+++.++++.++.+.+ +..+.... ...++.++.|+++||+ |||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr 86 (434)
T PRK15075 9 SRESKARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRR 86 (434)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chH
Confidence 344456677788888888888886554 556688889998776644 33332222 2236788999999997 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccC
Q 008896 137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (549)
Q Consensus 137 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (549)
++++++.+++.++.++++++.....+. ......++++|++.|++.++..++...+++|.+
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 146 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA 146 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhC
Confidence 999999999999999888762110000 000124688999999999999999999999999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHH
Q 008896 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAI 267 (549)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~ 267 (549)
|+++ |++.++++....++|..+++.+++.+. +..|||+.|++..+
T Consensus 147 p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 147 TPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred Cccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 9998 999999988888888888877776652 46799999987543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-16 Score=165.06 Aligned_cols=163 Identities=14% Similarity=0.078 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++.+++..++..++...+...++. +.+++|.+..+.+++.+.+.+...++.+++|+++||+ |||+++.++..++.++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence 4556677777877766555444444 4678999999999999999999999999999999997 9999999999999888
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++.+. .+ .++.|+++|++.++..|...+++.|.+|+++ |++
T Consensus 82 ~~~~~~~----------------------------~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~ 124 (393)
T PRK11195 82 CLLMLFG----------------------------IH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVK 124 (393)
T ss_pred HHHHHHH----------------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 7776553 22 2678899999999999999999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (549)
+.++......+|..+||.++|++.+.. |+..+++.+...+++
T Consensus 125 a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 125 ANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999998753 776766555444333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-19 Score=183.60 Aligned_cols=180 Identities=18% Similarity=0.230 Sum_probs=162.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+..++.+..++++++++++.-|.+.. ...-+++.+|.++...+++.+.+.+...+..++.|+|+||| .|++++.++..
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~ 106 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF 106 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence 34456788889999999999987765 45677889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
++.+.+++.+++ ...+++.+.|.+.|+|.+.+.+..+++++|.||...
T Consensus 107 iW~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~---- 154 (493)
T KOG1330|consen 107 IWTLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK---- 154 (493)
T ss_pred HHHHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh----
Confidence 999999999987 578999999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHhhc
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
|++.++++|++.++|.++|.++++++....+ |||+|++.++..++..++.++..
T Consensus 155 --Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 155 --RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred --hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence 9999999999999999999999999988877 99999998887766665555443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-17 Score=169.86 Aligned_cols=154 Identities=13% Similarity=0.059 Sum_probs=134.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
..+.+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.++
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------------- 80 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS------------- 80 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh-------------
Confidence 3445688899999999999999999999999999999999997 99999999999999998888776
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH-HH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TL 248 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p-~i 248 (549)
.+.+.++++|++.|++.+...+...++++|.+|+++ |++.+++.+.+.++|..++| .+
T Consensus 81 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~ 139 (379)
T TIGR00881 81 ---------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLV 139 (379)
T ss_pred ---------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHH
Confidence 467889999999999999999999999999999888 99999999999999999999 57
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 249 ~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++.+.+..+|++.|++.++..++..++.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 140 LFGIAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 777777889999998877665554444443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-16 Score=162.53 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=129.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 008896 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (549)
Q Consensus 94 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (549)
+.+.+++|.+..+.++..+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.++
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~----------------- 91 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV----------------- 91 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 346789999999999999999999999999999999997 99999999998888888777665
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
.+.+.++++|++.|++.+...+...+++.|.+++++ +++.++.......+|..++|.+++++.
T Consensus 92 -----------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 92 -----------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred -----------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999988887888889999999877 888888888888899999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHh
Q 008896 254 MEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 254 ~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+..||++.|++..+..++..++.+.
T Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 155 NHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877766655544433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-16 Score=161.21 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
..+.++.+ .+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++..+
T Consensus 10 ~~p~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~----------- 76 (377)
T PRK11102 10 YLPALPVI-AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA----------- 76 (377)
T ss_pred HhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 33445544 467999999999999999999999999999999997 99999999999999988888765
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
.+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+....+|..++|.
T Consensus 77 -----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~ 133 (377)
T PRK11102 77 -----------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPI 133 (377)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999888 999999999999999999999
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+++++.+..||++.|++.++..++..++..+
T Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 134 IGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999899999998877666555544433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-16 Score=166.85 Aligned_cols=179 Identities=9% Similarity=-0.092 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+...+..++..++++.+.+.++.|+++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++.++..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVL 89 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 556666777788887777889999999999999999999999999999999999999999997 9999998877665554
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
...+......+.... ......+++.++.|.+.....+.. .++.+... +.++.
T Consensus 90 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~g~ 141 (420)
T PRK09528 90 FGPFFIYVFAPLLQY--------------------NILLGAIVGGIYLGFGFLAGAGAI----EAYIERVS----RRSGF 141 (420)
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhhhhhccchhhh----hhHHHHHH----hhccc
Confidence 432221100000000 011111222333333333322333 23322111 12566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.++......++|..++|.+++++.+ .+|++.|++.++..++..++.+.
T Consensus 142 ~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 142 EYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred cchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence 7777777889999999999998876 58999998877766655555444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-15 Score=159.94 Aligned_cols=159 Identities=7% Similarity=-0.110 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH-HHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YLAGL 150 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l-~~~g~ 150 (549)
+.+.+..++..+++-...++++.|+ +++|++..+.+++.+.+.+...+++++.|+++||+ ||+........+ ..+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence 3355556666666545567777777 57899999999999999999999999999999997 985433211111 11111
Q ss_pred H-HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 151 T-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 151 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
+ .+..+ .+.+.+++.|++.+.+.+...|...++..|. .++ |++
T Consensus 85 ~~~~~~~----------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~ 128 (382)
T TIGR00902 85 AAFSAGA----------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGL 128 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCC
Confidence 1 11111 4677888899999998888888887776543 234 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~ 268 (549)
.++......++|..++|.+++++.++.|||+.|++..+.
T Consensus 129 ~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 129 DYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 899999999999999999999999999999999876554
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-22 Score=212.13 Aligned_cols=344 Identities=15% Similarity=0.124 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchh
Q 008896 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (549)
Q Consensus 106 ~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (549)
..++..+.+.++..+|.+++|+++||+ |||++++++.++++++.++..++... .
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------------~ 100 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-------------------------N 100 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-------------------------c
Confidence 456788999999999999999999997 99999999999999999988876210 1
Q ss_pred hHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHH
Q 008896 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAF 262 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~---~gw~~~f 262 (549)
+...+.++|++.|++.|+..+....++.|..|++. |+...++.+....+|..++..++-.+.+. .+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999999999999999999999999999 99999999998888888887766544332 4599988
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCc--
Q 008896 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD-- 340 (549)
Q Consensus 263 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~-- 340 (549)
++..+..++.++... .+||||+| ++.+++.+++.+..+++.+.+.
T Consensus 175 ~~~~~~~l~~~~~~~--------------------------------~~pESP~w-L~~~~~~~~A~~~l~~~~~~~~~~ 221 (451)
T PF00083_consen 175 IFGAIPSLLVLLLRF--------------------------------FLPESPRW-LLSKGRDEEAEKVLRKLRGKEIED 221 (451)
T ss_pred ccccccccccccccc--------------------------------ccccccce-eccccccccccccccccccccccc
Confidence 877766554433322 26899999 9999988888888877554321
Q ss_pred cchhhHhhhhhccccCCCCCCcccCchhHHHHHHHHhhchhhhHHHHHH-HHhhhhhhHHHHH-HhhhccC--C------
Q 008896 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN-VILTEFLTLSVQQ-AYTMNTH--M------ 410 (549)
Q Consensus 341 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~~~~~~~~~~~~-~~~~~~~t~~~~q-~~~~~~~--~------ 410 (549)
.+..+.-....+.+ ..+..|+...+... .+|+++..+.+...+.... ....++.+.+..+ +...+.. .
T Consensus 222 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 299 (451)
T PF00083_consen 222 EEIEEIKAEKKESQ-ESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVN 299 (451)
T ss_pred cccccccccccccc-ccceeeeecccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11111111111100 00112322211110 1233333333332222111 1111111111111 1111100 0
Q ss_pred ------------CCCCCCCch-HHHHHHHHHHHHH--H------------HH--H--------------HHHHHHHhhcc
Q 008896 411 ------------GHPRGASQL-QRVGIGLAVSILS--V------------IW--A--------------GLLEFLYEEAP 447 (549)
Q Consensus 411 ------------~~~~~~~~l-~~i~~G~~~~~~~--~------------~~--a--------------~~~~~~~~~~P 447 (549)
+.+|+.... ..+........++ . +. . ..+.+..|.+|
T Consensus 300 ~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfP 379 (451)
T PF00083_consen 300 FLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFP 379 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccc
Confidence 222221111 0000000001010 0 00 0 12234468899
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 008896 448 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 527 (549)
Q Consensus 448 ~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~ 527 (549)
.+.|+.++|+....+++++++++.+.+.+.+..+ ....|++.++++++..++.+++.+++++
T Consensus 380 t~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~------------------~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 380 TKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG------------------GWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------------------ccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 9999999999999999999999988777654221 1245778888888888888899999999
Q ss_pred ccccCCC
Q 008896 528 RSEQKHG 534 (549)
Q Consensus 528 ~~~~~~~ 534 (549)
++.+|.+
T Consensus 442 ~~l~ei~ 448 (451)
T PF00083_consen 442 KTLEEIQ 448 (451)
T ss_pred CCHHHHH
Confidence 9887644
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-17 Score=175.39 Aligned_cols=141 Identities=15% Similarity=0.128 Sum_probs=128.4
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccccccc
Q 008896 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (549)
Q Consensus 97 ~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (549)
.+.++.+.....+..+++.+|..+|+++.|++||+ +|||+++++++++.+++.++.+++
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a-------------------- 168 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA-------------------- 168 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 35667788888999999999999999999999999 599999999999999999888887
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
.+...+++.|++.|++.++...+...+++|.++++. |+...++ ......++.+++.+++++..
T Consensus 169 --------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~-- 231 (521)
T KOG0255|consen 169 --------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR-- 231 (521)
T ss_pred --------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--
Confidence 689999999999999999999999999999999999 9999999 88888899999999999887
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 008896 257 GWGSAFGALAIAMGISNML 275 (549)
Q Consensus 257 gw~~~f~i~~~~~~i~~~~ 275 (549)
+|||.+++..+..++.+++
T Consensus 232 ~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 232 DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8999999988877766655
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-15 Score=179.52 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA--DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~--~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+.+...++..++..+...+....+..++...++.+.. ..+++.+++.++..++.+++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 3455555666666666555555566677667776543 457888999999999999999999997 9999999998877
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
+++.++..++... .+.+.++++|++.|++.+...+...++++|.+|+++
T Consensus 88 ~~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------ 136 (1146)
T PRK08633 88 VGLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------ 136 (1146)
T ss_pred HHHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------
Confidence 7766655543210 357889999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~ 255 (549)
|+++++++..+.++|.++|+.+++++...
T Consensus 137 r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 137 LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998775
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-15 Score=159.75 Aligned_cols=154 Identities=13% Similarity=-0.009 Sum_probs=125.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
....+..+.+..+...+....... +.+.+++++|.++.+.++..+.+.++..++.++.|+++||+ |||+++.++..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~-~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 344566666666666666644444 45566999999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++..+... .+...++++|++.|+|.|...+...++++|..++++
T Consensus 102 ~~~~~l~~~~~~a-------------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------ 150 (438)
T PRK10133 102 ALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------ 150 (438)
T ss_pred HHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------
Confidence 9999876422110 467889999999999999999999999999766555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
|...++++.....+|..++|.+++.+.
T Consensus 151 ~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 151 GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666688888888899999998877654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-15 Score=161.86 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHHH-HHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWT-IAIF 142 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~----~GR~~~-~~i~ 142 (549)
||+.+.+++..+...+..+.....++.|+. +.|.+..+.+.. +..... +++.+++|+++||+ +||||. +.++
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~ 87 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLAT 87 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHH
Confidence 445666777777777777767777777765 569998888875 222222 36789999999994 298886 5566
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
.++..++...+++.. |. .+.+.+.+.+++.+++.+...+...++.+|++|+++
T Consensus 88 ~i~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~-- 140 (491)
T PRK11010 88 QLLLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE-- 140 (491)
T ss_pred HHHHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh--
Confidence 666666666665531 11 357778888999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHH
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
|+++.++...+..+|..+++.+++++.+ ..|||+.|++.++..++..+..+
T Consensus 141 ----rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 ----RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 57999999988876665544433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-15 Score=157.65 Aligned_cols=178 Identities=10% Similarity=-0.108 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+|......++...+...+.+.++.|+++++|.+..+.+++.+.+.++..++.+++|+++||+ |||+.++++.....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 567777888888888888889999999999999999999999999999999999999999997 9999998887766554
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
...+......+... ......+++++++.|++.+...+....+..|..+ + ++.
T Consensus 82 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~ 133 (396)
T TIGR00882 82 FAPFFIYVFGPLLQ--------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF 133 (396)
T ss_pred HHHHHHHHhhhHHH--------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence 44322211000000 0123345666788888888888888777766432 2 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
.++......++|..++|.+++.+.+ .+|++.|++.++..++..++.+
T Consensus 134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 5566667778999999999998765 5999999988776665554443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-14 Score=157.36 Aligned_cols=178 Identities=13% Similarity=0.088 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+..++...++.+++.......++ ++..++.-|+...+++.....+-..+..+++|.++||+ .|||+++.+.++..+.
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~-wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALA-WLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV 88 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence 455566777777777754444444 44446677888888888888888999999999999997 9999999999888776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+++...... .+.+.+++.-++.|++.+...|...+++.|+.|+++ ...
T Consensus 89 ~~~L~~l~~~~~-----------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~ 139 (524)
T PF05977_consen 89 ALLLAVLAFFGL-----------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPA 139 (524)
T ss_pred HHHHHHHHHhCc-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHH
Confidence 665554422111 467778888899999999999999999999999988 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+.++.....|+.-.+||.++|.+....|-.+.|.+.+++.++.++.+..
T Consensus 140 A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~ 188 (524)
T PF05977_consen 140 ANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR 188 (524)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998889999999888776665544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-15 Score=148.84 Aligned_cols=183 Identities=14% Similarity=0.094 Sum_probs=149.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+.++|+.+.-.+.... .+..+.+...+.+++.+++|+|+.|.++++.+..+...+..++-|++.||+ |-|++..++++
T Consensus 10 ~~~~~~L~~S~~af~v-~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLSTLAFDV-GFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence 4445555554444444 444445667788999999999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+.++-.+.++++... .+.+.+++..+++|++.+ ..+...+.++..||+++
T Consensus 88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~---- 137 (417)
T COG2223 88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK---- 137 (417)
T ss_pred HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcccc-eehcccccccccCChhh----
Confidence 888888888776331 344688888999999755 45778889999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g---w~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
.|.+.+++. ..|+|..+..+++..+....| |+.+.++..+..++..+.+++..++
T Consensus 138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 899999999 899999999999999998888 9999888888888877777665544
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-15 Score=155.53 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
.+..++..++.....+...+.++.++++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 44556666666667766666666679999999999999999999999999999999999997 99999999999999998
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchh-hHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
++++++ . +.+.++++|++.|++.+. .+...++++|.+|+++ |++
T Consensus 82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~ 126 (366)
T TIGR00886 82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT 126 (366)
T ss_pred HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence 888776 4 677888999999998664 4567889999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA 264 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~----------~~gw~~~f~i 264 (549)
..+++....++|..+++.+++.+.. ..+||+.|++
T Consensus 127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 9999887778888888777766654 2489999944
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=173.39 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=111.7
Q ss_pred HHHhcCCCh-HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH--HHHHHHHhhhhcccCCCCCccccc
Q 008896 96 MFYVMHKSF-ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA--GLTGITLCATMKVFMPNQDNCDRI 172 (549)
Q Consensus 96 l~~~l~~s~-~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 172 (549)
++...+.+. ...++..+++.+...++.+++|+++||+ |||+++.+...+.++ ...+..+. .
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~-~-------------- 105 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFH-L-------------- 105 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHH-H--------------
Confidence 333444433 3456778889999999999999999997 999986443222222 11111111 0
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008896 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (549)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l 252 (549)
.+.+.++++|+++|++.+...|...+++.|++++++ |+.++++.+.+.++|.++||.++|++
T Consensus 106 ------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l 167 (1140)
T PRK06814 106 ------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLA 167 (1140)
T ss_pred ------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999988 99999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHHHHHH
Q 008896 253 QMEHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 253 ~~~~gw~~~f~i~~~~~~i~~~~ 275 (549)
....||++.|.+.+++.++++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~ 190 (1140)
T PRK06814 168 TISGNFVILVALLMGIAVLGWLA 190 (1140)
T ss_pred HhccccHHHHHHHHHHHHHHHHH
Confidence 99999999985444444444333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-14 Score=149.74 Aligned_cols=163 Identities=15% Similarity=0.021 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
...+.+..++...++-...++++.|+++++|++..+.+++.+.+.++..++++++|+++||+.|||+++.++.++..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 4 TAKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34566666777777766678999999999999999999999999999999999999999997234778888887776666
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhc--------ccCCCCChh
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA--------DQFDERSKD 222 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a--------d~~~~~~~~ 222 (549)
.+..+. .+...+++.+++.+++.+...+...+... |......
T Consensus 84 ~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~-- 133 (418)
T TIGR00889 84 FFAAQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP-- 133 (418)
T ss_pred HHHHHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC--
Confidence 665543 35666778888888877766665554432 2222122
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 008896 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~ 274 (549)
|.+.++ .+|.+++|.+++.+.....|. +|++.++..++..+
T Consensus 134 ----~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~ 174 (418)
T TIGR00889 134 ----PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGV 174 (418)
T ss_pred ----Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHH
Confidence 445444 378888888888884433454 35555544444443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-15 Score=165.12 Aligned_cols=209 Identities=14% Similarity=0.087 Sum_probs=154.2
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 008896 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (549)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~ 143 (549)
+..+++.+...+...++......++.....+.+.++++++..+.+++.+.+.++..++.++.|+++||+ ||++.+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ 105 (633)
T TIGR00805 27 LFSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGC 105 (633)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecH
Confidence 344565554555544454455556777778889999999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhhhcccC--------------CCCCccccccc-------ccCCCCCcc--hhhHHHHHHHHHHHHHh
Q 008896 144 TIYLAGLTGITLCATMKVFM--------------PNQDNCDRISQ-------LLGSCEPAK--SWQMLYLYTVLYITGFG 200 (549)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~--------------~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~l~g~g 200 (549)
+++.+|.+++++.-+...-. ...+.|...+. ....|...+ ......++++|++.|+|
T Consensus 106 ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG 185 (633)
T TIGR00805 106 AIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIG 185 (633)
T ss_pred HHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhcc
Confidence 99999999988753211000 00112310000 001232222 12356788999999999
Q ss_pred ccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------------ch
Q 008896 201 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GW 258 (549)
Q Consensus 201 ~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~----------------------gw 258 (549)
.+...+...+++.|.+|+++ |+..+++++.+..+|+++|+++++++.+.+ +|
T Consensus 186 ~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaW 259 (633)
T TIGR00805 186 ATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAW 259 (633)
T ss_pred CCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHH
Confidence 99999999999999999998 999999999999999999999999887532 27
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008896 259 GSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 259 ~~~f~i~~~~~~i~~~~~~~~ 279 (549)
+.+|++.+++.++..+.+++.
T Consensus 260 wl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 260 WIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 777887776665555444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-15 Score=152.81 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCC
Q 008896 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 181 (549)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (549)
+++...+.+.....++.++|+++.||++|++ |||+++...++++++++++++++- |..
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~---------------------~~~ 138 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSV---------------------GTT 138 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCC---------------------CCC
Confidence 5567778888889999999999999999986 999999999999999998666541 122
Q ss_pred cchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHhhc--
Q 008896 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL----SVTVGAIVAFTLVVYIQME-- 255 (549)
Q Consensus 182 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~----~~~ig~~i~p~i~~~l~~~-- 255 (549)
+...-+.++...|+++|+|.|+=+|+..+..+|....+. ||...+.... +...|+.++-++.+-+...
T Consensus 139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~ 212 (538)
T KOG0252|consen 139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN 212 (538)
T ss_pred CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence 222356788899999999999999999999999998888 8888777443 3344444444333333211
Q ss_pred ---------cchHHHHHHHHHHHH
Q 008896 256 ---------HGWGSAFGALAIAMG 270 (549)
Q Consensus 256 ---------~gw~~~f~i~~~~~~ 270 (549)
.=||..|.+.++..+
T Consensus 213 ~~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 213 GPSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHH
Confidence 128988877665544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-15 Score=152.40 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHH--HHHH---HHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 008896 81 ERMAYFGLSVNMVTFMFYVMH--KSFADSSNAVN--NFLG---ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 81 ~~~~~~~~~~~l~~yl~~~l~--~s~~~a~~~~~--~~~~---~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~ 153 (549)
+.+..+.+. .+..++.++.. .++++.+...+ .+.. +..++.++.|+++||+ |||+++.++.++..++.+++
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 5 EWFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred hHHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHH
Confidence 444444333 45556666544 33444443333 2333 3346789999999997 99999999999999998888
Q ss_pred HHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH
Q 008896 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
+++...... .......++++|++.|++.+...+....+++|.+++++ |++..++
T Consensus 83 ~~~~~~~~~--------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~ 136 (394)
T TIGR00883 83 GLLPSYATI--------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSF 136 (394)
T ss_pred hhCCChhhh--------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHH
Confidence 775221000 00112357889999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHHHHH
Q 008896 234 FYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 234 ~~~~~~ig~~i~p~i~~~l~--------~~~gw~~~f~i~~~~~~i~~ 273 (549)
.+.+..+|..+++.++..+. +..+||+.|++.++..++..
T Consensus 137 ~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 137 QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 99999999999998877654 35689999987766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-14 Score=148.41 Aligned_cols=173 Identities=11% Similarity=0.023 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++.+.+..++..+.. ++...+.+.+++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.++
T Consensus 4 ~~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 3444555555555555 4555667788999999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++..+.. ..+.+.++++|++.|+|.|...+...+++.+..|+++ |++
T Consensus 82 ~~l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~ 130 (410)
T TIGR00885 82 AFLFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATR 130 (410)
T ss_pred HHHHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHH
Confidence 877654321 0367888999999999999999999999999998887 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--------------------------ccchHHHHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~--------------------------~~gw~~~f~i~~~~~~i~~~~ 275 (549)
..++.+...++|..++|.+++.+.. ..+||++|.+.++..++..++
T Consensus 131 ~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 131 RLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999887742 246999998777655544333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=160.60 Aligned_cols=178 Identities=22% Similarity=0.231 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chH-HHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRY-WTIAIFTTIYL 147 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~-GR~-~~~~i~~~l~~ 147 (549)
.+|.+.++.++..+..|++..|.|.|+.+..|++..++++..++|..+...++++.||+|||+| ||| ++-++++++.+
T Consensus 253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~ 332 (448)
T COG2271 253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT 332 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999 766 45566666666
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+.+..+ |. .|..+..++++++|+...+++-.+.....|..|.+. -
T Consensus 333 ~~~~~~w~~-------~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------a 380 (448)
T COG2271 333 ASLVLYWLA-------PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------A 380 (448)
T ss_pred HHHHHHHcC-------CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------c
Confidence 677666665 21 366788888999999999999888888999999888 7
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 228 DRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 228 ~~~~~~~~~~~~i-g~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|++.++..++..+ |+.++....+++.|.+||...|.+..++.+++.++++..
T Consensus 381 GtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 381 GTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred cchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 7777777777666 899999999999999999999998877777766665543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-14 Score=146.50 Aligned_cols=156 Identities=8% Similarity=-0.023 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH----HHHHHHHHHHHHHHHHH
Q 008896 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~----~~~~i~~~l~~~g~~~~ 153 (549)
.++..++...+.+.++.|+ +++|.+..+.+++.+.+.+...++.+++|+++||+ ||+ +.+.+...+. .+.+
T Consensus 13 ~~~~~~~~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHH
Confidence 3444455555667778888 56899999999999999999999999999999997 984 3322222111 1111
Q ss_pred HHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH
Q 008896 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
... . .+.+.+++.|++.|++.+...+...++..|.. ++ |++.++.
T Consensus 88 ~~~-~--------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~ 132 (382)
T PRK11128 88 WFG-A--------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGK 132 (382)
T ss_pred HHh-c--------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcch
Confidence 111 0 36778888999999999988888888777752 33 6677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 008896 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (549)
.....++|..+||.+++++.++.|||..|++.++..++..
T Consensus 133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 7777789999999999999999999999987775544433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=153.83 Aligned_cols=175 Identities=16% Similarity=0.149 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHH-HHHHHHHHHHHHHHHHH
Q 008896 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT 154 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~-~~~i~~~l~~~g~~~~~ 154 (549)
+...+....+..+++.|+++++|++..+++++.++..+..++..++.|+++||. +|||| .++++..+..++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 344455555667899999999999999999999999999999999999999984 58754 67777777777777665
Q ss_pred HhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC-CChhhhhhhhhHHHH
Q 008896 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNF 233 (549)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~~~~~ 233 (549)
.... .. .......+++.+++.+++.+.......++.+|..++ ++ |++..++
T Consensus 89 ~~~~---~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~ 140 (437)
T TIGR00792 89 TTPD---FS-------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTF 140 (437)
T ss_pred hCCC---CC-------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHH
Confidence 5311 00 002355666777788888888888888888998754 44 8899898
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 234 FYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 234 ~~~~~~ig~~i~p~i~~~l~~-------~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
.....++|..+++.+.+.+.. ..||++.+.+.++...+..++.+...+
T Consensus 141 ~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 195 (437)
T TIGR00792 141 RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTK 195 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 888888888777776655542 458999988877766665555444333
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-13 Score=143.43 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHH-HHHHHHHHHHHH
Q 008896 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAG 149 (549)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~----~GR~~-~~~i~~~l~~~g 149 (549)
+...+...+.+.-....+|.|+.+ .|++.++.+++..+... .+..+++|+++||+ +|||| .+.++.++..++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 344555555555566678888864 59999999988655554 57889999999996 27765 677777777777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
+.++.+.. +. .+.+.+++..++.+++.+...+...++.+|.+|+++ |++
T Consensus 82 ~~~l~~~~------~~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~ 130 (402)
T PRK11902 82 IAAMAFCP------PH-------------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGA 130 (402)
T ss_pred HHHHHhcC------cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhH
Confidence 77665531 00 345666666677788888899999999999999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~-~gw~~~f~i~~~~~~i~~~~ 275 (549)
+.++...+..+|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 131 ~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 131 GAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998885 59999999877765554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=149.31 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=121.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
..+.+.+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+ ..
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~------------- 84 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA------------- 84 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence 4456677889999999999999999999999999999999997 99999999988877776655 32
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.+...+++.|++.|++.+...+..+....|.++ ++ |++.+++++.+.++|..+++.++
T Consensus 85 ---------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 85 ---------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999999999888888888888886 46 89999999999999999999999
Q ss_pred HHHhhcc--chHHHHHHHHHHHH
Q 008896 250 VYIQMEH--GWGSAFGALAIAMG 270 (549)
Q Consensus 250 ~~l~~~~--gw~~~f~i~~~~~~ 270 (549)
+.+.+.. +||+.|.+.++..+
T Consensus 143 ~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 143 VPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Confidence 9887765 39988876655433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-14 Score=152.61 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=131.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+|+.........++..+.+|++..++|.|+++.+|++..++........++..++.+++|+++||+ |||+++.++.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 455554444555666788889999999999989999988888877888888999999999999997 9999988887654
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++..... . .+...+++++++.+++.++..+....+..|.+|++.
