Citrus Sinensis ID: 008910

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
Protein Sequence
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRLF
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHEEEEEEEcccHHHHHHHHHHHHHHHHHHcHHHHccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccEEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEEEEEEEEEEEEcccccccccEEEEEEEccccEEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccEEEEEccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEcccccccccccccccccccEEEEEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEccccccccEEEEEEEEEcccccccccccccEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHcccccEEEEEEEEEEEEEEEcccccccccccccEEEEEEcccEEEEEEEEEccccccEEccEEEEEEEEccccEEEEEEEEcccccccccEEEEEEcccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHccHHHHHHHcccccccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEEccccEEEEEEEEEEEEccEEEEcEEEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEEcccHcccccHHHHHHHHHHHHHHHHccccccEEEEccccccHHHcccccEEEEEEEEEEEccccccccccccEEEEEEEEccccccEEccccccccccEEEEEEEEccEcccccEEEEEEEcccccccccccEEEEEEHHHccccccccEEEEcccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEEcccEEEEEEEEEccccccEcEEEEEEEEcccccEEEEEEEEcccccccccEEEEEEHHHHccccccEEEEc
Coil and Loop (DISEMBL)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVedskkilpaefypswvvfSHRQKLTWLNHHLEKLWPYVNEAASELIKSsvepvleqyRPFILSslkfskftlgtvapqftgvsiiedggsgvtMELEMQWDANSSIILAIKTRLGValpvqvknigftGVFRLIfrplvdefpgfaaVSYSLREKKKLDFKLKVvggdistipglsdsIEATIHDAIedsitwpvrkivpilpgdyselelkpvgtLEVKLVQAkgltnkdligksdpyavlfvrplpektkksktinndlnpiwNEHFEFIVEDESTQHLVVRIyddegiqsseliGCAQVRlcelepgkvKDVWLKLVKDldvqrdtkyrgQVHLELLycpfgmenvftnpfapnfsmTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAenlpasdlmgkadpYVVLTMKksetrnktrvVNDCLNPIWNQTFDFVVEDGLHDMLIAEVwdhdtfgkRYLSRYFQNRKTWLHDGSEALRLF
Flexible Loop (DISEMBL)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGdistipglsdsIEATIHDAiedsitwpvRKIVPILPGDYSELELKPVGTLEVKLVQAKgltnkdligksdpyAVLFVrplpektkksktinndlnPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCElepgkvkdVWLKLVKDldvqrdtkyrGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKAlksgangteaielekdasqkRREVIIRGVLSVTVILAenlpasdlmgkaDPYVVLTMkksetrnktrvvndclnpIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQnrktwlhdgsealrlf
Low Complexity Region (SEG)
MgfffglvvglvvglgiivgfvRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGkvkdvwlklvkdldvQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRLF
Disordered region (IsUnstruct)
**FFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP******KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKV*****************************EVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLH*********
Disordered Region (DISOPRED)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK***********GQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK******************IELEKDASQKRREVIIRGVLSVTVILAENL******GK*DPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDG*****LF
Disordered Region (DISEMBL)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRLF
Disordered Region (DISPRO)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQR*TKYRGQVHLELLYCPFGM***************************************************IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRLF
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	549	2.2.26 [Sep-21-2011]
Q8L706	560	Synaptotagmin-5 OS=Arabid	yes	no	0.941	0.923	0.749	0.0
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.952	0.919	0.703	0.0
Q9SKR2	541	Synaptotagmin-1 OS=Arabid	no	no	0.830	0.842	0.323	8e-60
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.834	0.848	0.285	2e-55
B6ETT4	537	Synaptotagmin-2 OS=Arabid	no	no	0.850	0.869	0.300	1e-54
Q5RAG2	1104	Extended synaptotagmin-1	yes	no	0.826	0.411	0.260	5e-31
Q5DTI8	891	Extended synaptotagmin-3	yes	no	0.823	0.507	0.265	1e-30
A0FGR8	921	Extended synaptotagmin-2	yes	no	0.734	0.437	0.256	1e-30
Q9Z1X1	1088	Extended synaptotagmin-1	no	no	0.828	0.418	0.25	5e-30
Q7ZWU7	876	Extended synaptotagmin-2-	N/A	no	0.779	0.488	0.260	6e-30

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/530 (74%), Positives = 462/530 (87%), Gaps = 13/530 (2%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF  G+V+GL+VG+ II+GFV+ EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYP
Sbjct: 1   MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLNHHL K+WPYV+EAASELIK+SVEPVLEQYRP I++SL FSK TLG
Sbjct: 61  SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVS+I+   +G+T+EL+MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IFRPLV++FP F AVS SLREKKKLDF LKVVGGDIS IPGLS++IE TI DA+EDSITW
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQHLVVRIYDDEG+Q+SELIGCAQ+RLCELEPGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL++QRDTK RG+VHLELLY P+G  N   NPF  + SMTSLE+VL N    
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVTS-SMTSLERVLKN---- 415

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
                   +  + E  +S+KR++VI+RGVLSVTVI AE +P  DLMGKADPYVVL+MKKS
Sbjct: 416 --------DTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKS 467

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
             ++KTRVVND LNP+WNQTFDFVVEDGLHDML+ EVWDHDTFGK Y+ R
Sbjct: 468 GAKSKTRVVNDSLNPVWNQTFDFVVEDGLHDMLVLEVWDHDTFGKDYIGR 517

May be involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/532 (70%), Positives = 448/532 (84%), Gaps = 9/532 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF FGL +G+ V  G++V F R  + RS  R++LA TIAAFARMTV+DS+K+LP +FYP
Sbjct: 1   MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN  LEK+WPYVNEAASELIKSSVEPVLEQY P +L+SLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIED--GGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178
           TVAPQFTGVSI+E   G +G+TMELEMQWD N  I+L +KT LGV+LP++VKNIGFTGVF
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query: 179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSI 238
           RLIF+PLVDEFP F A+SYSLREKK LDF LKV+GG++++IPG+SD+IE TI DAIEDSI
Sbjct: 181 RLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240

Query: 239 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT 298
           TWPVRKI+PILPGDYS+LELKPVG L+VK+VQAK L NKD+IGKSDPYA++F+RPLP++T
Sbjct: 241 TWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRT 300

Query: 299 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 358
           KK+KTI+N LNPIWNEHFEFIVED STQHL VR++DDEG+ SS+LIG AQV L EL PGK
Sbjct: 301 KKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGK 360

Query: 359 VKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGE 418
           VKD+WLKLVKDL++QRDTK RGQV LELLYCP G E    NPF P++S+T LEKV     
Sbjct: 361 VKDIWLKLVKDLEIQRDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKV----- 415

Query: 419 KALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMK 478
             LK  +  ++A +++K  + K+++VI+RGVLSVTV+ AE+LPA D MGKAD +VV+T+K
Sbjct: 416 --LKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLK 473

Query: 479 KSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
           KSET++KTRVV D LNP+WNQTFDFVVED LHD+L  EVWDHD FGK  + R
Sbjct: 474 KSETKSKTRVVPDSLNPVWNQTFDFVVEDALHDLLTLEVWDHDKFGKDKIGR 525

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2

 Score =  231 bits (590), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 166/513 (32%), Positives = 258/513 (50%), Gaps = 57/513 (11%)

Query: 2   GFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPS 61
           GF  G+ +GLV+G  + V  + ++    ++RS       A  RM  E           P 
Sbjct: 12  GFGVGISLGLVIGYVLFVYLLPNDVKDPEIRSIADQDPKAMLRMLPE----------IPL 61

Query: 62  WVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRP-FILSSLKFSKFTLG 120
           WV      ++ W+N  LE +WPY+++A  +  K+  +P++E+  P + + S++F   TLG
Sbjct: 62  WVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLTLG 121

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           ++ P F G+ +       + ME  ++W AN +I++AIK   G+   VQV ++      R+
Sbjct: 122 SLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKA-FGLKATVQVVDLQVFAQPRI 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
             +PLV  FP FA +  SL EK  +DF LK+ G D+ +IPGL   ++  I D + +   W
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           P   +VPIL  D ++   +PVG + VK+V+A GL  KDL+G +DP+  + +      +KK
Sbjct: 241 PKTLVVPIL--DPAKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPSKK 298

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           +   + +LNP WNE F+F V D  TQ L   +YD E + + E +G   + L E+ P + K
Sbjct: 299 TTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDEHK 358

Query: 361 DVWLKLVKDLDVQRD----TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTN 416
              L+L K LD   D     KYRG++ +ELLY PF  E +        F  T        
Sbjct: 359 AFTLELRKTLDGGEDGQPPDKYRGKLEVELLYKPFTEEEM-----PKGFEET-------- 405

Query: 417 GEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGK--ADPYVV 474
             +A++    GT A                 G+L V V  AE     D+ GK   +PYV 
Sbjct: 406 --QAVQKAPEGTPAA---------------GGMLVVIVHSAE-----DVEGKHHTNPYVR 443

Query: 475 LTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           +  K  E   KT+ V    +P WN+ F F++E+
Sbjct: 444 IYFKGEE--RKTKHVKKNRDPRWNEEFTFMLEE 474

Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/514 (28%), Positives = 252/514 (49%), Gaps = 56/514 (10%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           +GF  G+ +GL++G  +++    S       R  + T+I+    +  +            
Sbjct: 11  IGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIP---------- 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQY-RPFILSSLKFSKFTL 119
            W+     +++ W N  +  +WPY+++A   +I+SSV+P+   Y   F + S++F   +L
Sbjct: 61  LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120

Query: 120 GTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
           GT+ P   GV   E     +  E  ++W  N +I+L +K  L + + VQ+ ++ F  + R
Sbjct: 121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKV-LSLRIRVQLVDLQFFAIVR 179

Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
           +  +PL+  FP F  V  SL EK  +DF LKV+GGD+ +IPGL   ++ TI   +     
Sbjct: 180 VALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYH 239

Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
           WP    +PIL    + ++ KPVG L V +++A+ L  KDL+G SDPY  L +       K
Sbjct: 240 WPQVLEIPILDSSTASVK-KPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAK 298

Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
           K+     +LNP WNEHF+ IV+D ++Q L + ++D + +   + +G   + L ++ PG+ 
Sbjct: 299 KTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGER 358

Query: 360 KDVWLKLVKDLDVQRDT---KYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTN 416
           K+  L L+K+ +V  D+   K RG++ ++L Y PF                         
Sbjct: 359 KEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPF------------------------- 393

Query: 417 GEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGK---ADPYV 473
            E+++K      E    E D    +      G+LSV V       A D+ GK   ++PY 
Sbjct: 394 REESIKRRKESREEKSSEDDDFLSQ-----AGLLSVAV-----QSAKDVEGKKKHSNPYA 443

Query: 474 VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           V+  +  + + K        +P WN+ F F +E+
Sbjct: 444 VVLFRGEKKKTKMLKKTR--DPRWNEEFQFTLEE 475

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1

 Score =  214 bits (545), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 157/523 (30%), Positives = 258/523 (49%), Gaps = 56/523 (10%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           +GF FG  +G+V+G  + + F  ++    +++  +       A M  E           P
Sbjct: 11  IGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIATMFPE----------IP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL-EQYRPFILSSLKFSKFTL 119
            WV      ++ WLN  +  +WPY+++A  ++ KS  +P++ EQ   + + S++F   TL
Sbjct: 61  MWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTL 120

Query: 120 GTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
           G++ P F G+ +       + MEL ++W  N +II+  K   G+   VQV ++      R
Sbjct: 121 GSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKA-FGLKATVQVIDLQVYATPR 179

Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
           +  +PLV  FP FA +  SL +K ++DF LK++G D+  IPGL   ++  I D + +   
Sbjct: 180 ITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYL 239

Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
           WP    V I+  D S+   KPVG L VK+++A  L  KDL+G SDPY  L +       K
Sbjct: 240 WPKTLNVQIM--DPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGK 297

Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
           K+   +++LNP WNE F+ +V++  +Q L + +YD E +   + IG   ++L +L P + 
Sbjct: 298 KTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEP 357

Query: 360 KDVWLKLVKDLDVQR--DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNG 417
           K + L+L+K ++ +     K RGQ+ +E+ Y PF  +++  N   PN             
Sbjct: 358 KLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPN------------- 404

Query: 418 EKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGK--ADPYVVL 475
             A++    GT +                 G+L V V  AE     DL GK   +P V L
Sbjct: 405 --AVEKAPEGTPS---------------TGGLLVVIVHEAE-----DLEGKYHTNPSVRL 442

Query: 476 TMKKSETRNKTRVVNDCLNPIWNQTFDFVV-EDGLHDMLIAEV 517
             +  E   KT+ V     P W++ F F + E  ++D L  EV
Sbjct: 443 LFRGEE--RKTKRVKKNREPRWDEDFQFPLDEPPINDKLHVEV 483

May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RAG2|ESYT1_PONAB Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2

 Score =  136 bits (342), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 139/533 (26%), Positives = 233/533 (43%), Gaps = 79/533 (14%)

Query: 6   GLVVGLVV-GLGIIVGF--VRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFY--- 59
           GL VG V+ GL + +G+  VR E  RS LR+         AR  ++D +++     Y   
Sbjct: 75  GLSVGFVLFGLALYLGWRRVRDEKERS-LRA---------ARQLLDDEEQLTAKTLYMSH 124

Query: 60  ---PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSK 116
              P+WV F   +K  WLN  + ++WP++ +   +L+  +V P +    P  L +  F++
Sbjct: 125 RELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH-LQTFTFTR 183

Query: 117 FTLGTVAPQFTGVSIIE-DGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFT 175
             LG    +  GV +        + ++L + +  +  I + +K     A    VK +   
Sbjct: 184 VELGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKA---GVKGMQLH 240

Query: 176 GVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIE 235
           GV R+I  PL+ + P   AVS     +  LD     +  ++  IPGLS   +  I D+I 
Sbjct: 241 GVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIA 299

Query: 236 DSITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPY 286
             +  P R +VP++P      +L+   P G + + L+ A+GLT+KD      + GKSDPY
Sbjct: 300 AFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLTSKDKYVKGLIEGKSDPY 359

Query: 287 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGC 346
           A   VR L  +T  S+ I+ +LNP W E +E +V +   Q + V ++D +  +   L G 
Sbjct: 360 A--LVR-LGTQTFCSRVIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKDPDKDDFL-GR 415

Query: 347 AQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFS 406
            ++ + ++    V D W  L            +GQVHL L +                  
Sbjct: 416 MKLDVGKVLQAGVLDDWFPL---------QGGQGQVHLRLEWL----------------- 449

Query: 407 MTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLM 466
                        +L S A   E +         R E     +L V +  A++LP     
Sbjct: 450 -------------SLLSDAEKLEQVLQWNQGVSSRPEPPSAAILVVYLDRAQDLPLKKGN 496

Query: 467 GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 519
            + +P V L+++     +K     +C  P+W + F F ++D     L  +V D
Sbjct: 497 KEPNPMVQLSIQDVTQESKAVYSTNC--PVWEEAFRFFLQDPQSQELDVQVKD 547

May play a role as calcium-regulated intrinsic membrane protein.

Pongo abelii (taxid: 9601)

>sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 224/505 (44%), Gaps = 53/505 (10%)

Query: 28  RSKLRSELATTIAAFARMTVEDS--KKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYV 85
           R   R +L    AAF  +  E     + L  +  P+W+ F   +++ W N  + ++WPY+
Sbjct: 77  RRNRRGKLGRLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWPYL 136

Query: 86  NEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGS--GVTMEL 143
           +      I+  +EP + + +   L +  F+K   G   P+  GV +  D  +   VT++L
Sbjct: 137 SMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDL 195

Query: 144 EMQWDANSSIILAI-KTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREK 202
           ++ +  +  I + + K R GV+       +   G  R+I  PL+ + P   AV+    +K
Sbjct: 196 QICYIGDCEISVELQKIRGGVS------GVQLQGTLRVILEPLLVDKPFIGAVTVFFLQK 249

Query: 203 KKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELELK-P 260
             L      +  ++  +PG+++  ++ + D I   +  P R  VP+  G D + L +  P
Sbjct: 250 PHLQINWTGLT-NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVTNLRVPLP 308

Query: 261 VGTLEVKLVQAKGLTNKD----LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
            G + V L++AK L  KD    L GKSDPYA + +     +  +S+TI  +LNP WNE F
Sbjct: 309 CGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIG---LQHCRSRTIYKNLNPTWNEVF 365

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376
           EF+V +   Q L V +Y DE     + +G  Q+ L ++   +V D W  L        DT
Sbjct: 366 EFMVYEVPGQDLEVDLY-DEDTDKDDFLGSLQICLGDVMKNRVVDEWFAL-------NDT 417

Query: 377 KYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKD 436
              G++HL L +     +         N S  S   ++   E A     N  + +  E  
Sbjct: 418 T-SGRLHLRLEWLSLLTDQ---EALTENDSGLSTAILVVFLENACNLPRNPFDYLNGEYR 473

Query: 437 ASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPI 496
           A +  R V  +         A   P+S        YV LT+ K    +KT       +P+
Sbjct: 474 AKKLSRFVKNK---------ASRDPSS--------YVKLTVGKKTFTSKT--CPHSKDPV 514

Query: 497 WNQTFDFVVEDGLHDMLIAEVWDHD 521
           W+Q F F V     + L  +V D +
Sbjct: 515 WSQVFSFFVHSVAAEQLCLKVLDDE 539

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 215/480 (44%), Gaps = 77/480 (16%)

Query: 60  PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTL 119
           P+WV F   ++  WLN  ++ +WP++ +   +L + ++EP +       LS+  F+K  +
Sbjct: 184 PAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGANTH-LSTFSFTKVDV 242

Query: 120 GTVAPQFTGVSIIEDG--GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGV 177
           G    +  GV +  +      + ++L++ +  N  I L IK     A    VK+I   G 
Sbjct: 243 GQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRA---GVKSIQIHGT 299

Query: 178 FRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG--DISTIPGLSDSIEATIHDAIE 235
            R+I  PL+ + P   A+S     K  L+     +    D+  + GLSD+I   I D I 
Sbjct: 300 MRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLTNLLDVPGLNGLSDTI---ILDIIS 356

Query: 236 DSITWPVRKIVPILPGDYSELELK------PVGTLEVKLVQAKGLTNKD------LIGKS 283
           + +  P R  VP++    SE+++       P G L +  ++A+ L  KD      + GKS
Sbjct: 357 NYLVLPNRITVPLV----SEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKS 412

Query: 284 DPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343
           DPY ++ V     +  +S+ I  +L+P WNE +E +V +   Q L + ++ DE     + 
Sbjct: 413 DPYGIIRVG---NQIFQSRVIKENLSPKWNEVYEALVYEHPGQELEIELF-DEDPDKDDF 468

Query: 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAP 403
           +G   + L E+E  ++ D W  L        D   +G++HL L +              P
Sbjct: 469 LGSLMIDLIEVEKERLLDEWFTL--------DEVPKGKLHLRLEWL----------TLMP 510

Query: 404 NFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVIL----AEN 459
           N S  +L+KVLT+              I+ +KD +         G+ S  +IL    A N
Sbjct: 511 NAS--NLDKVLTD--------------IKADKDQAND-------GLSSALLILYLDSARN 547

Query: 460 LPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 519
           LP+   +  ++P  V+ M       ++++      P+W + F F + +     L  EV D
Sbjct: 548 LPSGKKI-SSNPNPVVQMSVGHKAQESKIRYKTNEPVWEENFTFFIHNPKRQDLEVEVRD 606

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

>sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicus GN=Esyt1 PE=2 SV=1

 Score =  133 bits (334), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 133/532 (25%), Positives = 237/532 (44%), Gaps = 77/532 (14%)

Query: 6   GLVVGLVV-GLGIIVGFVRSENARSK-LRSELATTIAAFARMTVEDSKKILPAEFY---- 59
           GL VG V+ GL + +G+ R  + + + LR+         AR  ++D ++I     Y    
Sbjct: 67  GLSVGFVLFGLALYLGWRRVRDGKERSLRA---------ARQLLDDEERITAETLYMSHR 117

Query: 60  --PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKF 117
             P+WV F   +K  WLN  + ++WP++ +   +L+  +V P +    P  L +  F++ 
Sbjct: 118 ELPAWVSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGANPH-LQTFTFTRV 176

Query: 118 TLGTVAPQFTGVSI-IEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTG 176
            LG    +  GV +        + ++L + +  +  I + +K     A    VK +   G
Sbjct: 177 ELGEKPVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDVEVKKYFCKA---GVKGMQLHG 233

Query: 177 VFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIED 236
           V R+I  PL+ + P   AVS    ++  LD     +  ++  IPGLS   +  I D+I  
Sbjct: 234 VLRVILEPLIGDLPIVGAVSMFFIKRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAA 292

Query: 237 SITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPYA 287
            +  P R +VP++P      +L+   P G + + L+ A+GL++KD      + GKSDPYA
Sbjct: 293 FLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYA 352

Query: 288 VLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCA 347
           ++ V     +T  S+ I+ +LNP W E +E IV +   Q + V ++D +  +   L G  
Sbjct: 353 LVRVG---TQTFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVFDKDPDKDDFL-GRM 408

Query: 348 QVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSM 407
           ++ + ++    V D W  L            +GQVHL L +                   
Sbjct: 409 KLDVGKVLQAGVLDNWYPL---------QGGQGQVHLRLEWL------------------ 441

Query: 408 TSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMG 467
                +L + EK         + ++  +  +  R E     +L V +  A++LP      
Sbjct: 442 ----SLLPDAEKL-------DQVLQWNRGIT-SRPEPPSAAILVVYLDRAQDLPLKKGNK 489

Query: 468 KADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 519
           + +P V L+++     +K     +C  P+W + F F ++D     L  +V D
Sbjct: 490 EPNPMVQLSVQDVTQESKATYSTNC--PVWEEAFRFFLQDPRSQELDVQVKD 539

May play a role as calcium-regulated intrinsic membrane protein.