T Consensus 327 ~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------ 375 (490)
T PRK10642 327 FVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------ 375 (490)
T ss_pred HHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------
Confidence 443333222100 0 235567778888888777777778888899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++++++.+....+++.++|.+.+++.+..+ |+..+++..+..++.++..++
T Consensus 376 Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 376 RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999998444455667889999999887654 676666555554444444433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-12 Score=136.23 Aligned_cols=154 Identities=12% Similarity=0.031 Sum_probs=134.8
Q ss_pred HHHHHHHHHHhcCCChHH-HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 89 SVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 89 ~~~l~~yl~~~l~~s~~~-a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
.+.+.+|+.+++|++.++ .+.+.+.|..++.++.+++|+++||+ |-|+++.++.+...+..+++.++
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa----------- 112 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG----------- 112 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH-----------
Confidence 355678999999999999 99999999999999999999999997 99999999999999999988886
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
.+...+.+.|++.|++.|+.. +...++..++|+++ |+++.+++..+..+|.+++++
T Consensus 113 -----------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~ 168 (511)
T TIGR00806 113 -----------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSV 168 (511)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999 99999999999988 999999999999999999999
Q ss_pred HHHHHhhccchHHHHHH---HHHHHHHHHHHHHhh
Q 008896 248 LVVYIQMEHGWGSAFGA---LAIAMGISNMLFFIG 279 (549)
Q Consensus 248 i~~~l~~~~gw~~~f~i---~~~~~~i~~~~~~~~ 279 (549)
+++++ ..+||++-+.+ ......+++++.++.
T Consensus 169 L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 169 LGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 99994 46799986643 444455555555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=136.54 Aligned_cols=170 Identities=13% Similarity=0.019 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
....+.+-+....|.+..+..++......+..++...+|.++|++ |||+...+......+.-++-..+
T Consensus 96 ~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s----------- 163 (528)
T KOG0253|consen 96 LLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS----------- 163 (528)
T ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC-----------
Confidence 334445556677888888999999889999999999999999997 99998877765555444433332
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
+|...+++.|.+.|+|.|+ .|...++-.|..|..+ |....-.. ....+|.++...
T Consensus 164 -----------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~ 218 (528)
T KOG0253|consen 164 -----------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEAL 218 (528)
T ss_pred -----------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHH
Confidence 5788899999999999999 8999999999999888 77776665 556788888887
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhh
Q 008896 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294 (549)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 294 (549)
++=.+..+.||||-.........+...+.++..+.-|..-.+|++..
T Consensus 219 law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k 265 (528)
T KOG0253|consen 219 LAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK 265 (528)
T ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH
Confidence 77777788899998776665544444444443333333334454433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.5e-13 Score=133.42 Aligned_cols=152 Identities=16% Similarity=0.084 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
....+...-++..+.. .....+.+.+++.++++..+++++...+..++.++++..|++.+|+ |+|+.++++..++++|
T Consensus 14 ~~v~~t~lFfl~G~~~-~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg 91 (422)
T COG0738 14 AFVLLTSLFFLWGFIT-CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVG 91 (422)
T ss_pred HHHHHHHHHHHHHHHh-hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 3333333334444443 4667789999999999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++.=++. ..+...++++++++|.|.+......+++++.+.++++ -..
T Consensus 92 ~~lF~pAa~-------------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~ 140 (422)
T COG0738 92 AALFWPAAS-------------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAF 140 (422)
T ss_pred HHHHhhhhh-------------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHH
Confidence 988864322 1577889999999999999999999999999999876 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
-+++.+..+.+|+.++|.+++++..
T Consensus 141 rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 141 RLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6778888889999999999998766
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-13 Score=135.69 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=104.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCc
Q 008896 103 SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182 (549)
Q Consensus 103 s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (549)
+..-++.+-+.|.+...+..++.|.+||++ |||+++++|.+..++.+++.+.+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S-------------------------- 118 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS-------------------------- 118 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 445678889999999999999999999997 99999999999999988888876
Q ss_pred chhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 183 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
.|...++++|++.|+..|-. ..+-++++|.+++++ |+.+++....+..+|..+||.+++++..
T Consensus 119 --~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 --RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 57777888899999998764 678899999999988 9999999999999999999999999987
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=9e-13 Score=142.00 Aligned_cols=175 Identities=8% Similarity=-0.028 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTT 144 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~G-----R~~~~~i~~~ 144 (549)
....+....+.+.+. +.+...+.+++.+++|++.++.+...+...+...+-++ +|+++|++ + ||+.+.++.+
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL 103 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence 344555577888887 67777888999999999999999888988888888776 99999997 6 6777777765
Q ss_pred HHH-HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh
Q 008896 145 IYL-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 145 l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
+.. +....++.. + .......+.+++.+++.+....+..++..|..+ ++++
T Consensus 104 l~~~~~~~~l~~~-------~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~- 154 (468)
T TIGR00788 104 LGSAILYGLLPGK-------V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS- 154 (468)
T ss_pred HHHHHHHHhcccc-------c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC-
Confidence 542 222111110 0 123334447788999999999999999999998 4421
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.++...++.+.+.++|..+|+.++|++.+..+|+..|++.++..++..+..++
T Consensus 155 --~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~ 207 (468)
T TIGR00788 155 --AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL 207 (468)
T ss_pred --cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 13445566677778999999999999999999999999887776666444333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.5e-12 Score=133.27 Aligned_cols=198 Identities=12% Similarity=0.056 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhh---ccchHHHHHHH-HHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA---YLGRYWTIAIF-TTI 145 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~---~~GR~~~~~i~-~~l 145 (549)
.++.+....+...+++-...+++++|+ +++|.+....+.+..+..+...+..++.|++||| .+||||.++++ .+.
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 445555666666777755666666665 6899999999999999999999999999999995 24999998875 555
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.++++++++.+.....+... . ............++++..+..++....++...++++|++|+++++
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~--- 149 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR--- 149 (477)
T ss_pred HHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH---
Confidence 55566666554221110000 0 000000011234455555666788888888999999999988621
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH--hhc-------------cchHHHHHHHHHHHHHHHHHHHhhcccc
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYI--QME-------------HGWGSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l--~~~-------------~gw~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (549)
++.+.++.....++|..+|+.++++. .+. .+.++.|++.++..++..++.++..+++
T Consensus 150 -~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 150 -TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 36789999999999999999998875 221 1578899988887777777666655543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=138.74 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=136.5
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCC
Q 008896 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (549)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (549)
.++-++++.+++...+.+...+..++.|.+.||+ |+|-.++++++++...++++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 3556778899999999999999999999999997 99999999999999999999986
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
.++++++++|.++|+|.+....+..++++|.||++.. |++.+++..-...+|-.+||.++|.+.+..|.
T Consensus 157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 4678999999999999999999999999999998874 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 008896 259 GSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 259 ~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (549)
+.+|.+.++..++...+-++..+.+
T Consensus 226 ~aPFlVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 226 SAPFLVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHheeCcc
Confidence 9999999988888777666655443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=141.81 Aligned_cols=174 Identities=15% Similarity=0.078 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
|.+.+..|+..+..+++.. .+...+.++++.+..+.+++.++......+..++.+.+.||+ |.|.+.+++.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 4555555555555555332 345677889999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHH-HHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
|+++..++ .+.+.+++.. ++.|+|.|+.+......++..|+. + |
T Consensus 124 g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------R 168 (509)
T KOG2504|consen 124 GLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------R 168 (509)
T ss_pred HHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------H
Confidence 99999887 4566666554 568999999998888888877764 3 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
+.+.++-..+..+|..+=|.+..++.+..|||+.+++.....+-..+.....++
T Consensus 169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888888888889999999999999999999999998877766555555555444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-12 Score=140.91 Aligned_cols=150 Identities=15% Similarity=0.112 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
....+++..++|-++ ...++.+.+.++..+..++.|.|||.+ |||..++++.++.++|.++++.+
T Consensus 64 a~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 456678999998864 456777889999999999999999975 99999999999999999998865
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
++...++.+..+.|+|.|... .....++|..|.+. |..+..+......+...++|.++
T Consensus 129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia 186 (599)
T PF06609_consen 129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA 186 (599)
T ss_pred ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence 678889999999999976665 55666899999888 88887777666666666788888
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 250 VYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
..+..+.+|||.|++.++...+++++.
T Consensus 187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 187 QLFAAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HHhccCCCcchHHHHHHHHHHHHHHHH
Confidence 777777899999999888766665443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-12 Score=134.81 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHHHH-HHHHHHHHHHHHHHHHhhhhccc
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~----~GR~~~~-~i~~~l~~~g~~~~~~~~~~~~~ 162 (549)
+...+.+.+.+++|++.++.+..... .+...+ .+++|+++||+ +||||.+ +++.++..+.+..+++...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 34445566677899999999988644 333333 78999999997 4899975 5566666666555544310
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 008896 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 242 (549)
..+...+....++.+++.+...+...++++|.+|+++ |+.+.++...+.++|.
T Consensus 80 ---------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~ 132 (356)
T TIGR00901 80 ---------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM 132 (356)
T ss_pred ---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence 0345556666667788888888999999999999888 9999999999999999
Q ss_pred HHHHHHHHHHhhccc--------hHHHHHHHHHHHHHHHHHHHh
Q 008896 243 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 243 ~i~p~i~~~l~~~~g--------w~~~f~i~~~~~~i~~~~~~~ 278 (549)
.+++.+++++....| ||..|++.++..++..++.++
T Consensus 133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888 999999888776665554443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-11 Score=126.66 Aligned_cols=177 Identities=11% Similarity=0.012 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH--HHHHHHHHH-HHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQ-ASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~--~~~~~~~~~-~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
...+....+.+.+.+..+.+.+|.|++ +.|.+.++.+.. ..+...... .+|++.++++||+ ||||.+++...+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 445566677777777666677777775 679999999986 344455554 4444557789986 99998766653322
Q ss_pred H-HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 148 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
. ....+.... +. .....+++...++.++..+...+...++..|..++++
T Consensus 81 ~~~~~~~~~~~------~~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------ 130 (390)
T TIGR02718 81 SACLASLALVG------PD------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------ 130 (390)
T ss_pred HHHHHHHHcCC------cc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence 2 222222110 00 0112233444455566667777777777778777666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
++...+....+..+|..+|+.+.+++.++.|||..|++.++..++..+..++.
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777778888899999999999999999999999998887766655554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=141.22 Aligned_cols=177 Identities=16% Similarity=0.078 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+.+|.+.+..++....++++..++|.|+++.+|++..++++....+.++..++.+++|+++||+ |||+.+.+...+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 3577777888888888888889999999999999999999999989999999999999999997 998877665544443
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+..++.+... .+.....+.+++.|++..+..........|.+|++. |+
T Consensus 337 ~~~~~~~~~~--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g 384 (467)
T PRK09556 337 IFTLGVYQHA--------------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IG 384 (467)
T ss_pred HHHHHHHHhc--------------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HH
Confidence 3322222100 234445566777776554444444566779999988 99
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHh
Q 008896 229 RFFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~i-g~~i~p~i~~~l~~------------~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++.++.+...++ |+.++|.+.|++.+ ..||+..|++..++.+++.++.++
T Consensus 385 ~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 385 VANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999888886 77999999999999 678999998887777666555443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=132.79 Aligned_cols=182 Identities=10% Similarity=0.044 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchH-HHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRY-WTIAIFTTIYL 147 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~-~~~~i~~~l~~ 147 (549)
+.-.+..+...+....+..+++.|+++.+|++...++.+..+..+..++.-++.|+++||. +||| +.++++.+...
T Consensus 12 ~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~ 91 (444)
T PRK09669 12 IGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFG 91 (444)
T ss_pred HhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHH
Confidence 3333445555666666778899999999999999999999999999999999999999994 4875 55556666666
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+..+++... |.... ......+++..++.+++.........++.+|+.++.++ |
T Consensus 92 i~~~l~f~~---p~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R 144 (444)
T PRK09669 92 VVCLLTFYT---PDFGA-------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----R 144 (444)
T ss_pred HHHHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----H
Confidence 665544332 11100 13455556666666777777777788999998854332 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~-------~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
.+..++.....++|..+++.+...+.. ..||+..+.+.++...+..++.++..
T Consensus 145 ~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~ 204 (444)
T PRK09669 145 HSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMT 204 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence 888888887888887777765543332 34677777666665555544444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-11 Score=131.61 Aligned_cols=177 Identities=10% Similarity=-0.017 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cch-HHHHHHHHHHHHHH
Q 008896 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGR-YWTIAIFTTIYLAG 149 (549)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR-~~~~~i~~~l~~~g 149 (549)
-.+..+...+.+..+..+++.|+++.+|++....+.+..+..+.-++..++.|+++||. +|| |+.++++.+...++
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~ 90 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV 90 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence 33455566667767778899999999999999999999999999999999999999942 498 55666677777776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCC-CCChhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~-~~~~~~~~~r~ 228 (549)
.+++... +... .......+++..++.+++.........++.+|+.+ +++ |.
T Consensus 91 ~~llf~~---p~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~ 142 (473)
T PRK10429 91 LFLLFSA---HLFE-------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------RE 142 (473)
T ss_pred HHHHHcC---CCCC-------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HH
Confidence 6555432 1100 00234445555566778888888888899999985 444 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHHHHHh
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~-------~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+..++-....++|+.+.+.+...+.. ..||++...+.++..++..++.++
T Consensus 143 ~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~ 199 (473)
T PRK10429 143 QLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLR 199 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 88888666667776665555443322 224666655555554444444444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-12 Score=131.44 Aligned_cols=171 Identities=11% Similarity=0.090 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+..+...++....++....+++.|+++++|++..+.+.+.+...++..++.+++|+++||+ |||+.+.++.+...+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~ 297 (393)
T PRK15011 219 LLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYA 297 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 3333344444445555566788999999999999998888877777888899999999997 999988777655544433
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
.+... .+...+++.+++.+++.|...+....+..|.+|+ + |+++.
T Consensus 298 ~~~~~----------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~ 342 (393)
T PRK15011 298 GMLMA----------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSAT 342 (393)
T ss_pred HHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHH
Confidence 33222 2345556677777776666666667777888874 4 78899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
++++...++|..++|.++|++.+..||++.|++..+..++++++.+.
T Consensus 343 ~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 343 TLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99888889999999999999999999999998877777666665544
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-11 Score=130.11 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=125.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccc
Q 008896 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (549)
Q Consensus 96 l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (549)
+.+++|+...+.+.+.++|.++++++.+++|.|.||+ .-.+.+..+.++..+..++....
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~------------------- 131 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV------------------- 131 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3467888889999999999999999999999999997 86666666655555544433332
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--
Q 008896 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-- 253 (549)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~-- 253 (549)
.|.+.+++.|++.|+..++..|+...+++-++.+++ |+.-+++++.+..+|..+|.+++..+.
T Consensus 132 ---------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~ 196 (495)
T KOG2533|consen 132 ---------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKL 196 (495)
T ss_pred ---------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence 578899999999999999999999999999999999 999999999999999999999998863
Q ss_pred ----hccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 254 ----MEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 254 ----~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
...||||.|.+.+++.++..++.++..
T Consensus 197 ~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 197 NGSGGLAGWRWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred cCCCCcCCceeehhHHHHHHHHHHheEEEEe
Confidence 346899999999887776665555543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-10 Score=122.38 Aligned_cols=117 Identities=11% Similarity=0.022 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
.+....++..+.+-...++++.|+++ .|++..|.+.+.++..+...+.+++.|+++||...++|.+.+..++..+....
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 34555555555555566788899864 78999999999999999999999999999999845778887776665554444
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
.... .+.+.+++..++..+......|...++.-+...+
T Consensus 85 ~~~~----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~ 122 (400)
T PF03825_consen 85 LAFS----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD 122 (400)
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence 3332 3455566667777787777778777777666653
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-11 Score=128.19 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHH-HHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTT 144 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~~~-~i~~~ 144 (549)
+..+.-.+..+...+.+..+..+++.|+++.+|++..+++.+.....+..++..++.|+++||. +||||.+ .++.+
T Consensus 8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 3444444566667777766777888999999999999999999999999999999999999985 4777755 55555
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
...+..+++..... ... .......+++..++.+++.+...+...++..++..+.++
T Consensus 88 ~~~~~~~~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~--- 143 (448)
T PRK09848 88 PLMIFSVLVFWVPT--DWS-------------------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS--- 143 (448)
T ss_pred HHHHHHHHHHhCcC--CCC-------------------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH---
Confidence 44444333321100 000 002334445555677888888888888887777765432
Q ss_pred hhhhhHHHHHHHH-----HHHHHHHHHHHHHH
Q 008896 225 THLDRFFNFFYLS-----VTVGAIVAFTLVVY 251 (549)
Q Consensus 225 ~~r~~~~~~~~~~-----~~ig~~i~p~i~~~ 251 (549)
|.+..++-.++ .+++..++|.+.+.
T Consensus 144 --r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 144 --RARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665554433 34556666666554
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-10 Score=113.08 Aligned_cols=173 Identities=18% Similarity=0.147 Sum_probs=144.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
|..+..+.++.+--+-...++ .++..-+.+++|+|.++++++.++..+...+..+++.+|+.|+ |-.+.+..++++..
T Consensus 11 ~~li~gIvlia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHH
Confidence 445555555555556666444 4577889999999999999999999999999999999999997 99999999999888
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+|.++=... +...++.+-.+.|+|.+......++++-+-||.+.
T Consensus 89 ~G~~iR~~~-----------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~------- 132 (395)
T COG2807 89 AGILIRSLG-----------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV------- 132 (395)
T ss_pred HHHHHHhcc-----------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------
Confidence 887765442 45668888889999999999999999999999765
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHh
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~-gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+..+++|.....+|+++++.+...+.++. |||..+.+=+...++++++++.
T Consensus 133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999999998877 7999988777777777766654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=129.46 Aligned_cols=170 Identities=13% Similarity=0.059 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 008896 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~ 158 (549)
++..++++.+..+++.|+.+ .|.+ +.+...+.+.++..++.++.|+++||+ |||+.+.++..+..++.+++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-- 299 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA-- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh--
Confidence 34455565666777888754 5653 345566777888888999999999997 99999988888777777666553
Q ss_pred hcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHH
Q 008896 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (549)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~ 238 (549)
.+...+++++++.|++.++..+.......|.+|++. |++.+++++...
T Consensus 300 --------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 347 (399)
T PRK05122 300 --------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFL 347 (399)
T ss_pred --------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 345556777889999999888888888889998877 999999999999
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008896 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (549)
Q Consensus 239 ~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (549)
.+|..++|.+.+++.+..||++.|++.+++.++++++.++..++.+++
T Consensus 348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999988877777766655554444333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-11 Score=124.80 Aligned_cols=176 Identities=11% Similarity=-0.039 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+..+...+..++..+++-...++.+.++++..|++.++.+.+.+...+...+..++.|.++||+ |.||-+++...+..+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 3666677777777777666778999999999999999999999999999999999999999997 966554444333222
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHH----HHhccCcchhhhhhhcccCCCCChhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYIT----GFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
....+..-...|.+. .| +.++.++. ++......|...++..+...
T Consensus 86 l~~pff~~v~~pll~---------------------~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr------- 134 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQ---------------------SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR------- 134 (412)
T ss_dssp TCHHHHHHTHHHHHH---------------------TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHH---------------------HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHHHH-------
Confidence 111111110111111 11 22222222 23333333444333322211
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
..+-=++--.....+|.+++..++|++.+ .+-...||+..++.++..++.++
T Consensus 135 -~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 135 -RNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp -HHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -HhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHH
Confidence 11222233455667999999999998876 45667888876665555444444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-11 Score=129.85 Aligned_cols=183 Identities=12% Similarity=-0.003 Sum_probs=131.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
++++.........++..+.+|.+..+++.|+++.+|++......+.........++.+++|+++||+ |||+++.++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 3444444445566777788888889999999999999887665555556666778888999999997 999998888766
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+.+..... .. .....+++..++.+++.+...+...++.+|.+|.+.
T Consensus 326 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~----- 376 (438)
T PRK09952 326 GTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY----- 376 (438)
T ss_pred HHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-----
Confidence 5554433332210 00 123334445566678888878888999999999988
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHHhh
Q 008896 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 226 ~r~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~--gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|+++.++ +..+..+|+.++|.+.+++.+.. +|...+.+.+++.+++.+..+..
T Consensus 377 -r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 377 -RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred -hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 9999888 55556799999999999998744 48888877776666666555443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=138.36 Aligned_cols=132 Identities=9% Similarity=0.009 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHH
Q 008896 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (549)
Q Consensus 111 ~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (549)
..+..++..++.+++|+++||+ |||+++.++.++..++.+++++. .+...+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~~l 651 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG----------------------------NSESAM 651 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHHHH
Confidence 4455678889999999999997 99999999998888887777654 234456
Q ss_pred HHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 008896 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (549)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (549)
++.+++.+++.++..+...++++|++|++. |++++++.+....+|+++||++++++.+. +...+|++.+++.+
T Consensus 652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll 724 (742)
T TIGR01299 652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA 724 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence 666777888888888899999999999988 99999999999999999999999988764 45567777766666
Q ss_pred HHHHHHHh
Q 008896 271 ISNMLFFI 278 (549)
Q Consensus 271 i~~~~~~~ 278 (549)
++.++.++
T Consensus 725 l~~ll~~~ 732 (742)
T TIGR01299 725 CGGLLALK 732 (742)
T ss_pred HHHHHHHh
Confidence 65555443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=124.86 Aligned_cols=173 Identities=20% Similarity=0.232 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH-HHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLA 148 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~-~~~i~~~l~~~ 148 (549)
..+...+..++..........+.+.|+.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+.++..+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 344455556666666667778888888888899999999999999999999999999999997 9999 99999988888
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+.+... .+...+++..++.|++.+...+....+..|..|+++ |+
T Consensus 255 ~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~ 300 (352)
T cd06174 255 GLLLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RG 300 (352)
T ss_pred HHHHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HH
Confidence 88877654 345667888899999999999999999999999887 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
+.+++++...++|..++|.+.+++.+..+|++.|++.++..+++.++.+
T Consensus 301 ~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 301 TASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999999999999999988887777666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=127.95 Aligned_cols=169 Identities=15% Similarity=0.076 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
.+.+.+..++..+.........++|. +++|.+..+.+...+.+.++..++.+++|+++||+ |||+.+.++.++..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence 33444444444444444555566665 56899988889999999999999999999999997 99999999888888877
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+++..... .+...+++..++.+++.+...+..+.+.+|.+|+++ |++.
T Consensus 285 ~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~ 332 (377)
T TIGR00890 285 AAMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAAN 332 (377)
T ss_pred HHHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhH
Confidence 76654311 122334455677888888888888889999999988 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (549)
+++++....+|..++|.+.+++.+..||++.|.+.+++.++++
T Consensus 333 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 333 YGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988776665543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=129.21 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++.+.+..++...+.+++..++|.|+++.+|++..+++...+.+.++..++.+++|+++||+ |||+++.+...+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence 455555666666777778889999999999999999999999999999999999999999997 9999888777665555
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++... .+...+.+..++.|++.++..+...++..|..|.+ ++.
T Consensus 285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~ 329 (394)
T PRK03699 285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK 329 (394)
T ss_pred HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence 4444332 23344555667788888888888888888877643 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
..++......+|..++|.+.|++.+..|++..|++.++..+++.++...
T Consensus 330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 6677777888999999999999999999999998777766655544433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-11 Score=125.10 Aligned_cols=165 Identities=10% Similarity=0.040 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 008896 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (549)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~ 157 (549)
.++..........+++.|+.+++|.++.+.+.......+...++.+++|+++||+ |||+++.++.++..++.......
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~- 285 (375)
T TIGR00899 208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD- 285 (375)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH-
Confidence 3333333444556778899999999999988887777777777888999999997 99999888776555544433332
Q ss_pred hhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHH
Q 008896 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (549)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~ 237 (549)
.+.+.+++.+++.|++.+...+....+..|.+|+ + +++.+++++..
T Consensus 286 ---------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~ 331 (375)
T TIGR00899 286 ---------------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNT 331 (375)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHH
Confidence 3455566677788888888778888888898875 3 56899999999
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 238 ~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.++|..++|.+++++.+..||+..|++.++..+++.++.+.
T Consensus 332 ~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 332 GRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999888777766665443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-11 Score=130.49 Aligned_cols=180 Identities=9% Similarity=0.009 Sum_probs=131.3
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 008896 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (549)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~ 143 (549)
..++|..+.....+..+.... |++.. ....+++++|++..+.+++.++... ..++.++.|+++||+ |||+++.++.
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~-y~fsv-~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ 98 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFM-YAFNL-ISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSM 98 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 355675555545444444333 34443 4567889999999999888776443 345566789999997 9999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh
Q 008896 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
+++.+|.++++++... ... .+.+.+++.|++.|+|.+...+.....+.++|| ++
T Consensus 99 ll~~iG~ll~ala~~~--~i~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~--- 152 (591)
T PTZ00207 99 TVFCLGTLLFALTFQE--VIE--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN--- 152 (591)
T ss_pred HHHHHHHHHHHHHhcc--ccc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh---
Confidence 9999999998875221 001 367889999999999999888888888999997 56
Q ss_pred hhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 224 KTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~ig~~i-~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
||+..++......+|+++ +++..+++. .+|++.|++.++..++..++.+.
T Consensus 153 ---RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 153 ---RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999975 555555554 35777777766665554444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-09 Score=117.86 Aligned_cols=182 Identities=10% Similarity=0.046 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHHH-HHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTTIYLA 148 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~~~~-i~~~l~~~ 148 (549)
.-.+..+...+.+..+..++..|+++.+|++...++.+..+.-+.-++.-|+.|.++||. +||||-++ ++.+.+.+
T Consensus 13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i 92 (460)
T PRK11462 13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI 92 (460)
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence 334555555666666777899999999999999999999999999999999999999973 68775544 56666777
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+++... |...+ ......+++.-.+..++.........++.+|+.++.++ |.
T Consensus 93 ~~~llf~~---p~~s~-------------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt 145 (460)
T PRK11462 93 VCVLAYST---PDLSM-------------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RI 145 (460)
T ss_pred HHHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HH
Confidence 76665533 11111 12344455555567788888888888999999885443 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~-------~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
+..++...+.++|..+++.+...+... .||+....+.++..++..++.+...+
T Consensus 146 ~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~k 205 (460)
T PRK11462 146 SLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTK 205 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcce
Confidence 999998888888888887776554432 24666655555544444444444333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=129.88 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chHHHH-HHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIY 146 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~-GR~~~~-~i~~~l~ 146 (549)
+.+|...+..++.....+++..++|.|++++.|++..+++.....+.++..++.+++|+++||+. |||+.. .+...+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 35666777777777777888899999999999999888888888888888999999999999962 344332 2222333
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++.+. +. .+....+++.++.|.+..+.......+..|.+|++.
T Consensus 333 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 380 (452)
T PRK11273 333 TIATIVYWLN-------PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------ 380 (452)
T ss_pred HHHHHHHHHh-------cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------
Confidence 3333332221 00 123333444555555443333344456779999988
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i-~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++.+++.+...++|+.+ +|.+.|++.++.||++.|++..+..+++++....
T Consensus 381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888655 7999999999999999998877766665554443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.4e-11 Score=124.98 Aligned_cols=177 Identities=14% Similarity=0.062 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhh----hccchHH-HHHHHHHHHHHHHHHH
Q 008896 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYW-TIAIFTTIYLAGLTGI 153 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD----~~~GR~~-~~~i~~~l~~~g~~~~ 153 (549)
+...+.......+++.|+++.+|+++...+.+..+..+..++.-++.|.++| |+ |||| .++++.++..++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence 4555555556678899999999999999999999999999999999999999 65 8665 4556777777777766
Q ss_pred HHh-hhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 154 TLC-ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 154 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
... .. ... .......+++..++..++......+..++++|+.++.++ |.+..+
T Consensus 90 f~~~p~--~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~ 143 (428)
T PF13347_consen 90 FSPPPA--GLS-------------------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSS 143 (428)
T ss_pred hccccc--hhh-------------------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHH
Confidence 643 10 000 002334456666677899999999999999999986542 888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~-------~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
+-.....+|..+...+.+.+.+. .+|++..++.++..++..++.++..|+
T Consensus 144 ~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 144 WRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 87777777776565555554422 168888887777766666666555444
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-11 Score=125.61 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 008896 79 MAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~ 155 (549)
++..+....+...++.|+.+..+.... ..+.+...+.++..++.++.|+++||+ |||+++.++..+..++.+++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 333444444556677887765443322 234455566677788888999999997 9999999888877766665544
Q ss_pred hhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHH
Q 008896 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (549)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~ 235 (549)
. .+.+.+++.+++.|++.+...+.....+.+..|++. |++.+++++
T Consensus 308 ~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~ 353 (408)
T PRK09874 308 V----------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQ 353 (408)
T ss_pred h----------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHH
Confidence 3 245567778889999999999999999889888887 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 236 ~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
....+|..+||.++|++.+..||++.|++.+++.+++.++.+.
T Consensus 354 ~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 354 SFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877776665544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-11 Score=129.47 Aligned_cols=150 Identities=16% Similarity=0.119 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 008896 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (549)
Q Consensus 87 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~ 166 (549)
.+..++|.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.++......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4567889999889999999999999999999999999999999997 9999988877665555443322100
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008896 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p 246 (549)
.+.+.+.+..++.++...+..+..+.++.|.+|++. |++.+++++....+|..+||
T Consensus 364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp 419 (496)
T PRK03893 364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAP 419 (496)
T ss_pred ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHH
Confidence 233334444444444444455677788899999888 99999999999999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHH
Q 008896 247 TLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 247 ~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
.++|++.+..||+..+.+.++..
T Consensus 420 ~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 420 ILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHhccCChHHHHHHHHHHH
Confidence 99999999999998876555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-11 Score=122.20 Aligned_cols=180 Identities=12% Similarity=0.000 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH-HHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL 147 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~-~~i~~~l~~ 147 (549)
+..+...+..++.....+.+..+++.|+.+.+|.+..+.+.+.....++..++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 3566677777888888888888999999999999999999999999999999999999999997 98861 111111111
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+...+........ .+.. ..+..++.+.+..+..+...++.+|.+|+++ |
T Consensus 294 ~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 345 (399)
T TIGR00893 294 IAGLVLSLLMFATNYV---------------------NIPY-AALALVALGFFGLGAGAIGWALISDNAPGNI------A 345 (399)
T ss_pred HHHHHHHHHHHHhccc---------------------hhHH-HHHHHHHHHHhchhhhhHHHHHHHhhcChhH------H
Confidence 2211111110000000 1222 2333333344444478899999999999988 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~ 277 (549)
++.+++++...++|..++|.+.+++.+..| |++.|++.++..+++.++.+
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 99999887777666655543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.7e-11 Score=123.96 Aligned_cols=169 Identities=10% Similarity=-0.001 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
.+....++.....+.+..+++.|+.+ .|++..+.+.....+.++..++.++.|+++||+ |||+.+.++.+...++.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~ 301 (406)
T PRK11551 224 LLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAA 301 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 33344445555666677788888864 799999999999999999999999999999997 9999988866655555544
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
+... .+...+.+..++.|++.++..+...++..|.+|+++ |++.++
T Consensus 302 ~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g 347 (406)
T PRK11551 302 LAAA----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVG 347 (406)
T ss_pred HHhc----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhh
Confidence 4332 234445566677888887888888999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHH
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~ 277 (549)
+++....+|..++|.++|++.++.+ |...+++...+.+++.++.+
T Consensus 348 ~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 348 AAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654 55566555555544444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-11 Score=126.24 Aligned_cols=178 Identities=16% Similarity=0.109 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc--hHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYL 147 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~G--R~~~~~i~~~l~~ 147 (549)
.++.+.+..++..+.++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ |++...+..+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 45555566666666777788899999988999999999999999999999999999999999732 2332222221112
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+..+.+... +. .+.....+..++.|++..+.........+|.+|++. |
T Consensus 324 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 371 (434)
T PRK11663 324 LSVGSLWLM-------PF-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A 371 (434)
T ss_pred HHHHHHHHc-------cc-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence 222111111 00 122223333344454443333344556789998877 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
++..++.+...++|..++|.+.+++.+..||+..|++.+++.+++.+..+..
T Consensus 372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 423 (434)
T PRK11663 372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPF 423 (434)
T ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877766665554443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.5e-12 Score=109.55 Aligned_cols=131 Identities=20% Similarity=0.232 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHH
Q 008896 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (549)
Q Consensus 113 ~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (549)
.+.++..++.++.|+++||+ |||+.+.++..+..++.+.+... .+...+.+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 56 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLII 56 (141)
T ss_pred eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHHH
Confidence 45567788899999999997 99999999988888887776654 35667788
Q ss_pred HHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 008896 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (549)
.+++.|++.+...+....+..|.+|+++ |++..++.+....+|..++|.+.+++.+..+|++.|++..+...+.
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988 9999999999999999999999999999899999998877766655
Q ss_pred HHHHHh
Q 008896 273 NMLFFI 278 (549)
Q Consensus 273 ~~~~~~ 278 (549)
.+....
T Consensus 131 ~~~~~~ 136 (141)
T TIGR00880 131 FILLAF 136 (141)
T ss_pred HHHHhh
Confidence 555444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-10 Score=121.08 Aligned_cols=178 Identities=15% Similarity=0.041 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.+.+..++..++++++..+++.|+.+ +|++..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..++
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVG 283 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence 34555555666677888888999999975 899999999999999999999999999999996 9999998888777776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC-CChhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~ 228 (549)
..++... + .+...+ ..++.|++.++..+.......|.+++ ++ |+
T Consensus 284 ~~~~~~~-------~--------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g 328 (393)
T PRK09705 284 FCGFIWL-------P--------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AG 328 (393)
T ss_pred HHHHHHc-------c--------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HH
Confidence 6554432 0 111112 22456788888878777777788764 44 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHhhccccc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYR 284 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~~~~~~~ 284 (549)
+.+++.+...+++..++|.+.|++.+..| |...|++.+++.++..+..+...++.+
T Consensus 329 ~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 329 KLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999886 788888877776666665555544433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-11 Score=125.20 Aligned_cols=169 Identities=14% Similarity=0.058 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+..+......++.....+.+..+++.|+++++|.+..+.+.......++..++.+++|+++||+ |||+.+.++..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence 3466666677777778888888899999889999999999888889999999999999999997 999987765554443
Q ss_pred HH-HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 149 GL-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 149 g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
.. ........ . .+...+++..++.+++.+...+...+.++|.+|++. |
T Consensus 298 ~~~~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~ 346 (394)
T TIGR00883 298 LAVPLLMALLD------S-------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------R 346 (394)
T ss_pred HHHHHHHHHhc------C-------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------e
Confidence 32 22111100 0 234556667778888888888999999999999988 8
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHH
Q 008896 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 269 (549)
Q Consensus 228 ~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~ 269 (549)
++++++ +..+..+|..++|.+++++.++.| |++.++..+++.
T Consensus 347 ~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 347 YTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 888887 556677899999999999999888 887766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-11 Score=124.79 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s--------~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
..++..++..........+.+.|+.+ .|.+ ....+...++..+...++.++.|+++||+ |||+++.++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~ 289 (418)
T TIGR00889 212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLV 289 (418)
T ss_pred eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 34444444444444455666778754 4543 35567888888888899999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++..++..... ...+...+++..++.|++.+...+....+++|.+|++.
T Consensus 290 ~~~v~~~l~~~~~~------------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~---- 341 (418)
T TIGR00889 290 AWALRFGFFAYGDP------------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI---- 341 (418)
T ss_pred HHHHHHHHHHHcCc------------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----
Confidence 88887766654210 00134556778889999998888888999999999988
Q ss_pred hhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 225 THLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 225 ~~r~~~~~~~~-~~~~ig~~i~p~i~~~l~~~------~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
|++.+++++ ....+|..+||+++|++.++ .||++.|.+.+++.++..+++++..+
T Consensus 342 --~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 342 --RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999987 56789999999999999887 46999998887776666555554443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-10 Score=119.84 Aligned_cols=172 Identities=15% Similarity=-0.040 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+...+..++.....++...++++|+.+.+|.+..+++.+.+.+.++..++.++.|+++||+ |||+. .++..+..++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~~ 285 (390)
T PRK03545 208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCLL 285 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHHH
Confidence 3344444555555566667788899888999999999999999999999999999999997 98765 444444434333
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
.+.... .+...+++..++.|++.+...+.....+.+..| +. |++++
T Consensus 286 ~l~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~ 331 (390)
T PRK03545 286 LLLPAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAM 331 (390)
T ss_pred HHHHHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHH
Confidence 322110 245566677778888887777777777777766 45 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
++++....+|..+||.++|++.++.|++..|++.+++..+++++....
T Consensus 332 g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 332 ALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 999888999999999999999999999999998888777766665543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-08 Score=109.75 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=52.1
Q ss_pred HHHHHhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHH
Q 008896 439 LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAF 518 (549)
Q Consensus 439 ~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~~~ 518 (549)
=++..++.|++..+...|++.++.-...++||++++.+.+.|| +..+-++.+.++.+++++++
T Consensus 402 Rs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-----------------~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 402 RSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-----------------SQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------CchhHHHHHHHHHHHHHHHH
Confidence 3455688999999999999999999999999999999999886 12355666777777776665
Q ss_pred H
Q 008896 519 L 519 (549)
Q Consensus 519 ~ 519 (549)
+
T Consensus 465 ~ 465 (477)
T PF11700_consen 465 F 465 (477)
T ss_pred h
Confidence 3
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.4e-11 Score=123.71 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=127.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
++|..........++..+....+..+++.|+.+++|++..+.+.+.....++..++.++.|+++||+ |||+.+.++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~ 313 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLA 313 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHH
Confidence 3444444444444444555556677889999999999999999999999999999999999999997 999998887765
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..+..+..... . .+...+.++.++.+++.++..+..++++.|.+|++.
T Consensus 314 ~~~~~~~~~~~-~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 361 (405)
T TIGR00891 314 GQLLIIPVFAI-G--------------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ----- 361 (405)
T ss_pred HHHHHHHHHHh-C--------------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence 53322222111 0 234455566677777777777888899999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHH
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 264 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i 264 (549)
|++.+++.+...++|..++|.+.|++.++.| |+..|..
T Consensus 362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999999999999988 8776654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-11 Score=128.33 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 008896 87 GLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (549)
Q Consensus 87 ~~~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~ 163 (549)
.....++.|+.+.+ +.+..+.+.+.++..++..++.+++|+++||+ |||+.+.++.++..++.+++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~------- 312 (420)
T PRK09528 241 VFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA------- 312 (420)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc-------
Confidence 34445677776543 55666778888888888889999999999997 99999999888888877776654
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH-HHHHHHHHH
Q 008896 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGA 242 (549)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~-~~~~~~ig~ 242 (549)
.+.+.+++.+++.+++.+...+....++.|.+|++. |++..+. ++....+|.
T Consensus 313 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~ 365 (420)
T PRK09528 313 ---------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGA 365 (420)
T ss_pred ---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHH
Confidence 355667778888888888877788889999999877 7777655 677788999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 243 ~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.++|.++|++.+..||+..|.+.++..++..++.+.
T Consensus 366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877766555544443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=123.32 Aligned_cols=162 Identities=12% Similarity=-0.027 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 008896 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (549)
Q Consensus 86 ~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~ 165 (549)
+++..+++.|+++.+|.+..+.+++.+.+.++..++.++.++++||. ++++++.++.++..++.+++.+.
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------- 309 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------- 309 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc---------
Confidence 45667788999888999999999999999999999999999999985 77888888887777776665543
Q ss_pred CCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 008896 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (549)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~ 245 (549)
.+.....++.++.|++.+...+...+++.|.+|++. |++.+++++....+|..+|
T Consensus 310 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g 364 (417)
T PRK10489 310 -------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIG 364 (417)
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHH
Confidence 345556677778888888777788889999999888 9999999999999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 246 p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
|.+.|++.+..|++..+++.++...+..++.....++
T Consensus 365 ~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 365 AALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999998888877666555544444443333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=123.07 Aligned_cols=161 Identities=15% Similarity=0.065 Sum_probs=112.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+|+.........++....++.+..++|.|+++.+|++..++++....+.++..++.+++|+++||+ |||+++.++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~ 314 (434)
T PRK15075 236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLA 314 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 343333334444556667778888999999988999998888888888888899999999999997 9999887765443
Q ss_pred HHHHH-HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 147 LAGLT-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 147 ~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.+... ....... . .+...+.+..++.+++.+...+....+..|.+|++.
T Consensus 315 ~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~----- 364 (434)
T PRK15075 315 ILTAYPALSWLVA------A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV----- 364 (434)
T ss_pred HHHHHHHHHHHHc------C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence 32211 1111100 0 122233344445566666666667788899999998
Q ss_pred hhhhHHHHH-HHHHHHHHHHHHHHHHHHhhccchH
Q 008896 226 HLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWG 259 (549)
Q Consensus 226 ~r~~~~~~~-~~~~~ig~~i~p~i~~~l~~~~gw~ 259 (549)
|++++++. .++..+++.++|.+.+++.+..|+.
T Consensus 365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 99999984 4455566888999999999988854
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=121.35 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 008896 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (549)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~ 159 (549)
+..+.+..+..+.+.|+.+ .|++. .+.....+.++..++.++.|++.||+ |||+.+.++..+..++.+++.+.
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--- 299 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA--- 299 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc---
Confidence 3344555566677778754 56553 45556667778888999999999997 99999999888888877665543
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHH
Q 008896 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (549)
.+...++++.++.|++.+...+.......|.+|+++ |++.+++++....
T Consensus 300 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (392)
T PRK12382 300 -------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD 348 (392)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 244556677888899988888888888899999888 9999999999999
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 240 ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+|..++|.+.+++.++.||++.|.+.+++.+++.++.+.
T Consensus 349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888877776665544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-10 Score=117.73 Aligned_cols=169 Identities=9% Similarity=-0.076 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+..+...+..++...+.+...++.++|+++ +|.+..+.+.......++..++.++.+++.||+ |+|+++.++.++..+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 355666667777777787888899999964 899999999988888889999999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
..++++.+ .+.+.+++..++.|+..+...+....++.+. |+++ |+
T Consensus 283 ~~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~ 327 (382)
T TIGR00902 283 RWAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IA 327 (382)
T ss_pred HHHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HH
Confidence 88877664 5677788889999999999999999999987 8777 88
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 008896 229 RFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 229 ~~~~~~~-~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~ 275 (549)
++.++++ ....+|..++|.++|++.++.|+ ..|++.++..++++++
T Consensus 328 ~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 328 KLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 8899876 46789999999999999999986 5676666665555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-10 Score=118.64 Aligned_cols=176 Identities=14% Similarity=0.056 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH-HHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA 148 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~-i~~~l~~~ 148 (549)
..+...+..++....+++..+++|.|++ ++|++..+.+.+...+.++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence 4455556677777888888889998885 5899999998888888999999999999999997 9888664 22222333
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+.+..... ... .+....++..++.|++.+...+ ......|..| ++ |+
T Consensus 301 ~~~~l~~~~~---~~~--------------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g 349 (402)
T TIGR00897 301 FTLALYYIPQ---HFG--------------------HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KG 349 (402)
T ss_pred HHHHHHHHHH---ccC--------------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hH
Confidence 2222222100 000 2344556667777877776544 3455666544 46 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
+.+++++....+|..++|.+++++.+..||+..|++.+++.+++.++..+
T Consensus 350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777666655444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-10 Score=117.83 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008896 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 83 ~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~ 162 (549)
+.+.....+++.|+++ .|.+..+.+...+...++..++.++.|+++||+ |||+++.++..+..++.+... .
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------ 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------ 284 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence 3444455677888864 699998999888888899999999999999997 999999888877777654432 1
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 008896 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 242 (549)
.......+++.|++.+...|...+...|..|+++ ++...+.++...++|.
T Consensus 285 ------------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 ------------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred ------------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 0123345666777777778888888899988766 7777778888889999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 008896 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 243 ~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~ 275 (549)
.+||.++|++.++.||++.|.+.+.+.++..+.
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877766555433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=121.82 Aligned_cols=189 Identities=13% Similarity=0.001 Sum_probs=127.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
++..+..++..+......+.+..+ .+++.+++|++..+++.......++..++.+++|+++||+ |||+.+.++.++..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~ 360 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYY-SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMA 360 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 333334444444433333333344 4555567899988888888888889999999999999997 99999999988877
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++.+...... +. .....+...+....++.+....+..+....+.+|.+|++. |
T Consensus 361 ~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~ 417 (481)
T TIGR00879 361 ICLFVLGILGASFV--TG---------------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------R 417 (481)
T ss_pred HHHHHHHHHhhccc--CC---------------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------H
Confidence 77766653211000 00 0000122222222333333333344666777899999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
++..++.+...++|+.++|.+.+++.++.||++.|++.+++.+++.++.++..+
T Consensus 418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 418 PKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 999999999999999999999999999899999998887776666665544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.24 E-value=7e-10 Score=119.19 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=148.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH--HHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTTI 145 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~--~~~~i~~~l 145 (549)
.|.+...++..++.+-+...+......|.++++|++..+...+..+..+..++|.+++|++.||+ |-| ++++++.++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 35666777777888888888999999999999999999988888888999999999999999997 988 888888776
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+.+..+.-.+. ..+..... .+.+.+++.-++.|++.|+.++..-++.+++.|+++
T Consensus 359 ~~~i~~~g~~G-~~~~~~g~-------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~----- 413 (477)
T PF11700_consen 359 WIIIPLYGLFG-FWPSFFGL-------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR----- 413 (477)
T ss_pred HHHHHHHHHHH-hhhcccCc-------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch-----
Confidence 64322221110 00000000 345667777789999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (549)
.+.+|++|.+..-..+.+||++.+.+.+.+| -|+++....++.++++++++.
T Consensus 414 -e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 414 -EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999887 888988777777777766544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-10 Score=120.08 Aligned_cols=172 Identities=10% Similarity=0.070 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 008896 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~-~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~ 156 (549)
.++..+..+....+.++|+.+++|++..+.+.... ...++..++.+++|+++||+ |||+.+.++.++..++.+.+.+.
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556667888988889999999998874 55678999999999999997 99998877766555544333221
Q ss_pred hhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHH
Q 008896 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (549)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~ 236 (549)
... + .+...+.+..++..++.|...+...++..+..+++. +++.+++.+.
T Consensus 310 ~~~----~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s 359 (491)
T PRK11010 310 SIT----D--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSA 359 (491)
T ss_pred Hhc----c--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHH
Confidence 110 0 123334444555444455555666788888888888 7888999998
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 237 ~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
..++|..+++.++|++.+..||+..|.+.+++.++++++....+
T Consensus 360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999888888777776665543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-10 Score=118.47 Aligned_cols=170 Identities=11% Similarity=0.027 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 008896 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~ 156 (549)
..++....+|++..++|.|+.+.+|++..+.+...++..++..++.++.|+++||+ |||+++.++.++..+..+.....
T Consensus 251 ~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~ 329 (432)
T PRK10406 251 FTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSA 329 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHH
Confidence 33444677888899999999999999988888877777777778888899999997 99998877665443333222111
Q ss_pred hhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHH
Q 008896 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (549)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~ 236 (549)
.. .. .+....+....+..++.+...+....+.+|.+|++. |++++++.+.
T Consensus 330 ~~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~ 379 (432)
T PRK10406 330 LQ-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYA 379 (432)
T ss_pred HH-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHH
Confidence 00 00 111111222222223333334556778899999999 9999999665
Q ss_pred H-HHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 008896 237 S-VTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 237 ~-~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (549)
. ..+++..+|.+.+++. ..| |...+++.++..+++.+..++
T Consensus 380 ~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 380 VANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4 4454556888888664 445 555555555555555444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-09 Score=111.83 Aligned_cols=179 Identities=15% Similarity=0.075 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+.++...+..++...+.|..++++-+++++..|++....++++..|.++..++.+++|+++|| +.++++.....+..+
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 367888888999999999999999999999999999999999999999999999999999997 888888888777777
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
..+.+.+.. .+....++..++.|+..+........-.++ ..++. +.
T Consensus 289 ~~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~ 334 (394)
T COG2814 289 ALLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------AD 334 (394)
T ss_pred HHHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hH
Confidence 777666542 244555666666777777666666666666 33444 78
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (549)
.+.+++....|+|..+|..++|.+.++.|+....++.++..+++.++.+...+..
T Consensus 335 ~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 335 LAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999998888888776654443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-10 Score=121.05 Aligned_cols=178 Identities=15% Similarity=0.083 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH-
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA- 148 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~- 148 (549)
.++.+.+..++.....+++..++|.|+++..|++..++++....+.++..++.+++|+++||+ |+++....+..+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 455666666666777788889999999998999999999988889999999999999999997 644322233222222
Q ss_pred --HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 149 --GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 149 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
+.+.+... +. .+.....+..++.|++..+..........|.+|++.
T Consensus 331 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 378 (438)
T TIGR00712 331 TIAVIVYWMN-------PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 378 (438)
T ss_pred HHHHHHHHhc-------CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------
Confidence 11111111 00 122233344455555444433333456779999888
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 227 LDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~-~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
|+++.++++...++|+ .++|.+.|++.++.||.++|++.++..+++.+..++..
T Consensus 379 ~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 379 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 433 (438)
T ss_pred eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877774 68999999999999999999887776666655555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=122.15 Aligned_cols=171 Identities=7% Similarity=-0.019 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc-cchHHHHHHHHHHH--
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFTTIY-- 146 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~-~GR~~~~~i~~~l~-- 146 (549)
.++...+..++..++++....+++.|+. ++|++..+++.+.++..++..++.+++|+++||. +++++...+...+.
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 4556666667777777778888899986 4799999999999999999999999999999974 24444444333222
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++... .+.+.+++.+++.|++.++..++..+.+.|.+|+++
T Consensus 321 ~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------ 366 (455)
T TIGR00892 321 GLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------ 366 (455)
T ss_pred HHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------
Confidence 2333333222 356667788889999999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHH
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNML 275 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~-gw~~~f~i~~~~~~i~~~~ 275 (549)
+++.+++++...++|..+||.++|++.+.. +|++.|++.++..+++.+.
T Consensus 367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 999999999999999999999999998877 4999999887766655543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.5e-10 Score=115.96 Aligned_cols=191 Identities=13% Similarity=0.037 Sum_probs=142.9
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-HHH
Q 008896 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWT 138 (549)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR-~~~ 138 (549)
....+.+||.+++..+..++..+.++.+.+..-+|+++ +.+-+.+..|++++...++..++.+..|+.+-|. |. |+-
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P 104 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP 104 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence 34556789999999999999999888777777789865 4667778889999999999999999999999987 74 666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC
Q 008896 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 139 ~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
++.+.++.++|.++....... |+ .....++++|++.|+|.|.. +..=++++|-...
T Consensus 105 li~s~ii~~~g~llY~~l~~~----~~-------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~ 160 (488)
T KOG2325|consen 105 LIVSFLIAIIGNLLYLALAYV----PN-------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTV 160 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cc-------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc
Confidence 788888999999888433221 11 25788999999999997764 6667888998777
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh----c---------cchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----E---------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~----~---------~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
++ |.++++....+..+|..+||.+...+.. . .-+..+-|+.++..++.+++..+..++
T Consensus 161 ~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 161 ED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred cc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 77 8888888777666676667666544421 1 114456667777666666655554444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.3e-10 Score=119.87 Aligned_cols=175 Identities=11% Similarity=0.038 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH-----HHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTI 145 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~-----~~~i~~~l 145 (549)
.|.+.+..++.....+.+..+++.|+.+++|++..+++...+++.++..++.+++|+++||+ |||+ ........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 34444444444555556677889999989999999999999999999999999999999997 8752 22211111
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.+.+...+.+... .+.....+..++.+++.++..+...++..+..| +.
T Consensus 333 ~l~~i~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~----- 380 (476)
T PLN00028 333 TLGGVFCIWLGRA--------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS----- 380 (476)
T ss_pred HHHHHHHHHhccc--------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh-----
Confidence 1111111111100 233334444555566555555555566666544 44
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
|+...++.+.+.++|+.++|.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 381 -~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 -LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred -chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 888888887777777777776543 22334699999988877777766665544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=110.96 Aligned_cols=164 Identities=10% Similarity=-0.001 Sum_probs=125.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
.+..+...+..|+...+--++..+++.|+.+. +|+++.+++...+.+.++..++.+++++++||+ |++|++.++..+
T Consensus 139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l 217 (310)
T TIGR01272 139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFL 217 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence 34555555555555555667788999999854 799999999999999999999999999999997 999998888877
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.+++.++.... .+. ....+.++.|++.+..+|...+...+.+|++.
T Consensus 218 ~~~~~~l~~~~----------------------------~~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~----- 263 (310)
T TIGR01272 218 AVLLSIGAALT----------------------------HGY-VAMWFVLALGLFNSIMFPTIFSLALNALGRHT----- 263 (310)
T ss_pred HHHHHHHHHHc----------------------------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----
Confidence 77766544432 111 12335557899999999999999999888643
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
+.+.++. ....+|+.+.|.+.|++.+..|.+++|+++.++.
T Consensus 264 --~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 264 --SQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred --hhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 2333343 4566899999999999999999999888655543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-10 Score=117.14 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH--HHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT--TIYL 147 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~--~l~~ 147 (549)
.++.+.+..++.....+++..+++.|+.+.+|.+..+++...+.+.++..++.++.|+++||..+||+...... .+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45666666777777777788889999999999999999999999999999999999999998634444332211 1112
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++....... +. .+.....+..++.|+...+..+....+..|.+|++. |
T Consensus 297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 344 (379)
T TIGR00881 297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A 344 (379)
T ss_pred HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence 222221111 00 234445556666777666666777788899999988 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f 262 (549)
++..++++....+|..++|.+.|++.+..||++.|
T Consensus 345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999999998764
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-09 Score=112.77 Aligned_cols=149 Identities=15% Similarity=0.040 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 008896 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (549)
Q Consensus 84 ~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~ 163 (549)
..+.+..+++.|+.+ .|.+..+.+...+...++..++.+++|+++||+ |||+++.++.++..++.+++.....
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ----- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 344466778888875 699988888888888899999999999999997 9999998888776665544432200
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 008896 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (549)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 243 (549)
.+...+.+..+..+++..+..+..+.++.|.+|++. |++++++.+....+|+.
T Consensus 319 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~ 371 (426)
T PRK12307 319 ---------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT 371 (426)
T ss_pred ---------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence 112222222223333334445667788899999888 99999999888899999
Q ss_pred HHHHHHHHHhhccchHHHHHHHH
Q 008896 244 VAFTLVVYIQMEHGWGSAFGALA 266 (549)
Q Consensus 244 i~p~i~~~l~~~~gw~~~f~i~~ 266 (549)
++|.+.+++.+..|+....++..
T Consensus 372 ~gp~~~g~l~~~~g~~~~~~~~~ 394 (426)
T PRK12307 372 FNSMAATWLGITMGLGAALTFIV 394 (426)
T ss_pred HHHHHHHHHHHcccHHHHHHHHH
Confidence 99999999999888765544433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=115.90 Aligned_cols=164 Identities=9% Similarity=-0.081 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH-HHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL 147 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~-~~i~~~l~~ 147 (549)
..+...+..++....++++.+++|.|+++ ..|.+..+++.......++..++.+++|+++||+ |||+. +.+..++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence 56667777788888888999999999976 2467888888888999999999999999999997 86664 333333333
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.++. .. . .+....+.+..+.++|.....+.......|.+|++. |
T Consensus 322 ~~~~~~-~~-~--------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~ 367 (412)
T TIGR02332 322 AGWLLA-SA-T--------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------R 367 (412)
T ss_pred HHHHHH-Hh-c--------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------H
Confidence 332211 11 0 011111222223333333333444455567788877 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA 268 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~ 268 (549)
++++++.+...++|..++|.+.+.+.+..| |+++|++.++.