Rattus norvegicus (taxid: 10116)

>sp|Q7ZWU7|EST2B_XENLA Extended synaptotagmin-2-B OS=Xenopus laevis GN=esyt2-b PE=2 SV=1

 Score =  132 bits (332), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 216/480 (45%), Gaps = 52/480 (10%)

Query: 60  PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTL 119
           P+WV F   ++  WLN  ++ +WPY+ +   +L + ++EP +       LS+  F+K  +
Sbjct: 116 PAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAVRGANAH-LSTFSFTKIDM 174

Query: 120 GTVAPQFTGVSIIEDG--GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGV 177
           G+   +  GV +  +      + ++L++ +   + I L +K     A    VK+I   G 
Sbjct: 175 GSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRA---GVKSIQLHGT 231

Query: 178 FRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG--DISTIPGLSDSIEATIHDAIE 235
            R+I  PL+ + P   A+S     K  L+     +    D+  + GLSD+I   I D I 
Sbjct: 232 MRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGLTNMLDMPGLNGLSDTI---ILDIIS 288

Query: 236 DSITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPY 286
           + +  P R  VP++  D    +L+   P G L +  ++A+ L  KD      + GKSDPY
Sbjct: 289 NYLVLPNRITVPLV-SDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPY 347

Query: 287 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGC 346
            V  VR L  +  +SK I  +LNP WNE +E +V +   Q L + ++ DE     + +G 
Sbjct: 348 GV--VR-LGNQVFQSKVIKENLNPKWNEVYEALVHEHPGQELEIELF-DEDTDKDDFLGS 403

Query: 347 AQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFS 406
             + L E+E  +V D W  L        D    G++HL+L +              P  +
Sbjct: 404 LLIDLVEVEKERVVDEWFTL--------DEATSGKLHLKLEW------------LTPKST 443

Query: 407 MTSLEKVLTNGEKALKSGANGTEA----IELEKDASQKRREVIIRGVLSVTVILAENLPA 462
             +L++VL + +       +G  A    + L+   S     + I         + +   A
Sbjct: 444 TENLDQVLKSIKADKDQANDGLSAALLILYLDSARSLPNNPLEINHDGMKKAAVEKAKKA 503

Query: 463 SDLMGKA-DPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD 521
              +G + +PYV+ ++    T  +++V      P+W QTF F V +     L  EV D +
Sbjct: 504 GKKIGSSPNPYVLFSV--GHTVQESKVKYKTAEPVWEQTFTFFVHNPKRQDLEVEVKDEN 561

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	549
356562953	565	PREDICTED: extended synaptotagmin-1-like	0.950	0.923	0.794	0.0
118484311	566	unknown [Populus trichocarpa]	0.952	0.924	0.796	0.0
224144112	566	plant synaptotagmin [Populus trichocarpa	0.952	0.924	0.794	0.0
255579863	558	calcium lipid binding protein, putative	0.938	0.922	0.8	0.0
449443041	567	PREDICTED: synaptotagmin-5-like [Cucumis	0.952	0.922	0.781	0.0
356562955	557	PREDICTED: extended synaptotagmin-1-like	0.936	0.922	0.784	0.0
224120508	566	plant synaptotagmin [Populus trichocarpa	0.952	0.924	0.784	0.0
357478297	566	Synaptotagmin-1 [Medicago truncatula] gi	0.927	0.899	0.782	0.0
225446229	567	PREDICTED: extended synaptotagmin-1 [Vit	0.952	0.922	0.786	0.0
186478159	560	calcium-dependent lipid-binding domain-c	0.941	0.923	0.749	0.0

>gi|356562953|ref|XP_003549732.1| PREDICTED: extended synaptotagmin-1-like isoform 1 [Glycine max]

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/530 (79%), Positives = 474/530 (89%), Gaps = 8/530 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF FG+VVG++VGL IIVGFVR EN+R+  RS+LATT+AAFARMTVEDS+KILP +FYP
Sbjct: 1   MGFIFGVVVGIIVGLAIIVGFVRGENSRAAQRSQLATTVAAFARMTVEDSRKILPPQFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS  QKL+WLN HL K+WPYVNEAASELIK+SVEP+LE+YRP +L++LKFSKFTLG
Sbjct: 61  SWVVFSSSQKLSWLNSHLTKIWPYVNEAASELIKASVEPILEEYRPVVLAALKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGG GVTMELEMQWD N SIIL IKT LGVALPVQVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIILDIKTLLGVALPVQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLVDEFPGF AVSYSLR+KKKLDF LKV+GGDIS IPGL D+IE  I DA+EDSITW
Sbjct: 181 IFKPLVDEFPGFGAVSYSLRQKKKLDFTLKVIGGDISAIPGLYDAIEGAIRDAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKP G LEVKLVQAK LTNKD+IGKSDPYAV+++RPL E+ KK
Sbjct: 241 PVRKVVPILPGDYSDLELKPEGILEVKLVQAKELTNKDIIGKSDPYAVVYIRPLRERMKK 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQH+ V++YD EG+QSSELIGCAQ++L EL+PGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDVSTQHVTVKVYDSEGLQSSELIGCAQLQLSELQPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL++QRDTK RGQVHLELLYCPFGMEN FTNPFAPN+SMTSLEKVL N    
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGQVHLELLYCPFGMENSFTNPFAPNYSMTSLEKVLKN---- 416

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
               ANG E+   E   +QK++EVIIRGVLSVTVI AE+LPA+D MGK+DP+VVLT+KK+
Sbjct: 417 ----ANGVESNGNENAVTQKKKEVIIRGVLSVTVISAEDLPATDFMGKSDPFVVLTLKKA 472

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
           ET+NKTRVVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGK Y+ R
Sbjct: 473 ETKNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGR 522

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484311|gb|ABK94033.1| unknown [Populus trichocarpa]

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/530 (79%), Positives = 469/530 (88%), Gaps = 7/530 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FF GL+ GL VGL +IVGFV+SENARSKLRSELATTIAAFARMTV+DS+KILPAEFYP
Sbjct: 1   MSFFVGLIFGLAVGLALIVGFVKSENARSKLRSELATTIAAFARMTVDDSRKILPAEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN HL K+WPYV++AAS LIK+S+EPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKTSLEPVLEQYRPVILSSLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTR GV+LPVQVK+IGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILGIKTRFGVSLPVQVKDIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV EFP F A+ YSLR+KKK+DF LKV+GGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVPEFPCFGAICYSLRQKKKMDFTLKVIGGDISAIPGLDDAIQETIRNAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK 
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKNLTNKDLIGKSDPFAKLYIRPLPDKTKT 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SK INNDLNPIWNEHFEF+VED STQHLVV++YDDEG+Q+SEL+GCAQV+L ELEPGKVK
Sbjct: 301 SKIINNDLNPIWNEHFEFVVEDASTQHLVVKVYDDEGLQASELLGCAQVKLSELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL+VQRD K RGQVHLELLYCPFG+EN   NPF+ +FSMTSLEKV       
Sbjct: 361 DVWLKLVKDLEVQRDNKNRGQVHLELLYCPFGVENGLVNPFSSDFSMTSLEKV------- 413

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
           LKSG NGT  I    + +QKRREVIIRGVL+VTVI AE+LP  DLMGKADP+V LTMKKS
Sbjct: 414 LKSGENGTGVIGNGNEVTQKRREVIIRGVLAVTVISAEDLPMVDLMGKADPFVTLTMKKS 473

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
           E RNKTRVVN+CLNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGK Y+ R
Sbjct: 474 EMRNKTRVVNNCLNPVWNQTFDFVVEDGLHDMLIIEVWDHDTFGKDYMGR 523

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144112|ref|XP_002325190.1| plant synaptotagmin [Populus trichocarpa] gi|222866624|gb|EEF03755.1| plant synaptotagmin [Populus trichocarpa]

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/530 (79%), Positives = 469/530 (88%), Gaps = 7/530 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FF GL+ GL VGL +IVGFV+SENARSKLRSELATTIAAFARMTV+DS+KILPAEFYP
Sbjct: 1   MSFFVGLIFGLAVGLALIVGFVKSENARSKLRSELATTIAAFARMTVDDSRKILPAEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN HL K+WPYV++AAS LIK+S+EPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKASLEPVLEQYRPVILSSLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTR GV+LPVQVK+IGFTGVF+L
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILGIKTRFGVSLPVQVKDIGFTGVFKL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV EFP F A+ YSLR+KKK+DF LKV+GGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVPEFPCFGAICYSLRQKKKMDFTLKVIGGDISAIPGLDDAIQETIRNAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK 
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKDLTNKDLIGKSDPFAKLYIRPLPDKTKT 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SK INNDLNPIWNEHFEF+VED STQHLVV++YDDEG+Q+SEL+GCAQV+L ELEPGKVK
Sbjct: 301 SKIINNDLNPIWNEHFEFVVEDASTQHLVVKVYDDEGLQASELLGCAQVKLSELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL+VQRD K RGQVHLELLYCPFG+EN   NPF+ +FSMTSLEKV       
Sbjct: 361 DVWLKLVKDLEVQRDNKNRGQVHLELLYCPFGVENGLVNPFSSDFSMTSLEKV------- 413

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
           LKSG NGT  I    + +QKRREVIIRGVL+VTVI AE+LP  DLMGKADP+V LTMKKS
Sbjct: 414 LKSGENGTGVIGNGNEVAQKRREVIIRGVLAVTVISAEDLPMVDLMGKADPFVTLTMKKS 473

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
           E RNKTRVVN+CLNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGK Y+ R
Sbjct: 474 EMRNKTRVVNNCLNPVWNQTFDFVVEDGLHDMLIIEVWDHDTFGKDYMGR 523

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579863|ref|XP_002530768.1| calcium lipid binding protein, putative [Ricinus communis] gi|223529684|gb|EEF31628.1| calcium lipid binding protein, putative [Ricinus communis]

 Score =  875 bits (2261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/530 (80%), Positives = 467/530 (88%), Gaps = 15/530 (2%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FFFGLV+GL VGL I+VGFV+SENARSK RSELA T+AAFARMTVEDS+KILP+EFYP
Sbjct: 1   MSFFFGLVIGLAVGLAIVVGFVKSENARSKRRSELARTVAAFARMTVEDSRKILPSEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SW        LTWLN HL K+WPYVNEAASELIK+SVEPVLEQYRP ILSSLKFSK TLG
Sbjct: 61  SW--------LTWLNLHLTKIWPYVNEAASELIKASVEPVLEQYRPIILSSLKFSKLTLG 112

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SI+L IKTRLGV+LPVQVKNIGFTGVFRL
Sbjct: 113 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIVLDIKTRLGVSLPVQVKNIGFTGVFRL 172

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV+EFP F AV +SLR+KKKLDF LKV+GGDISTIPG+ D+IE TI DAIEDSITW
Sbjct: 173 IFKPLVNEFPCFGAVCFSLRQKKKLDFTLKVIGGDISTIPGIYDAIEGTIRDAIEDSITW 232

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK++PILPGDYS+LELKPVG LEVKLVQAK LTNKD+IGKSDPYA L++RP+ ++ K 
Sbjct: 233 PVRKVIPILPGDYSDLELKPVGMLEVKLVQAKELTNKDIIGKSDPYAELYIRPIRDRIKT 292

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEFIVED STQHLVV+I+DDEG+QSSELIGCAQV+LCEL+PGKVK
Sbjct: 293 SKTINNDLNPIWNEHFEFIVEDASTQHLVVKIFDDEGLQSSELIGCAQVQLCELQPGKVK 352

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL+VQRD + RGQVHLELLYCPFGMEN F NPFAP FSMTSLEKV       
Sbjct: 353 DVWLKLVKDLEVQRDNRNRGQVHLELLYCPFGMENGFKNPFAPTFSMTSLEKV------- 405

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
           LK G +G E  E  +  +Q+RR+VI+RGVLSVTVI AE+LP  DLMGKADPYVVLTMKKS
Sbjct: 406 LKGGVDGMEITENGQAGTQRRRDVIVRGVLSVTVISAEDLPVVDLMGKADPYVVLTMKKS 465

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
           ETRNKTRVVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGK Y+ R
Sbjct: 466 ETRNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLILEVWDHDTFGKDYMGR 515

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443041|ref|XP_004139289.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus] gi|449517890|ref|XP_004165977.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus]

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/531 (78%), Positives = 471/531 (88%), Gaps = 8/531 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M F  GLV+GL VGLG++VGFV+SENARSK R++LA TIAAFARMTVEDS+K+LP ++YP
Sbjct: 1   MAFVLGLVLGLFVGLGLVVGFVKSENARSKRRADLAATIAAFARMTVEDSRKLLPPQYYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLN HL K+WPYVNEAAS+LIK+SVEPVLEQYRP ILSSLKFS+FTLG
Sbjct: 61  SWVVFSQRQKLTWLNQHLTKIWPYVNEAASDLIKASVEPVLEQYRPIILSSLKFSRFTLG 120

Query: 121 TVAPQFTGVSIIEDGGS-GVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
           TVAPQ TG+SIIEDGG+ G+TME EMQWD N SIIL IKTRLGVALPVQVKN+GFTGVFR
Sbjct: 121 TVAPQLTGISIIEDGGTDGITMEFEMQWDGNQSIILDIKTRLGVALPVQVKNLGFTGVFR 180

Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
           LIF+PLVDEFP F AV +SLR+KKKLDF LKV+GGDIS IPGL  ++E TI DA+EDSIT
Sbjct: 181 LIFKPLVDEFPCFGAVCFSLRQKKKLDFTLKVIGGDISAIPGLYSALEGTIRDAVEDSIT 240

Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
           WPVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKD+IGKSDPYA L++RPL ++ K
Sbjct: 241 WPVRKVIPIIPGDYSDLELKPVGILEVKLVQAKELTNKDVIGKSDPYAELYIRPLRDRMK 300

Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
            SK INNDLNP+WNEHFEF+VEDESTQHLVV++YDDEG+Q+SELIGCAQ++L EL+PGKV
Sbjct: 301 TSKIINNDLNPVWNEHFEFVVEDESTQHLVVKVYDDEGLQASELIGCAQIQLSELQPGKV 360

Query: 360 KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEK 419
           KDVWLKLVKDL+V RD K RGQVHLELLYCPFGMEN FTNPFA +F MTSLE V      
Sbjct: 361 KDVWLKLVKDLEVIRDNKNRGQVHLELLYCPFGMENGFTNPFASDFRMTSLESV------ 414

Query: 420 ALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK 479
            LK+ ANGTEA E E+  +QKR+EVIIRGVLSVTVI AE+LPA+DL+GK+DPYVVLTMKK
Sbjct: 415 -LKNRANGTEATESEQAVTQKRKEVIIRGVLSVTVISAEDLPATDLVGKSDPYVVLTMKK 473

Query: 480 SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
           S  +NKTRVVN+ LNPIWNQTFDFVVEDGLHDMLI EVWDHDTFGK Y+ R
Sbjct: 474 SGMKNKTRVVNESLNPIWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGR 524

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562955|ref|XP_003549733.1| PREDICTED: extended synaptotagmin-1-like isoform 2 [Glycine max]

 Score =  868 bits (2243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/530 (78%), Positives = 468/530 (88%), Gaps = 16/530 (3%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF FG+VVG++VGL IIVGFVR EN+R+  RS+LATT+AAFARMTVEDS+KILP +FYP
Sbjct: 1   MGFIFGVVVGIIVGLAIIVGFVRGENSRAAQRSQLATTVAAFARMTVEDSRKILPPQFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SW        LTWLN HL K+WPYVNEAASELIK+SVEP+LE+YRP +L++LKFSKFTLG
Sbjct: 61  SW--------LTWLNSHLTKIWPYVNEAASELIKASVEPILEEYRPVVLAALKFSKFTLG 112

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGG GVTMELEMQWD N SIIL IKT LGVALPVQVKNIGFTGVFRL
Sbjct: 113 TVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIILDIKTLLGVALPVQVKNIGFTGVFRL 172

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLVDEFPGF AVSYSLR+KKKLDF LKV+GGDIS IPGL D+IE  I DA+EDSITW
Sbjct: 173 IFKPLVDEFPGFGAVSYSLRQKKKLDFTLKVIGGDISAIPGLYDAIEGAIRDAVEDSITW 232

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKP G LEVKLVQAK LTNKD+IGKSDPYAV+++RPL E+ KK
Sbjct: 233 PVRKVVPILPGDYSDLELKPEGILEVKLVQAKELTNKDIIGKSDPYAVVYIRPLRERMKK 292

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQH+ V++YD EG+QSSELIGCAQ++L EL+PGKVK
Sbjct: 293 SKTINNDLNPIWNEHFEFVVEDVSTQHVTVKVYDSEGLQSSELIGCAQLQLSELQPGKVK 352

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL++QRDTK RGQVHLELLYCPFGMEN FTNPFAPN+SMTSLEKVL N    
Sbjct: 353 DVWLKLVKDLEIQRDTKNRGQVHLELLYCPFGMENSFTNPFAPNYSMTSLEKVLKN---- 408

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
               ANG E+   E   +QK++EVIIRGVLSVTVI AE+LPA+D MGK+DP+VVLT+KK+
Sbjct: 409 ----ANGVESNGNENAVTQKKKEVIIRGVLSVTVISAEDLPATDFMGKSDPFVVLTLKKA 464

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
           ET+NKTRVVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGK Y+ R
Sbjct: 465 ETKNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGR 514

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120508|ref|XP_002331065.1| plant synaptotagmin [Populus trichocarpa] gi|222872995|gb|EEF10126.1| plant synaptotagmin [Populus trichocarpa]

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/530 (78%), Positives = 464/530 (87%), Gaps = 7/530 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FF GL++GL VGL +IVGFV+SENARSKLRSELA  IAAFARMTVEDS+KILPAE+YP
Sbjct: 1   MSFFVGLIIGLAVGLALIVGFVKSENARSKLRSELAIAIAAFARMTVEDSRKILPAEYYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKL WLN HL K+WPYV++AAS LIK SVEPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKDSVEPVLEQYRPIILSSLKFSKFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTRLGV+LPVQVK+IGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILDIKTRLGVSLPVQVKDIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IF+PLV EFP F AV  SLR+KKK+DFKLKVVGGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVAEFPCFGAVCCSLRQKKKMDFKLKVVGGDISAIPGLDDAIQETIQNAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK 
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKDLTNKDLIGKSDPFAKLYIRPLPDKTKT 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           +K INNDLNPIWNEHFEF+VED +TQHLVV+IYDDEGIQ++EL+GCAQV+L ELEPGKVK
Sbjct: 301 TKIINNDLNPIWNEHFEFVVEDATTQHLVVKIYDDEGIQAAELLGCAQVKLNELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           D+WLKLVKDL+VQRD K RGQVHLELLY PFGMEN   N FA +FSMTSLEKVL NG  +
Sbjct: 361 DLWLKLVKDLEVQRDNKNRGQVHLELLYRPFGMENGLGNSFASSFSMTSLEKVLKNGANS 420

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
           ++   N  E        ++KRREVI+RGVLS+TVI AE+LP  DLMGKADP+V LTMKKS
Sbjct: 421 MEITGNVNE-------VTKKRREVIVRGVLSITVISAEDLPVVDLMGKADPFVTLTMKKS 473

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
           E RNKTRVVN+ LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGK Y+ R
Sbjct: 474 EMRNKTRVVNNNLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGR 523

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478297|ref|XP_003609434.1| Synaptotagmin-1 [Medicago truncatula] gi|355510489|gb|AES91631.1| Synaptotagmin-1 [Medicago truncatula]

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/516 (78%), Positives = 461/516 (89%), Gaps = 7/516 (1%)

Query: 15  LGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWL 74
           L II+ FVRSEN+RS  RS+LATTIAAFARMTVEDS+K+LP++FYPSWVVFS+RQKLTWL
Sbjct: 15  LAIIIAFVRSENSRSARRSQLATTIAAFARMTVEDSRKLLPSQFYPSWVVFSNRQKLTWL 74

Query: 75  NHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED 134
           N HL K+WPYVNEAASELIK+S EP+LE+YRP ILS+LKFSKFTLGTVAPQFTGVSIIED
Sbjct: 75  NSHLTKIWPYVNEAASELIKTSAEPILEEYRPMILSALKFSKFTLGTVAPQFTGVSIIED 134

Query: 135 GGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAA 194
           GG GVTMELE+QWD N SIIL IKT +G+ALPVQVKN+GFTGVFRLIF+PLV+EFPGF A
Sbjct: 135 GGDGVTMELEVQWDGNPSIILDIKTLVGLALPVQVKNVGFTGVFRLIFKPLVNEFPGFGA 194

Query: 195 VSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYS 254
           V YSLR+KKKLDF LKV+GGDISTIPGL D+IE  I DA+EDSITWPVRKIVPILPGDYS
Sbjct: 195 VCYSLRQKKKLDFTLKVIGGDISTIPGLYDAIEGAIRDAVEDSITWPVRKIVPILPGDYS 254

Query: 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNE 314
           +LELKPVG LEVKLVQAK LTNKD+IGKSDPYAVL++RPL  +TKKSKTINNDLNPIWNE
Sbjct: 255 DLELKPVGILEVKLVQAKELTNKDIIGKSDPYAVLYIRPLRNRTKKSKTINNDLNPIWNE 314

Query: 315 HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQR 374
           HFEFIVED STQHL V++YDDEG+QSSELIGC  ++L ELEPGK+KDVWLKLVKDL++QR
Sbjct: 315 HFEFIVEDASTQHLFVKVYDDEGLQSSELIGCTDIKLSELEPGKIKDVWLKLVKDLEIQR 374

Query: 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELE 434
           D K RGQVHLELLYCP+G EN FTNPFA N+SMTSLEKV       LK  +NG ++   E
Sbjct: 375 DNKNRGQVHLELLYCPYGTENSFTNPFARNYSMTSLEKV-------LKGSSNGIDSNGNE 427

Query: 435 KDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLN 494
            +A+Q+++EVIIRGVLSVTVI AE+LPA D MGK+DP+VVLT+KK+ET+NKTRVVN+ LN
Sbjct: 428 SEAAQRKKEVIIRGVLSVTVISAEDLPAVDFMGKSDPFVVLTLKKAETKNKTRVVNNSLN 487

Query: 495 PIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
           P+WNQTFDFVVEDGLHDML+ EV+DHDTFGK Y+ R
Sbjct: 488 PVWNQTFDFVVEDGLHDMLLVEVYDHDTFGKDYMGR 523

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446229|ref|XP_002265034.1| PREDICTED: extended synaptotagmin-1 [Vitis vinifera] gi|296084522|emb|CBI25543.3| unnamed protein product [Vitis vinifera]

 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/530 (78%), Positives = 465/530 (87%), Gaps = 7/530 (1%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           M FF GLV+G+ VG+G+IV FVRSEN RSK RS LATT+AA ARMTVEDS+KILP++FYP
Sbjct: 1   MSFFLGLVIGITVGIGLIVLFVRSENIRSKQRSALATTVAALARMTVEDSRKILPSKFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLNHHL K+WPYVNEAASELI+++VEP+LEQYRP ILSSLKFS+FTLG
Sbjct: 61  SWVVFSQRQKLTWLNHHLTKIWPYVNEAASELIRTNVEPILEQYRPMILSSLKFSRFTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TV+PQFTGVSIIEDG   +T+ELE+QWD N SIIL I TRLGVALPVQVKNIGFTGVFRL
Sbjct: 121 TVSPQFTGVSIIEDGADCITLELELQWDGNPSIILDINTRLGVALPVQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           +F+PLVDEFP F AV +SLR+KKKLD  LKVVGGDIS IPG+SD+I+ TI +AIEDSI W
Sbjct: 181 MFKPLVDEFPCFGAVCFSLRQKKKLDLTLKVVGGDISAIPGISDAIKDTIDNAIEDSIMW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK+VPILPGDYS+LELKPVGTLEVKLVQAK LTNKD+IGKSDP+AVL+VRPLP + K 
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGTLEVKLVQAKELTNKDIIGKSDPFAVLYVRPLPNRMKT 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINN LNP+WNEHFEFIVED STQHLVV+IYD+EG+Q+SELIGCAQV+L ELEPGKVK
Sbjct: 301 SKTINNQLNPVWNEHFEFIVEDASTQHLVVKIYDNEGLQASELIGCAQVQLRELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           D W KLVKDL+VQRDTK RGQVHLELLY PFGMEN FTNPFAP FSMTSLEKV       
Sbjct: 361 DAWWKLVKDLEVQRDTKNRGQVHLELLYVPFGMENGFTNPFAPKFSMTSLEKV------- 413

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
           LK+G +GTE  E      QK+REVI+RGVLS+TVI AE+LP  DLMGKADPYVVL +KKS
Sbjct: 414 LKNGVDGTEVAENGNAVMQKKREVIVRGVLSITVISAEDLPVVDLMGKADPYVVLILKKS 473

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
           E RNKTRVVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGK Y+ R
Sbjct: 474 EIRNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLILEVWDHDTFGKDYMGR 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478159|ref|NP_172041.2| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|75301121|sp|Q8L706.1|SYT5_ARATH RecName: Full=Synaptotagmin-5; AltName: Full=NTMC2T2.1; AltName: Full=Synaptotagmin E gi|22655178|gb|AAM98179.1| Ca2+-dependent lipid-binding protein, putative [Arabidopsis thaliana] gi|31711980|gb|AAP68346.1| At1g05500 [Arabidopsis thaliana] gi|110737090|dbj|BAF00497.1| putative Ca2+-dependent lipid-binding protein [Arabidopsis thaliana] gi|332189725|gb|AEE27846.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/530 (74%), Positives = 462/530 (87%), Gaps = 13/530 (2%)

Query: 1   MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
           MGF  G+V+GL+VG+ II+GFV+ EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYP
Sbjct: 1   MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query: 61  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
           SWVVFS RQKLTWLNHHL K+WPYV+EAASELIK+SVEPVLEQYRP I++SL FSK TLG
Sbjct: 61  SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
           TVAPQFTGVS+I+   +G+T+EL+MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
           IFRPLV++FP F AVS SLREKKKLDF LKVVGGDIS IPGLS++IE TI DA+EDSITW
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240

Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
           PVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           SKTINNDLNPIWNEHFEF+VED STQHLVVRIYDDEG+Q+SELIGCAQ+RLCELEPGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360

Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
           DVWLKLVKDL++QRDTK RG+VHLELLY P+G  N   NPF  + SMTSLE+VL N    
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVTS-SMTSLERVLKN---- 415

Query: 421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS 480
                   +  + E  +S+KR++VI+RGVLSVTVI AE +P  DLMGKADPYVVL+MKKS
Sbjct: 416 --------DTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKS 467

Query: 481 ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
             ++KTRVVND LNP+WNQTFDFVVEDGLHDML+ EVWDHDTFGK Y+ R
Sbjct: 468 GAKSKTRVVNDSLNPVWNQTFDFVVEDGLHDMLVLEVWDHDTFGKDYIGR 517

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	549
TAIR|locus:2201036	560	NTMC2T2.1 "AT1G05500" [Arabido	0.897	0.880	0.731	1.2e-200
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.912	0.880	0.688	5.4e-189
TAIR|locus:2100992	510	NTMC2T4 [Arabidopsis thaliana	0.657	0.707	0.399	2.7e-68
TAIR|locus:2146688	540	SYTC "AT5G04220" [Arabidopsis	0.748	0.761	0.3	1.4e-56
TAIR|locus:2198581	537	SYTB "AT1G20080" [Arabidopsis	0.622	0.636	0.324	9.9e-52
WB|WBGene00020443	713	esyt-2 [Caenorhabditis elegans	0.530	0.408	0.290	1.2e-36
UNIPROTKB|Q9BSJ8	1104	ESYT1 "Extended synaptotagmin-	0.542	0.269	0.287	5e-32
MGI|MGI:1098699	891	Esyt3 "extended synaptotagmin-	0.568	0.350	0.286	1.5e-30
RGD|3053	1088	Esyt1 "extended synaptotagmin-	0.520	0.262	0.293	1e-29
FB|FBgn0039208	849	Esyt2 [Drosophila melanogaster	0.575	0.372	0.280	2.1e-29

TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 1942 (688.7 bits), Expect = 1.2e-200, P = 1.2e-200
 Identities = 370/506 (73%), Positives = 427/506 (84%)

Query:    25 ENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPY 84
             EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYPSWVVFS RQKLTWLNHHL K+WPY
Sbjct:    25 ENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYPSWVVFSERQKLTWLNHHLTKIWPY 84

Query:    85 VNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELE 144
             V+EAASELIK+SVEPVLEQYRP I++SL FSK TLGTVAPQFTGVS+I+   +G+T+EL+
Sbjct:    85 VDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLGTVAPQFTGVSVIDGDKNGITLELD 144

Query:   145 MQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKK 204
             MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRLIFRPLV++FP F AVS SLREKKK
Sbjct:   145 MQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRLIFRPLVEDFPCFGAVSVSLREKKK 204

Query:   205 LDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTL 264
             LDF LKVVGGDIS IPGLS++IE TI DA+EDSITWPVRK++PI+PGDYS+LELKPVG L
Sbjct:   205 LDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITWPVRKVIPIIPGDYSDLELKPVGML 264

Query:   265 EVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES 324
             EVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+SKTINNDLNPIWNEHFEF+VED S
Sbjct:   265 EVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDAS 324

Query:   325 TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYRGQVHL 384
             TQHLVVRIYDDEG+Q+SELIGCAQ+RLCELEPG               QRDTK RG+VHL
Sbjct:   325 TQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHL 384

Query:   385 ELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREV 444
             ELLY P+G  N   NPF  + SMTSLE+VL N            +  + E  +S+KR++V
Sbjct:   385 ELLYIPYGSGNGIVNPFVTS-SMTSLERVLKN------------DTTDEENASSRKRKDV 431

Query:   445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFV 504
             I+RGVLSVTVI AE +P  DLMGKADPYVVL+MKKS  ++KTRVVND LNP+WNQTFDFV
Sbjct:   432 IVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVNDSLNPVWNQTFDFV 491

Query:   505 VEDGLHDMLIAEVWDHDTFGKRYLSR 530
             VEDGLHDML+ EVWDHDTFGK Y+ R
Sbjct:   492 VEDGLHDMLVLEVWDHDTFGKDYIGR 517

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0012505 "endomembrane system" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 1832 (650.0 bits), Expect = 5.4e-189, P = 5.4e-189
 Identities = 351/510 (68%), Positives = 418/510 (81%)

Query:    23 RSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLW 82
             R  + RS  R++LA TIAAFARMTV+DS+K+LP +FYPSWVVFS RQKL WLN  LEK+W
Sbjct:    23 RYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYPSWVVFSQRQKLNWLNLELEKIW 82

Query:    83 PYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVT 140
             PYVNEAASELIKSSVEPVLEQY P +L+SLKFSKFTLGTVAPQFTGVSI+E   G +G+T
Sbjct:    83 PYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLGTVAPQFTGVSILESESGPNGIT 142

Query:   141 MELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLR 200
             MELEMQWD N  I+L +KT LGV+LP++VKNIGFTGVFRLIF+PLVDEFP F A+SYSLR
Sbjct:   143 MELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVFRLIFKPLVDEFPCFGALSYSLR 202

Query:   201 EKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKP 260
             EKK LDF LKV+GG++++IPG+SD+IE TI DAIEDSITWPVRKI+PILPGDYS+LELKP
Sbjct:   203 EKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSITWPVRKIIPILPGDYSDLELKP 262

Query:   261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
             VG L+VK+VQAK L NKD+IGKSDPYA++F+RPLP++TKK+KTI+N LNPIWNEHFEFIV
Sbjct:   263 VGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIV 322

Query:   321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYRG 380
             ED STQHL VR++DDEG+ SS+LIG AQV L EL PG               QRDTK RG
Sbjct:   323 EDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGKVKDIWLKLVKDLEIQRDTKNRG 382

Query:   381 QVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQK 440
             QV LELLYCP G E    NPF P++S+T LEKVL       K  +  ++A +++K  + K
Sbjct:   383 QVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVL-------KPESEDSDATDMKKLVTSK 435

Query:   441 RREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQT 500
             +++VI+RGVLSVTV+ AE+LPA D MGKAD +VV+T+KKSET++KTRVV D LNP+WNQT
Sbjct:   436 KKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKSKTRVVPDSLNPVWNQT 495

Query:   501 FDFVVEDGLHDMLIAEVWDHDTFGKRYLSR 530
             FDFVVED LHD+L  EVWDHD FGK  + R
Sbjct:   496 FDFVVEDALHDLLTLEVWDHDKFGKDKIGR 525

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 149/373 (39%), Positives = 225/373 (60%)

Query:    28 RSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNE 87
             RS  R   A  +     ++ +D KKI    F P W+ F   +++ WLN  L K+WPY+ E
Sbjct:    28 RSSKRVAKAVDMKLLGSLSRDDLKKICGDNF-PQWISFPAFEQVKWLNKLLSKMWPYIAE 86

Query:    88 AASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQW 147
             AA+ +I+ SVEP+LE YRP  ++SLKFSK TLG VAP+  G+ +       VTM+++++W
Sbjct:    87 AATMVIRDSVEPLLEDYRPPGITSLKFSKLTLGNVAPKIEGIRVQSFKEGQVTMDVDLRW 146

Query:   148 DANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSL--REKKKL 205
               + +I+L + T L  ++P+Q+K++    V R+IF+ L DE P  +AV  +L    K ++
Sbjct:   147 GGDPNIVLGV-TALVASIPIQLKDLQVFTVARVIFQ-LADEIPCISAVVVALLAEPKPRI 204

Query:   206 DFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPI--LPGDYSELELKPVGT 263
             D+ LK VGG ++ IPGLSD I+ T+   ++D + WP R +VPI  +P D S+LELKP G 
Sbjct:   205 DYTLKAVGGSLTAIPGLSDMIDDTVDTIVKDMLQWPHRIVVPIGGIPVDLSDLELKPQGK 264

Query:   264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
             L V +V+A  L NK+LIGKSDPYA +++RP+ +   K+K I N+LNP+W++ FE I ED+
Sbjct:   265 LIVTVVKATNLKNKELIGKSDPYATIYIRPVFKY--KTKAIENNLNPVWDQTFELIAEDK 322

Query:   324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQR--DTKYRGQ 381
              TQ L V ++D + +   E +G  ++ L  LE G                +  D K RG 
Sbjct:   323 ETQSLTVEVFDKD-VGQDERLGLVKLPLSSLEAGVTKELELNLLSSLDTLKVKDKKDRGS 381

Query:   382 VHLELLYCPFGME 394
             + L++ Y  F  E
Sbjct:   382 ITLKVHYHEFNKE 394

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008289 "lipid binding" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
 Identities = 126/420 (30%), Positives = 209/420 (49%)

Query:    43 ARMTVEDSKKILPAEF--YPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPV 100
             AR  VE S  +L       P W+     +++ W N  +  +WPY+++A   +I+SSV+P+
Sbjct:    41 ARPLVETSISVLLDLLPDIPLWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPL 100

Query:   101 LEQY-RPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKT 159
                Y   F + S++F   +LGT+ P   GV   E     +  E  ++W  N +I+L +K 
Sbjct:   101 FADYIGTFCIESIEFENLSLGTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKV 160

Query:   160 RLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTI 219
              L + + VQ+ ++ F  + R+  +PL+  FP F  V  SL EK  +DF LKV+GGD+ +I
Sbjct:   161 -LSLRIRVQLVDLQFFAIVRVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSI 219

Query:   220 PGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDL 279
             PGL   ++ TI   +     WP    +PIL    + ++ KPVG L V +++A+ L  KDL
Sbjct:   220 PGLYRYVQETIKRQVSSMYHWPQVLEIPILDSSTASVK-KPVGLLHVSILRARNLLKKDL 278

Query:   280 IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339
             +G SDPY  L +       KK+     +LNP WNEHF+ IV+D ++Q L + ++D + + 
Sbjct:   279 LGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVG 338

Query:   340 SSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDT---KYRGQVHLELLYCPFGMENV 396
               + +G   + L ++ PG                 D+   K RG++ ++L Y PF  E++
Sbjct:   339 GHDRLGMQMIPLQKINPGERKEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESI 398

Query:   397 FTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVIL 456
                  +     +  +  L+     L       + +E +K  S     V+ RG    T +L
Sbjct:   399 KRRKESREEKSSEDDDFLSQAG-LLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKML 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
 Identities = 113/348 (32%), Positives = 184/348 (52%)

Query:    60 PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL-EQYRPFILSSLKFSKFT 118
             P WV      ++ WLN  +  +WPY+++A  ++ KS  +P++ EQ   + + S++F   T
Sbjct:    60 PMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLT 119

Query:   119 LGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178
             LG++ P F G+ +       + MEL ++W  N +II+  K   G+   VQV ++      
Sbjct:   120 LGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKA-FGLKATVQVIDLQVYATP 178

Query:   179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSI 238
             R+  +PLV  FP FA +  SL +K ++DF LK++G D+  IPGL   ++  I D + +  
Sbjct:   179 RITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMY 238

Query:   239 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT 298
              WP    V I+  D S+   KPVG L VK+++A  L  KDL+G SDPY  L +       
Sbjct:   239 LWPKTLNVQIM--DPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPG 296

Query:   299 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGX 358
             KK+   +++LNP WNE F+ +V++  +Q L + +YD E +   + IG   ++L +L P  
Sbjct:   297 KKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEE 356

Query:   359 XXXXXXXXXXXXXXQRDT--KYRGQVHLELLYCPFGMENVFTNPFAPN 404
                           +     K RGQ+ +E+ Y PF  +++  N   PN
Sbjct:   357 PKLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPN 404

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009306 "protein secretion" evidence=IMP

WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 379 (138.5 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 90/310 (29%), Positives = 164/310 (52%)

Query:    44 RMTVEDSKKILPAEFY--PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL 101
             R T    ++++ A+    P+WV F   +++ WLN  + +LWPYV E     +   + P +
Sbjct:    58 RATALREREVIMAQLQDLPAWVQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQV 117

Query:   102 EQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVTMELEMQWDANSSIILAIKT 159
             +   P +  + KF+K  +G +  +  G+ +     G   + +++++ +  ++   ++   
Sbjct:   118 KAQMPGMFKNFKFTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVSCCG 177

Query:   160 RLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTI 219
               G      + NI F+G  R I +PL+   P    VS +  E  K+DF L  +G ++  +
Sbjct:   178 FTG-----GMNNIQFSGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMVEL 231

Query:   220 PGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELEL-KPVGTLEVKLVQAKGLTNK 277
             PGL D+I + I+  I      P   +VP+ P  D ++L   +P G + +K+++AK L N+
Sbjct:   232 PGLIDAIRSVINSQIAALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLENR 291

Query:   278 DLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 333
             D+     GKSDPYA + V     +  K++TI++DLNPIWNE+FE +V+    Q L + ++
Sbjct:   292 DISFIKKGKSDPYAEIQVG---SQFFKTRTIDDDLNPIWNEYFEAVVDQADGQKLRIELF 348

Query:   334 DDEGIQSSEL 343
             D++  +  EL
Sbjct:   349 DEDQGKDEEL 358

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|Q9BSJ8 ESYT1 "Extended synaptotagmin-1" [Homo sapiens (taxid:9606)]

 Score = 318 (117.0 bits), Expect = 5.0e-32, Sum P(2) = 5.0e-32
 Identities = 93/323 (28%), Positives = 161/323 (49%)

Query:    30 KLRSELATTIAAFARMTVEDSKKILPAEFY------PSWVVFSHRQKLTWLNHHLEKLWP 83
             ++R E   ++ A AR  ++D +++     Y      P+WV F   +K  WLN  + ++WP
Sbjct:    93 RVRDEKERSLRA-ARQLLDDEEQLTAKTLYMSHRELPAWVSFPDVEKAEWLNKIVAQVWP 151

Query:    84 YVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIE-DGGSGVTME 142
             ++ +   +L+  +V P +    P  L +  F++  LG    +  GV +        + ++
Sbjct:   152 FLGQYMEKLLAETVAPAVRGSNPH-LQTFTFTRVELGEKPLRIIGVKVHPGQRKEQILLD 210

Query:   143 LEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREK 202
             L + +  +  I + +K     A    VK +   GV R+I  PL+ + P   AVS     +
Sbjct:   211 LNISYVGDVQIDVEVKKYFCKA---GVKGMQLHGVLRVILEPLIGDLPFVGAVSMFFIRR 267

Query:   203 KKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG--DYSELELK- 259
               LD     +  ++  IPGLS   +  I D+I   +  P R +VP++P   D ++L    
Sbjct:   268 PTLDINWTGMT-NLLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPL 326

Query:   260 PVGTLEVKLVQAKGLTNKD-----LI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
             P G + + L+ A+GL++KD     LI GKSDPYA+  VR L  +T  S+ I+ +LNP W 
Sbjct:   327 PRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYAL--VR-LGTQTFCSRVIDEELNPQWG 383

Query:   314 EHFEFIVEDESTQHLVVRIYDDE 336
             E +E +V +   Q + V ++D +
Sbjct:   384 ETYEVMVHEVPGQEIEVEVFDKD 406

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1098699 Esyt3 "extended synaptotagmin-like protein 3" [Mus musculus (taxid:10090)]

 Score = 323 (118.8 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
 Identities = 96/335 (28%), Positives = 167/335 (49%)

Query:    28 RSKLRSELATTIAAFARMTVEDS--KKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYV 85
             R   R +L    AAF  +  E     + L  +  P+W+ F   +++ W N  + ++WPY+
Sbjct:    77 RRNRRGKLGRLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWPYL 136

Query:    86 NEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG--VTMEL 143
             +      I+  +EP + + +   L +  F+K   G   P+  GV +  D  +   VT++L
Sbjct:   137 SMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDL 195

Query:   144 EMQWDANSSIILAI-KTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREK 202
             ++ +  +  I + + K R GV+  VQ++     G  R+I  PL+ + P   AV+    +K
Sbjct:   196 QICYIGDCEISVELQKIRGGVS-GVQLQ-----GTLRVILEPLLVDKPFIGAVTVFFLQK 249

Query:   203 KKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELELK-P 260
               L      +  ++  +PG+++  ++ + D I   +  P R  VP+  G D + L +  P
Sbjct:   250 PHLQINWTGLT-NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVTNLRVPLP 308

Query:   261 VGTLEVKLVQAKGLTNKD----LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
              G + V L++AK L  KD    L GKSDPYA + +     +  +S+TI  +LNP WNE F
Sbjct:   309 CGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGL---QHCRSRTIYKNLNPTWNEVF 365

Query:   317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
             EF+V +   Q L V +YD++     + +G  Q+ L
Sbjct:   366 EFMVYEVPGQDLEVDLYDED-TDKDDFLGSLQICL 399

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|3053 Esyt1 "extended synaptotagmin-like protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 316 (116.3 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
 Identities = 91/310 (29%), Positives = 155/310 (50%)

Query:    43 ARMTVEDSKKILPAEFY------PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSS 96
             AR  ++D ++I     Y      P+WV F   +K  WLN  + ++WP++ +   +L+  +
Sbjct:    97 ARQLLDDEERITAETLYMSHRELPAWVSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAET 156

Query:    97 VEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG-VTMELEMQWDANSSIIL 155
             V P +    P  L +  F++  LG    +  GV +        + ++L + +  +  I +
Sbjct:   157 VAPAVRGANPH-LQTFTFTRVELGEKPVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDV 215

Query:   156 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 215
              +K     A    VK +   GV R+I  PL+ + P   AVS    ++  LD     +  +
Sbjct:   216 EVKKYFCKA---GVKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIKRPTLDINWTGMT-N 271

Query:   216 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG--DYSELELK-PVGTLEVKLVQAK 272
             +  IPGLS   +  I D+I   +  P R +VP++P   D ++L    P G + + L+ A+
Sbjct:   272 LLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAAR 331

Query:   273 GLTNKD-----LI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQ 326
             GL++KD     LI GKSDPYA+  VR +  +T  S+ I+ +LNP W E +E IV +   Q
Sbjct:   332 GLSSKDKYVKGLIEGKSDPYAL--VR-VGTQTFCSRVIDEELNPHWGETYEVIVHEVPGQ 388

Query:   327 HLVVRIYDDE 336
              + V ++D +
Sbjct:   389 EIEVEVFDKD 398

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0039208 Esyt2 [Drosophila melanogaster (taxid:7227)]

 Score = 306 (112.8 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
 Identities = 96/342 (28%), Positives = 164/342 (47%)

Query:    27 ARSKLR--SELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPY 84
             AR +L   SE    IA  + +  E    +   +  P+WV F   ++  WLN  L+++WP 
Sbjct:   112 ARDQLAKTSEKKRDIAKASALASEKDVILARIDELPAWVYFPDVERCEWLNKILKQVWPN 171

Query:    85 VNEAASELIKSSVEP-VLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDG--GSGVTM 141
              N  A  L+K ++EP V      + +   +F +  LGT+ P+  GV I +     + + M
Sbjct:   172 ANHFARTLVKETIEPNVALALANYKMHGFRFDRIILGTIPPRIGGVKIYDKNVDRNEIIM 231

Query:   142 ELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLRE 201
             +L++ + ++  I       LG  +   +K+    G  R++ +PL+   P    +      
Sbjct:   232 DLDLFYASDCDI----NFYLG-GMKGGIKDFQIHGWVRVVMKPLIRSMPLVGGLQIFFLN 286