T Consensus 368 ~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 368 AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999999999999875 99998876554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.9e-09 Score=109.20 Aligned_cols=171 Identities=11% Similarity=-0.107 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
++...+..++.....+......+.|+.+++|++..+.+.......++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 34444444444444555556678888888999998888877777778889999999999997 99999999888887777
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+++.+.... .+ .+...++++.++.|+|.+...+.......+. ++++ |++.
T Consensus 296 ~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~ 345 (406)
T PRK15402 296 LLAALATVI---SS--------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTV 345 (406)
T ss_pred HHHHHHHHc---cc--------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHH
Confidence 776654210 00 2455567778888888887766665554433 3355 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (549)
.+.+++...+|..+|+.+.+++.+..++....+..++..++.
T Consensus 346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999988888766555544444443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=109.61 Aligned_cols=181 Identities=13% Similarity=-0.015 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
+..|.+++..+...-++-++..+++.|++++++.++.+++.....+.+...+..++||+||||+ |.+|+..+....+++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL 296 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence 4678888888888888888999999999999999999999999999999999999999999998 988888888888877
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+..+..+...... | ..+...+++..+.+++..|.-...+...+...|+.+ -+
T Consensus 297 ~~~~l~~~~~~~~-----------~----------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G 348 (417)
T COG2223 297 AAALLSLFLTGFG-----------H----------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TG 348 (417)
T ss_pred HHHHHHccccccc-----------c----------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hh
Confidence 7777665421000 0 023333444444444445554555566666666653 57
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (549)
...++.....++|+..-|...+...+.+| +...|++...+.+++.++.+.
T Consensus 349 ~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 349 AVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888889999999999999999888 889999888777777665544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=103.77 Aligned_cols=170 Identities=18% Similarity=0.113 Sum_probs=134.2
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Q 008896 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~ 140 (549)
..........+|.+..+.++..++.+-..+-.+.+.++.+|+|...++.+.+...+..++..++.|.++|++ ||+-...
T Consensus 256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv 334 (459)
T KOG4686|consen 256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWV 334 (459)
T ss_pred cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhH
Confidence 333334445788888888888888888888889999999999999999999999999999999999999997 9997766
Q ss_pred HHHHH-HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 141 IFTTI-YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 141 i~~~l-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
.+..+ .+++-.+++++ ...-+++..++|+..........+.++-..|++
T Consensus 335 ~~a~~~tl~~H~~l~Ft------------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~ 384 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFT------------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEE 384 (459)
T ss_pred HHHHHHHHHHhhhHHhh------------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence 65544 44455555553 222466777888888777666788888888988
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHH
Q 008896 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAI 267 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g---w~~~f~i~~~ 267 (549)
+ .|++++..+...|+|-++.|++++++.+.-| |--.|.+...
T Consensus 385 q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 385 Q------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred H------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 8 9999999999999999999999999988765 4334544433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-08 Score=102.76 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHH-HHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTI 145 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~-~~~i~~~l 145 (549)
.-+.-.+..+...+.+-.+..++..|.++.+|++...++.+..+.-+.-++.-|+.|.++||. +||+| -++.+.+.
T Consensus 13 eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip 92 (467)
T COG2211 13 EKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIP 92 (467)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHH
Confidence 334445556666677767788999999999999999999999999999999999999999985 68665 55566677
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+.+..+++..+.. . + ...+....++.-++.+++...+.-...++.+++.++.++
T Consensus 93 ~~i~~~l~F~~p~---~------~-------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E---- 146 (467)
T COG2211 93 FAIVAVLLFITPD---F------S-------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE---- 146 (467)
T ss_pred HHHHHHHHHcCCC---c------c-------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH----
Confidence 7777777776521 0 0 013445556667788999999999999999999886553
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-------~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
|.+..++.....++|..+...+.+.+.. ..||+..-++.+++..+..+++++.
T Consensus 147 -R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~ 206 (467)
T COG2211 147 -RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFN 206 (467)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888887776666655543 3456666555555555555555443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-09 Score=109.67 Aligned_cols=153 Identities=9% Similarity=0.005 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+...+..++....++... ...+.|+++.+|.+..+.+.......++..++.++.++++||+ ||++.+.++..+..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 4445555555555665555 5667777777999999999999999999999999999999997 9999988877666666
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..+..... .+.+.+++..++.|++.+...+...+++.|.+|+++ |++
T Consensus 291 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 337 (365)
T TIGR00900 291 ILVVGLTP---------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR 337 (365)
T ss_pred HHHHHhhc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence 55554430 125667778889999999999999999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g 257 (549)
.+++++...++|..++|.++|++.+..|
T Consensus 338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 338 VFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999988654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.1e-09 Score=107.94 Aligned_cols=170 Identities=11% Similarity=-0.001 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+......++.....+....++++|+.+.+|.++.+.+...+...++..++.++.|+++||+ ||++.+.++..+..++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~ 280 (382)
T PRK10091 202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALL 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHH
Confidence 3344444444444445556678888888999999999999999999999999999999997 999999888887777765
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhh-cccCCCCChhhhhhhhhH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG-ADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~-ad~~~~~~~~~~~~r~~~ 230 (549)
++.... .+.....+..++.+++..+..+...... .+..+.+. ++..
T Consensus 281 ~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~ 327 (382)
T PRK10091 281 MLFFFG---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA 327 (382)
T ss_pred HHHHHH---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH
Confidence 544321 1223344444555555544444333333 33333333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHH
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~-~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
..+....+|..+||.++|++.+. .+|++.+.+.++...+.+....
T Consensus 328 --~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 328 --GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 33556789999999999999885 6899999887766555544443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=107.15 Aligned_cols=165 Identities=7% Similarity=-0.095 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++...+..++....+......++.|+. +.|.+..+.+...+...++..+..++.|++.||+ |+++.+.++.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 4555555556556666666777888985 5899998889888888888888889999999997 9999999888888877
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++... .+.+.+++..++.|++.+...+....+..+. ++++ +++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~ 328 (382)
T PRK11128 284 WGLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIR 328 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHH
Confidence 7666543 4567778888889999888888888877775 4444 677
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 008896 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 230 ~~~~~~-~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (549)
..+++. ....+|..+||.++|++.+..|+. .|++.++..+++
T Consensus 329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 777765 556788899999999999998873 555544444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.4e-09 Score=110.85 Aligned_cols=157 Identities=10% Similarity=-0.025 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+...++..++..+++.......+.|++..+|.+..++++......++..++.++.|+++||+ |||+++.++..+..++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV 340 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 344555566666666655555667777778999999999888888888888888999999997 9999999888877777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++.+... . .+...+.+..++.|++.+...+....+..+.+|++. ++.
T Consensus 341 ~~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 389 (471)
T PRK10504 341 SLLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASS 389 (471)
T ss_pred HHHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccc
Confidence 665554210 0 223334455667788888888888899999999887 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
.++++++...+|..+|+.+++.+.+..|+
T Consensus 390 ~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 390 GNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999988776655
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-08 Score=110.40 Aligned_cols=179 Identities=17% Similarity=0.079 Sum_probs=123.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH-------
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI------- 139 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~------- 139 (549)
+++.++.+.+..++....++.+..++|.|+.+.+|++..+++...++..++..++.+++|+++||+ ++|+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~ 337 (465)
T TIGR00894 259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARK 337 (465)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHH
Confidence 455788888888999999999999999999999999999999999999999999999999999986 543211
Q ss_pred -HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC
Q 008896 140 -AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 140 -~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
..+......+..++..... . .+....++...+.+.+.++..+.......|..|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 392 (465)
T TIGR00894 338 IFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR 392 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh
Confidence 1111111111111111100 0 1223333444444555555555555555566654
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHHHHh
Q 008896 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~---gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
. ++...++.+...++|+.++|.+.+++.+.. +|..+|.+.++..+++.++..+
T Consensus 393 -~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 -F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred -H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 4 899999999999999999999999987643 4888888877776666655443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.3e-09 Score=109.12 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
...+..++....+.....+.+.|+.+.+ +.+....+...++..+...++.++.|++.||+ |||+.+.++.++..++
T Consensus 219 ~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~ 297 (396)
T TIGR00882 219 MFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVR 297 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHH
Confidence 3333444444444444456778887765 44555667777777788888889999999997 9999999988888887
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..+.... .+...+++..++.|++..........+..+.++++. +++
T Consensus 298 ~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at 343 (396)
T TIGR00882 298 IIGSSFA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SAT 343 (396)
T ss_pred HHHHHhc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEE
Confidence 7665543 355666777888888876665566667777777776 777
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 230 FFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 230 ~~~~-~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
..+. ++....+|..+++.++|++.+..||+.+|.+.+++.++..++.
T Consensus 344 ~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 344 IYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred eehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 6666 6778899999999999999999999999998877766655543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=106.77 Aligned_cols=174 Identities=7% Similarity=-0.093 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+..+...++...+......+.++|+.+ .|++..+.+.+..... ....++.+++|+++||+ |+|+++.++..+..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 3444445556666666666777888865 7999999998887765 46667788999999997 9999988877665333
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC-CChhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~ 228 (549)
.+....... .... .+...++....+.+++.+...+...+...+..++ +. ++
T Consensus 288 ~~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g 339 (390)
T TIGR02718 288 ALLWFAQAA-FWLA---------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AG 339 (390)
T ss_pred HHHHHHHHH-cccC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hH
Confidence 222221110 0000 1222333444445566666667777777677665 55 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~ 274 (549)
+.+++++...++|..++|.++|++.+..||+..|++.+++.+++.+
T Consensus 340 ~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 340 TDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877766555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.6e-09 Score=108.40 Aligned_cols=149 Identities=14% Similarity=0.024 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
++..+.+.+..++....++.+..+++ ++.+++|.+..+.+...+...++..++.+++|+++||+ |||+.+.......+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 326 (398)
T TIGR00895 249 ARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHH
Confidence 34445555556666677777777776 77778999999999999999999999999999999997 99855444333333
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+..++.... .+...+++..++.|++.++..+...++.+|.+|++. |
T Consensus 327 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 372 (398)
T TIGR00895 327 FAVLVGSTL----------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R 372 (398)
T ss_pred HHHHHHHHh----------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H
Confidence 332222211 234556677788999999999999999999999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYI 252 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l 252 (549)
++.+++++....+|..++|.++|++
T Consensus 373 g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 373 ATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999875
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.8e-09 Score=113.63 Aligned_cols=173 Identities=16% Similarity=0.092 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH------------HHHHHHHHHHHHHhHHHHHhhhccchHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~------------~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~ 139 (549)
+.+....++..+.+|++..++|.+++ +.|++..+++. ...+..++..++.++.++++||+ |||+++
T Consensus 291 ~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l 368 (502)
T TIGR00887 291 LGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQ 368 (502)
T ss_pred HHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHH
Confidence 33334445566778888777777774 67876432211 12233445566778899999997 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
+++.++..++.+++.+.... .+ .+ ..+....+...++..+..+....+.+|.+|++
T Consensus 369 ~~~~~~~~~~~~~l~~~~~~---~~--------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~ 424 (502)
T TIGR00887 369 LMGFFILTVLFFVLGFAYNH---LS--------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTR 424 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cc--------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchh
Confidence 88887777766655543110 00 11 11111111222233344556677789999999
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----------cchHHHHHHHHHHHHHHHHHH
Q 008896 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~----------~gw~~~f~i~~~~~~i~~~~~ 276 (549)
. |+++.++.+....+|+.++|.+.+++.+. .++...|++.++..+++.+..
T Consensus 425 ~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 425 Y------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred H------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 9 99999999999999999999999998874 334556666665555554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=108.98 Aligned_cols=160 Identities=16% Similarity=0.057 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++.+++..++..++.+......+.|++..++ +..+.+.......++..++.++.++++||+ |||+++.++.++..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 45556666666666666555555555554555 455666677777888899999999999997 9999999998888887
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh-hhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r~ 228 (549)
.+.+.+.. .+...+++..++.|++.+...+...++++|..+.++.. ..+.+|
T Consensus 301 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 353 (437)
T TIGR00792 301 YLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG 353 (437)
T ss_pred HHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence 76665431 23455666777888999998999999999988743211 112278
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
..++++++...+|..+++.+.+++.+..||
T Consensus 354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 354 LVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999999999999999999999877666
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-08 Score=107.82 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 74 IFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
..+..++.....++...+.+.|+ ++.+|+++.+++.....+.++..++.+++|+++||+ |||+++.++..+..++..+
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~ 341 (438)
T PRK10133 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI 341 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence 34444555566666677888896 567899999999999999999999999999999997 9999998887776655544
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
..+. .+. ..+....+.|++.+...|+..+...+.++++. +.+.+
T Consensus 342 ~~~~----------------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~ 385 (438)
T PRK10133 342 SAFA----------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS 385 (438)
T ss_pred HHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence 4332 111 12455678899999999999999999987643 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHH
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~ 277 (549)
+... ..+|+.++|.+.|++.+..| -+..|+++.++.++.+....
T Consensus 386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~~~ 430 (438)
T PRK10133 386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_pred HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 4332 33678889999999999887 78888877766555554433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.1e-09 Score=111.48 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++...+..++..+.+++....++.|+++.+|.+..+++.......++..++.++.|+++||+ |||+++.++..+..++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG 334 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence 344556666677777778888899999999999999999999989999999999999999997 9999999888888777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++.+... +. .+...++...++.|+|.+...+.......+.+|+++ |++
T Consensus 335 ~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~ 384 (485)
T TIGR00711 335 FYWRAFTFT-----PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IAR 384 (485)
T ss_pred HHHHhccCC-----CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhH
Confidence 776653210 11 234455666788899998888777777788888877 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
+.++++...++|+.+|+.+.+.+.++.
T Consensus 385 ~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 385 GSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-07 Score=99.23 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=119.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc--cc--hHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~--~G--R~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~ 165 (549)
.....|+++++|+++++.....++..+-..+- ++.|.++|.+ +| ||+-++++.++..++.+.+++...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~------- 81 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA------- 81 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc-------
Confidence 34457889999999998887776666655555 4789999986 34 555566677666555555554311
Q ss_pred CCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 008896 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (549)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~ 245 (549)
...+.....+..++..+|......+..+...|....+... |+...++.+....+|..++
T Consensus 82 -----------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~ 140 (433)
T PF03092_consen 82 -----------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVG 140 (433)
T ss_pred -----------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHH
Confidence 0023444556677788899998899999999988655422 7888888888999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 246 p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
..+.|++.+..++++.|.+.+++..+..+..++..+
T Consensus 141 ~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 141 SLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred HHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998887776666554444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.9e-07 Score=91.51 Aligned_cols=142 Identities=14% Similarity=-0.000 Sum_probs=99.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hH-HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RY-WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 96 l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~G-----R~-~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
+..|++++....+..+.+..+... ..+..|+.||+. + || +-+..+..+...+..+.+.+...-.-.
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~------ 77 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES------ 77 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc------
Confidence 345788888877777777666544 577899999987 6 44 455566666666666655542211100
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.+....+.........++..+.|+|.+...++..++.+|..|+++ |.+..++.+....+|..++..+.
T Consensus 78 ------~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 78 ------GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred ------ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 000011111222334455567899999999999999999999999 99999999999999999999999
Q ss_pred HHHhhccc
Q 008896 250 VYIQMEHG 257 (549)
Q Consensus 250 ~~l~~~~g 257 (549)
+.+.+.+.
T Consensus 146 g~lL~~~s 153 (403)
T PF03209_consen 146 GRLLDPFS 153 (403)
T ss_pred HHHccccC
Confidence 98877665
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-08 Score=106.65 Aligned_cols=157 Identities=10% Similarity=-0.038 Sum_probs=110.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 008896 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (549)
Q Consensus 94 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (549)
+++.+++|.+.....+......+...++.+++|+++||+ |||++++++.++..++.++++..... +.
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~----~~-------- 361 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYT----QA-------- 361 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhc----Cc--------
Confidence 445567898877777666667778889999999999997 99999999999888887776643110 00
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhccC-cchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Q 008896 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV-- 250 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~-- 250 (549)
.. .....+.++.+++.+. ..++...+++|.+|++. |++++++.+....+|..+++.+.+
T Consensus 362 -----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 362 -----------PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred -----------cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11 1223334444444433 34677899999999888 999999988888888877765554
Q ss_pred ----HHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 251 ----YIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 251 ----~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
++.+..+|++.|++.++..+++.++.++..+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred HhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 4446788888888877665555555444333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=103.16 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
+..+.++..|...+++ ---..+..+.+.+.++..++..++.++|..-..+.+.++|||.||.+|-|..-++-+.+..+|
T Consensus 45 ~lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 3333344444443333 122335566666777777788888899999999999999999999999887777777777788
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.++.-.. ....+++..+|++.|+|.-....+.+.+...+|..++ ...
T Consensus 124 qliFa~Ggi-------------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~ 172 (459)
T KOG4686|consen 124 QLIFAAGGI-------------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNF 172 (459)
T ss_pred HHHHHhchH-------------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccc
Confidence 877765311 0468899999999999998888889999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g 257 (549)
.+++......+|..+--.+.+++.+..+
T Consensus 173 vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 173 VFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred hhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 9999888888888777777777766543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-08 Score=101.87 Aligned_cols=160 Identities=11% Similarity=0.028 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~ 152 (549)
...+...+....++....+.+.|+.+++|.++.+.+.+.....++..++.+++|+++||+ |||+.+.++..+..++.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~ 288 (385)
T TIGR00710 210 GYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVL 288 (385)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence 333444444555556667778888889999999999999889999999999999999997 9999998888777777666
Q ss_pred HHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHH
Q 008896 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
+...... +. .....+++..++.|++.+...+.......|..| ++ |++..+
T Consensus 289 ~~~~~~~----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~ 338 (385)
T TIGR00710 289 LEITAIL----GL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASA 338 (385)
T ss_pred HHHHHHh----cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHH
Confidence 6543210 00 123344555667888888888888888888876 45 788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 008896 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (549)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~ 263 (549)
+++.....++.+.+.+.+.+.+..+|...+.
T Consensus 339 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 369 (385)
T TIGR00710 339 LFGTLRLVLGAIVGYLVSLIHGNTAWPMSLS 369 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhccccChHHHHHH
Confidence 8777665544444444555555445544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-08 Score=107.19 Aligned_cols=169 Identities=10% Similarity=0.045 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 008896 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~ 153 (549)
+++..++..+....+...+|.+..+.+|.+....+++.+.+.+|..++.++.+++.+++ ++++++..+.+++.++++.+
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence 33334444444444556678888899999999999999999999999999999999986 99999888888888877777
Q ss_pred HHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH
Q 008896 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
+++ .+.+..+++.++.|++.........+.+-...|++. ||+.+++
T Consensus 302 al~----------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si 347 (524)
T PF05977_consen 302 ALS----------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI 347 (524)
T ss_pred hcc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence 765 466777788889999998888888888889999888 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 234 ~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
++.....+..+|..+.|++.+..|-+..+.+.++..+++.++.+
T Consensus 348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888877766555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.9e-08 Score=101.38 Aligned_cols=167 Identities=10% Similarity=-0.001 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
++...+..++.....++...+.++++.+++|++..+.+.....+.++..++.++.|++.||. +|+ .+.++..+..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHH
Confidence 44444444555555556666665555678899999999988889999999999999999984 544 4444444333332
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
.++.... .+.+.+.+..++.|++.+...+...+++.+..|+ + +++.
T Consensus 296 ~~l~~~~---------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~ 341 (394)
T PRK10213 296 LVLTLWG---------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKA 341 (394)
T ss_pred HHHHHHh---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHH
Confidence 2222210 2445566677888999998888888888887763 3 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~ 273 (549)
.+++....++|..+||.++|++.+..|++..+...++...+..
T Consensus 342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 5666677789999999999999999999888877665544433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=109.93 Aligned_cols=153 Identities=13% Similarity=0.047 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
......+..++..+.+++...+++.|+++.+|.+..+++.....+.++..++.+++|++.||+ |||+.+.++.++..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS 338 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 445555666777777777778889999999999999999999999999999999999999997 9999988888888777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++..... . .+.....+..++.|+|.|...+.......+..|+++ ++.
T Consensus 339 ~~~l~~~~~----~---------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~ 387 (495)
T PRK14995 339 FYGLAMTDF----S---------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAA 387 (495)
T ss_pred HHHHHHhcC----C---------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cch
Confidence 766554211 0 233445667788999999988888888888899888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
+.++++...++|..+|+.+.+.+.+
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-08 Score=119.66 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~-~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence 33344444444445555667889999999999988 889999999999999999999999997 9999888888777777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++.+. .+...++++.++.|++.++..+...+++.+.+|++. |++
T Consensus 313 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~ 358 (1146)
T PRK08633 313 LFLLPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGK 358 (1146)
T ss_pred HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhh
Confidence 6666554 345566777888999999988899999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAI 267 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~-~~gw~~~f~i~~~ 267 (549)
++++.++..++|..+++.+++.+.. ..++...|++.+.
T Consensus 359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999888887776654 2345555554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-08 Score=105.98 Aligned_cols=171 Identities=12% Similarity=-0.004 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
+...+..++..+.+.....+.+.|+... .+.+....+.....+.+......++.|++.||. |||+.+.++.++..++
T Consensus 209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~ 287 (395)
T PRK10054 209 LWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIG 287 (395)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHH
Confidence 3344445555555444545666776543 344555556666666666666677889999997 9999998888888887
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++.+.. .+.+.+.++.++.++|.+...|.....+.+..|++. |++
T Consensus 288 ~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~ 334 (395)
T PRK10054 288 LVGFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KAS 334 (395)
T ss_pred HHHHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------cee
Confidence 76665431 244556667788899988888888889999999887 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
+++... ...+|..+||.++|++.++.|....|++.+++..++.++.+
T Consensus 335 ~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 335 YFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 887654 55689999999999999999998888887666666665554
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-08 Score=103.03 Aligned_cols=184 Identities=14% Similarity=0.021 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..|.+.+..++..-+|.++..++|.|+++.+. .........+..+...+..+++|+||||+ ||+|++.++.++..++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence 46777777777777777777789999887663 33333334455677888899999999997 9999999998877776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC---------
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS--------- 220 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~--------- 220 (549)
..+..+.. |. ....+...+.++.+.+.++.|.-...+..++.+.||++.
T Consensus 330 ~~~~~l~l------p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~ 387 (462)
T PRK15034 330 SALLFLTL------PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG 387 (462)
T ss_pred HHHHHHHh------cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence 64433321 10 001345556665555555556666666667777776410
Q ss_pred ------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHh
Q 008896 221 ------KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 221 ------~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (549)
...++.-+...++......+|+.+-|.+.+...+.+| +..+|++..+..++++++.+.
T Consensus 388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0111235677777777888888899988777766654 888888777766665555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.7e-08 Score=101.24 Aligned_cols=152 Identities=15% Similarity=0.204 Sum_probs=103.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 91 NMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~-~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
..++|+.+++|++..+.+++.... .++..++.+++|+++||+ |||+.+.++.++..+..+.+.+.... +
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~----- 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----P----- 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----C-----
Confidence 445677788999999888877654 456788899999999997 99998887777666554443322110 0
Q ss_pred cccccccCCCCCcchhhHHHHHHHH----HHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~ 245 (549)
.+.+.++++. +..|++.+...+....++.+.+|.++ + +++.....+|..++
T Consensus 301 ---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~ 355 (402)
T PRK11902 301 ---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYV 355 (402)
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHH
Confidence 1233333333 34556666667777777777777544 3 33333446677666
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 246 p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
+.++|++.+..||+..|.+.+++.++++++..
T Consensus 356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988877766655543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-07 Score=96.98 Aligned_cols=165 Identities=12% Similarity=-0.002 Sum_probs=118.4
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Q 008896 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~ 140 (549)
.+..++||..++...+..+...+..- -......|....++ +...+.+...+|+..+....+.+-|+.|++ |-|.+.+
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI-~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~l 113 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWI-QYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALL 113 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchhe-eehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHH
Confidence 35667778666666565555544332 22344567777788 666677888999999999999999999996 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhH--HHHHHHHHHHHHhccCcchhhhhhhcccCCC
Q 008896 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM--LYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 141 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
++.++..+|..+=.++.. +.+. ... ...+.+..+.+...-.+...-.-..+-+|++
T Consensus 114 lgt~ln~iGa~Ir~iss~-p~v~---------------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~ 171 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSL-PFVP---------------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP 171 (480)
T ss_pred HHHHHHHHHHHHhhhccC-cccc---------------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc
Confidence 999999999887766532 1111 122 3566777777766666555555666788999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
++ |..+..+-.+++.+|.+++.++...+..+.
T Consensus 172 ~q------ra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 172 DQ------RAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred ch------hhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 98 999999988888888888887777665443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-08 Score=101.58 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.+.+..++....++++..+++.|+++ .|.+..+.+...+.+.++..++.++.|+++||+-+||+++.++.++..++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 44555555566677777888889999865 79999999999999999999999999999999635667777777777777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.+... ... . ...++.|++.+...+...+...+..++++. ++.
T Consensus 277 ~~~~~~~~~--------------------------~~~--~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~ 322 (355)
T TIGR00896 277 LCGLLFAPM--------------------------HGL--W-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAA 322 (355)
T ss_pred HHHHHHhhh--------------------------hHH--H-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHH
Confidence 766654311 111 1 234577999998888877777766554321 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g 257 (549)
.+++.+...++|..++|.+.|++.++.|
T Consensus 323 ~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 323 LSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888999999999999998776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.2e-08 Score=106.16 Aligned_cols=162 Identities=14% Similarity=0.109 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++...+..++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 455566666666666666666667777778888766555544444566778889999999997 9999999999888888
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh-hhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r~ 228 (549)
.+++.+. +. .+.+.+++..++.|+|.+...+...++.+|..|.++.+ ..+.++
T Consensus 308 ~~~~~~~-------~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G 361 (448)
T PRK09848 308 YLLFFWV-------SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG 361 (448)
T ss_pred HHHHHHc-------Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh
Confidence 7766543 11 34556667778899999999999999999998865421 112258
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
..++.+++...+|.++|+.+.+.+.+..||
T Consensus 362 ~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 362 LTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888899999999999999999888765554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-08 Score=102.20 Aligned_cols=172 Identities=13% Similarity=0.092 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+..-++..++.+=+..++.+....|...++|++..+..++.....+..+++.+++|+|.||+ |-|+++.++.+++.+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 555556666666666667888889999999999999999999899999999999999999996 9999999999888776
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+...+. .....+.+.-.+.|+..|+.++..=++.++..|+++ -++
T Consensus 332 ~~~~~~~----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~ 377 (438)
T COG2270 332 ALYLIFL----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR 377 (438)
T ss_pred HHHHHHc----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence 6555443 123335555568899999999999999999999998 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~ 276 (549)
+|++|.+....+..+||...+.+.+.+| -|.++....+...++++++
T Consensus 378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 9999999999999999999998888765 5666655555444444443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.5e-08 Score=103.45 Aligned_cols=151 Identities=11% Similarity=0.018 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
....+|.|+++..| ++.+.+...+...++...+....+++.|+.++.++.+..+.++..++.+++...
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------- 294 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------- 294 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------
Confidence 44567888876655 566777776666555554444456666654476677777777777776666544
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
.+...+.+..++.+++.+...+...+...|..|++. |++.+++++....+|..+||.
T Consensus 295 -----------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~ 351 (400)
T PRK11646 295 -----------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYI 351 (400)
T ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhccc
Confidence 234445556667788888888888999999999988 999999999999999999999
Q ss_pred HHHHHhhccc----hHHHHHHHHHHHHHHH
Q 008896 248 LVVYIQMEHG----WGSAFGALAIAMGISN 273 (549)
Q Consensus 248 i~~~l~~~~g----w~~~f~i~~~~~~i~~ 273 (549)
++|++.+..+ ....+++..+..++..
T Consensus 352 l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 352 GGGWLFDLGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred chHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 9999988642 2344444444433333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-07 Score=101.02 Aligned_cols=208 Identities=13% Similarity=0.105 Sum_probs=149.2
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 69 IAALFIF-GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 69 ~~~~~~~-~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
+.+..++ +..+...+.. +......+-+.+.++++..+.+++.+.+-++..+...+..+..-|. =|-|.+-++.+++.