Query:   202 KKKLDFKLKVVGG-DISTIPGLSDSIEATIHDAIEDSITWPVRKIVPI-LPGDYSELELK 259
                +DF L  VG  D   +PGLSD +   I + I + +  P +  +PI L  + S + LK
Sbjct:   287 NPNIDFNL--VGVIDFMDMPGLSDLLRRIIVEQIGNVMVLPNK--LPISLSEEVSAVALK 342

Query:   260 ---PVGTLEVKLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIW 312
                P G L + +V+AK L  KD+     GKSDPYA++ V     KT+    I+N++NP W
Sbjct:   343 MPEPEGILRIHVVEAKDLMKKDISVLGKGKSDPYAIINVGAQEFKTQ---IIDNNVNPKW 399

Query:   313 NEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
             +   E  V  E  Q + +++ D +  +  E +G A + +  +
Sbjct:   400 DYWCEATVFIEMGQFVEIQLKDSDDSKKDENLGRASIDIASV 441

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L706	SYT5_ARATH	No assigned EC number	0.7490	0.9417	0.9232	yes	no
A0JJX5	SYT4_ARATH	No assigned EC number	0.7030	0.9526	0.9191	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006418001 SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (583 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	549
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-34
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-27
cd00030	102	cd00030, C2, C2 domain	1e-26
pfam00168	85	pfam00168, C2, C2 domain	2e-25
cd00030	102	cd00030, C2, C2 domain	2e-21
pfam00168	85	pfam00168, C2, C2 domain	5e-21
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-20
smart00239	101	smart00239, C2, Protein kinase C conserved region	8e-20
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	7e-16
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-15
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-15
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	1e-15
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-15
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	4e-15
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	5e-15
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	7e-15
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	7e-15
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	2e-14
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	5e-14
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	2e-13
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	4e-13
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	1e-12
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	1e-12
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-12
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-12
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	3e-12
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	9e-12
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-11
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	3e-11
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	3e-11
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	4e-11
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	4e-11
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	5e-11
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	5e-11
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	5e-11
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	6e-11
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	6e-11
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	1e-10
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	1e-10
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	1e-10
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	2e-10
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-10
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-10
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	3e-10
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	4e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	4e-10
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	4e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	5e-10
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	5e-10
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	8e-10
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	9e-10
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	1e-09
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-09
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-09
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-09
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	3e-09
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	3e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	4e-09
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	4e-09
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	4e-09
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	6e-09
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	7e-09
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	8e-09
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	1e-08
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	1e-08
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	1e-08
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-08
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	2e-08
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-08
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	2e-08
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	3e-08
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-08
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	4e-08
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	4e-08
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	5e-08
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	6e-08
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	7e-08
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	7e-08
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	9e-08
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	1e-07
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	2e-07
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-07
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	2e-07
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	3e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-07
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	4e-07
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	5e-07
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	5e-07
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	6e-07
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	8e-07
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	8e-07
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	9e-07
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	9e-07
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	1e-06
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	1e-06
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	2e-06
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	2e-06
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	2e-06
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	3e-06
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	4e-06
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	4e-06
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	5e-06
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	5e-06
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	7e-06
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	9e-06
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	1e-05
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	1e-05
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	2e-05
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	2e-05
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	2e-05
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	2e-05
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	3e-05
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	3e-05
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	3e-05
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	4e-05
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	7e-05
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	3e-04
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	3e-04
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	3e-04
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	4e-04
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	6e-04
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	6e-04
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	7e-04
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	7e-04
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	0.001
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	0.001
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	0.002
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	0.002
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	0.002
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	0.002
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	0.002
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	0.003
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	0.004

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score =  137 bits (348), Expect = 3e-34
 Identities = 111/476 (23%), Positives = 179/476 (37%), Gaps = 99/476 (20%)

Query: 71  LTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVS 130
           + WLN  L+K WP +  + S+ +   V   L +  P  + +L   +FTLG+  P+  G+ 
Sbjct: 223 VEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIR 282

Query: 131 IIEDGGSGVTMELEMQWDA-------------------NSSIILAIK--TRLGVA-LPVQ 168
                 S     + M  D                    N  I L +K     G   LP+ 
Sbjct: 283 SYPSTESDT---VVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPIL 339

Query: 169 VKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG-----DISTIPGLS 223
           V+++ F G  R+    L+ ++P    VS+ L E  + DF L  +GG     DI  IPGLS
Sbjct: 340 VEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGVDIFAIPGLS 398

Query: 224 DSIEATIHDAIEDSITWPVRKIVPI-LPGDYSELELKPVGTLEVKLVQAKGLTNKDLI-- 280
             I+  I+  +   +  P    + I +    +      +G +EVK+  A+GL   D    
Sbjct: 399 RFIQEIINSTLGPMLLPP--NSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTIN 456

Query: 281 GKSDPYAVL----FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336
           G  DPY  +     V        K++   N LNP+WNE F +I+ +  T  L + +YD  
Sbjct: 457 GTVDPYITVTFSDRVIG------KTRVKKNTLNPVWNETF-YILLNSFTDPLNLSLYDFN 509

Query: 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ--RDTKYRGQVHLELLYCPFGME 394
             +S +++G  Q+ L  L    VK       K+   +  R+TK  G++  +L + P   +
Sbjct: 510 SFKSDKVVGSTQLDLALLHQNPVK-------KNELYEFLRNTKNVGRLTYDLRFFPVIED 562

Query: 395 NVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTV 454
                                                  E   S +  E    G+L VT+
Sbjct: 563 K-------------------------------------KELKGSVEPLEDSNTGILKVTL 585

Query: 455 ILAENLPASDLMGKADPYVVLTMKKSE--TRNKTRVVNDCLNPIWNQTFDFVVEDG 508
              + L             + T  K    T           +P WN  ++ +V D 
Sbjct: 586 REVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTN----HPSWNLQYNVLVTDR 637

Length = 1227

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score =  106 bits (265), Expect = 2e-27
 Identities = 37/101 (36%), Positives = 54/101 (53%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           TL VK++ A+ L  KD  GKSDPY  + +   P++ KK+K + N LNP+WNE FEF V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVW 363
                L + +YD +     + IG   + L +L  G   +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  103 bits (259), Expect = 1e-26
 Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 3/104 (2%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V +++A+ L  KDL GKSDPY  + +    ++  K+K + N LNP+WNE FEF V D 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEFPVLDP 58

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE-PGKVKDVWLKL 366
            +  L V ++D +     + +G  ++ L EL   GK  ++WL L
Sbjct: 59  ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 99.7 bits (249), Expect = 2e-25
 Identities = 33/85 (38%), Positives = 45/85 (52%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V ++ AK L  KDL GKSDPY  + +    + TKK+K + N LNP+WNE F F V   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQ 348
               L + +YD +     + IG   
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 89.0 bits (221), Expect = 2e-21
 Identities = 41/76 (53%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L VTVI A NLPA DL GK+DPYV +++   +   KT+VV + LNP+WN+TF+F V D  
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKF-KTKVVKNTLNPVWNETFEFPVLDPE 59

Query: 510 HDMLIAEVWDHDTFGK 525
            D L  EVWD D F K
Sbjct: 60  SDTLTVEVWDKDRFSK 75

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 86.9 bits (216), Expect = 5e-21
 Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-KTRVVNDCLNPIWNQTFDFVVEDG 508
           L VTVI A+NLP  DL GK+DPYV +++   +    KT+VV + LNP+WN+TF F V   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 509 LHDMLIAEVWDHDTFGK 525
               L  EV+D+D FGK
Sbjct: 61  ELAELRIEVYDYDRFGK 77

Length = 85

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 18/131 (13%)

Query: 262 GTLEVKLVQAKGLTNKDLI------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEH 315
           G L + +++A+ L  KD        GKSDPY ++ V     +T KSK I  +LNP WNE 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKENLNPKWNEV 57

Query: 316 FEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRD 375
           +E +V++   Q L + ++D++  +   L G   + L  +E     D WL L    DV+  
Sbjct: 58  YEAVVDEVPGQELEIELFDEDPDKDDFL-GRLSIDLGSVEKKGFIDEWLPLE---DVK-- 111

Query: 376 TKYRGQVHLEL 386
               G++HL+L
Sbjct: 112 ---SGRLHLKL 119

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 84.1 bits (208), Expect = 8e-20
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-KTRVVNDCLNPIWNQTFDFVVED 507
            L+V +I A NLP  D  GK+DPYV +++        KT+VV + LNP+WN+TF+F V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 508 GLHDMLIAEVWDHDTFGK 525
                L  EV+D D FG+
Sbjct: 61  PELAELEIEVYDKDRFGR 78

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 73.4 bits (181), Expect = 7e-16
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 2/106 (1%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V ++ A+ L + D  GKSDP+   ++    EK  K+KTI   LNP+WNE FE  V   
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTIKKTLNPVWNESFEVPVPSR 58

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369
               L V +YD +     +L+G A + L +LEP +  ++ L L   
Sbjct: 59  VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQ 104

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
           G L+VK+++A GL   D+ GKSDP+ VL +     +T    TI   LNP WN+ F F ++
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQT---HTIYKTLNPEWNKIFTFPIK 57

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
           D     L V +YD++  +  E +G   + L  ++ G+ K  W  L KD  ++   K  G 
Sbjct: 58  D-IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERK--WYAL-KDKKLRTRAK--GS 111

Query: 382 VHLELLY 388
           + LE+  
Sbjct: 112 ILLEMDV 118

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
           G L V +V+AK L  KD    GKSDPYA+L V     +  K++TI N LNP WN   EF 
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEFP 57

Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDLDVQRDT 376
           +     Q L + ++D +     + +G   + L E+         D W+ L K     + +
Sbjct: 58  IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITL-KSTRPGKTS 116

Query: 377 KYRGQVHLEL 386
              G++HL+ 
Sbjct: 117 VVSGEIHLQF 126

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETR-NKTRVVNDCLNPIWNQTFDFVVED 507
           + ++ ++ AENL A    G +DPYV L     + R  KTR + D LNP W++ F+  V  
Sbjct: 2   LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPA 61

Query: 508 GLHDMLIAEVWD------HDTFGKRYL---SRYFQN----RKTWL 539
           G    + A VWD      HD  G+  L    + F +    R+ WL
Sbjct: 62  GEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWL 106

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 7/107 (6%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT-KKSKTINNDLNPIWNEHFEFIVE 321
            L++ L + + L  +D  G SDPY V F      KT  KSKTI  +LNP+W+E F   +E
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPY-VKF--KYGGKTVYKSKTIYKNLNPVWDEKFTLPIE 57

Query: 322 DESTQHLVVRIYD-DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367
           D  TQ L ++++D D G+   + +G A V L  LE  K  +V LKL 
Sbjct: 58  D-VTQPLYIKVFDYDRGLT-DDFMGSAFVDLSTLELNKPTEVKLKLE 102

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 71.7 bits (176), Expect = 4e-15
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 448 GVLSVTVILAENLPASDLM--GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
           GVL V V+ A++L A D    GK+DPY +L++     R KT+ + + LNP WN   +F +
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV--GAQRFKTQTIPNTLNPKWNYWCEFPI 58

Query: 506 EDGLHDMLIAEVWDHDTF-GKRYLSRY 531
               + +L   +WD D F GK YL  +
Sbjct: 59  FSAQNQLLKLILWDKDRFAGKDYLGEF 85

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 71.1 bits (175), Expect = 5e-15
 Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V++++A  +T  DL+   D Y  L++    ++ K++KTI N +NP+WNE FEF ++ +
Sbjct: 2   LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               L + + D++ +    L G     + +L+ G+   V   L
Sbjct: 62  VKNVLELTVMDEDYVMDDHL-GTVLFDVSKLKLGEKVRVTFSL 103

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 71.1 bits (175), Expect = 7e-15
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTF 501
           +    L+V V  A+NL   D  G +DPYV L +    K+ET+ KT+ +   LNP+WN+TF
Sbjct: 10  VKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETF 69

Query: 502 DFVVEDGLHD-MLIAEVWDHDTFGK 525
            F ++    D  L  EVWD D   +
Sbjct: 70  TFDLKPADKDRRLSIEVWDWDRTTR 94

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
           GTLEV L+ AKGL + D +GK DPY ++  R    K+K +K   +  NP WNE F+F VE
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAK--GDGRNPEWNEKFKFTVE 58

Query: 322 D---ESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
                    L++RI D +     + IG A + L
Sbjct: 59  YPGWGGDTKLILRIMDKDNFSDDDFIGEATIHL 91

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
            G+L V V+   NL   D    +DPYVVLT+   +   KTRV+   LNP+WN+     V 
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKV--KTRVIKKNLNPVWNEELTLSVP 57

Query: 507 DGLHDMLIAEVWDHDTFGK 525
           +     L  EV+D DTF K
Sbjct: 58  N-PMAPLKLEVFDKDTFSK 75

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 69.3 bits (170), Expect = 5e-14
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 31/136 (22%)

Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP----------------------- 293
              P+  L+V +++AKGL  KD+ G SDPY +L + P                       
Sbjct: 23  AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLK 82

Query: 294 --LPEK-TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVR 350
             +P K  K ++     LNP+WNE F F VED S   L + I+D +     + +GC  + 
Sbjct: 83  DTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIP 138

Query: 351 LCELEPGKVKDVWLKL 366
           L +L    + D W KL
Sbjct: 139 LKDLPSCGL-DSWFKL 153

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           G L V VI A  L A+D+ GK+DP+ VL +  +  R +T  +   LNP WN+ F F ++D
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNA--RLQTHTIYKTLNPEWNKIFTFPIKD 58

Query: 508 GLHDMLIAEVWDHDTFGKR 526
            +HD+L   V+D D   K 
Sbjct: 59  -IHDVLEVTVYDEDKDKKP 76

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 11/77 (14%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMK-----KSETRNKTRVVNDCLNPIWNQTFDFV 504
           L+V VI AENLP++D  GK+DP+V   +      K++T  KT      LNP+WN++F+  
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKT------LNPVWNESFEVP 54

Query: 505 VEDGLHDMLIAEVWDHD 521
           V   +  +L  EV+D D
Sbjct: 55  VPSRVRAVLKVEVYDWD 71

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED 507
           +L+V V+ A N+   DL+   D YV L +   S+ + +T+ + + +NP+WN+TF+F ++ 
Sbjct: 1   LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

Query: 508 GLHDMLIAEVWDHDTFG 524
            + ++L   V D D   
Sbjct: 61  QVKNVLELTVMDEDYVM 77

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 13/129 (10%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIV 320
           GTL V +++A+ L NK  + K DPY VL +      TKK+KT      +P W+E   F +
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEI 57

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCE-LEPGKVKDVWLKLVKDLDVQRDTKYR 379
            ++    L V ++DD+  +  +LIG  +V L   L+ G+  D W       ++    +Y 
Sbjct: 58  TEDKKPILKVAVFDDDK-RKPDLIGDTEVDLSPALKEGEFDD-W------YELTLKGRYA 109

Query: 380 GQVHLELLY 388
           G+V+LEL +
Sbjct: 110 GEVYLELTF 118

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
             L V +++A+ L   D  G SDPY  + +    +K KK KT      LNP++NE F F 
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGC 346
           V  E  +   LV+ + D + +  +E+IG 
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIGQ 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 10/132 (7%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKS-DPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
           +G L V +  A+GL   D+IG + DPY    +     +  ++K   +  NP+WNE    +
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSIS-NRRELARTKVKKDTSNPVWNETKYIL 59

Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKY 378
           V    T+ L + +YD    +  +LIG A+  L  L +  + +++        ++ R+ K 
Sbjct: 60  VNSL-TEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENL------TKNLLRNGKP 112

Query: 379 RGQVHLELLYCP 390
            G+++ +L + P
Sbjct: 113 VGELNYDLRFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
             L V ++QA  L   D+ G SDPY  +++  LP+K KK  +K     LNP++NE F F 
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFTFK 73

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           V   +   + LV  +YD +     +LIG  +V L  ++ G V + W  L  
Sbjct: 74  VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 61.8 bits (151), Expect = 9e-12
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 13/93 (13%)

Query: 452 VTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHD 511
           V V+ A NL   D  GK+DPY+ + + K +  ++   + + LNP++ + F+       + 
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNS 63

Query: 512 MLIAEVWDHDTFGK-------------RYLSRY 531
           +L   V D+D  G              R+ S++
Sbjct: 64  ILKISVMDYDLLGSDDLIGETVIDLEDRFFSKH 96

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT      LNP +NE F F 
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
           V  E  Q  HL+V + D + I  ++ IG
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 442 REVIIRGVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWN 498
           R    R  L VTV    NLP  D     DPYV   +L  K   TR KT V  D LNP+++
Sbjct: 10  RYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFD 69

Query: 499 QTFDFVVE 506
           +TF+F V 
Sbjct: 70  ETFEFPVS 77

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 23/130 (17%)

Query: 269 VQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-----IVEDE 323
           V  K L    L GK D  A +  R      KK++ + N+LNP+WNE FE+        DE
Sbjct: 3   VSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDE 57

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR---G 380
           S   L + + D E +  + LIG A V L +L    + +V   L+       D+  R    
Sbjct: 58  S---LEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLL-------DSNGRPTGA 107

Query: 381 QVHLELLYCP 390
            + LE+ Y P
Sbjct: 108 TISLEVSYQP 117

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 27/100 (27%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVL---------TMKKSETRNK-------------- 485
           VL VTVI A+ L A D+ G +DPY +L           +KS+ R                
Sbjct: 29  VLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAK 88

Query: 486 ----TRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD 521
               T V    LNP+WN+TF F VED  +D L  ++WDHD
Sbjct: 89  SIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD 128

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
           + LV+ K L   D  G SDPY V F   L  +  KSK  +  LNP W E F+  + D+ +
Sbjct: 4   IVLVEGKNLPPMDDNGLSDPY-VKF--RLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60

Query: 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           Q L + ++D +  +  E IG  ++ L  L   +   + L+L
Sbjct: 61  QILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTF-- 501
            G L V V  A+NLPA    G +D +V   +L  K  +++ KT VV   +NP+WN TF  
Sbjct: 26  TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVY 85

Query: 502 -DFVVEDGLHDMLIAE--VWDHDTFG 524
                ED L    + E  VWDHD   
Sbjct: 86  DGVSPED-LSQACL-ELTVWDHDKLS 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 503
             ++V +I A NL A D+ G +DPYV + +    K+ E + KT +    LNP++N++F F
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKK-KTVIKKRTLNPVFNESFIF 73

Query: 504 VVE-DGLHDM-LIAEVWDHDTFGK 525
            +  + L +  LI  V D D   +
Sbjct: 74  NIPLERLRETTLIITVMDKDRLSR 97

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 434 EKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCL 493
           EK    + +     G L V ++   +L   +  GK+DPY  ++M      +KT+VV+D L
Sbjct: 1   EKAYLARSQRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM--GSQEHKTKVVSDTL 58

Query: 494 NPIWNQTFDFVVEDGLHDMLIAEVWDHDTF 523
           NP WN +  F V+D   D+L   V+D D F
Sbjct: 59  NPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 19/126 (15%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
           +++V+A+ L      G SDPY  L       +  K++TI + LNP W+E FE  V     
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD------VWLKLVKDLDVQRDTKYR 379
             +   ++D   +   +L G A ++   L+P +  D      +WL    DLD Q      
Sbjct: 65  LWISATVWDRSFVGKHDLCGRASLK---LDPKRFGDDGLPREIWL----DLDTQ------ 111

Query: 380 GQVHLE 385
           G++ L 
Sbjct: 112 GRLLLR 117

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 59.9 bits (146), Expect = 6e-11
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 7/82 (8%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF-V 504
           L+V V+ A NLP SD  G +DPYV +++    KK + + KT V    LNP++N+ F F V
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKK-KTSVKKGTLNPVFNEAFSFDV 74

Query: 505 VEDGLHDM-LIAEVWDHDTFGK 525
             + L ++ L+  V D D+ G+
Sbjct: 75  PAEQLEEVSLVITVVDKDSVGR 96

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 8/90 (8%)

Query: 448 GVLSVTVILAENLPASDLM------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTF 501
           GVL + VI A++L A D        GK+DPYV++  +      K++V+ + LNP WN+ +
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIV--RVGAQTFKSKVIKENLNPKWNEVY 58

Query: 502 DFVVEDGLHDMLIAEVWDHDTFGKRYLSRY 531
           + VV++     L  E++D D     +L R 
Sbjct: 59  EAVVDEVPGQELEIELFDEDPDKDDFLGRL 88

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLNPIWNEH 315
           L   G L + +++A+ L   D+ G SDPY    L       K KK+    N LNP +NE 
Sbjct: 10  LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEA 69

Query: 316 FEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367
             F V  E+  +  L++ + D + +  +ELIG  +V       G+ ++ W +++
Sbjct: 70  LVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVG--PNADGQGREHWNEML 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
           K +G L VKL+QA+ L  +D  G +DPY  + + P    TK+SK     LNP ++E F F
Sbjct: 13  KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72

Query: 319 IV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            V  ++   + L V +YD +     E IG  ++ L E++  +  D+W K+
Sbjct: 73  EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           G L V +I A+ L  +D +GK DPYV++   +++ R       D  NP WN+ F F VE 
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQC-RTQERKSKVAKGDGRNPEWNEKFKFTVEY 59

Query: 508 -GLHDM--LIAEVWDHDTF 523
            G      LI  + D D F
Sbjct: 60  PGWGGDTKLILRIMDKDNF 78

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 448 GVLSVTVILAENLPASDLMGKA-DPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           GVL+VT+  A  L  SD++G   DPYV  ++       +T+V  D  NP+WN+T  +++ 
Sbjct: 2   GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETK-YILV 60

Query: 507 DGLHDMLIAEVWDH 520
           + L + L   V+D 
Sbjct: 61  NSLTEPLNLTVYDF 74

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 62.9 bits (153), Expect = 3e-10
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query: 258  LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFE 317
            ++  G L + L   + L + D  G SDP+  LF+    +   K+K +   LNP+WNE F 
Sbjct: 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE--KSVYKTKVVKKTLNPVWNEEFT 1093

Query: 318  FIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTK 377
              V +     L + + D +  + ++L+G A++ L +LEPG   +  +     LD +    
Sbjct: 1094 IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIP----LDGKTFIV 1149

Query: 378  YRGQVHLELLYCPFGMENV 396
              G +H    +      NV
Sbjct: 1150 LDGTLHPGFNFRSKYALNV 1168

Length = 1227

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINND--LNPIWNEHFEFIV 320
           TLE+ ++ A+ L N +L GK   YAV+++ P     K+S  ++ D   NP WNE   F +
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---SHKQSTPVDRDGGTNPTWNETLRFPL 57

Query: 321 EDESTQH----LVVRIYDDEGIQSSELIGCAQVRLCEL 354
           ++   Q     L + +Y +      +LIG  +V L +L
Sbjct: 58  DERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDL 95

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
           G L + + +A  L N + +GK DPY  + V       K ++ TI+N LNP+W+E     V
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN---GIVKGRTVTISNTLNPVWDEVLYVPV 57

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
                Q + + + D E +     +G  ++ + +L
Sbjct: 58  TSP-NQKITLEVMDYEKVGKDRSLGSVEINVSDL 90

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 7/79 (8%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK-SKTINNDLNPIWNEHFEFIVED 322
           + + +V A+GL  KD  G SDPY  + V     KTKK +KTI  +LNP+WNE F F   +
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQV----GKTKKRTKTIPQNLNPVWNEKFHFECHN 58

Query: 323 ESTQHLVVRIYD-DEGIQS 340
            S+  + VR++D D+ I+S
Sbjct: 59  -SSDRIKVRVWDEDDDIKS 76

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 6/81 (7%)

Query: 450 LSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF--V 504
           L VTV+ A +LP  D     +PYV   +L  +  +++ +T+ V   LNP WNQTF++  V
Sbjct: 18  LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77

Query: 505 VEDGLHDMLI-AEVWDHDTFG 524
             + L +  +   VWD+D  G
Sbjct: 78  RRETLKERTLEVTVWDYDRDG 98

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           +S+TV+ A+ L A D  G +DPYV  T++  +T+ +T+ +   LNP+WN+ F F   +  
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYV--TVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS- 59

Query: 510 HDMLIAEVWDHD 521
            D +   VWD D
Sbjct: 60  SDRIKVRVWDED 71

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDF 503
           R  L V +I   NL A D  G +DP+V L +K     ++++KT+V    LNP +N+ F +
Sbjct: 12  RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFY 71

Query: 504 VVEDGLHD----MLIAEVWDHDTFGK 525
            ++    D     L   VWD D  GK
Sbjct: 72  DIK--HSDLAKKTLEITVWDKD-IGK 94

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 15/85 (17%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM-----KKSETR--NKTRVVNDCLNPIWNQTFD 502
           L+V +I A +LPA D+ G +DPYV + +     KK ET+   KT      LNP++N+TF 
Sbjct: 18  LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKT------LNPVFNETFT 71

Query: 503 F-VVEDGLHD-MLIAEVWDHDTFGK 525
           F V    L +  L+  V+D D F K
Sbjct: 72  FKVPYSELGNKTLVFSVYDFDRFSK 96

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 56.6 bits (137), Expect = 9e-10
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 442 REVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWN 498
           R V   G L+V ++ A+NL   D+ G +DPYV + +    K   + KT +    LNP +N
Sbjct: 9   RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYN 68

Query: 499 QTFDFVVEDGLHDM----LIAEVWDHDTFGK 525
           ++F F V      +    LI  V D+D  GK
Sbjct: 69  ESFSFEVP--FEQIQKVHLIVTVLDYDRIGK 97

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 448 GVLSVTVILAENLPASDL-MGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQT-FDFV 504
           GVL VT+  A +LP +D   G +DPYV  +  K  +    TR++   LNP+W +T F  V
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 505 VEDGL--HDMLIAEVWDHDTF 523
             D +   + L   +WD D F
Sbjct: 61  TPDEVKAGERLSCRLWDSDRF 81

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEF-- 318
            L   +++AKGL   D  G SDPY  L + P   K  K  +KT++   NP +NE   +  
Sbjct: 16  ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75

Query: 319 IVEDE-STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361
           I E++   + L + + D++    ++ +G  ++ L +L+P + K 
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQ 118

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 450 LSVTVILAENLP--ASDLMGKADPYVVLTM----KKSETRNKTRVVNDC-LNPIWNQTFD 502
           L++ +I  + LP    D     DPYV + +         + KT+VV +   NP+WN+TF+
Sbjct: 4   LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 503 FVVEDGLHDMLIAEVWDHDTFG 524
           F V       L   V+D D+  
Sbjct: 64  FDVTVPELAFLRFVVYDEDSGD 85

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V++V A+ L  KD  G S  Y  L       + K+++T   DLNP+WNE   F V D 
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVEL---DFDGQKKRTRTKPKDLNPVWNEKLVFNVSDP 58

Query: 324 S---TQHLVVRIYDDE 336
           S      L V +Y+D 
Sbjct: 59  SRLSNLVLEVYVYNDR 74

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
           +G L+V++V+   L  +D    SDPY VL    L  +  K++ I  +LNP+WNE     V
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTS-SDPYVVL---TLGNQKVKTRVIKKNLNPVWNEELTLSV 56

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP 356
            +     L + ++D +     + +G A++   +LEP
Sbjct: 57  PNPMAP-LKLEVFDKDTFSKDDSMGEAEI---DLEP 88

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 502
           G L++T+I A NL A D+ G +DPYV   ++   +   + KT V  + LNP +N+   FD
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 503 FVVEDGLHDMLIAEVWDHDTFG 524
              E+  +  LI  V D+D  G
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVG 95

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE------KTKKSKTINNDLNPIWNEHFE 317
           L V+++ A+ L   D  G SDP+    V  LP        T K++     L P+++E FE
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVK--VELLPRHLFPDVPTPKTQVKKKTLFPLFDESFE 75

Query: 318 FIVEDESTQH----LVVRIYDDEGIQSSELIGCAQVRL 351
           F V  E        L+  + D + + S++  G A + L
Sbjct: 76  FNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 269 VQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKT--INNDLNPIWNEHFEFIVEDES 324
           +  + L +KD++ KSDP+ V++V+        +  +T  I N+LNP +   F      E 
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 325 TQHLVVRIYDDEG----IQSSELIGCAQVRLCEL 354
            Q L   +YD +     +   + +G A+  L E+
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V L  AK L       +  PY  L V    + T+KSK      NP+W E F F+V + 
Sbjct: 2   LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNP 58

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKL 366
             Q L + + DD+  +S   +G   + L EL  EP    D    L
Sbjct: 59  ENQELEIEVKDDKTGKS---LGSLTLPLSELLKEPDLTLDQPFPL 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVL----TMKKSETRNKTRVVNDCLNPIWNQTFDFV- 504
           L  T+I A+ L A D  G +DPYV L       K+ T+ +T+ V+   NP +N+T  +  
Sbjct: 17  LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKA-TKLRTKTVHKTRNPEFNETLTYYG 75

Query: 505 --VEDGLHDMLIAEVWDHDTFGKRYL 528
              ED     L   V D D FG  +L
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRFGNDFL 101

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 53.7 bits (130), Expect = 7e-09
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK---KSKTINNDLNPIWNEHFEFIVED 322
           V +V+A+ L  KD  GKSDPY  + +     K K   +   I N LNP++ + FE     
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLG----KKKINDRDNYIPNTLNPVFGKMFELEATL 59

Query: 323 ESTQHLVVRIYDDEGIQSSELIG 345
                L + + D + + S +LIG
Sbjct: 60  PGNSILKISVMDYDLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           + +TV+ A+ L   DL    DP+ V+T+   +T   T V    L+P WN+ FD  V  G 
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTH-STDVAKKTLDPKWNEHFDLTV--GP 58

Query: 510 HDMLIAEVWDHDTFGKR 526
             ++  +V+D   F K+
Sbjct: 59  SSIITIQVFDQKKFKKK 75

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V++ +AK L   D  G SDPY  L + P P+    +K+KTI   LNP+WNE F F 
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           +   D+  + L + ++D +    ++ +G     + EL      D W KL
Sbjct: 73  LKPADKDRR-LSIEVWDWDRTTRNDFMGSLSFGVSELIK-MPVDGWYKL 119

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 14/85 (16%)

Query: 453 TVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLH-- 510
            V+  +NLP   L GK D    +T +    + KTRV+ + LNP+WN+TF++ +       
Sbjct: 1   LVVSLKNLPG--LKGKGDRIAKVTFR--GVKKKTRVLENELNPVWNETFEWPLAGSPDPD 56

Query: 511 DMLIAEVWDHDTFGKRYLSRYFQNR 535
           + L   V D+         +  +NR
Sbjct: 57  ESLEIVVKDY--------EKVGRNR 73

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           TL +K+++A  L  KD  G SDP+  +++ P  +   ++K    +LNP WNE F F  E 
Sbjct: 17  TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF--EG 74

Query: 323 ESTQHLVVRI-----YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
              + L  R+      D +    ++ IG   + L +++  + +  W  L
Sbjct: 75  FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 10/81 (12%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDFV 504
           V+++ ++  +NLP  D  G +DPYV   +     KS+  +KT      LNP W + FD  
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKT------LNPQWLEQFDLH 54

Query: 505 VEDGLHDMLIAEVWDHDTFGK 525
           + D    +L  EVWD DT  K
Sbjct: 55  LFDDQSQILEIEVWDKDTGKK 75

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 263 TLEVKLVQAKGLTNKDLIGKS--DPYAVLFVRPLP---EKTKKSKTI-NNDLNPIWNEHF 316
           TL +K++  + L        S  DPY  + +  LP       K+K + NN  NP+WNE F
Sbjct: 3   TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           EF V       L   +YD++     + +G A + L  L  G
Sbjct: 63  EFDVTVPELAFLRFVVYDEDSG-DDDFLGQACLPLDSLRQG 102

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 449 VLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF-- 503
            L++ ++ A  LPA D  G +DP+V   +L  KK +   K +  N  LNP WN+TF F  
Sbjct: 17  TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN--LNPHWNETFLFEG 74

Query: 504 VVEDGLHDM-LIAEVWDHDTF 523
              + L    L  +V D+D F
Sbjct: 75  FPYEKLQQRVLYLQVLDYDRF 95

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVL---------FVRPLPEKTKKSKTINNDLNPIWNE 314
           L VK++    L  KD+ G SDPY  +          +  +  KT K KT    LNP WNE
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KT----LNPKWNE 56

Query: 315 HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
            F F V +     L+  ++D+  +   + +G  +V L  L   
Sbjct: 57  EFFFRV-NPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTE 98

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           + + ++ A GL  +DL    DP+AV+ V     +T  +      L+P WNEHF+  V   
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKKTLDPKWNEHFDLTVGPS 59

Query: 324 STQHLVVRIYDDEGIQ--SSELIGCAQVR 350
           S   + ++++D +  +      +GC ++R
Sbjct: 60  SI--ITIQVFDQKKFKKKDQGFLGCVRIR 86

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 56.3 bits (136), Expect = 4e-08
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 448  GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
            G L++ +   ENLP+SD  G +DP+V L + +     KT+VV   LNP+WN+ F   V +
Sbjct: 1040 GYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVY-KTKVVKKTLNPVWNEEFTIEVLN 1098

Query: 508  GLHDMLIAEVWDHDTFGKR 526
             + D+L   V D D+  K 
Sbjct: 1099 RVKDVLTINVNDWDSGEKN 1117

Length = 1227

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG- 508
           L V V+ A++L   D  G +  YV L       + +TR     LNP+WN+   F V D  
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVEL--DFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPS 59

Query: 509 --LHDMLIAEVWDHDTFGKR 526
              + +L   V++    G+R
Sbjct: 60  RLSNLVLEVYVYNDRRSGRR 79

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 30/76 (39%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-VV 505
              L+VTV+ A  L   D     D YV +     E R  T V+ +  NP WN TFDF  V
Sbjct: 27  LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKR--TEVIWNNNNPRWNATFDFGSV 83

Query: 506 EDGLHDMLIAEVWDHD 521
           E      L  EVWD D
Sbjct: 84  ELSPGGKLRFEVWDRD 99

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           +L +++V+ K L  KD+ G SDPY +  V+   E   ++ T+   LNP W E  E+ V  
Sbjct: 1   SLYIRIVEGKNLPAKDITGSSDPYCI--VKVDNEVIIRTATVWKTLNPFWGE--EYTVHL 56

Query: 323 ESTQH-LVVRIYDDEGIQSSELIG--CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 379
               H +   + D++ +   ++IG       +    P  + D W+ L +   V  D + +
Sbjct: 57  PPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGI-DGWMNLTE---VDPDEEVQ 112

Query: 380 GQVHLEL 386
           G++HLEL
Sbjct: 113 GEIHLEL 119

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 50.6 bits (122), Expect = 6e-08
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 11/81 (13%)

Query: 457 AENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDFVVED---G 508
            + L   D  GK+DP++ +  ++SE        +T V+ + LNP+W   F   ++    G
Sbjct: 9   GKKLDKKDFFGKSDPFLEI-SRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNG 66

Query: 509 LHDM-LIAEVWDHDTFGKRYL 528
            +D  +  EV+D+D+ GK  L
Sbjct: 67  DYDRPIKIEVYDYDSSGKHDL 87

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 51.3 bits (123), Expect = 7e-08
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
             + V +++A+ L   D+ G SDPY  +++    ++ +K KT+     LNP++NE F F 
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIG 345
           +  E  +   L++ + D + +  ++LIG
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 263 TLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-IV 320
            L V L++A+ L  +       DP+  + + P   ++ +SK      NP ++E F F + 
Sbjct: 15  QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVS 74

Query: 321 EDESTQH-LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
             E  +  L + +YD +      +IG     L +L+  K   VW  L  
Sbjct: 75  FKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 271 AKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFIVED---- 322
            K L  KD  GKSDP+  +  R   + T     +++ I N LNP+W   F   ++     
Sbjct: 9   GKKLDKKDFFGKSDPFLEIS-RQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCNG 66

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361
           +  + + + +YD +     +LIG  +  L EL      +
Sbjct: 67  DYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLE 105

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLP-EKTKKSKTINNDLNPIWNEH 315
           L   G L V +++AK L   D+   SDP+  +  V  L   KTKK+  +   ++P +NE 
Sbjct: 10  LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNES 69

Query: 316 FEFIVEDESTQH--LVVRIYDDEGIQSSELIG 345
           F F V  E  ++  LV  +Y      S++ IG
Sbjct: 70  FSFKVPQEELENVSLVFTVYGHNVKSSNDFIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 253 YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT----KKSKTINNDL 308
           YS    K    L V + + + L   D     DPY  L++  LP+K+    +K+    ++L
Sbjct: 11  YSSQRQK----LIVTVHKCRNLPPCDSSDIPDPYVRLYL--LPDKSKSTRRKTSVKKDNL 64

Query: 309 NPIWNEHFEFIV--EDESTQHLVVRIYDDEGIQSSE--LIGCAQVRLCELEPGK 358
           NP+++E FEF V  E+   + L V + + +   S E  L+G   + L +L+  K
Sbjct: 65  NPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK 118

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDF 503
            L V ++ A NL   D  G +DP+V + +            KT+V    L P+++++F+F
Sbjct: 17  SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEF 76

Query: 504 VV--EDGLHD--MLIAEVWDHDTFGK 525
            V  E    +  +L+  V D+D  G 
Sbjct: 77  NVPPEQCSVEGALLLFTVKDYDLLGS 102

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKS-DPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHF-- 316
           GTL V ++ AK L   D  G   DPY   ++ P P+KT K KT  +    NP +NE    
Sbjct: 13  GTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVY 70

Query: 317 -EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               VED   + L V ++  + +  +E +G   + L +L+  +  + W  L
Sbjct: 71  DGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG 508
           V  V V  AE L   D  G ADPYV+  +K      ++ V  D L+P ++    F  +  
Sbjct: 4   VTQVHVHSAEGLSKQDSGGGADPYVI--IKCEGESVRSPVQKDTLSPEFDTQAIFYRKK- 60

Query: 509 LHDMLIAEVWDHDTFGKRYL 528
               +  +VW+ +     +L
Sbjct: 61  PRSPIKIQVWNSNLLCDEFL 80

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 448 GVLSVTVILAENLPASDLM--GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
           GV+ V +  AE L  SD    G  DPY+ +T        KTRV  + LNP+WN+TF +++
Sbjct: 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRV-IGKTRVKKNTLNPVWNETF-YIL 493

Query: 506 EDGLHDMLIAEVWDHDTFGKR 526
            +   D L   ++D ++F   
Sbjct: 494 LNSFTDPLNLSLYDFNSFKSD 514

Length = 1227

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-VVE 506
           GVL + +  A +L   + +GK DPYV + +     + +T  +++ LNP+W++     V  
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRV-LVNGIVKGRTVTISNTLNPVWDEVLYVPVTS 59

Query: 507 DGLHDMLIAEVWDHDTFGK 525
                 L  EV D++  GK
Sbjct: 60  PNQKITL--EVMDYEKVGK 76

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
             L V +++   L   D  G SDP+  L+++P   K  K KT      LNP +NE F + 
Sbjct: 13  RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIG 345
           +   D + + L + ++D +  +S++ IG
Sbjct: 73  IKHSDLAKKTLEITVWDKDIGKSNDYIG 100

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           +L V +  A+NLP +    +  PYV LT+ K ++   K++V     NP+W + F F+V +
Sbjct: 1   LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQ---KSKVKERTNNPVWEEGFTFLVRN 57

Query: 508 GLHDMLIAEVWDHDT 522
             +  L  EV D  T
Sbjct: 58  PENQELEIEVKDDKT 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETR---NKTRVVNDCLNPIWNQTFDFVVE 506
           L+V V+ A +LP  D+ G ADPYV + +   + R    KT V    LNP++N++F F + 
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 507 DGLHDMLIAE--VWDHD 521
               + +  E  V D D
Sbjct: 77  SEELEDISVEFLVLDSD 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 13/79 (16%)

Query: 457 AENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDF---VVEDGLHDM 512
           A +L A+D  G +DP+  V  + +S+    T V+ + L+P W+QT  F    +     ++
Sbjct: 10  ARDLLAADKSGLSDPFARVSFLNQSQE---TEVIKETLSPTWDQTLIFDEVELYGSPEEI 66

Query: 513 L------IAEVWDHDTFGK 525
                  + E++D D+ GK
Sbjct: 67  AQNPPLVVVELFDQDSVGK 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L   V+ A +L   D  G +DP+V +     +T   + V   C  P WN+ F+F + +G 
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFYN-GQTLETSVVKKSCY-PRWNEVFEFELMEGA 59

Query: 510 HDMLIAEVWDHDTFGK 525
              L  EVWD D   K
Sbjct: 60  DSPLSVEVWDWDLVSK 75

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L++ +  AK L +     K DPY  + V   P   KK++      NP WNEHF  +V  +
Sbjct: 4   LQITVESAK-LKSNSKSFKPDPYVEVTVDGQP--PKKTEVSKKTSNPKWNEHFTVLVTPQ 60

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKL 366
           ST     +++    +++  L+G A + L ++     GK+++V L L
Sbjct: 61  STLEF--KVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTL 104

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 47.6 bits (114), Expect = 9e-07
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 448 GVLSVTVILAENLPASD-LMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF 503
           G L V +    NL  +D    +++PYV   +L  K  +++ KT V  +  NP++N+T  +
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73

Query: 504 VVEDGLHDMLIAE-----VWDHDTFGKR 526
            +       L        VW HD FG+ 
Sbjct: 74  HIS---KSQLETRTLQLSVWHHDRFGRN 98

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSK----TINNDLNPIWNEHFE 317
             L V ++QA+ L  +D     +PY  +++  LP++++KSK    T+   LNP WN+ FE
Sbjct: 16  SQLIVTVLQARDLPPRDDGSLRNPYVKVYL--LPDRSEKSKRRTKTVKKTLNPEWNQTFE 73

Query: 318 F 318
           +
Sbjct: 74  Y 74

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 450 LSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWN-QTFDFVVED 507
           L V V+ A +LP  D      D +V +    +    KT VV   LNP+WN + F F V+D
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTT--YKTDVVKKSLNPVWNSEWFRFEVDD 58

Query: 508 GL--HDMLIAEVWDHDTF 523
                + L   V DHDT+
Sbjct: 59  EELQDEPLQIRVMDHDTY 76

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDF 503
           +L V V+   +L   D+ G +DPYV +++   +        +T+ +   LNP WN+ F F
Sbjct: 1   ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 504 VVEDGLHDMLIAEVWD 519
            V    H +L  EV+D
Sbjct: 61  RVNPREHRLLF-EVFD 75

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 22/126 (17%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPEKTKKSKTINNDLNPIWNEH--FEFIV 320
           L   + QA+ L   D  G SDP+A V F+     ++++++ I   L+P W++   F+ + 
Sbjct: 3   LRAYIYQARDLLAADKSGLSDPFARVSFL----NQSQETEVIKETLSPTWDQTLIFDEVE 58

Query: 321 EDESTQHL-------VVRIYDDEGIQSSELIGCAQVR------LCELEPGKVKDVWLKLV 367
              S + +       VV ++D + +   E +G +  +      L E  P K++  W  + 
Sbjct: 59  LYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQ--WFPIY 116

Query: 368 KDLDVQ 373
           K     
Sbjct: 117 KGGQSA 122

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 263 TLEVKLVQAKGL-TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
           +L++K+ +AK L          D Y    V    E+  ++KT+   L P + E F F + 
Sbjct: 1   SLKIKIGEAKNLPPRSGPNKMRDCYCT--VNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP 58

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
             + +HL   IYD + ++   +IG   ++  +L     KD W  L     V  D++ +G+
Sbjct: 59  -RTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQP---VDADSEVQGK 114

Query: 382 VHLEL 386
           VHLEL
Sbjct: 115 VHLEL 119

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L + +    NL A D  G +DPYV       +T  K++ +   LNP+W++ F   +ED +
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKFKYG-GKTVYKSKTIYKNLNPVWDEKFTLPIED-V 59

Query: 510 HDMLIAEVWDHD 521
              L  +V+D+D
Sbjct: 60  TQPLYIKVFDYD 71

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 272 KGL-TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 330
           KGL T++   G   PYA L++    +    ++      NP WN   EF+V D     + V
Sbjct: 1   KGLDTSESKTGLLSPYAELYLNG--KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTV 58

Query: 331 RIYDDEGIQSSELIGCAQVRLCEL 354
            + DD   +   ++G   + L +L
Sbjct: 59  VVKDD-RDRHDPVLGSVSISLNDL 81

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVR-PLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
           L V++++ + L  K   G  DP+A + +       TK++K      NP ++E F F +  
Sbjct: 1   LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
             +        ++E ++ SEL    +V L         D +L  V+
Sbjct: 60  GFSYEKKSFKVEEEDLEKSEL----RVELWHASMV-SGDDFLGEVR 100