T Consensus 96 k~fl~~l~~~~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG 173 (735)
T ss_pred chHHHHHHHHHHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence 3343333 4444455544 7777788999999999999999999999999999999999999985 67788899999999
Q ss_pred HHHHHHHHhhhhccc------C---CCCC--------ccccc----ccccCCCC--Ccchh-hHHHHHHHHHHHHHhccC
Q 008896 148 AGLTGITLCATMKVF------M---PNQD--------NCDRI----SQLLGSCE--PAKSW-QMLYLYTVLYITGFGAAG 203 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~------~---~~~~--------~~~~~----~~~~~~~~--~~~~~-~~~~~~~~~~l~g~g~g~ 203 (549)
+|.+++++.-+...- . +.+. .|+.. ++..++|. ..... -..+++++.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 999988764111000 0 0000 00000 00111222 12222 234677889999999999
Q ss_pred cchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------------------ccc-hHHHHHH
Q 008896 204 IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------------EHG-WGSAFGA 264 (549)
Q Consensus 204 ~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~------------------~~g-w~~~f~i 264 (549)
+++...+|+=|-...++ -...+++++....+|+++|.++++++.+ +.| |+.+|.+
T Consensus 254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 99999999999888887 7888999999999999999999988753 123 8889998
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 008896 265 LAIAMGISNMLFFIGTPLYR 284 (549)
Q Consensus 265 ~~~~~~i~~~~~~~~~~~~~ 284 (549)
.+.+.++..+.+++..+..+
T Consensus 328 ~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHhCcccCc
Confidence 88888877777776655443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-07 Score=98.67 Aligned_cols=166 Identities=10% Similarity=-0.038 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH---HHHHH-HHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAI-FTT 144 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~---~~~~i-~~~ 144 (549)
+..|.+.+..++....+|++..++|+|+++ .|++.. .+....+...... +..++++||. .|| +.... ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 356778888999999999999999999964 678764 4444444444333 3457888886 543 33222 332
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..+....+... .+....++...+.+++..+..+...++.+|.+|++.
T Consensus 266 ~~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---- 313 (368)
T TIGR00903 266 LIAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL---- 313 (368)
T ss_pred HHHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh----
Confidence 222222222221 112233444555667777777888899999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
|+++.++.+...++|+.++|.+.+.+.. |....|.+.++..+++.+..
T Consensus 314 --rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 314 --HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred --cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987773 66667766665555554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.5e-08 Score=106.55 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHH
Q 008896 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191 (549)
Q Consensus 112 ~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (549)
.+..+...++.+++++++||+ |||+++.++.++..++.+++.+... ......+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~ 414 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV--------------------------DLYFLRT 414 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------------CchHHHH
Confidence 344566677888999999997 9999999998887777666554311 1123334
Q ss_pred HHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 008896 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (549)
Q Consensus 192 ~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i 271 (549)
+..++.+++.++..+....+.+|.+|++. |++++++.+....+|+.++|.+.+ +. ..++..++++.++..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~ 486 (505)
T TIGR00898 415 ALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALL 486 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHH
Confidence 44455566667777888899999999988 999999999999999999999988 43 45566677766666555
Q ss_pred HHHHHHh
Q 008896 272 SNMLFFI 278 (549)
Q Consensus 272 ~~~~~~~ 278 (549)
+.++.++
T Consensus 487 ~~~~~~~ 493 (505)
T TIGR00898 487 AGILTLF 493 (505)
T ss_pred HHHHHHc
Confidence 5554443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-08 Score=115.96 Aligned_cols=184 Identities=7% Similarity=-0.165 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++...+..++..+.++.+.++++.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+.++.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 455555555666666667778899999999999999999999999999999999999999886 6666555555555444
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.+........+.+ .+. ..+-. ...+.+.++++.++.|++.+...+...+++.+.+|++. ||+
T Consensus 305 ~~~l~~~~~~~~~~~~~-~~~------~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~ 370 (1140)
T PRK06814 305 GLDLAFASSSVPAEPAQ-LKS------ILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RAR 370 (1140)
T ss_pred HHHHHhccccccccccc-ccc------hhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------cee
Confidence 44333210000000000 000 00000 00234566777888999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~-~~gw~~~f~i~~~~ 268 (549)
.++.++....+|..+++++++.+.+ ..++...|++.+++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999998874 44666666554443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-06 Score=90.63 Aligned_cols=107 Identities=15% Similarity=-0.005 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCC---ChH----HHHHHHHHHHHHHHHHHhHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008896 90 VNMVTFMFYVMHK---SFA----DSSNAVNNFLGISQASSVLGGFLADAYLG-RYWTIAIFTTIYLAGLTGITLCATMKV 161 (549)
Q Consensus 90 ~~l~~yl~~~l~~---s~~----~a~~~~~~~~~~~~~~~l~~G~lsD~~~G-R~~~~~i~~~l~~~g~~~~~~~~~~~~ 161 (549)
...|+|+++..+. +.. ..+...++..+..++..++-|-++|.. | ||+.+.+..++.++++..+++...
T Consensus 36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~--- 111 (438)
T COG2270 36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP--- 111 (438)
T ss_pred ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC---
Confidence 4568888887665 332 334566777777888888999999976 7 666777777777777777776511
Q ss_pred cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh
Q 008896 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
+.+....++...+..++..+......+++.|..++++.+
T Consensus 112 ----------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~ 150 (438)
T COG2270 112 ----------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG 150 (438)
T ss_pred ----------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC
Confidence 124455555666778888888888999999999988833
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-07 Score=100.03 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
|....+++..++..++........+.|.+..+|.+ ...+....+..++..++.++.++++||+ |+|+++.++.++..+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 35666777777777777767777777777778887 4456666678888889999999999997 999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh-hhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL 227 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r 227 (549)
+.+++.+... .+.+.+++..++.|++.++......++++|..+.++.+ .++..
T Consensus 303 ~~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~ 356 (428)
T PF13347_consen 303 GFLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRRE 356 (428)
T ss_pred HHHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCch
Confidence 9888877621 36788888899999999999999999999999855422 12336
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
|..++.+.+...++.++++.+.+.+.+..|+
T Consensus 357 g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 357 GMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 7888889999999999999999988765544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=95.49 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhcCCChHHH--HHHHHHHHHHHHHHHhHHHHHh
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNM-----------------VTFMFYVMHKSFADS--SNAVNNFLGISQASSVLGGFLA 129 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l-----------------~~yl~~~l~~s~~~a--~~~~~~~~~~~~~~~l~~G~ls 129 (549)
+..+.+...-|...+.+|+++-.. +.+++-..+-..... -.=+.+..+.-..|.++.+++-
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 355566667778888888865322 222222111111111 1223344566778899999999
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhh
Q 008896 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVS 209 (549)
Q Consensus 130 D~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 209 (549)
||+ |||+++..+.+++.++.+++..+.. ++ .-..+++.+|++ ..+.+.+.+
T Consensus 406 erl-GRKkTMal~l~~f~iflfll~~c~~-----------------------rn-~~tvllf~araf----isg~fqvaY 456 (528)
T KOG0253|consen 406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-----------------------RN-AYTVLLFTARAF----ISGAFQVAY 456 (528)
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHhcC-----------------------cc-hhHHHHHHHHHH----HhchheEEE
Confidence 996 9999999999999998888775411 01 122344555554 445566788
Q ss_pred hhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 210 ~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.|..|.+|+.. |+.+.+.-.....+|+.+.|+++
T Consensus 457 vYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 457 VYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred EecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence 99999999998 99999999999999999999998
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.8e-07 Score=90.61 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=110.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 008896 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (549)
Q Consensus 94 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (549)
..+-+++|+++.+.+.+...-.+...+...+.|.++||+ |||+..++..+++.+..+.--.
T Consensus 58 Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~------------------ 118 (354)
T PF05631_consen 58 YALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS------------------ 118 (354)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc------------------
Confidence 344468999999998877777777777778999999997 9999999999998887754332
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHH
Q 008896 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYI 252 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~i~p~i~~~l 252 (549)
.+...++++|++-|+++.....+..+.+......+.-+ ..-...-++... +.+.+-+.++..++-++
T Consensus 119 -----------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l 186 (354)
T PF05631_consen 119 -----------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVL 186 (354)
T ss_pred -----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 46888999999999999999888877664332222110 011344444433 33444556666666677
Q ss_pred hhccch--HHHHHHHHHHHHHHHHHHHhhcccc
Q 008896 253 QMEHGW--GSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 253 ~~~~gw--~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (549)
.+..|. .++|.....+.+++.++.....++.
T Consensus 187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred HHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence 766654 7788888777777666655544443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.3e-07 Score=96.65 Aligned_cols=191 Identities=13% Similarity=0.042 Sum_probs=129.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
.++.....+...+...+.-........+.+-++-|++..++.++.........+..+++.++-||+ |||+.++++..+.
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLM 345 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 334455555566665554433333445566677899999999999889999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhh-HH-HHHHHHHHHHHhc-cCcchhhhhhhcccCCCCChhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ-ML-YLYTVLYITGFGA-AGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~g~g~-g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
.+..+++.......... .. .. ..+++.++..++. -++-|...-+.+|++|+..
T Consensus 346 ~~~~~~~~~~~~l~~~~---------------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~--- 401 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSF---------------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA--- 401 (485)
T ss_pred HHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc---
Confidence 98888877654321100 00 11 1234444433333 3346777888899999998
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008896 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (549)
|..++++-.....+...+-.+.-..+.+..|- +.|.+-++..++..+..+...|+.|.+
T Consensus 402 ---R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 402 ---RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 99999997777777766666666667777665 455555555555555555656665544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.2e-07 Score=95.12 Aligned_cols=158 Identities=6% Similarity=-0.061 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 008896 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (549)
Q Consensus 84 ~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~ 163 (549)
....+...++.|+++.+|.+..+.+.......++..++.++.+++.|+. ++++++.++..+ .+..+.+...
T Consensus 220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~------- 290 (393)
T PRK11195 220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ------- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH-------
Confidence 3334445567788888999999999999999999999999999999986 988888777533 2222222222
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 008896 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (549)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 243 (549)
.+.+...+..++.|++.+...+...+.+.+..|++. ++++.+++.++..++|..
T Consensus 291 ---------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~ 344 (393)
T PRK11195 291 ---------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAML 344 (393)
T ss_pred ---------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHH
Confidence 244555667778899988888878888777644322 168899999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 244 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 244 i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (549)
++..+.+.+ +..|-++.+.+..+..++...+.+
T Consensus 345 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 345 LMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999888855 566766666665555444444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-07 Score=99.11 Aligned_cols=165 Identities=12% Similarity=-0.025 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
|.++.+++..++..+..+......+.|.+..++ +....+.......++..++.++.++++||+ |||+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 456666677777777666555554444433333 445555566666677888889999999997 999999988887776
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCCh-hhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK-DYKTHL 227 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~-~~~~~r 227 (549)
+.+.+.+... .+. .+...+++..++.|++.+...+...++++|..|.++- ..++..
T Consensus 309 ~~~~~~~~~~----~~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~ 365 (473)
T PRK10429 309 SCGVLLLMGL----AAP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE 365 (473)
T ss_pred HHHHHHHHhc----cCc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence 6655543211 011 3455566677788899999999999999999774421 111224
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
|..+++..+..-+|.++++.+.|++.+..|+
T Consensus 366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6678889999999999999999998766555
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.7e-08 Score=104.62 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc--hHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~G--R~~~~~i~~~l~ 146 (549)
+.++.+.+...+..++++.....++.|.. ..++++.+++.++++..+...++.++.|+++|+. . ++.+..+++++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 47777888888888888888888888887 8999999999999999999999999999999986 5 334444555555
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.+..+.+++. .+...++..-++.|++.|......+..+.|..+.++
T Consensus 376 gl~~~~~p~~----------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------ 421 (509)
T KOG2504|consen 376 GLARLFLPFA----------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------ 421 (509)
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence 5555444443 456777777888999999998888899999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHhhc
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
-..++++..+...++..+||.++|++.+.+| |...|+.+.+..+++.+.+++..
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999999999999888 99999998888888776665544
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-07 Score=96.46 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
..+.+.+..++..++++.+.+.++.|+++ +|++..+.+.+..... ++..++.+++|+++||+ |||+.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 35556666667778888888899999987 9999999887777655 56788999999999997 999998888877777
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+..+..+........ . ....+.+.+..+.++.+++.+...+...+++.|.+|++. |+
T Consensus 288 ~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 344 (356)
T TIGR00901 288 TNAGFVWLASNGHHD--------------G---ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA 344 (356)
T ss_pred HHHHHHHHHhcCccc--------------c---cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence 655444321100000 0 000134556667788899999999999999999999999 99
Q ss_pred hHHHHHHHHHH
Q 008896 229 RFFNFFYLSVT 239 (549)
Q Consensus 229 ~~~~~~~~~~~ 239 (549)
+.+++++...+
T Consensus 345 ~~~g~~~~~~~ 355 (356)
T TIGR00901 345 TQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHh
Confidence 99999776554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-06 Score=91.81 Aligned_cols=150 Identities=12% Similarity=-0.006 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 008896 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (549)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~ 159 (549)
+....++....+.+.|++ ++|++..+.+.......++..++.++++++.||+ |||+.+....++..++.+.+.+....
T Consensus 214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (401)
T PRK11043 214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL 291 (401)
T ss_pred HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555666777765 5899999888877777788888999999999997 99988766665555544433322110
Q ss_pred cccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHH
Q 008896 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (549)
.+ .+...++++..+.+++.+...+.......|..| ++ |+++.++++....
T Consensus 292 ---~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~ 341 (401)
T PRK11043 292 ---SH--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQL 341 (401)
T ss_pred ---cc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHH
Confidence 00 233445555667788888888888887778776 45 8999999888878
Q ss_pred HHHHHHHHHHHHHhhccchHHH
Q 008896 240 VGAIVAFTLVVYIQMEHGWGSA 261 (549)
Q Consensus 240 ig~~i~p~i~~~l~~~~gw~~~ 261 (549)
.++.+++.+.+.+.+.......
T Consensus 342 ~~~~~~~~~~g~l~~~~~~~~~ 363 (401)
T PRK11043 342 GLCFLASLLVSALISTPLLTTG 363 (401)
T ss_pred HHHHHHHHHHHHccCCChhHHH
Confidence 8888888888888765444443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9e-07 Score=89.21 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..|.+.+..-+..+.+|.+..|+|.++. +.|+|..+++..++...+......+++-++++|.-.+|+........+.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 5667777777889999999999999985 689999999999999999999999999999998767899999999999999
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.+. |. +...+. .+++|+|.|+.++..-.++.+..++.+. -++
T Consensus 288 ~~G~~~~-------P~--------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~ 333 (395)
T COG2807 288 LVGLLLA-------PG--------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAA 333 (395)
T ss_pred HHHHHHh-------hh--------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHH
Confidence 9888765 21 222222 4789999999999999999998775542 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGI 271 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i 271 (549)
..++-+-...+=+.+||.+.|++.|..| |+......+...++
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~ 376 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL 376 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence 5556566666778889999999999875 87766554444333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-06 Score=90.54 Aligned_cols=147 Identities=10% Similarity=-0.093 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+...+..++...+.+....+.+.++.+.+|++..+.+.......++..++.+++|+++||+ |||+++.++..+..+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~ 275 (377)
T PRK11102 197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI 275 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 3334444444455555666667788888999999999999999999999999999999997 999999888876554333
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
.+...... + .+...+.++..+.+.+.+...+.......|..| +. +++..
T Consensus 276 ~~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~ 324 (377)
T PRK11102 276 WLVVSALL----D--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTAS 324 (377)
T ss_pred HHHHHHHH----h--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHH
Confidence 32222110 0 123333444444444455555555566677766 55 77777
Q ss_pred HHHHHH-HHHHHHHHHHHHH
Q 008896 232 NFFYLS-VTVGAIVAFTLVV 250 (549)
Q Consensus 232 ~~~~~~-~~ig~~i~p~i~~ 250 (549)
++.... ..+|..+++.+++
T Consensus 325 ~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 325 SLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 775443 3466666666543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=96.80 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s-~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
.++...++..+.++....+++.|+.+.+|.+ ..+.+...+...++..++.++.|+++||+ |+++...+......++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 288 (352)
T PF07690_consen 210 ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGAL 288 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH
Confidence 3444455555566667888899999999999 78899889999999999999999999997 988888877777776666
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
.+.+.... .+....++..++.|++.+...+....++.|.+|+++ |++..
T Consensus 289 ~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 337 (352)
T PF07690_consen 289 GLLLLPFS-------------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAF 337 (352)
T ss_dssp HHCCSHHH-------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHH
T ss_pred HHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence 65543220 244566667788999999999999999999999988 99999
Q ss_pred HHHHHHHHHHHHHHH
Q 008896 232 NFFYLSVTVGAIVAF 246 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p 246 (549)
++++...++|..+||
T Consensus 338 g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 338 GLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.9e-07 Score=94.32 Aligned_cols=164 Identities=9% Similarity=-0.050 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+...+..++......++.++++.|+.+. .+.+...++...+.+..+..++.+++|+++||+ ++|+++.++..+..+.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 33444455555555556778889998653 245555566677777788999999999999997 9999988888777777
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.++..+. .+. ....+.++.|++.+.++|.+.+...+..+++. ...
T Consensus 313 ~ll~~~~----------------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~ 357 (410)
T TIGR00885 313 CLGSIFA----------------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYG 357 (410)
T ss_pred HHHHHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhh
Confidence 6666553 111 23566677888899999999999999998665 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc------chHHHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMGIS 272 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~------gw~~~f~i~~~~~~i~ 272 (549)
. +....+ .+|+++.|.+.|++.|.. +.+..|.++.++.+..
T Consensus 358 s-~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 358 A-AGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred H-HHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 2 222223 399999999999999954 4788888877665443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-06 Score=90.96 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 008896 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 87 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~ 156 (549)
......+.|+.+++|++..+.+.......++..++.++.|+++||+ |||+++.++..+..++.+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888999999988888888889999999999999997 99999999988888877776654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=9e-07 Score=94.86 Aligned_cols=160 Identities=11% Similarity=0.008 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
++.+++..++...+...... +..|..+..--+....+.......+...++.+++++++||+ |||+.+.++.++..++.
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~ 308 (444)
T PRK09669 231 WRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 34444444444444432223 34444333222233334445555677778888999999996 99999988876665543
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh-hhhhhhh
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDR 229 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r~~ 229 (549)
+...+. +. .+...+++..++.|++.++..+...++++|..+.++.+ .++..+.
T Consensus 309 ~~~~~~-------~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~ 362 (444)
T PRK09669 309 ALIFFI-------PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGL 362 (444)
T ss_pred HHHHHh-------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchH
Confidence 332221 11 35566777778899999999999999999999744321 1122466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
.++.+.+...+|.++|+.+++++.+..|+
T Consensus 363 ~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 363 VFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 78889999999999999999998876665
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-06 Score=86.20 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---------
Q 008896 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------- 255 (549)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~--------- 255 (549)
.+...++++.+++|.|.+..++..++++++..++++ +.+.+++......+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 578889999999999999999999999999999888 89999999999999999999999987632
Q ss_pred -------cchHHHHHHHHHHHHHHHHH
Q 008896 256 -------HGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 256 -------~gw~~~f~i~~~~~~i~~~~ 275 (549)
..|+++|++.++...+..++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888655554443333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.3e-07 Score=95.07 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch----HHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR----YWTIAIFTT 144 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR----~~~~~i~~~ 144 (549)
+.+|.+.+..++...+++.+..++|.|+.+.+|++..+.++..++..+...+..+++|.+||++.-| +.+..+...
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 4889999999999999999999999999999999999999999999999999999999999987221 122222222
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+...+..++.+.. .+.+ |. .. ......+.++..+.|+..++..-+. .|..| +.
T Consensus 338 i~~~~~ai~l~~l---~~~~----~~----------~~-~~a~~~l~~~~~~~g~~~~Gf~~~~----~~~ap-q~---- 390 (466)
T KOG2532|consen 338 IAFGGPAVFLLVL---AFTS----DE----------HR-LLAVILLTIAIGLSGFNISGFYKNH----QDIAP-QH---- 390 (466)
T ss_pred HHHHHHHHHHHee---eecC----CC----------cc-hHHHHHHHHHHHHcccchhhhHhhh----hhccc-hH----
Confidence 2222222211110 0111 00 00 0112222222233333333332222 22233 23
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHHHhh
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~---~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
-+..+++.+...++.+.++|.+.+.+..+ ..|++.|++.++..++..+++.+.
T Consensus 391 --a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 --AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 58888999999999999999999998842 369999999998888877666553
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-05 Score=85.93 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhcCCChHHH-HHHHHHH----HHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008896 88 LSVNMVTFMFYVMHKSFADS-SNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a-~~~~~~~----~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~ 162 (549)
...+...+.....+.+.... ....... .+...+..++-|.++|++ |||..+.+..+...+..+.+.+.
T Consensus 40 ~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~------ 112 (463)
T KOG2816|consen 40 VMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ------ 112 (463)
T ss_pred chhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH------
Confidence 33566667666666543322 2223333 456677788999999997 99999999988877776666553
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHH--hccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHH
Q 008896 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGF--GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~i 240 (549)
. +++++ +.++ +.+...+...++++|....++ |...+++.+.+...
T Consensus 113 -----------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~ 159 (463)
T KOG2816|consen 113 -----------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGA 159 (463)
T ss_pred -----------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHH
Confidence 1 22333 3333 334566778889999999888 99999999999999
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 008896 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL 287 (549)
Q Consensus 241 g~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~ 287 (549)
+..++|.+++++.+..|....|++.++..++..+..++..++..+++
T Consensus 160 ~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 160 GLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred HHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 99999999999999999999999999888888777776666654443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.56 E-value=9e-09 Score=112.24 Aligned_cols=203 Identities=14% Similarity=0.090 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 008896 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~ 153 (549)
+.+..++. +..++......+-+.+.|+++.++++++.+.+-++..+..++..++.+|. -|-|.+.++.+++.+|.+++
T Consensus 8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHH
Confidence 33444455 66667777778889999999999999999999999999999999999985 67788889999999999988
Q ss_pred HHhhhhcccCC-C------------CCcc-----cccccccCCCC----CcchhhHHHHHHHHHHHHHhccCcchhhhhh
Q 008896 154 TLCATMKVFMP-N------------QDNC-----DRISQLLGSCE----PAKSWQMLYLYTVLYITGFGAAGIRPCVSSF 211 (549)
Q Consensus 154 ~~~~~~~~~~~-~------------~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 211 (549)
++.-+...... . .+.| .....+...|. .....-...++++.++.|+|....++...+|
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 86422211110 0 0112 00000001111 1112224677889999999999999999999
Q ss_pred hcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---------------------ccc-hHHHHHHHHHHH
Q 008896 212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------------------EHG-WGSAFGALAIAM 269 (549)
Q Consensus 212 ~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~---------------------~~g-w~~~f~i~~~~~ 269 (549)
+=|-.+++. -...+++++....+|+++|.++++.+.. +.| |+.+|.+.++..
T Consensus 166 iDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 166 IDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999888 7888899999999999999888876642 123 888888777776
Q ss_pred HHHHHHHHhhccccc
Q 008896 270 GISNMLFFIGTPLYR 284 (549)
Q Consensus 270 ~i~~~~~~~~~~~~~ 284 (549)
++..+.++...|+.+
T Consensus 240 ~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLP 254 (539)
T ss_dssp ---------------
T ss_pred HHHHHHHHcCCccCC
Confidence 666666655544443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-06 Score=92.11 Aligned_cols=187 Identities=11% Similarity=0.092 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH----HHHHHHHHHHHHHHHHhHH----HHHhhhccchHHHH--
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLG----GFLADAYLGRYWTI-- 139 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~----a~~~~~~~~~~~~~~~l~~----G~lsD~~~GR~~~~-- 139 (549)
.+..+++..++..+.+....+.++.|..+..+.+... .+++.++-.+...+..++. .++.+|..+.+...
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 4444555555666666667777888887765543211 3444444444444443333 34555422333333
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
.+++++..++.+.+++...... .+...+.+++++..++.++|.....|...++.++..|++
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~-------------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~ 413 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFAD-------------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR 413 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence 6788888877777665421100 001157888999999999999999999999999999998
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
. |++.++++.+...+|..+++.+.....+..+|.+.|...++..++..+++++..+
T Consensus 414 ~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 414 L------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999888777778888887777666655555544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.8e-07 Score=91.76 Aligned_cols=139 Identities=11% Similarity=-0.000 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
.+.+.+..++.....+.+..+.+.|+++.+|++..+++...+.+.+...++.+++|+++||+ |||+.+..+..+..++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence 34444455555556667778889999999999999999888889899999999999999997 99988887776666665
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
.++.+... +. .+...+++..++.+++.|...+...+..+|.+| ++ +++.
T Consensus 306 ~~~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~ 354 (366)
T TIGR00886 306 FLVVLGLV-----SP-------------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAV 354 (366)
T ss_pred HHHHhcCC-----Cc-------------------chHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccH
Confidence 55543210 00 034444555556666666666777788888887 35 8888
Q ss_pred HHHHHHHHHHH
Q 008896 231 FNFFYLSVTVG 241 (549)
Q Consensus 231 ~~~~~~~~~ig 241 (549)
.++.+...++|
T Consensus 355 ~g~~~~~~~~g 365 (366)
T TIGR00886 355 SGLVGAIGNLG 365 (366)
T ss_pred HHHHHHhccCC
Confidence 88877766655
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=84.30 Aligned_cols=139 Identities=12% Similarity=-0.071 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCc
Q 008896 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (549)
Q Consensus 89 ~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~ 168 (549)
....+.|+++.+|.+..+.+........+..++.++.+++.||+ ||+.. .......++.+.+...... ..
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~----~~--- 296 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMW--QSVICCLLAGLLMWIPGWF----GV--- 296 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHh----cc---
Confidence 34556788888999999888888777788888888888899986 73332 2222222222222111000 00
Q ss_pred ccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008896 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (549)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i 248 (549)
.+.+.+.++.++.+++.+...+.......|.+|+ + ++...++.+...++|..+++.+
T Consensus 297 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~ 353 (394)
T PRK11652 297 ----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALL 353 (394)
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHH
Confidence 2345566677888899999899999999898873 4 7888889888889999999999
Q ss_pred HHHHhhccchHH
Q 008896 249 VVYIQMEHGWGS 260 (549)
Q Consensus 249 ~~~l~~~~gw~~ 260 (549)
++++.....+..
T Consensus 354 ~~~~~~~~~~~~ 365 (394)
T PRK11652 354 SAMLPQTGQFSL 365 (394)
T ss_pred HHHccCCchHHH
Confidence 998876644443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=84.47 Aligned_cols=179 Identities=8% Similarity=0.002 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
+...++..++...+.-....+...|+++.-+.+....+...++..+.-.+.-.+.+++-.|+ |-++++.++.+.+++=.
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 33444445555555555667788898755447777777666676777777778889999997 99999999999888866
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
.+++.... |. ........++..+.|+..+........++.+..|++. |+++
T Consensus 288 ~l~a~~~~-----~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~ 338 (400)
T PF03825_consen 288 LLYAYFSD-----PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATA 338 (400)
T ss_pred HHHHHhcC-----Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHH
Confidence 66655411 00 0111223344567899999999999999999999999 9999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhccchHH------HHHHHHHHHHHHHHHHHhh
Q 008896 231 FNFFYLS-VTVGAIVAFTLVVYIQMEHGWGS------AFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 231 ~~~~~~~-~~ig~~i~p~i~~~l~~~~gw~~------~f~i~~~~~~i~~~~~~~~ 279 (549)
.+++... ..+|..+|..++|++.++.|-+. .+.++++..++..+++++.
T Consensus 339 Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 339 QGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9997764 67999999999999999877443 3444555444444444443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-05 Score=83.63 Aligned_cols=179 Identities=8% Similarity=0.057 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~---s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
+.+|...+........++..-...+.|.+..++- ++...+...++-.+.-++.-.+..++-+|+ |.|+.++++.++
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence 3555555444444444443333467787765543 334456667777777788888899999997 999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+++=.++++++ .+.+.+.+...+.|+-.+.......-++++.+|++-
T Consensus 299 ~~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl----- 345 (412)
T PF01306_consen 299 MAIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL----- 345 (412)
T ss_dssp HHHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG-----
T ss_pred HHHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH-----
Confidence 99888888876 577888999999999999999999999999999877
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 226 ~r~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
..+...+ ++++..+|..+.+.++|++.|+.|++..|++.+.++++..++..+..++
T Consensus 346 -sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 346 -SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp -HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 7777777 5678899999999999999999999999988877766666665554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-06 Score=87.81 Aligned_cols=161 Identities=14% Similarity=0.040 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.....++..++...++....+..+.|.+..+|.++....+.......+..++.++..+|++|+ |+|+++.++.++.+++
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG 315 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 445555567777777766666667777778888888888888888888888899999999997 9999999999999999
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChh-hhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-~~~~r~ 228 (549)
.+++.+.. . .+..++++..++.++|.+...+...++++|..+-.+-+ .++.-|
T Consensus 316 ~~~~~f~~-------~-------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG 369 (467)
T COG2211 316 YLLLYFTP-------A-------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG 369 (467)
T ss_pred HHHHHhhc-------C-------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence 99988862 1 46788888889999999999999999999998854422 112235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~g 257 (549)
..++.+.+..=+|.+++..+.|++....|
T Consensus 370 i~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 370 IVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55666777777888888888888765444
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-05 Score=77.53 Aligned_cols=144 Identities=21% Similarity=0.268 Sum_probs=108.1
Q ss_pred HHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 008896 93 VTFMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 93 ~~yl~~~l~~s~--~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (549)
...+..+++.+. ...+...+.+.+...++.++.|.++||+ |||+.+.++.....++.+.+.+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~------------ 91 (338)
T COG0477 25 LPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN------------ 91 (338)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc------------
Confidence 334444555555 4778888899999999999999999997 9998888888765555444444310
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCC-CChhhhhhhhhHHHHHHH-HHHHHHHHHHHH
Q 008896 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAFTL 248 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~i~p~i 248 (549)
.+...+++.|++.|++.+...+...++++|.+|. +. |+...+.... ...+|..++|.+
T Consensus 92 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T COG0477 92 --------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLL 151 (338)
T ss_pred --------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467788889889999999999999999999997 34 8888888777 577888888877
Q ss_pred HHHHhhc--cchHHHHHHHHHHH
Q 008896 249 VVYIQME--HGWGSAFGALAIAM 269 (549)
Q Consensus 249 ~~~l~~~--~gw~~~f~i~~~~~ 269 (549)
++.+... .+|++.|.+.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 152 AGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
Confidence 7766554 57888665554443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.9e-05 Score=76.03 Aligned_cols=155 Identities=12% Similarity=0.113 Sum_probs=105.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
||........+..+.. +.|.... ..+.+++.+|++++|...+-..-.++..++ ++.|.+.|++ |.+.++.++.+..
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLG 76 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHH
Confidence 4544443344433332 3333433 357889999999999999988888888876 7889999986 9999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.+|+.+++++..-.. + +...+.+.+..++.+.+.+...........+.||. +
T Consensus 77 ~~GY~~~~l~~~~~i--~-------------------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------ 128 (250)
T PF06813_consen 77 FVGYGLLWLAVSGRI--P-------------------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------ 128 (250)
T ss_pred HHHHHHHHHHHhCcc--C-------------------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence 999999887633111 0 12455566666666666555555555556688984 6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
||...++.-....+++.+=..+-..+.
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 899999866666666655444444333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.9e-05 Score=81.91 Aligned_cols=159 Identities=10% Similarity=0.020 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
..++...++..+...........|.+..+|. ....+.+...+.++..++.+++++++||+ |+|+++..+..+..+..+
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~ 308 (460)
T PRK11462 231 RIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISL 308 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333333333443 33344566677788888999999999997 998887655544433333
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh-hhhhhhH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRF 230 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~~~ 230 (549)
++.+. +. .+...+++..++.|++.++..+...++++|..+.++-++ ++..+..
T Consensus 309 ~~~~~-------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~ 362 (460)
T PRK11462 309 AMFFV-------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGIS 362 (460)
T ss_pred HHHHh-------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHH
Confidence 32222 11 223334445566788877777777888898877433111 1113444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw 258 (549)
++.+.+...+|.++++.+++++.+..||
T Consensus 363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 363 FAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6667788899999999998888765554
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.5e-05 Score=78.19 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.-.+..|+..-+-..+.++++.|+.+..|.+..+++..++.+.++.++|..++.++-.|+ -..|.+.+...+-.+-
T Consensus 237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill 315 (422)
T COG0738 237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL 315 (422)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 334444455555444445668899999988999999999999999999999999999999986 8778777766544444
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+...+. .+ ..-+.+.++.|++.+.++|.+.+...+..+++.+ .++
T Consensus 316 ~~~~~l~----------------------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s 361 (422)
T COG0738 316 LLAVALI----------------------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGS 361 (422)
T ss_pred HHHHHHh----------------------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccc
Confidence 4444333 12 2345566789999999999999999999995542 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~ 263 (549)
. .-....+|+++-|.+.|++.|..|-...+.
T Consensus 362 ~---~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 362 G---LLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred e---eeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 2 222345899999999999999998777765
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.1e-05 Score=76.89 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 008896 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (549)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~ 154 (549)
+..-++..++++.==..+-+|--+.||++..+.+.....+.++..++-.+.|++..+-.|.+++..+++.+..++..+..
T Consensus 214 ~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii 293 (403)
T PF03209_consen 214 FVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII 293 (403)
T ss_pred HHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 33334444555433345668888899999999999999999999999999999888656899999999998888887777
Q ss_pred HhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHH
Q 008896 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (549)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 234 (549)
++... .+.+.+..+.+++|++.|.+....-+.+-|+..+++ -|.+++.|
T Consensus 294 ~a~~~-------------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~W 342 (403)
T PF03209_consen 294 LAGPL-------------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAW 342 (403)
T ss_pred HHHhc-------------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHH
Confidence 66331 356788999999999999999888899999998887 78999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc----------cchHHHHHHHHHHHHHHHHHH
Q 008896 235 YLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 235 ~~~~~ig~~i~p~i~~~l~~~----------~gw~~~f~i~~~~~~i~~~~~ 276 (549)
.....+...++..++|.+.|. .+|..+|.+-++..++++.+.
T Consensus 343 GaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 343 GAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888877652 346677777766666555543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.3e-05 Score=82.53 Aligned_cols=174 Identities=14% Similarity=0.114 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCCh------HHHHHHHHHHHHHHHHHHhHH----HHHhhhccchHHHHHHHHHHH
Q 008896 79 MAERMAYFGLSVNMVTFMFY--VMHKSF------ADSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~--~l~~s~------~~a~~~~~~~~~~~~~~~l~~----G~lsD~~~GR~~~~~i~~~l~ 146 (549)
++....+|.+...++.++.. ..+.+. ...++..++-.+...+..++. +++.+|+ +..+.+.++.++.
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~ 360 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLC 360 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHH
Confidence 34455566666666656543 111111 113333344343334443444 6666664 7778889999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+.+.+......- | ...+.+++++..++.++|.+...|...+++.+..|++.
T Consensus 361 ~l~f~~l~~~~~~~~~----------------~---~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------ 415 (500)
T PRK09584 361 SGAFLVLPLGAKFAND----------------A---GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------ 415 (500)
T ss_pred HHHHHHHHHHHHhcCC----------------C---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------
Confidence 9998887765321110 0 01345678889999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~----------~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++.++.++++..+|+.++..+.+.... ..++.+.|...++..++..+++++
T Consensus 416 rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 416 MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888877776653321 123667777666554444443333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.1e-05 Score=84.05 Aligned_cols=176 Identities=7% Similarity=0.033 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH-------HHHHHHHHH
Q 008896 78 EMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-------TIAIFTTIY 146 (549)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~l~~s~----~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~-------~~~i~~~l~ 146 (549)
..+....+......++.|.++..+.+. ....++.+...+...+..++.|++.||+ |||+ -+.++.++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 444444555555667777765333321 1223344444444555666678999997 9886 377777777
Q ss_pred HHHHHHHHHhhh-hcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 147 LAGLTGITLCAT-MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 147 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.++.+.++.... ..... ...+.++++...++.|+|.+...+....++.+..|++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~-------------------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~----- 412 (489)
T PRK10207 357 SLGFLTAAAAGMWFADAQ-------------------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL----- 412 (489)
T ss_pred HHHHHHHHHHHHhhcCCC-------------------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH-----
Confidence 777655432211 00000 01346667778889999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~----------~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
++..++.+++...+|..+|..++.+... ...+.+.|...++..++..+++++.
T Consensus 413 -~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 413 -MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765521 1124566666555555444444443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00013 Score=77.59 Aligned_cols=169 Identities=12% Similarity=0.058 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.++...+..++....++.....+|.|+++.+|.+..+.++......++..++..+.+.+.++. ++++.+.....+..++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 455555555666666667777788899999999999999887767777777766666655434 4444444444444445
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++.+.... .+ .+....+++.++.++|.+...++.....- .+.+.+ +++
T Consensus 298 ~~l~~~~~~~---~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~ 347 (413)
T PRK15403 298 LALLIVGNLL---WP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGT 347 (413)
T ss_pred HHHHHHHHHH---cc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcH
Confidence 4444332110 01 12333566777888888888877775332 222221 577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~ 270 (549)
..+++......+..+++.+++++..+ +-.+.|.+..+...
T Consensus 348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 77777777777888888888888665 44566655444433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0018 Score=68.83 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHH
Q 008896 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (549)
Q Consensus 111 ~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (549)
..+-.....+..++++.+-|.+ |.|+.+.++...+....+.+.. .|...+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~ 105 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL 105 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence 4555566677888999999986 9999999999988887777655 366778
Q ss_pred HHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHH
Q 008896 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
+.+-.+.|+|.+..+.-...+.++-.+++. +.+..++
T Consensus 106 yfssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi 142 (461)
T KOG3098|consen 106 YFSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISI 142 (461)
T ss_pred HHHHHHhhhhHHheecccceehhhcCChhh------HHHHHHH
Confidence 899999999999999999999999888777 5555554
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.6e-05 Score=82.39 Aligned_cols=169 Identities=8% Similarity=-0.075 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 008896 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (549)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~ 158 (549)
++...+.-.+.+++--++ ++.+-.+...+.....-..+-++.-++.++|-+++ |+-+++.++++..++=.+.+...
T Consensus 381 v~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L-- 456 (618)
T KOG3762|consen 381 VVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYL-- 456 (618)
T ss_pred HHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHh--
Confidence 333333333455554444 45665555555444455566677778889999997 99999999998888877766665
Q ss_pred hcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHH-
Q 008896 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS- 237 (549)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~- 237 (549)
+|.|+.+..-++.|+-.+.++.++.+++++..|++- |.++-++....
T Consensus 457 --------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f 504 (618)
T KOG3762|consen 457 --------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIF 504 (618)
T ss_pred --------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHh
Confidence 678888999999999999999999999999999999 88888886554
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccc
Q 008896 238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 238 ~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (549)
-.+|-.+|.+|+|.+...+|-|..|.+.++..++.++++....+..
T Consensus 505 ~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 505 HGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL 550 (618)
T ss_pred cccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4788899999999999999999999988888777777666554433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.5e-05 Score=83.00 Aligned_cols=163 Identities=13% Similarity=0.122 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY 146 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~~~~i~~~l~ 146 (549)
.+|...+..++.....|++..+++.|+++..|++..++..+...+.++.+++.+++|+++||. +.+|..+.+.+.++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 678888999999999999999999999986789999999999999999999999999999993 36666666665554
Q ss_pred HH-HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 147 LA-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 147 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.+ |.+.+.... +......+.+....+.+...++......+....+.
T Consensus 354 ~~~g~~~l~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~----- 400 (495)
T KOG2533|consen 354 AIIGAISLLAAA----------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT----- 400 (495)
T ss_pred HHHHHHHHHhhc----------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence 44 434433321 11222222222333333344444555555554433
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHH
Q 008896 226 HLDRFFNFFYLSVTVGAIVAF-TLVVYIQMEHGWGSAFGAL 265 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p-~i~~~l~~~~gw~~~f~i~ 265 (549)
+|....+.+..+.+.+++++| +..+.....++|.+.|+..
T Consensus 401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 255555555555554444443 3445555567888888543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=81.83 Aligned_cols=165 Identities=13% Similarity=0.025 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
.-+.++.++.+.+..+..+.++...-..+.+.++..+.|.|+||+ +.-+.+....-+.++|.......
T Consensus 289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP----------- 356 (464)
T KOG3764|consen 289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIP----------- 356 (464)
T ss_pred hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhH-----------
Confidence 445677888888987776888887778888999999999999997 93333333333333342222221
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
.| .+...+++-+...+++.+...+......+...+.++..+-..-|...++...+..+|..+||.
T Consensus 357 ~~---------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~ 421 (464)
T KOG3764|consen 357 FA---------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPT 421 (464)
T ss_pred hh---------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhcccc
Confidence 22 456677777888888888887777777777776555321112577888889999999999999
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008896 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (549)
++|.+.+..|++|.-.+.++..++..-++.+.
T Consensus 422 ~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 422 FGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred ccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777766666555554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00031 Score=75.56 Aligned_cols=207 Identities=14% Similarity=-0.019 Sum_probs=139.9
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChH------HH----HHHHHHHHHHHHHHHhHHHHHhhh
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFA------DS----SNAVNNFLGISQASSVLGGFLADA 131 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~------~a----~~~~~~~~~~~~~~~l~~G~lsD~ 131 (549)
..+..++.++.+++++++..++++.+..+...|+.+ .+|-++. +. .+....+.+...+..++--++.++
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999998888888875 3543221 11 233444455555666677788888
Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHhhhhcc-cCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhh
Q 008896 132 YLG-RYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVS 209 (549)
Q Consensus 132 ~~G-R~~~~~i~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 209 (549)
+ | ||++..++.++..++++...+....+. ..+. +.+++ .- .+........++...+.|+..+.....-.
T Consensus 332 ~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~-----~~~~~--~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPf 402 (477)
T TIGR01301 332 W-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY-----DGDGE--SL-PPPTGIKASALIVFAILGIPLAITYSIPF 402 (477)
T ss_pred h-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc-----ccccc--cc-CcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence 6 8 578889998888888877765432110 0000 00000 00 00001135556666788999999999999
Q ss_pred hhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 210 ~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g--w~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
+++++..+++. .+.|..+++++.+..+...+..+..|.+.+..| -.+.+.+.++..+++.+..++..|+
T Consensus 403 al~s~~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 403 ALASIRSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHHHccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999988544 126999999999999999998888777655444 5567788888888877777665554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00036 Score=76.29 Aligned_cols=197 Identities=13% Similarity=0.051 Sum_probs=104.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+..++......+..++..++-+....+....+-+..+.+... .....+......++.+++.++-||+ |||+.++.+.+
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence 334454554444444444433333233333445566665432 4444445556667777779999997 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
.+.++.++++........... + ........+....+.......+..+....+.+|.+|.+.
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~---- 428 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPN---S------------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL---- 428 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCC---c------------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH----
Confidence 999999988876332111100 0 000112222222233334444445566678899999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HHHhhccccc
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM-LFFIGTPLYR 284 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~-~~~~~~~~~~ 284 (549)
|+.+.++-.....+...+-......+.+..++...|++......+..+ ..++..++.+
T Consensus 429 --r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 429 --RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred --HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 888887744443333322222222232332334455555544444444 3444444443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.5e-08 Score=103.09 Aligned_cols=188 Identities=14% Similarity=0.088 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 008896 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~ 150 (549)
....+....+..+..+....+..+++.+..+.++. ........+...++.+++.++.||+ |||++++++..+..+..
T Consensus 254 ~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~~ 330 (451)
T PF00083_consen 254 LLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAICS 330 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 33344444444333333334445566666777665 2222233355566777788999997 99999999988877766
Q ss_pred HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhH
Q 008896 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+.++.... ..+. .+...+...+............+..+....+.+|.||++. |.++
T Consensus 331 ~~~~~~~~---~~~~---------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~ 386 (451)
T PF00083_consen 331 LILGIIFF---LGVS---------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTG 386 (451)
T ss_pred cccccccc---cccc---------------cccccccccceeeeeccccccccccccccccccccccccc------cccc
Confidence 66541000 0000 0000111111111111222222445666788899999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~ 285 (549)
.++.+....+++.+++.+..++.+..+-...|++.+++..+..++.++..|+.+.
T Consensus 387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 387 IGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 9998888889999998888888777663445555555555555555555555443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.9e-05 Score=82.91 Aligned_cols=136 Identities=10% Similarity=-0.152 Sum_probs=105.6
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccccccc
Q 008896 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (549)
Q Consensus 97 ~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (549)
.+.+|+++...+.......++..++..+.+++.+|+ +.|+++.++.++..++.+...+...-+..... .
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g---i------- 348 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG---I------- 348 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccC---C-------
Confidence 457899999999999999999999999999999886 99999999998888877554322110000000 0
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~ 256 (549)
.+...+....++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.+..
T Consensus 349 --------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 349 --------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred --------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 112233444567788888888888999999999998 999999999999999999999999999887
Q ss_pred c
Q 008896 257 G 257 (549)
Q Consensus 257 g 257 (549)
|
T Consensus 415 g 415 (468)
T TIGR00788 415 G 415 (468)
T ss_pred C
Confidence 7
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0016 Score=71.43 Aligned_cols=154 Identities=11% Similarity=0.015 Sum_probs=105.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH-
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA- 140 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~- 140 (549)
.+++|.+...+++.++..+.+|.+....|.+....++.+.. ..++....+..+..++.++.|++.-++ ||.|-.+
T Consensus 306 f~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li 384 (599)
T PF06609_consen 306 FKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLI 384 (599)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHH
Confidence 44456777778888899888998887778887777766653 456666777778888888889999876 8766554
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC
Q 008896 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 141 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
++.++++++...++.. .+ .|....+...++.|+|.|...........-..|++.
T Consensus 385 ~~~~~~ta~~Gama~~------~~--------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ 438 (599)
T PF06609_consen 385 FGSVLMTAFCGAMAAV------RP--------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED 438 (599)
T ss_pred HHHHHHHHHHHHHHHc------cC--------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH
Confidence 5555555544444332 11 122334555677888888876666665555666666
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008896 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (549)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~ 251 (549)
.+.+.++......+|+.+|..+-.-
T Consensus 439 ------ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 439 ------IGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred ------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7888888777777777777666533
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=7e-05 Score=77.84 Aligned_cols=180 Identities=15% Similarity=0.053 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH--------HHHHHH-HHHHHHHhHHHHHhhhccchHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNFL-GISQASSVLGGFLADAYLGRYWTI 139 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~--------~~~~~~-~~~~~~~l~~G~lsD~~~GR~~~~ 139 (549)
+......+.-|+.-+++|+...+.. -+-+.+++.+.+... ...+.. .++..+..++..+.|++ |||++-
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s-~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQS-VIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHH-HHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 4555556666777777877655533 333445554333222 111222 22333666777889987 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHH-HHHHHhccCcchhhhhhhcccCCC
Q 008896 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 140 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
+-+.+++.+..+.++..-.. . .+...+++.- +..-++.-++......+-+|.||+
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~--~----------------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQ--L----------------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCccc--c----------------------cccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence 99999888887776654110 0 1111122221 222345556666677777999999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~-----~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
+. |+.+-++...+.-+|+.++.....++.+ ..|.+++|++.+.+..+..++.++..
T Consensus 438 rv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 438 RV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred HH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence 99 9999999999999999999999999998 78899999999988888877765543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00033 Score=55.55 Aligned_cols=67 Identities=18% Similarity=-0.012 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
..++...+.-.+.++++.|++ +.|++..+.+.+.++..+...+++++.|+++||+ ||++.++....+
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 344444445456788888886 5999999999999999999999999999999997 888877665543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0017 Score=72.76 Aligned_cols=178 Identities=11% Similarity=0.062 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccc--hHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~lsD~~~G--R~~~~~i~~~l~ 146 (549)
.++...+..++....++++.+++|.|+++.+|++..+++++.....+ +..++.+++|+++||+ + .|+++.+++++.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~ 409 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS 409 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence 56777788888899999999999999999999999999988877665 6788999999999997 7 456777777666
Q ss_pred HHHHHHHHHhhh-------hcccCC---------CCC-ccccccc-c---------------------------------
Q 008896 147 LAGLTGITLCAT-------MKVFMP---------NQD-NCDRISQ-L--------------------------------- 175 (549)
Q Consensus 147 ~~g~~~~~~~~~-------~~~~~~---------~~~-~~~~~~~-~--------------------------------- 175 (549)
+++.++...... +..... ... .|+..=+ +
T Consensus 410 ~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~ 489 (633)
T TIGR00805 410 TLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNM 489 (633)
T ss_pred HHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcc
Confidence 666544221000 000000 000 1210000 0
Q ss_pred -----------------cCCCCCcchhh-HHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHH-
Q 008896 176 -----------------LGSCEPAKSWQ-MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL- 236 (549)
Q Consensus 176 -----------------~~~~~~~~~~~-~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~- 236 (549)
...|+ ++..+ ...+++..++..+..+.........+-...|+++ |..+.++..+
T Consensus 490 ~y~~CsCi~~~~~~~a~~g~C~-~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~ 562 (633)
T TIGR00805 490 VYTNCSCVQTPGNSSAKKGLCN-PPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLC 562 (633)
T ss_pred eecccccccCCCCCCCcCCCCC-cccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHH
Confidence 00122 12222 3445555555555555555555666778889888 9999999554
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 008896 237 SVTVGAIVAFTLVVYIQME 255 (549)
Q Consensus 237 ~~~ig~~i~p~i~~~l~~~ 255 (549)
...+|..-+|++-|++.|.
T Consensus 563 ~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 563 MRVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHHhcCCChhHHHhhhhhc
Confidence 5578889999999999874
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.054 Score=56.81 Aligned_cols=156 Identities=9% Similarity=-0.004 Sum_probs=101.3
Q ss_pred HHHHHHHHHHh-cCCChHHHHH-HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 008896 89 SVNMVTFMFYV-MHKSFADSSN-AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (549)
Q Consensus 89 ~~~l~~yl~~~-l~~s~~~a~~-~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~ 166 (549)
-+++.+|+++. .|++..+... +.=++.-.....-++...++|.+ |-|++++++.+..++...++-+.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~---------- 91 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG---------- 91 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH----------
Confidence 35788999887 8999888763 33333344445556678899965 99999988888777776666554
Q ss_pred CcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008896 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p 246 (549)
.++..+-+..++.|++.+. ..+..+++=-..|+++ =-+..++...+..+|-.++.
T Consensus 92 ------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~ 146 (412)
T PF01770_consen 92 ------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISS 146 (412)
T ss_pred ------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888887665 3344444444444433 23334455555666666666
Q ss_pred HHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 247 TLVVYIQM--EHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 247 ~i~~~l~~--~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
.++..+.. ..++...+++......+++++.++..
T Consensus 147 ~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 147 LLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66665544 34567677777777777776655543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.14 Score=54.36 Aligned_cols=192 Identities=9% Similarity=-0.132 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.+.+..++.+++.=..--..+.|+.+-+.-+-.-.+..-..-.+..++..+.-|..-||. -|.+++..+.++.-+.
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLS 81 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHH
Confidence 344555666666666654444566777765543433333322233344455555667788987 8999988887775554
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCC--cchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEP--AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
.+..+.........+. .. ........+.+..++..+..-+......+.==|+...=..++...+
T Consensus 82 v~~s~~~~~~l~~~~~--------------~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~L 147 (432)
T PF06963_consen 82 VAASCALFLLLLSYPS--------------SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGAL 147 (432)
T ss_pred HHHHHHHHHHHHhCCc--------------cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhH
Confidence 4443322111000000 00 0011222222222222222222222222222344331111111224
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~ 276 (549)
.+..+...-.=.+--.++|++.|.+....+...+.++.++..++++.+=
T Consensus 148 a~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vE 196 (432)
T PF06963_consen 148 ARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVE 196 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 4444444333456678899999999888888888777777766666543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.23 Score=53.47 Aligned_cols=165 Identities=10% Similarity=-0.009 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHHHHH-HhHHHHHhhhccchHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF-----ADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIAI 141 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~-----~~a~~~~~~~~~~~~~~-~l~~G~lsD~~~GR~~~~~i 141 (549)
+++++...+.-|+..+.++.+. -+.+.+..+. ....++-+...+...+. .++-+++++|+ +|++++.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 4566666677777666665333 3456665532 33444444443433333 67789999997 99999988
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCc---chh---------hHHHHHHHHHHHHHhccCcch-hh
Q 008896 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA---KSW---------QMLYLYTVLYITGFGAAGIRP-CV 208 (549)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~l~g~g~g~~~~-~~ 208 (549)
....+.+...++++... |.. +..|| ...|... ... +.+...+.-+...+......+ ..
T Consensus 80 ~~~~F~~~f~lF~~vl~-----p~~---~~~~p-~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lF 150 (472)
T TIGR00769 80 VISPFLGFFALFAFVIY-----PLS---DLLHP-TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLF 150 (472)
T ss_pred HHHHHHHHHHHHHHHHh-----cch---hhcCC-cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777665422 110 00111 1111000 000 011111112223344444444 67
Q ss_pred hhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 209 ~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
.++..|.++.++ -.|+++++..+.|+|..+|+.+..++.
T Consensus 151 W~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 151 WGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888 789999999999999999999998876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0081 Score=64.02 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 008896 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (549)
Q Consensus 87 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~ 155 (549)
.+.+.+++|. +++|+++.+.+.+...--+..+++++++|++|||+=-||+.++.+.+...+..+++.+
T Consensus 29 ~l~pll~vy~-kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 29 SLFPLLAVYF-KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred ccchHHHHHH-HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence 3666777776 5799999999999999999999999999999999844555555555555555555544
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0047 Score=56.05 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHH
Q 008896 109 NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188 (549)
Q Consensus 109 ~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (549)
.-+++......+..++...+-+++ |.|+++.++.+.+.+-...... .+..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~~ 90 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-----------------------------PNSY 90 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-----------------------------hhHH
Confidence 444555555666777778888876 9999999999888766554432 3566
Q ss_pred HHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008896 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 189 ~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~ 250 (549)
.++.+-.+.|++.+..+.....++.+..++++ |++..+++......+..+|.++.-
T Consensus 91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 91 TLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999887766 777777755555566665555443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0025 Score=70.26 Aligned_cols=176 Identities=11% Similarity=0.013 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHH-HHHHHHHHHHHHHHHHhHHHHHhhhccchHH--------
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKS-FAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYW-------- 137 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-~~s-~~~-a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~-------- 137 (549)
..+|.++...++..-+-..+..| .-++.+.+ |.+ +.+ ..+.++++.++.++|.+.+|.++... -||+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N-~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~prt 430 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFN-ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRVPIT 430 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeec-HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-Hhhccccccchh
Confidence 37788888888876666555555 46777888 773 332 23378999999999999999998322 3332
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccC
Q 008896 138 -TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (549)
Q Consensus 138 -~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (549)
.+.+..+ +.++.+++++. .| ...++++-++.|++.|...++.....+|+|
T Consensus 431 ~~l~~~~~-~~~~~lll~~~------~p----------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selF 481 (591)
T PTZ00207 431 IALFIPSV-CIITMLTLFLT------LP----------------------KAALPLPYFIAAFANGFMAATIALVTRTIF 481 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHH------CC----------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 2333333 44555555543 01 146889999999999999999999999999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhc-------------cchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~ig~~i~-p~i~~~l~~~-------------~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
. ++ -+.-+++...+..+|..+= -.+.|.+.|+ ..++.+|.+.+...+++.++.+..+-+
T Consensus 482 g-k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R 554 (591)
T PTZ00207 482 A-KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ 554 (591)
T ss_pred c-cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence 9 77 7888888888888887654 4456666532 237888888877777777665554433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00026 Score=73.63 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHHH-HHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTT 144 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~---~GR~~~~~-i~~~ 144 (549)
+.++.+..+.+...+++-.=.+++++|+. .+|.+..-.+.+-..--+...+.+++.|..|||. |||||-++ ....