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
           +G L V +V+ + L   +  GKSDPY  +    +  +  K+K +++ LNP WN   +F V
Sbjct: 14  IGRLMVVIVEGRDLKPCNSNGKSDPYCEV---SMGSQEHKTKVVSDTLNPKWNSSMQFFV 70

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
           +D     L + ++D +     + +G  ++R+ ++
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADI 104

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V +++A+ L   D     + +    +     +T+ S+T N   NP WNE   F+  + 
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNG--NPSWNEELMFVAAEP 59

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE----PGKVKDVWLKLVKDLDVQRD---T 376
              HL++ + D  G    E +G A + L ++E       V   W  L +           
Sbjct: 60  FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKR 119

Query: 377 KYRGQVHLEL 386
           K+  ++HL L
Sbjct: 120 KFASRIHLRL 129

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L +TV  A  L ++    K DPYV +T+     + KT V     NP WN+ F  +V    
Sbjct: 4   LQITVESA-KLKSNSKSFKPDPYVEVTVDGQPPK-KTEVSKKTSNPKWNEHFTVLVTP-- 59

Query: 510 HDMLIAEVWDHDTFGK 525
              L  +VW H T   
Sbjct: 60  QSTLEFKVWSHHTLKA 75

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 58/296 (19%), Positives = 92/296 (31%), Gaps = 58/296 (19%)

Query: 239 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTN-KDLIGKSDPYAVLFVRPLPEK 297
            +PV +    L G    LE    G L+V L + K L             A L+     ++
Sbjct: 556 FFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNK--SAELYTNA--KE 611

Query: 298 TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
              +  +    +P WN  +  +V D     + V  +D    QS ++I      L +L   
Sbjct: 612 VYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDV---QSGKVIATEGSTLPDL--- 665

Query: 358 KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNG 417
                       +D   DT                   VF                    
Sbjct: 666 ------------IDRTLDTFL-----------------VFPLR----------------N 680

Query: 418 EKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM 477
            K      N  + I     +S K       G + V+V  A +L      GK+DPY    +
Sbjct: 681 PKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYAT-VL 739

Query: 478 KKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQ 533
             +  + +T   +  LNPIWN+   +V     +  L  E  D++  G         
Sbjct: 740 VNNLVKYRTIYGSSTLNPIWNE-ILYVPVTSKNQRLTLECMDYEESGDDRNLGEVN 794

Length = 1227

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
            L   +++A+ L  KD  G SDP+  +F      +T ++  +     P WNE FEF + +
Sbjct: 1   RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELME 57

Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
            +   L V ++D + +  ++ +G     +  L+  K ++ W +L+   D + + +  G
Sbjct: 58  GADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLP--DPRAEEESGG 113

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 13/128 (10%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF--IV 320
           +L +++++AK L +K   G  DPY  + +     +  ++KT+   LNP W E F F    
Sbjct: 1   SLRLRILEAKNLPSK---GTRDPYCTVSLDQ--VEVARTKTVE-KLNPFWGEEFVFDDPP 54

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
            D +   L     D        +IG  +V L +L+ G+ KD W  L     V  D++ +G
Sbjct: 55  PDVTFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPLTP---VDPDSEVQG 109

Query: 381 QVHLELLY 388
            V L   Y
Sbjct: 110 SVRLRARY 117

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 13/113 (11%)

Query: 248 ILPGDYSELELKPV--GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSK--- 302
           + P     L+ K    G L V + +AK L      G SD +   ++  LP+K+KKSK   
Sbjct: 11  VPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYL--LPDKSKKSKQKT 68

Query: 303 -TINNDLNPIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
             +   +NP+WN  F +     ED S   L + ++D + + S++ +G   VRL
Sbjct: 69  PVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGG--VRL 119

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVEDG 508
           L +T+I AE+L   +L GK   Y V+ +     +  T V  D   NP WN+T  F +++ 
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVVWI-DPSHKQSTPVDRDGGTNPTWNETLRFPLDER 60

Query: 509 L 509
           L
Sbjct: 61  L 61

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 7/81 (8%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 503
           G L+V +I A+ L  +D+   +DP+V + +    K  +T+ KT  +   ++P +N++F F
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTK-KTSCMRGTIDPFYNESFSF 72

Query: 504 -VVEDGLHDM-LIAEVWDHDT 522
            V ++ L ++ L+  V+ H+ 
Sbjct: 73  KVPQEELENVSLVFTVYGHNV 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 15/87 (17%)

Query: 447 RGVLSVTVILAENLPASDLMGKA-DPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFD 502
            G L V V+ A+NLP  D  G   DPYV   +    +  T+ KT+VV    NP +N+   
Sbjct: 12  NGTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEM-- 67

Query: 503 FVVEDGLHDMLIAE------VWDHDTF 523
            +V DGL    + +      VW HD+ 
Sbjct: 68  -LVYDGLPVEDLQQRVLQVSVWSHDSL 93

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 457 AENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDFVVEDGLHD 511
             NL   D++ K+DP+VV+ +K   +       +T V+ + LNP +  T  F V+    +
Sbjct: 9   CRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTT--FTVDYYFEE 66

Query: 512 M--LIAEVWDHD 521
           +  L  EV+D D
Sbjct: 67  VQKLRFEVYDVD 78

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L VK ++A GL+     G S+PY VL +   P+K + S   N   NP W+EHF F +   
Sbjct: 1   LLVKNIKANGLSEA--AGSSNPYCVLEMDEPPQKYQSSTQKNTS-NPFWDEHFLFELSPN 57

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
           S + L+  +YD+     S+ +G A V   EL 
Sbjct: 58  SKE-LLFEVYDNGKKSDSKFLGLAIVPFDELR 88

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 447 RGVLSVTVILAENLPASDL-MGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDF 503
           +  L V +I   +LPA D   G +DPYV L  + + E + KTRV+    NP++++TF F
Sbjct: 15  KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTF 73

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
             L V +++A+ L   D+ G +DPY  + +    ++  K KT      LNP++NE F F 
Sbjct: 15  NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74

Query: 320 VEDESTQHLVVRI--YDDEGIQSSELIG 345
           +  E  + + V     D + +  +E+IG
Sbjct: 75  IPSEELEDISVEFLVLDSDRVTKNEVIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 7/65 (10%)

Query: 262 GTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTK--KSKTI--NNDLNPIWNEHF 316
           G+LEV + + + L   D    +S+PY  +++  LP+K+K  K KT    N  NP++NE  
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYL--LPDKSKQSKRKTSVKKNTTNPVFNETL 71

Query: 317 EFIVE 321
           ++ + 
Sbjct: 72  KYHIS 76

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L + ++  +NLPA D+ G +DPY ++ +  +E   +T  V   LNP W + +   +  G 
Sbjct: 2   LYIRIVEGKNLPAKDITGSSDPYCIVKV-DNEVIIRTATVWKTLNPFWGEEYTVHLPPGF 60

Query: 510 HDMLIAEVWDHDTFGK 525
           H +    V D DT  +
Sbjct: 61  HTVSFY-VLDEDTLSR 75

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 450 LSVTVILAENLPASDL-MGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
           L V VI  ++L A+D    ++DPYV   +L  K +  + KT V    LNP++N+T  + V
Sbjct: 17  LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76

Query: 506 E--DGLHDMLIAEVWDHDTFGK 525
           E  +    +L   VW  D+ G+
Sbjct: 77  EREELPTRVLNLSVWHRDSLGR 98

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 38/138 (27%)

Query: 262 GTLEVKLVQAKGLTNKDL------------------------------IGKSDPYAVLFV 291
           GTL+V + +A  L N D+                                 SDPYA + +
Sbjct: 7   GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL 66

Query: 292 RPLPEKTKKSKT--INNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQV 349
                  + ++T  I N  NP+WNE F       ++ H+   + D++ +  ++LIG A +
Sbjct: 67  ----AGARVARTRVIENSENPVWNESFHIYCAHYAS-HVEFTVKDNDVV-GAQLIGRAYI 120

Query: 350 RLCELEPGKVKDVWLKLV 367
            + +L  G+  + WL ++
Sbjct: 121 PVEDLLSGEPVEGWLPIL 138

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVL----FVRPLPEKTKKSKTINNDLNPIWNE-H 315
           G L V + +A  L   D   G SDPY       F +PL      ++ I  DLNP+W E  
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPL----YSTRIIRKDLNPVWEETW 56

Query: 316 FEFIVEDESTQH--LVVRIYD 334
           F  +  DE      L  R++D
Sbjct: 57  FVLVTPDEVKAGERLSCRLWD 77

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
           V +  A+GL+ +D  G +DPY ++       ++ +S    + L+P ++    F  +   +
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKPRS 63

Query: 326 QHLVVRIYDD 335
             + +++++ 
Sbjct: 64  P-IKIQVWNS 72

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 264 LEVKLVQAKGLT---NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
           LEV ++ A+GL     KD  G +D Y V    P   K  +++T+ +  NP WNE + + V
Sbjct: 2   LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP---KWVRTRTVEDSSNPRWNEQYTWPV 58

Query: 321 EDESTQHLVVRIYD------DEGIQSSELIGCAQVRLCELEPGKV 359
            D  T  L V ++D       E +Q   LIG  ++RL  LE  +V
Sbjct: 59  YDPCTV-LTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRV 102

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L VTVI A++L  SD     + +V   +     R +     +  NP WN+   FV  +  
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRN-GNPSWNEELMFVAAEPF 60

Query: 510 HDMLIAEVWDHDTFGK 525
            D LI  V D     K
Sbjct: 61  EDHLILSVEDRVGPNK 76

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-INNDLNPIWNEHFEF--IV 320
           L V +++A+ +  KD  G +  + V  V  LP K +++KT +    NP++NE F F  + 
Sbjct: 18  LTVTVIRAQDIPTKDR-GGASSWQVHLVL-LPSKKQRAKTKVQRGPNPVFNETFTFSRVE 75

Query: 321 EDESTQHLV-VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            +E     +  R+Y  E ++   LIG   V L +L       VWL L
Sbjct: 76  PEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVV-NDCLNPIWNQTFDF-VV 505
           G L V V+ A NLP    + K DPY VL +       KT+       +P W++   F + 
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRI--GGVTKKTKTDFRGGQHPEWDEELRFEIT 58

Query: 506 EDGLHDMLIAEVWDHD 521
           ED    + +  V+D D
Sbjct: 59  EDKKPILKV-AVFDDD 73

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 448 GVLSVTVILAENLPASDLMGKADPY--VVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-V 504
           G+L+V +I A NL   D  G ADPY  V L   +S T+ ++++    LNP ++++F F V
Sbjct: 16  GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTK-QSKIHKKTLNPEFDESFVFEV 74

Query: 505 VEDGLHD-MLIAEVWDHDTFGK 525
               L    L   ++D D F +
Sbjct: 75  PPQELPKRTLEVLLYDFDQFSR 96

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-I 319
           + TL V +++A GL   D    +D Y  +F      + K+++ I N+ NP WN  F+F  
Sbjct: 27  LATLTVTVLRATGL-WGDYFTSTDGYVKVF---FGGQEKRTEVIWNNNNPRWNATFDFGS 82

Query: 320 VEDESTQHLVVRIYDDEGIQSSELIG-CAQVRLCELEPGKVKD 361
           VE      L   ++D +     +L+G C+ V     E G  +D
Sbjct: 83  VELSPGGKLRFEVWDRDNGWDDDLLGTCSVV----PEAGVHED 121

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 445 IIRGVLSVTVILAENLPASDL-MGKADPYVVLTMKKSETRNK-TRVVNDCLNPIWNQTFD 502
           +    L+V++I A NLP     +   DP+V + +   E R+  ++V     NP +++TF 
Sbjct: 11  LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFV 70

Query: 503 FVV--EDGLHDMLIAEVWDHDTFGKRYL 528
           F V  ++     L   V+D D F +  +
Sbjct: 71  FQVSFKELQRRTLRLSVYDVDRFSRHCI 98

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L V  I A  L  +   G ++PY VL M +   + ++    +  NP W++ F F +    
Sbjct: 1   LLVKNIKANGLSEA--AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNS 58

Query: 510 HDMLIAEVWDHD 521
            ++L  EV+D+ 
Sbjct: 59  KELLF-EVYDNG 69

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L V V+ A  LPA       DP V + +     +  T+ +    NP WNQ F F  +   
Sbjct: 2   LYVRVVKARGLPA----NSNDPVVEVKL--GNYKGSTKAIERTSNPEWNQVFAFSKDRLQ 55

Query: 510 HDMLIAEVWDHDTFGKRYLSR 530
              L   VWD D     +L  
Sbjct: 56  GSTLEVSVWDKDKAKDDFLGG 76

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF- 503
             L++ V+ A+ L +++  G  + YV +++   K+   R KT  V D  NP++++TF F 
Sbjct: 12  RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD 70

Query: 504 VVEDGLHDMLIAEVW 518
           V E      L+  VW
Sbjct: 71  VNERDYQKRLLVTVW 85

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 12/87 (13%)

Query: 448 GVLSVTVILAENLPASD-LMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF 503
             L+V V    NL   D    +++PYV   +L  K  +++ KT +  +  NP++N+T  +
Sbjct: 15  QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKY 74

Query: 504 VVEDGLHDMLIAE-----VWDHDTFGK 525
            +    H  L        VW +D FG+
Sbjct: 75  SIS---HSQLETRTLQLSVWHYDRFGR 98

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 263 TLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
            L V +++ + L   D   G SDPY  L +  LPEK  K KT  +    NP+++E F F
Sbjct: 17  ALLVNIIECRDLPAMDEQSGTSDPYVKLQL--LPEKEHKVKTRVLRKTRNPVYDETFTF 73

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	549
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.98
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.89
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.85
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.85
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.84
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.84
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.83
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.83
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.83
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.82
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.82
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.82
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.82
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.81
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.81
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.81
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.81
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.81
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.8
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.8
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.8
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.8
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.8
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.79
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.79
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.79
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.79
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.78
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.78
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.78
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.77
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.77
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.77
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.77
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.76
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.76
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.76
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.76
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.76
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.76
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.75
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.75
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.75
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.75
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.75
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.75
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.75
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.75
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.75
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.75
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.75
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.75
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.74
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.74
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.74
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.73
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.73
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.73
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.72
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.72
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.72
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.72
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.72
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.72
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.72
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.72
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.71
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.71
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.71
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.71
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.7
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.7
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.7
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.7
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.7
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.7
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.7
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.7
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.7
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.69
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.69
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.69
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.69
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.69
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.69
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.69
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.68
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.68
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.68
PLN03008	868	Phospholipase D delta	99.68
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.68
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.68
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.67
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.67
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.67
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.67
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.67
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.67
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.67
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.67
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.66
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.66
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.66
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.65
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.65
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.65
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.65
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.65
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.65
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.64
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.64
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.64
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.64
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.64
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.64
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.64
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.64
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.63
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.63
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.63
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.63
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.63
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.63
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.62
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.62
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.62
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.62
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.62
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.62
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.62
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.62
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.62
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.61
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.61
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.61
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.61
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.61
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.61
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.61
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.61
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.61
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.61
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.61
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.61
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.6
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.6
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.6
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.6
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.6
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.6
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.59
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.59
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.59
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.59
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.59
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.59
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.59
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.59
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.58
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.58
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.56
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.56
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.56
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.56
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.56
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.55
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.54
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.53
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.53
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.53
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.52
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.52
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.52
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.52
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.51
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.51
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.5
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.5
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.5
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.5
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.47
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.46
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.45
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.45
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.45
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.42
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.42
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.41
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.38
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.35
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.33
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.31
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.31
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.3
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.3
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.28
PLN03008	868	Phospholipase D delta	99.27
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.26
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.23
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.23
PLN02270	808	phospholipase D alpha	99.18
PF10296	91	DUF2404: Putative integral membrane protein conser	99.17
PLN02223	537	phosphoinositide phospholipase C	99.17
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.16
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.14
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.09
PLN02952	599	phosphoinositide phospholipase C	99.09
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.08
PLN02223	537	phosphoinositide phospholipase C	99.04
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.02
PLN02230	598	phosphoinositide phospholipase C 4	98.97
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.94
PLN02222	581	phosphoinositide phospholipase C 2	98.93
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.92
PLN02228	567	Phosphoinositide phospholipase C	98.91
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.88
PLN02230	598	phosphoinositide phospholipase C 4	98.85
PLN02952	599	phosphoinositide phospholipase C	98.83
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.83
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.81
PLN02222	581	phosphoinositide phospholipase C 2	98.79
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.75
PLN02228	567	Phosphoinositide phospholipase C	98.69
PLN02270	808	phospholipase D alpha	98.66
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.64
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.63
PLN02352	758	phospholipase D epsilon	98.62
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.61
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.58
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.41
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.39
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.32
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.27
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.17
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.03
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.0
KOG3532	1051	consensus Predicted protein kinase [General functi	97.97
PLN02964	644	phosphatidylserine decarboxylase	97.92
PLN02352	758	phospholipase D epsilon	97.87
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.73
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.53
PLN02964	644	phosphatidylserine decarboxylase	97.38
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.38
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.26
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.05
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	96.99
PF15627	156	CEP76-C2: CEP76 C2 domain	96.63
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.53
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.38
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.91
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.67
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	95.54
KOG3837	523	consensus Uncharacterized conserved protein, conta	95.52
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	95.48
PF15627	156	CEP76-C2: CEP76 C2 domain	95.34
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	95.02
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	94.86
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	94.81
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.42
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	93.71
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	93.37
KOG1452	442	consensus Predicted Rho GTPase-activating protein	92.8
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	92.4
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	92.27
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	92.13
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	92.11
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.05
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	91.79
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	91.77
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	90.99
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	90.58
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	89.79
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	88.53
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	87.87
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	87.63
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	87.05
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	86.66
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	85.48
KOG1452	442	consensus Predicted Rho GTPase-activating protein	84.65
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	83.14

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=2.3e-54  Score=459.72  Aligned_cols=460  Identities=26%  Similarity=0.434  Sum_probs=365.3

Q ss_pred             CCCcchHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCcceEEEEEEecCCCCceeeeEEEEeC-CCCeEEEEEE
Q 008910           66 SHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELE  144 (549)
Q Consensus        66 ~~~E~~~WlN~~l~~~Wp~~~~~~~~~~~~~~~~~l~~~~p~~~~~i~~~~~~lG~~~P~i~~i~~~~~-~~~~~~le~~  144 (549)
                      .|+|++||||.+|+++||.+++.+++.+.+.+|+.|.+..|+||+++.+.+||||++||+|.+||.|+. +.+.+.||++
T Consensus       218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~  297 (1227)
T COG5038         218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD  297 (1227)
T ss_pred             cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence            478999999999999999999999999999999999999999999999999999999999999999987 6799999999


Q ss_pred             EEEec---------------CceEEEEEEe--eec-eeeeEEEEEEEEEEEEEEEeecCCCCCCceeeEEEEecccceee
Q 008910          145 MQWDA---------------NSSIILAIKT--RLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLD  206 (549)
Q Consensus       145 ~~~~~---------------~~~i~l~~~~--~~g-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~f~~~p~l~  206 (549)
                      +.+.-               ++.|.|.++.  .+| .++||.|+++.|.|++|++++ |++.+|++..+.++|++.|.+|
T Consensus       298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~d  376 (1227)
T COG5038         298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFD  376 (1227)
T ss_pred             eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCccee
Confidence            99962               3456777753  355 789999999999999999999 9999999999999999999999


Q ss_pred             EEEEEcc-----cCcccCcchHHHHHHHHHHHhhccccccceeeccCC---CCCCcccccCceeEEEEEEEEcccccccC
Q 008910          207 FKLKVVG-----GDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPIL---PGDYSELELKPVGTLEVKLVQAKGLTNKD  278 (549)
Q Consensus       207 f~~~~~g-----~~~~~iP~l~~~~~~~i~~~i~~~~~~P~~~~ip~~---~~~~~~~~~~~~g~L~V~v~~a~~L~~~d  278 (549)
                      |.+.++|     .||+.||||+.|++++|...++.++++|+.+++++.   .++    ...+.|+|.|+|.+|++|...+
T Consensus       377 f~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~----s~~aIGVv~vkI~sa~~lk~~d  452 (1227)
T COG5038         377 FILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGD----SGTAIGVVEVKIKSAEGLKKSD  452 (1227)
T ss_pred             EEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccc----cCCeeEEEEEEEeeccCccccc
Confidence            9999987     378999999999999999999999999999998763   232    3368899999999999999988


Q ss_pred             --CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCC
Q 008910          279 --LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP  356 (549)
Q Consensus       279 --~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~  356 (549)
                        ..+..|||+.+...  +....||++.+++.||+|||+|...+... ++.|.++|||.+....|+.+|++.++|..|..
T Consensus       453 ~~i~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~  529 (1227)
T COG5038         453 STINGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQ  529 (1227)
T ss_pred             ccccCCCCceEEEEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhh
Confidence              66899999999965  23456999999999999999998888654 67999999998888999999999999999876


Q ss_pred             CceeEE-EEEccccccccCCCceeeEEEEEEEEeecccCCcccCCCC---CCCC-------cchHHHH------------
Q 008910          357 GKVKDV-WLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFA---PNFS-------MTSLEKV------------  413 (549)
Q Consensus       357 ~~~~~~-w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~---~~~~-------~~~~~~~------------  413 (549)
                      ...... -+.+      ..+.+..|+|+..+.|+|.........+..   ++..       +...+..            
T Consensus       530 ~~~~~ne~~e~------~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a  603 (1227)
T COG5038         530 NPVKKNELYEF------LRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSA  603 (1227)
T ss_pred             ccccccceeee------eccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeE
Confidence            554432 3333      346688899999999999866543222111   0000       0000000            


Q ss_pred             ---------hh-----ccccc--------------------ccCCC-CCc-------hhhhhhh----------hh----
Q 008910          414 ---------LT-----NGEKA--------------------LKSGA-NGT-------EAIELEK----------DA----  437 (549)
Q Consensus       414 ---------~~-----~~~~~--------------------~~~~~-~~~-------~~~~~~~----------~~----  437 (549)
                               ..     ...+.                    ...+. .+.       ..++.-.          ..    
T Consensus       604 ~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~~t~dt~~~f~~~~~kg  683 (1227)
T COG5038         604 ELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLIDRTLDTFLVFPLRNPKG  683 (1227)
T ss_pred             EEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhhhccccceEEEEcCCCcc
Confidence                     00     00000                    00000 000       0000000          00    