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 56666666666667776555577888874 7899888777776666777788889999999986 68776555 4455
Q ss_pred HHHHHHHHHHHhhhhccc-CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhh
Q 008896 145 IYLAGLTGITLCATMKVF-MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
...+++++...+..+... .+. . -.+........++++..+.=+..-..+...-++.+|+...++
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~----------~--~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~--- 175 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDN----------E--RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA--- 175 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCC----------c--ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh---
Confidence 566677766665433211 111 0 111333556677777777778888888899999999998766
Q ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHH
Q 008896 224 KTHLDR-FFNFFYLSVTVGAIVAFTLVVY 251 (549)
Q Consensus 224 ~~~r~~-~~~~~~~~~~ig~~i~p~i~~~ 251 (549)
+.+ +.+++.+...+|+.+|...++|
T Consensus 176 ---~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 176 ---KKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred ---hhhccchhHHHHHHhcceeeeecccc
Confidence 333 8888888889999888777764
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.029 Score=61.31 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH-HHHHHHHHHH-HHHHHHHhhhhcccCCCCCcc
Q 008896 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYLA-GLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 92 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~-~~i~~~l~~~-g~~~~~~~~~~~~~~~~~~~~ 169 (549)
..-.+...+|.+..+.+.++++|.++..+|..++++++++. -|+.. +.+...+... ...++...... . .
T Consensus 37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~~~~---~-~---- 107 (521)
T PRK03612 37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAAFAF---Q-G---- 107 (521)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-H----
Confidence 34455556888888889999999999999999999887543 22221 1111111111 11111111000 0 0
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
.....++...++.++..|+..|....+..+... ++ -++..+..|....+|+++|.++.
T Consensus 108 ---------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l~~ 165 (521)
T PRK03612 108 ---------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGLAF 165 (521)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHHHH
Confidence 111222333455677777777777666654322 12 34556777888889999999998
Q ss_pred HHHhh-ccch-HHHHHHHHHHHHHHHHHH
Q 008896 250 VYIQM-EHGW-GSAFGALAIAMGISNMLF 276 (549)
Q Consensus 250 ~~l~~-~~gw-~~~f~i~~~~~~i~~~~~ 276 (549)
+++.- ..|- +..+.+..+..+++++++
T Consensus 166 ~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 166 PFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 87654 5664 344444443344443333
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.016 Score=62.65 Aligned_cols=156 Identities=11% Similarity=-0.034 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH------HH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVM-----HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY------WT 138 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-----~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~------~~ 138 (549)
....+++...+-...+.-..+.+..|..+.. |++ -.+++..++-.+...+..++.+++=.+. +|| +.
T Consensus 269 ~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~ 346 (493)
T PRK15462 269 LIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWG 346 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHH
Confidence 4444444444444455445556666665532 221 1233434443333333344444443333 221 11
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCC
Q 008896 139 -IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (549)
Q Consensus 139 -~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (549)
+.+++++..++.+.+.++.....- ....+..++++..++.++|+-+..|...+++++..|
T Consensus 347 Kfa~g~~~~g~~f~~l~~~~~~~~~-------------------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP 407 (493)
T PRK15462 347 KFALGLGLMSAGFCILTLSARWSAM-------------------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEI 407 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-------------------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhCh
Confidence 667777777787777665331110 011466778888889999999999999999999999
Q ss_pred CCChhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHH
Q 008896 218 ERSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVYI 252 (549)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~-~~ig~~i~p~i~~~l 252 (549)
++- |+..++.+.+. ..+|..++..+++..
T Consensus 408 ~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 408 PGV------TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998 99999998774 367777776666655
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.011 Score=60.51 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH-HHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIY 146 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~-~i~~~l~ 146 (549)
...+.++....+..+..|....+.+.++ .+.+|+++.|.+-+.+.-.++..+.++.-.+..|+..|--+.. ..++.+.
T Consensus 260 i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~ 339 (451)
T KOG2615|consen 260 ISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLI 339 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHH
Confidence 3566666666555555556555656666 5679999999998888888888888888888888874433333 2333322
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.-..+++... .....++++..+..+..+...++...++....|.++
T Consensus 340 vP~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------ 385 (451)
T KOG2615|consen 340 VPAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------ 385 (451)
T ss_pred HHHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------
Confidence 2233333332 334668888889999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 227 r~~~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
||...++......++-++||.++|.+..
T Consensus 386 rG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 386 RGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 9999999999999999999999987754
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.012 Score=47.39 Aligned_cols=66 Identities=8% Similarity=-0.072 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~ 156 (549)
+.+.+.+.++.++|.++++++.+...+++.+|.+...++.++. .+++.+..+.++..+.++.+++.
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577888999999999999999999999999999999999985 78889999999888888888875
|
Note that many members are hypothetical proteins. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.067 Score=58.51 Aligned_cols=126 Identities=9% Similarity=0.019 Sum_probs=83.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 008896 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (549)
Q Consensus 94 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (549)
.+....+|.+.......... .....-...+.+-|+. |||.....+..+..++.+..++....
T Consensus 342 ~~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~~~-------------- 403 (521)
T KOG0255|consen 342 SLNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLPDD-------------- 403 (521)
T ss_pred hhhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhhcc--------------
Confidence 33344455554433322222 4444445557889987 99999999999999988888775220
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
.......+...+..++.+....+...+.+|++|+.. |..+.+.......+|..++|.+.....
T Consensus 404 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~~~~~ 466 (521)
T KOG0255|consen 404 -----------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFPLLLR 466 (521)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 110122222233334444445566888899999988 999999999999999999998876554
Q ss_pred h
Q 008896 254 M 254 (549)
Q Consensus 254 ~ 254 (549)
.
T Consensus 467 ~ 467 (521)
T KOG0255|consen 467 Q 467 (521)
T ss_pred h
Confidence 4
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0091 Score=62.41 Aligned_cols=185 Identities=13% Similarity=0.027 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
.+..+.+...+....+|++.+.+-.- ...-|.+...++.+..+-.++.+++.++.|.++||.-.-|.++++......++
T Consensus 267 ~F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 267 QFIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34444444445555555555443322 23567777888999999999999999999999999733344555555555555
Q ss_pred H-HHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 150 L-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 150 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
. .+.... . .+ ...+.++....+.|++..+..|...-+..|..-+..+ +
T Consensus 346 ~~~l~~~t-~----~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------~ 394 (480)
T KOG2563|consen 346 TLMLLTCT-L----FL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------G 394 (480)
T ss_pred HHHHHHhh-c----cC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC------c
Confidence 3 222221 1 01 1234455556678888888888888888877554442 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHH-HHHHHHHHHHHHHHHHHhhccccccc
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGS-AFGALAIAMGISNMLFFIGTPLYRHR 286 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~g---w~~-~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (549)
...++......+-+.+=.++.+...+..+ |.+ .-+.......+.+++..+.++.|+..
T Consensus 395 tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 395 TSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred ccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 44455555555555555556666665554 333 22333444444555555556655443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.71 Score=51.93 Aligned_cols=249 Identities=12% Similarity=-0.023 Sum_probs=156.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCC
Q 008896 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179 (549)
Q Consensus 100 l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (549)
.+...........++....++.+++....+|..-|+...+..-...++++.+...+.+..+ . |
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~-~--------------- 77 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-I-P--------------- 77 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-C-c---------------
Confidence 3444556677889999999999999999999876777888888888888888777664311 0 1
Q ss_pred CCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-h
Q 008896 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-W 258 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w 258 (549)
.........+..+.+.++.++..++.+.+.+++++..+ ...+.+..++|++..+.+.. |.+++..+..... +
T Consensus 78 ---~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~ 150 (654)
T TIGR00926 78 ---SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGD 150 (654)
T ss_pred ---ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 01223445667778889999999999999999998644 44455789999999887765 5666766665443 2
Q ss_pred HH------HHH-HHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCcccccC
Q 008896 259 GS------AFG-ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKG 331 (549)
Q Consensus 259 ~~------~f~-i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~ 331 (549)
.. .+. ..++.+++.++.++.....++..++.+.+...+.++.....+.++. +.
T Consensus 151 ~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~------~~-------------- 210 (654)
T TIGR00926 151 VGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK------RF-------------- 210 (654)
T ss_pred hcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH------hh--------------
Confidence 21 132 4445555566666665555555454433333333333222221110 00
Q ss_pred CcccccCCccchhhHhhhhhccccCCCCCCccc--CchhHHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhhhccC
Q 008896 332 SGKIAHTDDFRCLDKAALELKEDVINPSPWKLC--TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409 (549)
Q Consensus 332 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~--~~~~ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~~~~~ 409 (549)
. . .+. .....|..+ ....+++++.+.+++.++...+.+++.+.++......+...++..
T Consensus 211 ----~-~-----~~~---------~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m 271 (654)
T TIGR00926 211 ----S-T-----RSE---------HWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRM 271 (654)
T ss_pred ----c-c-----CCc---------ccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Confidence 0 0 000 000122222 223345678888999998888888888888777777777777754
Q ss_pred CC
Q 008896 410 MG 411 (549)
Q Consensus 410 ~~ 411 (549)
.+
T Consensus 272 ~~ 273 (654)
T TIGR00926 272 DG 273 (654)
T ss_pred cC
Confidence 33
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.00049 Score=75.42 Aligned_cols=187 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhc-cchHHHHH
Q 008896 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIA 140 (549)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~lsD~~-~GR~~~~~ 140 (549)
...+++ ......+...++.+...++.+++|-|++.+|+++.++++++.....+ +.++|.++||++..|+ ++.|.++.
T Consensus 300 ~Ll~Np-~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~ 378 (539)
T PF03137_consen 300 RLLTNP-VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAK 378 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHH
Confidence 333343 56677778888888888999999999999999999999988766554 7889999999999986 34455555
Q ss_pred HHHHHHHHHHHH---HHHh----hhhcccCCCC-------------Cccccccc------ccCCCCCcchhhHHHHHHHH
Q 008896 141 IFTTIYLAGLTG---ITLC----ATMKVFMPNQ-------------DNCDRISQ------LLGSCEPAKSWQMLYLYTVL 194 (549)
Q Consensus 141 i~~~l~~~g~~~---~~~~----~~~~~~~~~~-------------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 194 (549)
...+..++..+. ..+. ..+..+..++ ..|+.... ..+.|+.+-..+...+++..
T Consensus 379 ~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~ 458 (539)
T PF03137_consen 379 FCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILL 458 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHH
Confidence 544444443333 1110 0111111111 01111000 12335555233455566666
Q ss_pred HHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhcc
Q 008896 195 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 195 ~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~i~p~i~~~l~~~~ 256 (549)
++..+..+..........-...++++ |..+.++.. +...+|..-||++-|++.|..
T Consensus 459 ~~~~~~~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 459 FILSFFTFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 66666666665566666668888888 999999944 456788899999999998865
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.013 Score=62.91 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 008896 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (549)
.+..|+...++++..+.+...+.......++.++..++--+.+|-++++.+++....+.....+++
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------------- 328 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------------- 328 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--------------
Confidence 446788889999999999888888888888888888544445698889999999999999988887
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008896 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~ 250 (549)
++.++++...++.++ .+...+...++.+-+.++++ +|+.+++......+.+.++|.+-+
T Consensus 329 --------------~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 329 --------------TETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYG 387 (463)
T ss_pred --------------ccchhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHH
Confidence 456666766655444 56678999999999999999 999999999999999999998877
Q ss_pred HHhh
Q 008896 251 YIQM 254 (549)
Q Consensus 251 ~l~~ 254 (549)
.+..
T Consensus 388 ~i~~ 391 (463)
T KOG2816|consen 388 NIFA 391 (463)
T ss_pred HHHH
Confidence 6643
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.21 Score=51.34 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=90.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH--HHHHhHHHHHhh-----hccchHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGIS--QASSVLGGFLAD-----AYLGRYW 137 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~--~~~~l~~G~lsD-----~~~GR~~ 137 (549)
++-.+.+..+++..++..+-. |+.. .++++-+.-|.|-++.+. |...+ +-.-++++++-| |+ ||||
T Consensus 27 ~~d~~~illLl~LYllQGiP~-GL~~-~iP~lL~ak~vSyt~~a~----fS~ay~P~sLKllWaPiVDs~y~k~~-Grrk 99 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPL-GLIG-AIPLLLQAKGVSYTSQAI----FSFAYWPFSLKLLWAPIVDSVYSKRF-GRRK 99 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCch-hHhh-hhHHHhcCCCcchhhhhh----hhhhhhHHHHHHHHHhhhHHHHHHhh-cccc
Confidence 333456677777777766655 6666 556666667777655443 22222 233468888999 75 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCC
Q 008896 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (549)
Q Consensus 138 ~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (549)
.-++-. -+.+|.++..++........ .....++...+....+++-+..+.---++-+..-.+..
T Consensus 100 sWvvp~-q~llG~~mllLs~~v~~~~g---------------~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs 163 (510)
T KOG3574|consen 100 SWVVPC-QYLLGLFMLLLSYLVDRGLG---------------GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLS 163 (510)
T ss_pred ceeeeh-HHHHHHHHHHHhhCCCcccc---------------cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcC
Confidence 766543 34455555555532211110 11122344444445556666666666666666667777
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008896 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~ 249 (549)
+++ .+-+..-...+.+.|..++..+.
T Consensus 164 ~e~------lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 164 REN------LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred Hhh------cCchhHHHHHHHhhhHHhhccee
Confidence 776 66666666667777777766543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.061 Score=46.32 Aligned_cols=67 Identities=13% Similarity=0.263 Sum_probs=50.6
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHH
Q 008896 437 GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFC 516 (549)
Q Consensus 437 ~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~ 516 (549)
.......+..|++.|+.++++......+|..+++.+.+.+.+..+ +...|++.+.++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG------------------WRAPFLFLAILALAAFI 132 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc------------------hHHHHHHHHHHHHHHHH
Confidence 344556788999999999999999999999999999988764222 35667777777666666
Q ss_pred HHHhh
Q 008896 517 AFLYS 521 (549)
Q Consensus 517 ~~~~~ 521 (549)
..+++
T Consensus 133 ~~~~~ 137 (141)
T TIGR00880 133 LLAFL 137 (141)
T ss_pred HHhhc
Confidence 55544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.95 E-value=2.7 Score=44.21 Aligned_cols=125 Identities=9% Similarity=0.029 Sum_probs=70.2
Q ss_pred HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHH
Q 008896 114 FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTV 193 (549)
Q Consensus 114 ~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (549)
-.+-..+.-+++-+..+|+ --+.=+.++.++.++|+++.+++ .+.+.-+++
T Consensus 68 di~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~----------------------------~~v~~~l~G 118 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFS----------------------------PSVWVRLLG 118 (402)
T ss_pred HHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeec----------------------------cchhHHHHH
Confidence 3344455555666777775 32222344455667777776664 356666778
Q ss_pred HHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHH
Q 008896 194 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGI 271 (549)
Q Consensus 194 ~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g--w~~~f~i~~~~~~i 271 (549)
..+.+++.|.-....-++.+ .+++ ...+.|..+...++.+|+..=..+.. .| .|..+.+.....++
T Consensus 119 v~las~ssg~GE~tfL~lt~-~y~~----------~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~ 186 (402)
T PF02487_consen 119 VVLASLSSGLGEVTFLSLTH-FYGK----------SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAI 186 (402)
T ss_pred HHHHhhhhhhhHHHHHHHHH-hcCc----------cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHH
Confidence 88888887776666555533 3332 12344555666666666655444444 44 46666665555444
Q ss_pred HHHHHHhh
Q 008896 272 SNMLFFIG 279 (549)
Q Consensus 272 ~~~~~~~~ 279 (549)
..+.+++.
T Consensus 187 ~~~~~f~~ 194 (402)
T PF02487_consen 187 FLLSYFFL 194 (402)
T ss_pred HHHHHHHh
Confidence 44444443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.007 Score=58.90 Aligned_cols=156 Identities=16% Similarity=0.084 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 008896 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (549)
.+...|+-+.+++...+.+.+...-.+..++...+.|-|+|+. |||+.....+ +.++++.+.-..
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtyc----itYiLsCiTKhS---------- 121 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYC----ITYILSCITKHS---------- 121 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeeh----HHHHHHHHhhcC----------
Confidence 3445677788899888888665555555666667889999997 9999765444 445555554210
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhh-hcccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHHH
Q 008896 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF-GADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFT 247 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~ad~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~i~p~ 247 (549)
++.-.++++|++-|+.++.......+. ++|.-+.+.= +.+=....|+- ..+++.+-+.++.+
T Consensus 122 ---------------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~F-eqqWls~TFskA~ffgNglvAiiaGl 185 (454)
T KOG4332|consen 122 ---------------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGF-EQQWLSVTFSKAVFFGNGLVAIIAGL 185 (454)
T ss_pred ---------------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCC-hHhhhhHHHHHHHHhhccHHHHHHHH
Confidence 345568899999999988877666553 4454322220 00001111111 12333444555555
Q ss_pred HHHHHhhccc--hHHHHHHHHHHHHHHHHHH
Q 008896 248 LVVYIQMEHG--WGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 248 i~~~l~~~~g--w~~~f~i~~~~~~i~~~~~ 276 (549)
.+-.+.+..+ --.+|-..+....++..+.
T Consensus 186 fgn~lvd~~slGPVAPFdAAacfLaigmAvi 216 (454)
T KOG4332|consen 186 FGNLLVDTFSLGPVAPFDAAACFLAIGMAVI 216 (454)
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 5666666554 4455654444444444433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.16 Score=54.10 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------Hhhccch
Q 008896 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY------IQMEHGW 258 (549)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~------l~~~~gw 258 (549)
.++++++.+.+++++|.-+..|...++++...|++- .+..++.|.+....|..++..+.+. ..+....
T Consensus 392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~ 465 (498)
T COG3104 392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIE 465 (498)
T ss_pred cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhh
Confidence 567888999999999999999999999999999877 8888999999988888888777662 2233345
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008896 259 GSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 259 ~~~f~i~~~~~~i~~~~~~ 277 (549)
...|+..+....+..+..+
T Consensus 466 ~~~F~~~g~v~i~~~~~~~ 484 (498)
T COG3104 466 GRVFGTIGVVAIVIGILLL 484 (498)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 5667666655444444333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.0062 Score=63.83 Aligned_cols=78 Identities=18% Similarity=0.111 Sum_probs=64.1
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHH
Q 008896 437 GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFC 516 (549)
Q Consensus 437 ~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n~~~~~~~f~~~a~~~~~~~~ 516 (549)
...+++.+.+|...||++.++++++.-+|+.+|-.....+.+.++ .| .+.|++.++++++..+
T Consensus 141 ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~W----------r~af~~~avl~vi~~~ 203 (493)
T KOG1330|consen 141 IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------WW----------RWAFRGSAVLGVIVGL 203 (493)
T ss_pred cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------ce----------EEEEEeehHHHHHHHH
Confidence 455677899999999999999999999999999988888876554 15 6789999999999988
Q ss_pred HHHhhhhcccccccc
Q 008896 517 AFLYSAYRYKYRSEQ 531 (549)
Q Consensus 517 ~~~~~~~~~~~~~~~ 531 (549)
+..++.++-.++.++
T Consensus 204 L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 204 LVFLFVREPERGARD 218 (493)
T ss_pred HHHhhccCccccccc
Confidence 888887766654443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.68 Score=49.27 Aligned_cols=136 Identities=10% Similarity=-0.087 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008896 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (549)
.-..+..|+... |+++...+..=+.-.+....+.++..++-+|+ |-.|+=+++..+..+...++..+...+.. |
T Consensus 277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~-~--- 350 (432)
T PF06963_consen 277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGS-P--- 350 (432)
T ss_pred CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCC-C---
Confidence 345577898876 99999999888888888999999999999997 99999999988877776666554322110 0
Q ss_pred cccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008896 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~ 247 (549)
....+...++.+..+.=+|-=++--+..-++-|..|+++ |+...+.-+...++.-.+...
T Consensus 351 --------------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 351 --------------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred --------------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHH
Confidence 012455666666666667777777888888889999888 999999977777777766554
Q ss_pred HH
Q 008896 248 LV 249 (549)
Q Consensus 248 i~ 249 (549)
++
T Consensus 411 ~~ 412 (432)
T PF06963_consen 411 LT 412 (432)
T ss_pred HH
Confidence 43
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.39 Score=53.84 Aligned_cols=183 Identities=13% Similarity=0.094 Sum_probs=113.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHhHHHHHhhhc-cchHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAY-LGRYWTIAIF 142 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~-~~~~~~~~l~~G~lsD~~-~GR~~~~~i~ 142 (549)
..++ ......+...++.+.+.++.+++|-|+.++++.+...+..+.... ..+.++|.++||++.-|+ +.-|.+..+.
T Consensus 389 l~N~-if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~ 467 (735)
T KOG3626|consen 389 LSNP-IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFV 467 (735)
T ss_pred hcCc-hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHH
Confidence 3444 566778888999999999999999999999999999999887554 456788999999999886 3344444444
Q ss_pred HHHHHHHHHH---HHHh----hhh----------cccCCCC---Cccc---------------cc---------------
Q 008896 143 TTIYLAGLTG---ITLC----ATM----------KVFMPNQ---DNCD---------------RI--------------- 172 (549)
Q Consensus 143 ~~l~~~g~~~---~~~~----~~~----------~~~~~~~---~~~~---------------~~--------------- 172 (549)
++..++.++. +.+. ... +....++ ..|+ .+
T Consensus 468 ~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~ 547 (735)
T KOG3626|consen 468 IVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTES 547 (735)
T ss_pred HHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCccc
Confidence 4333333322 2110 000 0000000 0011 00
Q ss_pred cc-c-----------------------cCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 173 SQ-L-----------------------LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 173 ~~-~-----------------------~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
.. + .+.|+.+.......|++..++..+..+........++-...++++ |.
T Consensus 548 ~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks 621 (735)
T KOG3626|consen 548 SGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KS 621 (735)
T ss_pred ccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------ch
Confidence 00 0 001222223333444444444445445555566667778888888 99
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 008896 229 RFFNF-FYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 229 ~~~~~-~~~~~~ig~~i~p~i~~~l~~ 254 (549)
.++++ +.+...+|..-+|++-|++.|
T Consensus 622 ~AlG~~~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 622 FALGFQWMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred hhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence 99999 444567888999999999976
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.2 Score=47.60 Aligned_cols=116 Identities=20% Similarity=0.104 Sum_probs=74.2
Q ss_pred HHHHHHHhHHHHHhhhc--cchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHH
Q 008896 116 GISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTV 193 (549)
Q Consensus 116 ~~~~~~~l~~G~lsD~~--~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (549)
.+..++.++.+.+++|. +||++++.++..++.++.++.-+... ...|- + ++..-+....++.....+.
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p--~dap~----~----~t~~~~~~~~~~~~~~~ii 359 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFP--NDAPL----R----PTDSPPLLFTPSYYLALII 359 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcccc--ccCCC----C----CCcccccccccchhHHHHH
Confidence 34455556666777554 59999999999999998887766521 11100 0 0111122222344455566
Q ss_pred HHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008896 194 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (549)
Q Consensus 194 ~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i 248 (549)
-+++|++-+........++++..| ++ |..+++++-+-..++..++-+.
T Consensus 360 ~~l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 360 GFLLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhh
Confidence 678999999999999999999995 44 6778887666555555544333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.06 E-value=1 Score=47.36 Aligned_cols=63 Identities=8% Similarity=0.060 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008896 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~ 253 (549)
++.+..++..+..|+..|+.+.+....+.|..++++ |.-.++...++-.+|..++.+++-++.
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356777777888999999999999999999988877 999999988888888888887776554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=93.74 E-value=9.4 Score=41.19 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=35.9
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 008896 438 LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 477 (549)
Q Consensus 438 ~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~l~~~v~ 477 (549)
...+++.-+|++.|++++|++.....+|.++++.+.+.+.
T Consensus 135 ~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 135 YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888899999999999999999999999999999843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.81 E-value=4.4 Score=39.79 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 231 ~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
.+....+.++|..+| ++.|.+.|+.|-+....+.++...++....++
T Consensus 39 l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l 85 (250)
T PF06813_consen 39 LNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWL 85 (250)
T ss_pred HHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 344555677888776 66788999999777777777777766655443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.54 E-value=23 Score=38.16 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=100.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s---~~~a~~~~~~~~~-~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
-|+.++.+.+..++..+.++. .--+.+.+.++ +.....+-+.... ...+..++-+++.+++ -|.+++.+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~-----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNL-----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence 356677777777776666532 23345555554 3333444444444 5667778889999986 999999888
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCC-----CCc-ch-h-----hHHHHHHHHHHHH-HhccCcch-hh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-----EPA-KS-W-----QMLYLYTVLYITG-FGAAGIRP-CV 208 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~-~-----~~~~~~~~~~l~g-~g~g~~~~-~~ 208 (549)
...+....+++++... |. |+.-|||.+.- ..| .- . +.|. ....++.+ +-...... .-
T Consensus 99 ~~~F~~fF~LFa~Vi~-----P~---~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws-~s~~Yi~aELWgslV~S~lF 169 (509)
T COG3202 99 LGFFLGFFALFAFVIY-----PY---KDILHPDPEFSRDLFADLPMFLKWFILIVGEWS-YSLFYIMAELWGSLVLSLLF 169 (509)
T ss_pred HHHHHHHHHHHHHHHh-----cc---ccccCCCHHHHHHHHhhCCccceeeeEeecchH-HHHHHHHHHHHHHHHHHHHH
Confidence 8888888888876533 21 22223331110 011 00 0 0011 11112211 22222222 44
Q ss_pred hhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 209 ~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
..+.-|++..++ -.|++++++.+.|++..++..+..++..
T Consensus 170 w~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 170 WQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667788888877 7899999999999999999999988875
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=90.24 E-value=30 Score=37.38 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=51.5
Q ss_pred HHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 008896 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (549)
Q Consensus 196 l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i 271 (549)
+.++.........-..+.+++|++++ |..+++-++...++...+..++++.+.+..||..+..+.-+..++
T Consensus 275 ~y~~~~nlve~~~k~~v~~~~p~~~~-----~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 275 AYGISINLVEVTWKSKLKAQYPSPNE-----YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455555556666777888876553 899999998888888866666779999999999877655444444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.80 E-value=4.9 Score=40.81 Aligned_cols=121 Identities=17% Similarity=0.075 Sum_probs=69.0
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 008896 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (549)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i 141 (549)
+.+++.-|.++.+....++...++-+ ..++...+..++|... .+.+ ....+...++.+.+-.+ +|-|.++.+
T Consensus 22 r~~~~~~knv~i~s~~fl~~f~a~~g-l~nlq~~vn~~lg~~s--l~~~----y~~l~~s~m~~~~~Ir~-~g~K~tm~l 93 (390)
T KOG3097|consen 22 RKRLGILKNVLILSIAFLLTFTAYLG-LQNLQTSVNYDLGTVS--LGAL----YLSLIDSSMFMPLLIRF-LGTKWTMVL 93 (390)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhcCcccch--hhhh----hHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 34444455666666655555555533 3455555544333321 1111 12223333444455554 599999988
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
+...+.+.....-. +....++.+-.+.|++.+..+....++++++-...
T Consensus 94 av~~Y~lyiA~Nl~-----------------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y 142 (390)
T KOG3097|consen 94 AVFPYALYIAANLE-----------------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY 142 (390)
T ss_pred HHHHHHHHHHhhcc-----------------------------hhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence 87766554332211 34455667777889999999988888887765543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.85 Score=48.99 Aligned_cols=196 Identities=11% Similarity=0.057 Sum_probs=111.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--HHHHHHHhHHHHHhhhccch---HHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL--GISQASSVLGGFLADAYLGR---YWTIAI 141 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~--~~~~~~~l~~G~lsD~~~GR---~~~~~i 141 (549)
.|+..+.++...+...+.+..+-+-........++++.+++....++.. .+.....+...+..-++ |+ |+.+..
T Consensus 260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r~~~~~ 338 (488)
T KOG2325|consen 260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKRRIILL 338 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccceeeee
Confidence 3667777778888888888776666677777788888776655444433 22333333444444443 43 333433
Q ss_pred HHHHHHHHHHHHHHh-hhhc---ccCCC-CCcccccccccC-CCCCcchhhHHHHHHHH-HHHHHhccCcchhhhhhhcc
Q 008896 142 FTTIYLAGLTGITLC-ATMK---VFMPN-QDNCDRISQLLG-SCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGAD 214 (549)
Q Consensus 142 ~~~l~~~g~~~~~~~-~~~~---~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad 214 (549)
+..+......+.... .+.+ ...+. .-.|. .... =|......+...++++. ++.|.+.-.+.....++-++
T Consensus 339 g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~---~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk 415 (488)
T KOG2325|consen 339 GFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCD---FEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK 415 (488)
T ss_pred hHHHHHHhhheeeeeccccccccccccccccCcC---cccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence 322222222221111 0000 00110 00110 0011 25555555556555553 34555555556667788899
Q ss_pred cCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 008896 215 QFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 215 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~ 272 (549)
+..+++ .+..-+++.....++..+||++...+....|.|+...+.....++.
T Consensus 416 iLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~ 467 (488)
T KOG2325|consen 416 ILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV 467 (488)
T ss_pred HhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence 999988 6777778888889999999999988888888777655544443333
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=88.79 E-value=39 Score=36.71 Aligned_cols=167 Identities=13% Similarity=0.020 Sum_probs=93.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~---s~~~a~~~~~~~~~-~~~~~~l~~G~lsD~~~GR~~~~~i~ 142 (549)
-++.++.+.+..|+..+.+..+ --+++.+=+ +.+....+=....+ ...+..++-.++++++ +|.+++.+.
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~l-----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~ 95 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTIL-----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYII 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 3556777777777766665322 222332222 22222222222222 3455566789999986 999999888
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCC---cchhhHHHH-HH-------HHHH-HHHhccCcch-hhh
Q 008896 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP---AKSWQMLYL-YT-------VLYI-TGFGAAGIRP-CVS 209 (549)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~-------~~~l-~g~g~g~~~~-~~~ 209 (549)
...+.....++++... |. +...||+. .|.. ....+...+ .+ ..++ .-+-.....+ .-.
T Consensus 96 ~~~F~~fF~~f~~vly-----P~---~~~lhp~~-~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW 166 (491)
T PF03219_consen 96 IIPFLGFFALFAFVLY-----PN---RDILHPDA-FADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFW 166 (491)
T ss_pred HHHHHHHHHHHHHHHh-----hc---hhhcCCCH-HHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777776665422 11 01111111 0100 000111111 11 1111 1122222223 457
Q ss_pred hhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008896 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 210 ~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~ 254 (549)
++..|.++.++ -.+++.++..+.|+|..++..+..++.+
T Consensus 167 ~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 167 GFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999888 7899999999999999999999888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.95 E-value=4 Score=43.68 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcch
Q 008896 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRY-WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (549)
Q Consensus 106 ~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~-~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (549)
-.-....+|.++-.+|..+..+.. +-.+| +.+.+..+.-++...++.++..-+..+ .+..-
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~--~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~----------------~p~~~ 369 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM--WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSR----------------LPVFF 369 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE--eeCCCccchHHHHHHHHHHHHHHHHhcCCcccc----------------CCeee
Confidence 334566777787777777554431 11222 244444555555555544432110000 00000
Q ss_pred hhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008896 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (549)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i 248 (549)
.+-+..++..++.|+..|-..+....+..+..++++ |..+-.+..++.++|-.+|..+
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 244666777889999999888888888888887765 6666666666777776666554
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.78 E-value=3.7 Score=40.53 Aligned_cols=140 Identities=13% Similarity=0.078 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcc
Q 008896 107 SSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 183 (549)
Q Consensus 107 a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~---~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (549)
-+.+.+.|+++..+|.-+...|..+- |. ..+.+...+......+..+... ..|.
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s--~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP~------------------ 340 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS--SPKVESYMQIVFLVSIAALLLPILTSS---VSPS------------------ 340 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC--CcccchHHHHHHHHHHHHHHHHHHHhc---cCCC------------------
Confidence 46778888887777776666665542 22 2344443333332222222111 1121
Q ss_pred hhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 008896 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (549)
Q Consensus 184 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~ 263 (549)
..+...-+++..+.-.+.|..+|.+.-+=....|++. |...++++....++-.-++-...---....+-|..|.
T Consensus 341 kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~ 414 (454)
T KOG4332|consen 341 KESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFG 414 (454)
T ss_pred cCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhh
Confidence 1233334556556667778889999888888889888 9999999988887655432211000011245677888
Q ss_pred HHHHHHHHHHHH
Q 008896 264 ALAIAMGISNML 275 (549)
Q Consensus 264 i~~~~~~i~~~~ 275 (549)
++.+...++.+.
T Consensus 415 icS~~~~~a~i~ 426 (454)
T KOG4332|consen 415 ICSAFLFVASIL 426 (454)
T ss_pred hhHHHHHHHHHH
Confidence 887776666544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=86.49 E-value=2.4 Score=44.12 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHhhccch---hHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccCCCc
Q 008896 422 VGIGLAVSILSVIWA--GLLEFLYEEAPDA---MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 496 (549)
Q Consensus 422 i~~G~~~~~~~~~~a--~~~~~~~~~~P~~---~rg~~~g~~~~~~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~~~n 496 (549)
+.+|+.+.+++.... ...++..++++++ .|..+-.++....++|.+++..+.+++.+..|
T Consensus 36 ~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~--------------- 100 (372)
T PF00854_consen 36 FYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG--------------- 100 (372)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS----------------
T ss_pred HHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc---------------
Confidence 345555444443332 6777888887665 56667788899999999999999888865322
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhccccc
Q 008896 497 TGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 528 (549)
Q Consensus 497 ~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~ 528 (549)
+...|++.++..+++++.|+...++|+.+
T Consensus 101 ---~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 101 ---WFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred ---hhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 46788888888888888888777777765
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=81.92 E-value=5.6 Score=42.52 Aligned_cols=54 Identities=13% Similarity=0.003 Sum_probs=41.6
Q ss_pred HHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 198 GFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 198 g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g 257 (549)
.+......-....+.+++.|+.. -++.+++.....|+|..++..++..+.+..+
T Consensus 329 ~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 329 EVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333334455567899999888 7999999999999999999999988876554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 549 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 2e-11 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 1e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 299 bits (768), Expect = 2e-95
Identities = 99/553 (17%), Positives = 187/553 (33%), Gaps = 117/553 (21%)
Query: 64 KTGGWIAAL-FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLG 116
W + +I +E ER +++G+ + F+ + S A + + ++F+
Sbjct: 6 DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
+LGG++AD + G+Y TI + IY G + +
Sbjct: 66 GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------ 107
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
+ YT L++ G+ GI+P VSSF DQFD+ K+ + F+ FY
Sbjct: 108 ---------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYF 155
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
++ G+ A + + G AFG + M ++ + F++G Y H P
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LE 350
V+ +A + + L + + G SA I L A +
Sbjct: 216 LPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
+ K V+ V++++R++ + A + + + + QA M
Sbjct: 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ 333
Query: 411 GHP-------------------------------RGASQLQRVGIGLAVSILSVIWAGL- 438
+ L+++G G+A++ LS I G
Sbjct: 334 WFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTI 393
Query: 439 ---------------------------------LEFLYEEAPDAMKSIGSAYAALAGGLG 465
LEF Y +AP AMK ++ L+ +G
Sbjct: 394 QLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG 453
Query: 466 CFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 525
+ N +KS T + ++ F ++ A +++ F A Y
Sbjct: 454 NLWVLLANVSVKSPTVT-----EQIVQTGMSVTAFQMFFF--AGFAILAAIVFALYARSY 506
Query: 526 KYRSEQKHGNDYE 538
+ + + E
Sbjct: 507 QMQDHYRQATGSE 519
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 37/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFL 128
+F EM ER +Y+G+ ++ +M++++ + A +++ + + + S +GGF+
Sbjct: 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
AD +G + + + G + A +
Sbjct: 78 ADRIIGARPAVFWGGVLIMLGHIVL----------------------------ALPFGAS 109
Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
L+ + + G ++P VS+ +DE + D F+ F + +GA +A +
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
V Q G+ AF AI M I ++++ G
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 9e-07
Identities = 80/572 (13%), Positives = 158/572 (27%), Gaps = 184/572 (32%)
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
K + D+ K+ I E + + +V+ +F+ + V F+
Sbjct: 36 KDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVE 84
Query: 117 ISQASSVLG---GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR-- 171
VL FL ++ T +Y+ L +VF N R
Sbjct: 85 -----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRLQ 135
Query: 172 ----ISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGADQFDERSKD 222
+ Q L PAK ++ + G G A +
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL---------------DVCLS 173
Query: 223 YKTHLDRFFNFFYLSV----TVGAIVAFTLVVYIQMEHGWGS-AFGALAIAMGISN---- 273
YK F F+L++ + ++ + Q++ W S + + I + I +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 274 MLFFIGTPLYRHRL---------------PGGSPL---TR---VAQVLVAAFRKR----- 307
+ + + Y + L + TR V L AA
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 308 -HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTV 366
+ E+ L + LD +L +V+ +P +L +
Sbjct: 294 HSMTLTPDEVKSLLL--------------------KYLDCRPQDLPREVLTTNPRRLSII 333
Query: 367 TQVEEVKTLV------RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQ 420
E ++ + + V T ++ L ++ +
Sbjct: 334 --AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-------------- 377
Query: 421 RVGIGLAV---------SILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 471
L+V +LS+IW + + + + + Y+ + SI
Sbjct: 378 -----LSVFPPSAHIPTILLSLIWF---DVIKSDVMVVVNKL-HKYSLVEKQPKESTISI 428
Query: 472 L-----------------NSIIKSVTGNPKKGQPNWLAQNINTGRFD-YLYWLLAV-LSV 512
SI+ N K + ++ D Y Y + L
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSD---DLIPPYLDQYFYSHIGHHLKN 483
Query: 513 INFCAFLYSAYRYKYRSEQKHGNDYEVMENKL 544
I + +R + D+ +E K+
Sbjct: 484 IEH-PERMTLFRMVFL-------DFRFLEQKI 507
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.93 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.9 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.89 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.8 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.73 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.45 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.36 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.32 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.11 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.06 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.78 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.12 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=263.35 Aligned_cols=415 Identities=21% Similarity=0.321 Sum_probs=248.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i 141 (549)
++.++.+.+..++..+++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3456678888999999999999999999999999 9999999999999999999999999999995599999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchh-hHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCC
Q 008896 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
+.++..++.++++++ . +.+.++++|++.|++.+...++..++++|.+|+++
T Consensus 91 ~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 91 LSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 999999998888775 3 57788999999999999999999999999999888
Q ss_pred hhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHH
Q 008896 221 KDYKTHLDR---FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 297 (549)
Q Consensus 221 ~~~~~~r~~---~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (549)
|++ .+++++.+.++|..++|.+++++.+..||++.|++.++..+++.+++++..+..+.++++.++..+..
T Consensus 143 ------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (524)
T 2xut_A 143 ------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFL 216 (524)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHH
Confidence 654 45558999999999999999999998999999998888777666665554444433333322222222
Q ss_pred HHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCccchhhHhh----hhhccccCCCCCC-------cccCc
Q 008896 298 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA----LELKEDVINPSPW-------KLCTV 366 (549)
Q Consensus 298 ~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~----~~~~~~~~~~~~~-------~~~~~ 366 (549)
+.+..+.|+++...+ .... +.+.. ........+.+.++...+.... ...+. ...++| ..+..
T Consensus 217 ~~~~~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 289 (524)
T 2xut_A 217 PVIRSALLTKVEGKG-NIGL-VLALI---GGVSAAYALVNIPTLGIVAGLCCAMVLVMGF--VGAGASLQLERARKSHPD 289 (524)
T ss_dssp ----------CTTHH-HHHH-HHHHH---HHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH--HHTGGGTHHHHSCCSCCS
T ss_pred HHHHHHHhhhhcccC-ccch-hhhhh---hhhhhhhhhcccchhhhhhhhhhhhhhhhcc--cccchhhHHhhhhccccH
Confidence 222222222110000 0000 00000 0000000000000000000000 00000 000122 01111
Q ss_pred hhHHHHHHHHhhchhhhHHHHHHHHhhhhhhHHHHHHhhhccC---C--------------------C------CC--CC
Q 008896 367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH---M--------------------G------HP--RG 415 (549)
Q Consensus 367 ~~ve~~k~~~~~~~~~~~~~~~~~~~~~~~t~~~~q~~~~~~~---~--------------------~------~~--~~ 415 (549)
.+.++.|+.+..++.++....++..+.+..+.+..+...++.. . + ++ ++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (524)
T 2xut_A 290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK 369 (524)
T ss_dssp SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence 2233445555555566666666666666666665554433321 0 1 11 11
Q ss_pred CCchHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHhhccchhHHHHHHHHHHH
Q 008896 416 ASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALA 461 (549)
Q Consensus 416 ~~~l~~i~~G~~~~~~~~~~a----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~~ 461 (549)
.+...++.+|+++.+++++.. ..++++.+.+|++.||.++|+.+..
T Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 449 (524)
T 2xut_A 370 LTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLS 449 (524)
T ss_dssp -CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGG
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHH
Confidence 233344555555444433210 2333456889999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCCCCCcccC-CCcccchhHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 008896 462 GGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 531 (549)
Q Consensus 462 ~~ig~~l~~~l~~~v~~~~~~~~~~~~~w~~~-~~n~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~ 531 (549)
.++|+.+++.+.+.+.+.++ .+|+.+ +++. ..+.|++.+++++++.++++++.++++++.++
T Consensus 450 ~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (524)
T 2xut_A 450 VTVGNLWVLLANVSVKSPTV------TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDHY 512 (524)
T ss_dssp HHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHhccccc------ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 99999999999998865332 235332 1121 12347888888899888888888877765443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-26 Score=241.72 Aligned_cols=185 Identities=23% Similarity=0.403 Sum_probs=163.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~ 139 (549)
+++++..+.+.+..++..+++|++..+++.|++++ +|.+..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~ 88 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV 88 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 44566888999999999999999999999999998 9999999999999999999999999999999923999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCC
Q 008896 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
.++.++..++.++++++ .+.+.++++|++.|++.+...++..++++|++|++
T Consensus 89 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 140 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEH 140 (491)
T ss_dssp HHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcc
Confidence 99999999999888765 45677899999999999999999999999999987
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
+.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++.+++++..+
T Consensus 141 ~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 141 DRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp TTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 732 7778888999999999999999999999999999999987777666666554433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=244.35 Aligned_cols=165 Identities=14% Similarity=0.142 Sum_probs=121.9
Q ss_pred HHHHHHHHhcCC----C----hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008896 91 NMVTFMFYVMHK----S----FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 91 ~l~~yl~~~l~~----s----~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~ 162 (549)
...+++.++++. + ....+++++.+.++..++++++|+++||+ |||++++++.+++.++.++++++......
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~ 111 (491)
T 4gc0_A 33 GTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTS 111 (491)
T ss_dssp GTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344555555532 2 34456788889999999999999999997 99999999999999999998864211100
Q ss_pred CCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 008896 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 242 (549)
... .. .-...-..+...++++|++.|+|.|+..+..+.+++|..|++. |++..++++.+..+|.
T Consensus 112 ~~~--~~--------~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~ 175 (491)
T 4gc0_A 112 INP--DN--------TVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQ 175 (491)
T ss_dssp SSS--SS--------SCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHH
T ss_pred hcc--hh--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhh
Confidence 000 00 0000011578899999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHhhc--------cchHHHHHHHHHHHHHH
Q 008896 243 IVAFTLVVYIQME--------HGWGSAFGALAIAMGIS 272 (549)
Q Consensus 243 ~i~p~i~~~l~~~--------~gw~~~f~i~~~~~~i~ 272 (549)
.+++.++..+... .+||+.+.+..+..++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 176 LLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred hhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 9998888776543 34666665555444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=212.51 Aligned_cols=179 Identities=13% Similarity=0.060 Sum_probs=152.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
.+|+.++.+.+..++..+..+.+...+ +++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHH-HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence 346667777777777777765555554 5556677 9999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHH----hhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCCh
Q 008896 146 YLAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (549)
Q Consensus 146 ~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (549)
..++.+++++ + .+.+.++++|++.|++.+...+...++++|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~- 152 (451)
T 1pw4_A 102 AAAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE- 152 (451)
T ss_dssp HHHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-
T ss_pred HHHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-
Confidence 9999998887 4 456778999999999999999999999999999888
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
|++.+++++.+..+|..++|.+++++.+..| ||+.|++.++..++..++.++..+
T Consensus 153 -----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 153 -----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp -----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999888888 999999888776665555444333
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-21 Score=199.35 Aligned_cols=181 Identities=12% Similarity=-0.011 Sum_probs=151.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 008896 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~ 144 (549)
+++++.+..+.+..++..+..+.+ ..+.+++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 445666777777777777776544 4455668889999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++...... .+.+.++++|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999999888432110 468889999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hccc-------------------------hHHHHHHHHHHHHHHHHHHHh
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~-~~~g-------------------------w~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++.+++++.+.++|..++|.+++++. +..+ ||+.|++.++..++..+++++
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 5544 999998776665555444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=184.70 Aligned_cols=167 Identities=13% Similarity=0.107 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008896 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~ 151 (549)
+.+.+..++..+........+ +.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 345556666666665555554 445778999999999999999999999999999999997 999999999999999998
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHH
Q 008896 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
++.++ .+.+.++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88876 577889999999999999999999999999999988 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 008896 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~ 274 (549)
++++....+|..++|.+++++.+..|||+.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999887766555444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-18 Score=178.47 Aligned_cols=169 Identities=11% Similarity=-0.121 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
..+.+....++..+++..+.++++.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 555666666666667666778899999999999999999999999999999999999999997 9999999888776553
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhH-HHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
...+...... ... ..++.++++.+++.+...+...+...+..++.. +.++
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 3222111000 000 012233444344333333333333333322211 1256
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 66777777788999999999999886 58999998765553
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=137.15 Aligned_cols=179 Identities=15% Similarity=0.128 Sum_probs=149.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chHHHHHHHHHHH
Q 008896 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIY 146 (549)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~-GR~~~~~i~~~l~ 146 (549)
.+.++.+.+..++..+.++++..+++.|+++.+|++..+++.+.+.+.++..++.++.|+++||++ |||+.+.++..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 356777888888888888889999999999889999999999999999999999999999999832 8888888777665
Q ss_pred H-HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 147 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
. ++.+++.+. +. .+...+.+..++.|++.++..+....++.|.+|++.
T Consensus 331 ~~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 379 (451)
T 1pw4_A 331 VTIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA----- 379 (451)
T ss_dssp HHHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred HHHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence 5 454443322 10 245667777888999999988888999999999988
Q ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 226 ~r~~~~~~~~~~~~i-g~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|++.+++++...++ |..++|.+.+++.+..||++.|++.+++.+++.++.++
T Consensus 380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999888777766665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-11 Score=127.34 Aligned_cols=168 Identities=10% Similarity=0.004 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~ 147 (549)
+.++...+..++.....+.+..+++.| +++.+|++..+++...+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 356666677777777788888999999 8888899999999999999999999999999999997 99999999998888
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++.+. .+.. .++..++.|++.+...+...++..|.+|++ +
T Consensus 337 ~~~~~~~~~----------------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~ 380 (438)
T 3o7q_A 337 ALCLISAFA----------------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------T 380 (438)
T ss_dssp HHHHHHHHC----------------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------H
T ss_pred HHHHHHHHc----------------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------c
Confidence 887766654 2222 334457888999999999999999998843 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~~ 274 (549)
+.+.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++..+
T Consensus 381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 55555544 556999999999999999998 99998876655444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=129.50 Aligned_cols=176 Identities=10% Similarity=0.047 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s---~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
..+...+..++....++....+++.|+.+.++.. ....+...++..++..++.+++|+++||+ |||+++.++.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 3334444334434444445556788887766532 23345556666677788899999999997 9999998888777
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++.+. .+...+++..++.+++.+...+....+.+|.+|++.
T Consensus 300 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------ 345 (417)
T 2cfq_A 300 SVRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------ 345 (417)
T ss_dssp HHHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 7765555432 234455566666777766666777889999999887
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 008896 227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 227 r~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (549)
|++..++ ++....+|+.++|.++|++.+..|+...|.+.++..+++.++.+...
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999888 57788899999999999999888998888887777666665544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=123.48 Aligned_cols=186 Identities=12% Similarity=0.015 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH-----HHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT 144 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~-----i~~~ 144 (549)
..+.+.+..++....+......++.|+.+.++.+..+.+.......++..++.++.|+++||+ |||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 344455555555566666667788899888888866677777777888888889999999997 9876544 6666
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhh
Q 008896 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.+....... ....+...++++.++.|++.+...+....+..|.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---- 419 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGT-------------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---- 419 (491)
T ss_dssp HHHHHHTTTHHHHHHCCC-------------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred HHHHHHHHHHHHHHhcCC-------------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 666665555443211000 001245667777888999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 008896 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (549)
|+++.++++....+|..++|.+.+++.+. ++.+.|++.++..+++.+++++..++
T Consensus 420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888654 66677777776666666555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-08 Score=108.25 Aligned_cols=186 Identities=9% Similarity=-0.020 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 008896 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g 149 (549)
....+....+....+.+.+. +..+++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVL-YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHH-HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH-hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 33333333333444444444 345666778888887777777777788889999999999997 9999999998888887
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhh
Q 008896 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+....... . .....+....+..+....+..+....+.+|.+|++. |++
T Consensus 356 ~~~l~~~~~~~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~ 406 (491)
T 4gc0_A 356 MFSLGTAFYTQ---A--------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGK 406 (491)
T ss_dssp HHHHHHHHHTT---C--------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHH
T ss_pred HHHHHHHHhcc---c--------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHH
Confidence 77665542210 0 122222222222222233345677789999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008896 230 FFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (549)
Q Consensus 230 ~~~~~~~~~~ig~~i~p~i~~~l~~------~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (549)
++++.+....+++.+++.+.+.+.+ ..++.+.|++.+++.+++.++.++..|+.+.+
T Consensus 407 ~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 407 ALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 9999988888999888887766543 34556677777777777776666666665443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-09 Score=110.58 Aligned_cols=164 Identities=12% Similarity=-0.095 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH-HH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l-~~ 147 (549)
+..+...+..++.....+.+..+++.|+++.+|.+..+++...+...++..++.++.++++||+ ||+ +.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566677777778888888888889999888999999999999999999999999999999997 872 2333322 22
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhh
Q 008896 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++......... + ..+.+.+++..++.|++.+...+....+..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0245666777888899999999999999999988 56 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 008896 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 266 (549)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~ 266 (549)
++..++++...++|..++|.+.+.+.+..+|...+.+..
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999999988878887776543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-06 Score=92.20 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc--ch-----
Q 008896 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~--gw----- 258 (549)
+...++++.++.|++.+...+....+..|.+|++. |++++++++....+|..++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 45567778889999999999999999999999998 999999999999999999999999987643 23
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhhcc
Q 008896 259 ----GSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 259 ----~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
+..|++.+++.+++.+++++..+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22355555555555554444333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.91 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.82 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.43 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.28 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.5e-23 Score=214.91 Aligned_cols=183 Identities=12% Similarity=0.030 Sum_probs=146.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 008896 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l 145 (549)
.+|..+..+++..+...+... ....+.+++. ++|++.++.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 22 ~~w~i~~~~~~~~~~~~~~~~-~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~ 98 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLVRK-NFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 98 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-SHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHH
Confidence 345555545444444444432 2345567876 5899999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhh
Q 008896 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.++++++.... .+...++++|++.|++.+...+....+++|.+|+++
T Consensus 99 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----- 149 (447)
T d1pw4a_ 99 AAAVMLFMGFVPWAT------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE----- 149 (447)
T ss_dssp HHHHHHHHHHCHHHH------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-----
T ss_pred HHHHHhhccccchhh------------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc-----
Confidence 999988887653211 256678999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHhhcc
Q 008896 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~-~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (549)
|++.+++++.+..+|..++|.+++.+... .+|++.|++.++..++..++.+...+
T Consensus 150 -r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 150 -RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp -HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred -ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 99999999999999999999998877655 47999998877776665555544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=9.2e-19 Score=177.31 Aligned_cols=180 Identities=12% Similarity=-0.092 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 008896 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~ 148 (549)
|..|.+.+..++..++...+.+.++.|+++++|.+.++.+++.+++.++..++.++.|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4677788888888888877778889999999999999999999999999999999999999997 999999999988888
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhh
Q 008896 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+..++.+....+ ......++.+.+.+.+.+...........+..+++. ..+.
T Consensus 86 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T d1pv7a_ 86 MFAPFFIFIFGP------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp THHHHHHHTHHH------------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHS
T ss_pred HHHHHHHhhhhh------------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhH
Confidence 877776652210 111112333333333333333333332222222211 2255
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
...+........+..++|.+++.+.+. +|++.+........+..++.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 186 (417)
T d1pv7a_ 138 FEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHH
Confidence 556666777788888999998888765 4555555554444444444333
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=6.5e-13 Score=136.36 Aligned_cols=182 Identities=15% Similarity=0.061 Sum_probs=140.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 008896 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~ 146 (549)
+.+.++.+....++.....+++..+++.|+.+.++.+..+.+.......++..++.+++|+++||+ +|++.........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFM 325 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHH
T ss_pred cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhH
Confidence 345777788888888888889999999999999999999999999999999999999999999997 8765444333333
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhh
Q 008896 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.+..+....... .+. .+....++..++.|++.++..+....+..|.+|++.
T Consensus 326 ~~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 376 (447)
T d1pw4a_ 326 TLVTIATIVYWM----NPA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 376 (447)
T ss_dssp HHHHHHHHHTTS----CCT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHHHh----ccc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------
Confidence 222222222110 011 355667777788899988888999999999999888
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 008896 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~i-g~~i~p~i~~~l~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (549)
|+++.++.+...++ |..++|.+.+++.+..||+..|++.+++.+++.++++.
T Consensus 377 ~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887776 56678999999999999999998877766655554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1e-11 Score=124.46 Aligned_cols=145 Identities=10% Similarity=0.027 Sum_probs=121.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCC
Q 008896 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 181 (549)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~~~~l~~G~lsD~~~GR~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (549)
.+....+.......++..++.++.+++.||+ ||++++.++.++..++.+++.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~------------------------- 309 (417)
T d1pv7a_ 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA------------------------- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred cchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc-------------------------
Confidence 3445556667777888889999999999997 99999999999888888777664
Q ss_pred cchhhHHHHHHHHHHHHHhccCcchhhhhhhcccCCCCChhhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhhccchHH
Q 008896 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWGS 260 (549)
Q Consensus 182 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~i~p~i~~~l~~~~gw~~ 260 (549)
.+.+.+++..++.|++.+...+...+++.|.+|++. |++.+++. .....+|..++|.+.|++.+..||++
T Consensus 310 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~ 380 (417)
T d1pv7a_ 310 ---TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380 (417)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence 456777888889999999999999999999999998 99999985 45677999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 008896 261 AFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 261 ~f~i~~~~~~i~~~~~~~~~~ 281 (549)
.|++.+++.++..++.++..+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 381 AYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999887777666665555443
|