Q ss_pred             ----hhhcccc-------------ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccE
Q 008910          438 ----SQKRREV-------------IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQT  500 (549)
Q Consensus       438 ----~~~~~~~-------------~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~  500 (549)
                          +..|++.             ...|.++|.|..|.++......+.+|||+++.+++ ..++||-....+.||.||+.
T Consensus       684 ~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~-~~k~rti~~~~~~npiw~~i  762 (1227)
T COG5038         684 RIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNN-LVKYRTIYGSSTLNPIWNEI  762 (1227)
T ss_pred             eEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEecc-eeEEEEecccCccccceeee
Confidence                0001111             34689999999999999877888999999999886 57888888889999999998


Q ss_pred             EEEEEecCCCCeEEEEEEECCCCCCc-eeEEEEEeccccccc
Q 008910          501 FDFVVEDGLHDMLIAEVWDHDTFGKR-YLSRYFQNRKTWLHD  541 (549)
Q Consensus       501 f~f~v~~~~~~~l~i~V~d~~~~~~d-~lG~~~i~l~~l~~~  541 (549)
                      ..-++..+ .+.+.++++|....++| .+|++.+++++++.+
T Consensus       763 ~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k  803 (1227)
T COG5038         763 LYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKK  803 (1227)
T ss_pred             EEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeec
Confidence            88787754 45699999999999886 999999999999873

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.6e-31  Score=271.14  Aligned_cols=224  Identities=32%  Similarity=0.480  Sum_probs=193.5

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD  334 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~d  334 (549)
                      |......|.|+|++|++|+.+|..|.+||||++++.|+...+.+|++.++++||+|||+|.|.+..  .....|.+.|||
T Consensus       162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~  241 (421)
T KOG1028|consen  162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD  241 (421)
T ss_pred             ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence            334668899999999999999977889999999999888889999999999999999999999653  356799999999


Q ss_pred             CCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeecccCCcccCCCCCCCCcchHHHHh
Q 008910          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVL  414 (549)
Q Consensus       335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  414 (549)
                      +|+++++++||++.++|..+........|.++......  .....|+|.++++|.|                        
T Consensus       242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~--~~~~~gel~~sL~Y~p------------------------  295 (421)
T KOG1028|consen  242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD--SEELAGELLLSLCYLP------------------------  295 (421)
T ss_pred             cCCcccccEEEEEEecCccccccccceeeeccccccCC--cccccceEEEEEEeec------------------------
Confidence            99999999999999999998877778899999865432  1222389999999985                        


Q ss_pred             hcccccccCCCCCchhhhhhhhhhhhccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccC
Q 008910          415 TNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVND  491 (549)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~  491 (549)
                                                     ..|.|+|.|++|+||...+..+.+||||++++-.   ...++||.++++
T Consensus       296 -------------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~  344 (421)
T KOG1028|consen  296 -------------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK  344 (421)
T ss_pred             -------------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC
Confidence                                           2389999999999999999999999999999842   245789999999


Q ss_pred             CCCCccccEEEEEEec--CCCCeEEEEEEECCCCCC-ceeEEEEEeccc
Q 008910          492 CLNPIWNQTFDFVVED--GLHDMLIAEVWDHDTFGK-RYLSRYFQNRKT  537 (549)
Q Consensus       492 t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~  537 (549)
                      +.||+|||+|.|.+..  ..+..|.|+|||++.++. ++||++.++...
T Consensus       345 ~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  345 TLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             CCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence            9999999999998863  244579999999999987 699999998775

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.89  E-value=3.4e-22  Score=169.34  Aligned_cols=119  Identities=24%  Similarity=0.446  Sum_probs=103.7

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCC-CCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  339 (549)
                      .|.|.|+|++|++++..+ .|++||||++.++   +++++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~   75 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT   75 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence            489999999999988777 7999999999997   67889999865 89999999999999764 458999999999999


Q ss_pred             CCceeEEEEEECc-ccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          340 SSELIGCAQVRLC-ELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       340 ~d~~lG~~~v~l~-~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      +|++||++.+++. .+..+...+.|++|.+..    .....|+|+++++|
T Consensus        76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~----~~~~~g~i~l~l~y  121 (121)
T cd04016          76 MDERIAWTHITIPESVFNGETLDDWYSLSGKQ----GEDKEGMINLVFSY  121 (121)
T ss_pred             CCceEEEEEEECchhccCCCCccccEeCcCcc----CCCCceEEEEEEeC
Confidence            9999999999996 577888889999997532    34567999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.85  E-value=3.4e-21  Score=196.66  Aligned_cols=218  Identities=22%  Similarity=0.331  Sum_probs=174.6

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  340 (549)
                      ...|.|+|.+|+||+..+..|.+||||.+.+.  .....||.++.+++.|.|.|+|.|.+... -..|.|.|||.| +++
T Consensus         4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~   79 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKR   79 (800)
T ss_pred             ccceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-ccc
Confidence            35689999999999999999999999999997  35689999999999999999999999754 458999999999 899


Q ss_pred             CceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeecccCCcccCCCCCCCCcchHHHHhhccccc
Q 008910          341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA  420 (549)
Q Consensus       341 d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (549)
                      |+.||.+.+.=++|......+.|+.|++-   +.+....|++++++.+.+....                          
T Consensus        80 D~~IGKvai~re~l~~~~~~d~W~~L~~V---D~dsEVQG~v~l~l~~~e~~~~--------------------------  130 (800)
T KOG2059|consen   80 DDIIGKVAIKREDLHMYPGKDTWFSLQPV---DPDSEVQGKVHLELALTEAIQS--------------------------  130 (800)
T ss_pred             ccccceeeeeHHHHhhCCCCccceecccc---CCChhhceeEEEEEEeccccCC--------------------------
Confidence            99999999999999888889999999753   4567889999999998742211                          


Q ss_pred             ccCCCCCchhhhhhhhhhhhccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc--eeeecccccCCCCCccc
Q 008910          421 LKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE--TRNKTRVVNDCLNPIWN  498 (549)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~--~~~kT~~~~~t~nP~wn  498 (549)
                                                 .-+...+++++++.+.. ++.+|||+++...+..  +..+|.++++|.+|.||
T Consensus       131 ---------------------------~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~  182 (800)
T KOG2059|consen  131 ---------------------------SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFD  182 (800)
T ss_pred             ---------------------------CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchh
Confidence                                       11223344444555444 3448999999986532  34789999999999999


Q ss_pred             cEEEEEEecC---------------CCCeEEEEEEEC-CCCC-CceeEEEEEeccccc
Q 008910          499 QTFDFVVEDG---------------LHDMLIAEVWDH-DTFG-KRYLSRYFQNRKTWL  539 (549)
Q Consensus       499 e~f~f~v~~~---------------~~~~l~i~V~d~-~~~~-~d~lG~~~i~l~~l~  539 (549)
                      |.|.|.+...               ..-.|.+++|++ +... ++|+|++.+++..+.
T Consensus       183 Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~  240 (800)
T KOG2059|consen  183 EVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLR  240 (800)
T ss_pred             hheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhh
Confidence            9999998643               233688899984 4444 469999999999886

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.85  E-value=9.2e-21  Score=163.75  Aligned_cols=119  Identities=21%  Similarity=0.477  Sum_probs=103.1

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec-----CCCCEEEEEEEECCCC
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-----ESTQHLVVRIYDDEGI  338 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~-----~~~~~L~i~v~d~~~~  338 (549)
                      ++|+|++|+||+.++..|.+||||++.++   .++++|+++++++||+|||+|.|.+..     .....|.++|||++.+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~   77 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL   77 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence            47999999999999988999999999997   678899999999999999999999976     3567899999999998


Q ss_pred             CCCceeEEEEEECcccC--CCceeEEEEEccccccccCCCceeeEEEEEEE
Q 008910          339 QSSELIGCAQVRLCELE--PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELL  387 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~--~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~  387 (549)
                      ++|++||++.++++++.  .+.....|++|....  ....+.+|+|+++++
T Consensus        78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~--~~~~~~~Gei~l~~~  126 (126)
T cd08682          78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP--GKDDKERGEIEVDIQ  126 (126)
T ss_pred             CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC--CCCccccceEEEEeC
Confidence            88999999999999987  566778999997432  134567899999863

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.84  E-value=1.9e-20  Score=160.02  Aligned_cols=117  Identities=35%  Similarity=0.567  Sum_probs=103.0

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeC-CCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  340 (549)
                      |.|+|+|++|++|++.+..+.+||||++.++   .++++|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+ 
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-   76 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-   76 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence            7899999999999999989999999999997   5678888874 5799999999999998766678999999999875 


Q ss_pred             CceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       341 d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      |++||++.+++.++..+.....|++|..      .++..|+|+++++|
T Consensus        77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~l~f  118 (118)
T cd08681          77 PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLELTF  118 (118)
T ss_pred             CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEEEEC
Confidence            8999999999999877767789999953      34678999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=4.4e-20  Score=158.32  Aligned_cols=121  Identities=33%  Similarity=0.527  Sum_probs=107.0

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  342 (549)
                      +|+|+|++|++|+..|..|.+||||++.++  +...++|+++.++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~   77 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD   77 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence            489999999999999988999999999986  23578999999999999999999998765 468999999999988999


Q ss_pred             eeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      +||++.+++.++..+...+.|++|...    ...+..|+|++.+.|.|
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          78 FMGSAFVDLSTLELNKPTEVKLKLEDP----NSDEDLGYISLVVTLTP  121 (121)
T ss_pred             ceEEEEEEHHHcCCCCCeEEEEECCCC----CCccCceEEEEEEEECC
Confidence            999999999999988889999999642    12467899999999864

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=7.2e-20  Score=156.10  Aligned_cols=116  Identities=30%  Similarity=0.446  Sum_probs=100.9

Q ss_pred             EEEEEEEEccc---ccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910          263 TLEVKLVQAKG---LTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (549)
Q Consensus       263 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  339 (549)
                      .|.|+|++|++   |..+|..|.+||||++.++   .++.+|+++++++||+|||+|.|.+.++. ..|.|+|||++..+
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~   76 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH   76 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence            38999999999   8889999999999999997   67889999999999999999999998754 48999999999863


Q ss_pred             ------CCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEE
Q 008910          340 ------SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHL  384 (549)
Q Consensus       340 ------~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l  384 (549)
                            +|++||++.+++.++..+...+.|++|....  ....+..|+|++
T Consensus        77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~  125 (126)
T cd08379          77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC  125 (126)
T ss_pred             ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence                  8999999999999999999999999997432  123566788765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.83  E-value=1.3e-19  Score=153.24  Aligned_cols=108  Identities=23%  Similarity=0.387  Sum_probs=93.1

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEe----eCCCCeEEeeeeCCCCCCeeccEEEEEEecC---CCCEEEEEEEEC
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVR----PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDD  335 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~  335 (549)
                      .|+|+|++|++|+..+ .|.+||||++++.    +...++++|+++++|+||+|||+|.|.+...   ....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999999888 4999999999984    2233467899999999999999999999742   345799999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEcccccc
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD  371 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~  371 (549)
                      +..++|++||++.+++.++..++....|++|.+...
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~  115 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH  115 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence            987889999999999999998888999999976553

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.83  E-value=1.4e-19  Score=154.80  Aligned_cols=116  Identities=27%  Similarity=0.537  Sum_probs=102.8

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  343 (549)
                      |+|+|++|++|++.+..+.+||||++++.+.+..+++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999998889999999999874445678999999999999999999999766566899999999988 8999


Q ss_pred             eEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      ||++.+++.++..+.....|++|.+        +..|++++++.+
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L~~--------~~~g~l~~~~~~  117 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSLNP--------QGKEELEVEFLL  117 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEECCC--------CCCceEEEEEEe
Confidence            9999999999999989999999842        357888888765

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=1.8e-19  Score=157.05  Aligned_cols=119  Identities=25%  Similarity=0.464  Sum_probs=103.1

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  338 (549)
                      ...|.|+|+|++|++|++.+..|.+||||++.++   .+.++|++++++.||.|||+|.|.+.+...+.|.|+|||++..
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~   88 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF   88 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence            4679999999999999999989999999999986   6789999999999999999999999877777999999999998


Q ss_pred             CCCceeEEEEEECcccCC-----CceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          339 QSSELIGCAQVRLCELEP-----GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~-----~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      ++|++||++.+++.++..     ......|..+        ..+..|+|++++.+
T Consensus        89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~~~~  135 (136)
T cd08375          89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEEEEe
Confidence            899999999999999865     2222344444        35678999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.82  E-value=4.8e-20  Score=153.42  Aligned_cols=108  Identities=16%  Similarity=0.216  Sum_probs=92.1

Q ss_pred             cccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC-CCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910          256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (549)
Q Consensus       256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  332 (549)
                      .|....|.|+|+|++|++|+ .  .|.+||||++++.+. +..+++|+++++|+||+|||+|.|.+...  ....|.|.|
T Consensus         8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V   84 (118)
T cd08677           8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL   84 (118)
T ss_pred             EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence            34567799999999999998 3  467999999999853 33578899999999999999999998643  556899999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (549)
                      ||+|+++++++||++.++++++..+...++|..|
T Consensus        85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             EeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            9999999999999999999988666677788654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.82  E-value=1.8e-19  Score=153.40  Aligned_cols=115  Identities=29%  Similarity=0.445  Sum_probs=104.1

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  342 (549)
                      +++|+|++|++|+.++..+.+||||+++++   ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~   77 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE   77 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            478999999999999988999999999986   67789999999999999999999998766779999999999988999


Q ss_pred             eeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      +||++.+++.++..+...+.|++|.+         ..|+|++.+.|.
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~~~~~  115 (116)
T cd08376          78 FIGRCEIDLSALPREQTHSLELELED---------GEGSLLLLLTLT  115 (116)
T ss_pred             eEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEEEEec
Confidence            99999999999998888999999952         259999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=2.3e-19  Score=158.74  Aligned_cols=125  Identities=22%  Similarity=0.405  Sum_probs=106.5

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCC-CCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  341 (549)
                      .|+|+|++|++|+.++..|.+||||++.++   ++..+|+++.+ +.||+|||+|.|.+.++..+.+.|+|||++..++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d   77 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD   77 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence            389999999999999999999999999998   57889998866 69999999999999876667999999999988889


Q ss_pred             ceeEEEEEECcccCCC----ceeEEEEEccccccc---cCCCceeeEEEEEEEEee
Q 008910          342 ELIGCAQVRLCELEPG----KVKDVWLKLVKDLDV---QRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       342 ~~lG~~~v~l~~l~~~----~~~~~w~~L~~~~~~---~~~~~~~G~l~l~l~~~p  390 (549)
                      ++||++.++|.++..+    ...+.|++|.+....   .+..+.+|+|+|.+.|.+
T Consensus        78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~  133 (150)
T cd04019          78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG  133 (150)
T ss_pred             CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence            9999999999998643    456899999865321   133467899999999963

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=1.9e-19  Score=155.72  Aligned_cols=121  Identities=29%  Similarity=0.412  Sum_probs=104.0

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC---CCEEEEEEEECCCCC
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES---TQHLVVRIYDDEGIQ  339 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~---~~~L~i~v~d~~~~~  339 (549)
                      .|+|+|++|++|...+..|.+||||++.++   .+.++|+++.++.||.|||.|.|.+.++.   ...|.|.|||++..+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~   77 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG   77 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence            389999999999999988999999999987   57789999999999999999999987542   358999999999876


Q ss_pred             -CCceeEEEEEECcccC-CCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          340 -SSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       340 -~d~~lG~~~v~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                       +|++||++.++++++. .+.....|+.|.+..   ..++.+|+|++++.+.
T Consensus        78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~~  126 (127)
T cd04022          78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEEEEEc
Confidence             7999999999999987 567788999997532   2345789999998763

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.81  E-value=2.7e-19  Score=155.28  Aligned_cols=123  Identities=33%  Similarity=0.539  Sum_probs=105.9

Q ss_pred             eEEEEEEEEcccccccCC--CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910          262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  339 (549)
                      |+|+|+|++|++|+..+.  .+.+||||++.++   .++++|++++++.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~   77 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA   77 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence            789999999999999988  8899999999986   67889999999999999999999998766779999999999988


Q ss_pred             CCceeEEEEEECcccC---CCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          340 SSELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       340 ~d~~lG~~~v~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      ++++||++.+++.++.   .......|+.|..... .......|+|++++.|
T Consensus        78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~~~G~i~l~~~~  128 (128)
T cd04024          78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP-GKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCcceEEEEEHHHhhcccccCccceeEEccCccc-CccccccceEEEEEEC
Confidence            8999999999999986   3344689999975422 2334578999999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.81  E-value=5.6e-19  Score=150.89  Aligned_cols=119  Identities=29%  Similarity=0.450  Sum_probs=101.5

Q ss_pred             EEEEEEEcccccccC-CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910          264 LEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (549)
Q Consensus       264 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  342 (549)
                      |.|+|++|+||+.++ ..|.+||||++.++  ....++|+++++|+||.|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~   78 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS   78 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence            689999999999874 45789999999986  23468999999999999999999999754 468999999999999999


Q ss_pred             eeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      +||.+.++++++..+...+.|++|++..   ...+..|+|++++.+
T Consensus        79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~---~~~~~~G~i~l~~~~  121 (121)
T cd08401          79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD---ADSEVQGKVHLELRL  121 (121)
T ss_pred             eEEEEEEEHHHccCCCCcEeeEEEEccC---CCCcccEEEEEEEEC
Confidence            9999999999998888889999997542   234568999998764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.81  E-value=4.5e-19  Score=152.56  Aligned_cols=121  Identities=24%  Similarity=0.486  Sum_probs=105.4

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  342 (549)
                      .|+|+|++|++|..++..+.+||||+++++   +..++|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~   77 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND   77 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            489999999999999988899999999986   56789999999999999999999998766678999999999988899


Q ss_pred             eeEEEEEECcccCCCceeEEEEEccccccc-cCCCceeeEEEEEE
Q 008910          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDV-QRDTKYRGQVHLEL  386 (549)
Q Consensus       343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~G~l~l~l  386 (549)
                      +||++.+++.++..+...+.|+.|.+.... ...++..|.|++.+
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            999999999999877777899999764322 23567789999875

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.81  E-value=2.8e-19  Score=152.99  Aligned_cols=105  Identities=27%  Similarity=0.456  Sum_probs=93.9

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEE-e--cCCCCEEEEEEEEC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRIYDD  335 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v-~--~~~~~~L~i~v~d~  335 (549)
                      .|.|.|+|++|++|+.++ .+.+||||++++.+..  ..+++|++++++.||.|||+|.|.+ .  +.....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            589999999999999999 8999999999998654  3468999999999999999999987 2  33566899999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEc
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (549)
                      +..+++++||++.++|.++..+...+.|++|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999999888778899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.81  E-value=1e-18  Score=150.89  Aligned_cols=122  Identities=30%  Similarity=0.475  Sum_probs=104.3

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  343 (549)
                      |.|+|++|++|+.  ..|.+||||++++. ...++++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~   76 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMD-EPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF   76 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEEC-CCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence            5799999999987  67899999999986 22456899999999999999999999854 35689999999999888999


Q ss_pred             eEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910          344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  391 (549)
                      ||++.++++++..+.....|++|.+...  ...+..|+|++++.|.+.
T Consensus        77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          77 LGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             EEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEecc
Confidence            9999999999988887889999975321  235679999999999753

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.80  E-value=8.1e-19  Score=153.20  Aligned_cols=109  Identities=26%  Similarity=0.436  Sum_probs=95.8

Q ss_pred             eeEEEEEEEEcccccccC-CCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEE-ECC
Q 008910          261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DDE  336 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~-d~~  336 (549)
                      .|.|.|+|++|+||..++ ..|.+||||++++.+.+.  .++||+++++++||+|||+|.|.+. .....|.++|| |++
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~  106 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG  106 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence            589999999999999864 568899999999986543  3789999999999999999999998 56779999999 678


Q ss_pred             CCCCCceeEEEEEECcccCCCceeEEEEEccccc
Q 008910          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL  370 (549)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~  370 (549)
                      .+.++++||++.++|+++..+.....|++|.+..
T Consensus       107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~  140 (146)
T cd04028         107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS  140 (146)
T ss_pred             CCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence            8888999999999999997777788999997643

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.80  E-value=1.6e-18  Score=149.42  Aligned_cols=122  Identities=21%  Similarity=0.376  Sum_probs=102.1

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  340 (549)
                      ...|+|+|++|+||+.+   +.+||||++.++  +.+..+|++ .++.||.|||+|.|.+..+..+.+.|.|||++..++
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~   76 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK   76 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence            35799999999999875   478999999996  234578887 468999999999998765544689999999999999


Q ss_pred             CceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910          341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       341 d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      |++||++.++|.++..+...+.|+.|.+..  ....+..|+|++++.|.+
T Consensus        77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~--~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS--PLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCeEEEEEEEHhHccCCCcccEeEEcccCC--CCCCCcCcEEEEEEEEEc
Confidence            999999999999999888889999997642  124567799999999974

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.80  E-value=7.4e-19  Score=150.91  Aligned_cols=115  Identities=35%  Similarity=0.634  Sum_probs=101.7

Q ss_pred             eEEEEEEEEcccccccCC------CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 008910          262 GTLEVKLVQAKGLTNKDL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  335 (549)
                      |+|+|+|++|++|+..+.      .|.+||||+++++   ++.++|++++++.||.|||+|.|.+.+...+.|.|+|||+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~   77 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE   77 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence            789999999999998875      3689999999997   5789999999999999999999999876678999999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      +.. ++++||++.+++.++..+...+.|++|..        ...|+|++++.|
T Consensus        78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~--------~~~G~~~~~~~~  121 (121)
T cd08391          78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED--------VKSGRLHLKLEW  121 (121)
T ss_pred             CCC-CCCcEEEEEEEHHHhcccCccceEEECcC--------CCCceEEEEEeC
Confidence            987 89999999999999987777899999942        257999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.80  E-value=3.2e-19  Score=153.80  Aligned_cols=96  Identities=34%  Similarity=0.618  Sum_probs=89.5

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  339 (549)
                      ..|.|+|+|.+|.+|..+|..+++||||.+.++   +++.+|+++++++||+|||.|.|.+.++ ...|++.|||+|.++
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs   79 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFS   79 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCC
Confidence            579999999999999999988999999999998   8899999999999999999999999987 459999999999999


Q ss_pred             CCceeEEEEEECcccCCCce
Q 008910          340 SSELIGCAQVRLCELEPGKV  359 (549)
Q Consensus       340 ~d~~lG~~~v~l~~l~~~~~  359 (549)
                      +||+||.++|+|..+.....
T Consensus        80 ~dD~mG~A~I~l~p~~~~~~   99 (168)
T KOG1030|consen   80 SDDFMGEATIPLKPLLEAQK   99 (168)
T ss_pred             cccccceeeeccHHHHHHhh
Confidence            99999999999998865543

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.80  E-value=2.3e-17  Score=177.97  Aligned_cols=320  Identities=25%  Similarity=0.347  Sum_probs=212.1

Q ss_pred             cchHHHHHHHHHHHhhccccccce-------eec---cCC-CCC-Ccc-cccCceeEEEEEEEEcccccccCCCCCCCcE
Q 008910          220 PGLSDSIEATIHDAIEDSITWPVR-------KIV---PIL-PGD-YSE-LELKPVGTLEVKLVQAKGLTNKDLIGKSDPY  286 (549)
Q Consensus       220 P~l~~~~~~~i~~~i~~~~~~P~~-------~~i---p~~-~~~-~~~-~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpy  286 (549)
                      +....-+...|.......++.|.+       ++.   |+. .++ .+. ....+.|.++|.|..|.+|.+....+++|||
T Consensus       656 ~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPy  735 (1227)
T COG5038         656 ATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPY  735 (1227)
T ss_pred             ccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccc
Confidence            333334455666666666666655       111   321 111 111 1346899999999999999988888999999


Q ss_pred             EEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCC---ceeEEE
Q 008910          287 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG---KVKDVW  363 (549)
Q Consensus       287 v~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~---~~~~~w  363 (549)
                      +++.+.  +..++||-....++||.|++.....+..+ .+.+.+++.|+...+.|..+|++.++++++...   ......
T Consensus       736 a~v~~n--~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~  812 (1227)
T COG5038         736 ATVLVN--NLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMET  812 (1227)
T ss_pred             eEEEec--ceeEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEe
Confidence            999987  35678888889999999999888888776 557999999999999999999999999987541   111111


Q ss_pred             EEc---cccccccCCCceeeEEEEEEEEeecccCCccc-------------------------CCCCC--------CCCc
Q 008910          364 LKL---VKDLDVQRDTKYRGQVHLELLYCPFGMENVFT-------------------------NPFAP--------NFSM  407 (549)
Q Consensus       364 ~~L---~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~-------------------------~~~~~--------~~~~  407 (549)
                      ..=   ...+. ..+.+..|.+.+.+.|.|........                         .+...        ..+.
T Consensus       813 i~g~~~t~~l~-~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v  891 (1227)
T COG5038         813 IDGAEETGKLS-LTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV  891 (1227)
T ss_pred             ecCcccccccc-cccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence            110   01111 11456789999999999865432210                         00000        0000


Q ss_pred             ---ch---------HHHHhhccc---------------------------cc----cc----CCCCCchhhh--------
Q 008910          408 ---TS---------LEKVLTNGE---------------------------KA----LK----SGANGTEAIE--------  432 (549)
Q Consensus       408 ---~~---------~~~~~~~~~---------------------------~~----~~----~~~~~~~~~~--------  432 (549)
                         .+         +..+++-.+                           ++    ..    ....+.....        
T Consensus       892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s  971 (1227)
T COG5038         892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS  971 (1227)
T ss_pred             ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence               01         111111000                           00    00    0000000000        


Q ss_pred             ------------hhh---h--------hhhh--------------------c----------cccccccEEEEEEEEeec
Q 008910          433 ------------LEK---D--------ASQK--------------------R----------REVIIRGVLSVTVILAEN  459 (549)
Q Consensus       433 ------------~~~---~--------~~~~--------------------~----------~~~~~~g~L~v~v~~a~~  459 (549)
                                  .+.   +        .++.                    +          .....+|.|.|.+.+|.|
T Consensus       972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038         972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred             eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence                        000   0        0000                    0          001348999999999999


Q ss_pred             CCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ceeEEEEEecccc
Q 008910          460 LPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       460 L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l  538 (549)
                      |+..+.+|.+||||++.+.. +..++|+++++|+||+|||.+...+.+-..+.+.+.|+|++...+ |.||.+.+++..+
T Consensus      1052 l~~~d~ng~sDpfv~~~ln~-k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l 1130 (1227)
T COG5038        1052 LPSSDENGYSDPFVKLFLNE-KSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKL 1130 (1227)
T ss_pred             CcccccCCCCCceEEEEecc-eecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhc
Confidence            99999999999999999986 348999999999999999999999987788899999999998776 7999999999998


Q ss_pred             cccccc
Q 008910          539 LHDGSE  544 (549)
Q Consensus       539 ~~~~~~  544 (549)
                      ..++..
T Consensus      1131 ~~~~~~ 1136 (1227)
T COG5038        1131 EPGGTT 1136 (1227)
T ss_pred             CcCCcc
Confidence            766543

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.79  E-value=7e-19  Score=151.41  Aligned_cols=109  Identities=23%  Similarity=0.444  Sum_probs=95.7

Q ss_pred             CceeEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY  333 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~  333 (549)
                      +..+.|.|+|++|+||+.++.. |.+||||++++.+..  ..+++|++++++.||+|||+|.|.+..  .....|.|+||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~   91 (125)
T cd08393          12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW   91 (125)
T ss_pred             CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            4568999999999999999975 899999999998654  345799999999999999999999864  34568999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      |++..+++++||++.++|.++..+.....|++|+
T Consensus        92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            9999999999999999999998777788999873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=1.2e-18  Score=148.92  Aligned_cols=114  Identities=23%  Similarity=0.445  Sum_probs=98.4

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  342 (549)
                      .|.|+|++|++|+.+    .+||||++.++   .+..+|++++++.||+|||+|.|.+.++..+.|.++|||++.. +++
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~   72 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD   72 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence            388999999999877    78999999997   5678999999999999999999998776677999999999976 789


Q ss_pred             eeEEEEEECcccCCC-----ceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          343 LIGCAQVRLCELEPG-----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       343 ~lG~~~v~l~~l~~~-----~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      +||++.++++++...     ...+.|++|....    ..+.+|+|++++.|
T Consensus        73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~  119 (121)
T cd08378          73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF  119 (121)
T ss_pred             eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence            999999999998642     2356999997642    35788999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.79  E-value=9.1e-19  Score=150.91  Aligned_cols=110  Identities=35%  Similarity=0.559  Sum_probs=98.6

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEEC
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~  335 (549)
                      .+..|.|.|+|++|++|+.++..|.+||||++++.+.+.+.++|++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~   91 (124)
T cd08387          12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF   91 (124)
T ss_pred             CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence            345799999999999999999889999999999976656789999999999999999999998643  356899999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      +.++++++||++.++++++..+...+.|++|+
T Consensus        92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            99889999999999999998777889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.79  E-value=2.9e-18  Score=153.31  Aligned_cols=123  Identities=27%  Similarity=0.485  Sum_probs=103.9

Q ss_pred             eeEEEEEEEEcccccccC------------------------------CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCC
Q 008910          261 VGTLEVKLVQAKGLTNKD------------------------------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNP  310 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP  310 (549)
                      .|.|.|+|.+|++|+++|                              ..|.+||||++.++  +.+..+|++++++.||
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~nP   83 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSENP   83 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCCC
Confidence            599999999999999987                              24678999999997  2345799999999999


Q ss_pred             eeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          311 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       311 ~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      +|||+|.|.+.+. .+.|.|.|||++..+ +++||.+.++++++..+...+.|++|....  .+..+..|+|++++.|.
T Consensus        84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~--~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN--GKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC--CCCCCCCCEEEEEEEEC
Confidence            9999999998765 468999999999874 689999999999998888889999997542  22345578999999883

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.78  E-value=1.5e-18  Score=149.17  Aligned_cols=109  Identities=18%  Similarity=0.348  Sum_probs=95.8

Q ss_pred             cCceeEEEEEEEEcccccccCC-CCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  332 (549)
                      ....|.|.|+|++|+||+.++. .|.+||||++++.+..  ..++||++++++.||.|||+|.|.+...  ....|.|.|
T Consensus        11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V   90 (125)
T cd04029          11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV   90 (125)
T ss_pred             ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            3567999999999999998875 4789999999998654  3468899999999999999999998643  455899999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (549)
                      ||++..+++++||++.+++.++......+.|++|
T Consensus        91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          91 WHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             EECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            9999999999999999999999888889999987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.78  E-value=2.3e-18  Score=148.52  Aligned_cols=122  Identities=28%  Similarity=0.505  Sum_probs=102.1

Q ss_pred             eeEEEEEEEEcccccccC-CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910          261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  339 (549)
                      .|.|.|+|++|++|+..+ ..+.+||||++.++.. .+.++|+++.++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~   78 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR   78 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence            489999999999999765 3467999999999722 36799999999999999999999987 44679999999999988


Q ss_pred             CCceeEEEEEECcccCCCceeE-EEEEccccccccCCCceeeEEEEEEEEee
Q 008910          340 SSELIGCAQVRLCELEPGKVKD-VWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       340 ~d~~lG~~~v~l~~l~~~~~~~-~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      +|++||++.+++.++..+...+ .|..+.      .+++..|+|++++.|.|
T Consensus        79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~------~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL------RNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCceeEEEEEEHHHhccCccccCcchhhh------cCCccceEEEEEEEeCC
Confidence            9999999999999998766554 344432      35567899999999975

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.78  E-value=5.8e-18  Score=144.85  Aligned_cols=118  Identities=33%  Similarity=0.595  Sum_probs=102.2

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  341 (549)
                      |.|.|+|++|++|+..+..+.+||||++++.   ...++|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~   76 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP   76 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence            7899999999999999988999999999987   5568999999999999999999998654 46899999999988889


Q ss_pred             ceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      ++||++.+++.++..+.  ..|+.|...   ....+..|+|++++.+
T Consensus        77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~---~~~~~~~G~i~l~~~~  118 (119)
T cd08377          77 EFLGKVAIPLLSIKNGE--RKWYALKDK---KLRTRAKGSILLEMDV  118 (119)
T ss_pred             ceeeEEEEEHHHCCCCC--ceEEECccc---CCCCceeeEEEEEEEe
Confidence            99999999999987654  579998643   2244579999999876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.77  E-value=6.7e-18  Score=147.45  Aligned_cols=122  Identities=27%  Similarity=0.476  Sum_probs=102.3

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCC----CCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  338 (549)
                      .|+|+|++|++|+.++..|.+||||++++....    ...++|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence            389999999999999988999999999997321    1257899999999999999999998653 46899999999998


Q ss_pred             CCCceeEEEEEECcccCCCc------eeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          339 QSSELIGCAQVRLCELEPGK------VKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~------~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      +++++||++.+++.++..+.      ....|++|.+.   ...++..|+|++++.|
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~G~l~~~~~~  132 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR---SSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec---CCCCcceeEEEEEEee
Confidence            89999999999999986543      24689999753   2245679999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.77  E-value=3.4e-18  Score=147.36  Aligned_cols=109  Identities=32%  Similarity=0.535  Sum_probs=97.6

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  336 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~  336 (549)
                      ...|.|.|+|++|++|+.++..+.+||||++++.+...+.++|++++++.||+|||+|.|.+...  ....|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d   92 (124)
T cd08385          13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            45689999999999999999889999999999986666688999999999999999999998642  3458999999999


Q ss_pred             CCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      .++++++||++.+++.++..+...+.|++|.
T Consensus        93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            9989999999999999998888889999974

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.77  E-value=2.5e-18  Score=146.70  Aligned_cols=110  Identities=20%  Similarity=0.313  Sum_probs=95.4

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR  331 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~  331 (549)
                      |.+..+.|.|+|++|+||+.++..+.+||||++++.|+.+   .+++|++++++.||+|||+|.|.+...  ....|.+.
T Consensus         9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~   88 (124)
T cd08680           9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD   88 (124)
T ss_pred             ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence            4456799999999999999998888999999999987663   478999999999999999999998643  56689999


Q ss_pred             EEECCCCCCCceeEEEEEECcccCCC-ceeEEEEEc
Q 008910          332 IYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKL  366 (549)
Q Consensus       332 v~d~~~~~~d~~lG~~~v~l~~l~~~-~~~~~w~~L  366 (549)
                      |||++..+++++||++.++|.++... .....|++|
T Consensus        89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            99999999999999999999998544 456778865

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.77  E-value=4.6e-18  Score=149.45  Aligned_cols=106  Identities=24%  Similarity=0.342  Sum_probs=90.0

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEe---------------cCCC
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---------------DEST  325 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~---------------~~~~  325 (549)
                      .|.|+|++|++|..  ..|.+||||++++.+..  .++++|++++++.||+|||+|.|.+.               +...
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            37899999999997  46899999999998432  25688999999999999999999985               1223


Q ss_pred             CEEEEEEEECCCCCCCceeEEEEEECcccCCC-ceeEEEEEccccc
Q 008910          326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKLVKDL  370 (549)
Q Consensus       326 ~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~-~~~~~w~~L~~~~  370 (549)
                      ..|.|.|||++..++|++||++.+++.++..+ .....||+|.+..
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~  124 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE  124 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence            57999999999888999999999999999876 5678999997653

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.76  E-value=7e-18  Score=140.45  Aligned_cols=90  Identities=17%  Similarity=0.244  Sum_probs=77.8

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC--CceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEECC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK--SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~  521 (549)
                      ..+.|+|+|++|+||+ .  .|.+||||++++..  +..+++|+++++|+||+|||+|.|.+..  .....|.++|||+|
T Consensus        12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D   88 (118)
T cd08677          12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD   88 (118)
T ss_pred             cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence            3488999999999998 2  35689999999953  3357799999999999999999999864  35568999999999


Q ss_pred             CCCC-ceeEEEEEecccc
Q 008910          522 TFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l  538 (549)
                      .+++ |+||++.+++.++
T Consensus        89 rfs~~d~IG~v~l~l~~~  106 (118)
T cd08677          89 RFSRHSTLGELRLKLADV  106 (118)
T ss_pred             CCCCCceEEEEEEccccc
Confidence            9987 7999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.76  E-value=6.5e-18  Score=145.82  Aligned_cols=110  Identities=21%  Similarity=0.291  Sum_probs=93.9

Q ss_pred             cCceeEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEE-Ee--cCCCCEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VE--DESTQHLVVRIY  333 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~-v~--~~~~~~L~i~v~  333 (549)
                      ....+.|.|+|++|++|+..+.. +.+||||++.+.+...+++||++++++.||.|||+|.|. +.  +.....|.++||
T Consensus        12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~   91 (128)
T cd08388          12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL   91 (128)
T ss_pred             ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence            34568999999999999998876 899999999998766677899999999999999999993 43  223457999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCC--ceeEEEEEcc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLV  367 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~  367 (549)
                      |++.+++|++||++.++|.++...  .....|++|+
T Consensus        92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             EcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            999999999999999999998543  6678999885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.76  E-value=2.5e-18  Score=144.84  Aligned_cols=103  Identities=26%  Similarity=0.511  Sum_probs=89.6

Q ss_pred             eEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC---CCCEEEEEEEECCC
Q 008910          262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG  337 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~  337 (549)
                      |+|+|+|++|++|+..+.. +.+||||++++.+.+...++|+++++++||+|||+|.|.+...   ..+.|.++|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            7899999999999999987 8999999999975445678999999999999999999987643   34689999999999


Q ss_pred             CCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      .++|++||++.+++.++..   ...|+++.
T Consensus        81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE---DRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence            9899999999999999873   35677653

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.76  E-value=7.1e-18  Score=145.19  Aligned_cols=109  Identities=20%  Similarity=0.421  Sum_probs=93.8

Q ss_pred             cCceeEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  332 (549)
                      ....+.|.|+|++|+||+.++.. |.+||||++++.|..  ..++||++++++.||+|||+|.|.+...  ....|.+.|
T Consensus        11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V   90 (128)
T cd08392          11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV   90 (128)
T ss_pred             eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence            34568999999999999999875 899999999998765  3467999999999999999999998643  356899999


Q ss_pred             EECCCCCCCceeEEEEEECcccCC---CceeEEEEEc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEP---GKVKDVWLKL  366 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~---~~~~~~w~~L  366 (549)
                      ||++.++++++||++.|+|.++..   +.....||+|
T Consensus        91 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          91 WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            999998999999999999999854   3456789987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.76  E-value=2.2e-17  Score=142.48  Aligned_cols=123  Identities=17%  Similarity=0.282  Sum_probs=103.1

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  339 (549)
                      |.++|+|+|++|++|...+..|.+||||++.++   ++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++.. 
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~-   75 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL-   75 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence            468999999999999999988999999999987   6689999999999999999999988765 56899999999886 


Q ss_pred             CCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910          340 SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       340 ~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      .|++||++.+++.++..  ....|+.|.+... ...++..|+|.+++.+.+
T Consensus        76 ~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          76 CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEEEEEcc
Confidence            58999999999987643  3346677753322 346688999999998753

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.76  E-value=1.2e-17  Score=142.92  Aligned_cols=118  Identities=26%  Similarity=0.520  Sum_probs=99.5

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  343 (549)
                      |.|+|++|++|++++..|.+||||++.++  +...++|+++.++.||.|||.|.|.+... .+.|.|+|||++..++|++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~   78 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV   78 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence            78999999999999999999999999986  23357999999999999999999998643 4689999999999999999


Q ss_pred             eEEEEEECcccCCC-ceeEEEEEccccccccCCCceeeEEEEEEE
Q 008910          344 IGCAQVRLCELEPG-KVKDVWLKLVKDLDVQRDTKYRGQVHLELL  387 (549)
Q Consensus       344 lG~~~v~l~~l~~~-~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~  387 (549)
                      ||++.+++.++..+ ...+.|++|.+.   .......|+|++.+.
T Consensus        79 iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~~~  120 (121)
T cd04054          79 IGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEEEE
Confidence            99999999888653 346899999643   223456899988764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.75  E-value=2.4e-17  Score=143.98  Aligned_cols=120  Identities=22%  Similarity=0.398  Sum_probs=100.2

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC---------CCCEEEEEEE
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVRIY  333 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---------~~~~L~i~v~  333 (549)
                      .|+|+|++|++|+.+|..|.+||||++.++   +++++|++++++.||.|||+|.|.+...         ....+.++||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~   78 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF   78 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence            589999999999999999999999999997   6788999999999999999999975432         1247999999


Q ss_pred             ECCCCCCCceeEEEEE-ECcccC---CCceeEEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910          334 DDEGIQSSELIGCAQV-RLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v-~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  391 (549)
                      |++..++|++||++.+ ++..+.   .+.....|++|.+      .+...|+|.+++.+.+.
T Consensus        79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~~  134 (135)
T cd04017          79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIEV  134 (135)
T ss_pred             eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEEe
Confidence            9999889999999986 444443   3466789999953      34578999999999863

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.75  E-value=7.4e-18  Score=143.34  Aligned_cols=106  Identities=25%  Similarity=0.471  Sum_probs=91.0

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC-CCCEEEEEEEECC
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  336 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~  336 (549)
                      ..|.|.|+|++|+||+.++ .|.+||||++++.+...  .++||++++++.||+|||+|.|.+... ....|.|.|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            3589999999999999998 78999999999987543  356899999999999999999998643 2346889999999


Q ss_pred             CCC-CCceeEEEEEECcccCCCceeEEEEEc
Q 008910          337 GIQ-SSELIGCAQVRLCELEPGKVKDVWLKL  366 (549)
Q Consensus       337 ~~~-~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (549)
                      ... ++++||++.+++.++..+...+.||.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            765 478999999999999877778899975

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.75  E-value=1.8e-17  Score=142.74  Aligned_cols=103  Identities=25%  Similarity=0.467  Sum_probs=86.0

Q ss_pred             ccEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~-g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|+||+..+.. |.+||||++++...   ..++||++++++.||+|||+|.|.+...  ....|.+.|||.
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~   93 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS   93 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence            37899999999999998865 89999999999532   3477999999999999999999998643  346899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccc--cccceecC
Q 008910          521 DTFGK-RYLSRYFQNRKTWLHD--GSEALRLF  549 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~--~~~~~~~~  549 (549)
                      +.+++ ++||++.|++.++--.  +.....||
T Consensus        94 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~  125 (128)
T cd08392          94 RTLKRRVFLGEVLIPLADWDFEDTDSQRFLWY  125 (128)
T ss_pred             CCCcCcceEEEEEEEcCCcccCCCCccccceE
Confidence            98766 6999999999998333  45666665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=1e-17  Score=139.69  Aligned_cols=99  Identities=31%  Similarity=0.417  Sum_probs=89.6

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  343 (549)
                      |.|+|++|++|+..+..+.+||||+++++   ++.++|++++++.||.|||+|.|.+.++..+.|.|+|||++.   +++
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~   75 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKS   75 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCc
Confidence            78999999999999888999999999998   588999999999999999999999998777799999999986   789


Q ss_pred             eEEEEEECcccCCC--ceeEEEEEccc
Q 008910          344 IGCAQVRLCELEPG--KVKDVWLKLVK  368 (549)
Q Consensus       344 lG~~~v~l~~l~~~--~~~~~w~~L~~  368 (549)
                      ||++.++|.++...  ...+.|++|..
T Consensus        76 iG~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          76 LGSLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             cEEEEEEHHHhhccccceeeeeEecCC
Confidence            99999999998654  36789999953

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.75  E-value=1.4e-17  Score=143.84  Aligned_cols=110  Identities=25%  Similarity=0.421  Sum_probs=97.0

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec---CCCCEEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYD  334 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d  334 (549)
                      ....+.|.|+|++|++|+..+..+.+||||++++.+...+..+|++++++.||.|||+|.|.+..   .....|.++|||
T Consensus        12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d   91 (125)
T cd08386          12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD   91 (125)
T ss_pred             CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence            34678999999999999999988999999999997655677899999999999999999997532   234579999999


Q ss_pred             CCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      ++..+++++||++.++++++..+...+.|+.|.
T Consensus        92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             CCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            999889999999999999998888889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.75  E-value=2.5e-17  Score=143.47  Aligned_cols=115  Identities=24%  Similarity=0.458  Sum_probs=100.1

Q ss_pred             eeEEEEEEEEcccccccCCC----------CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEE
Q 008910          261 VGTLEVKLVQAKGLTNKDLI----------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV  330 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i  330 (549)
                      .|.|+|+|++|++|...+..          +.+||||++.++  +.+..+|+++.++.||.|||+|.|.+.  ....|.|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~   78 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL   78 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence            48999999999999988762          579999999997  234578999999999999999999996  3468999


Q ss_pred             EEEECCCCCCCceeEEEEEECcccCC--CceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          331 RIYDDEGIQSSELIGCAQVRLCELEP--GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       331 ~v~d~~~~~~d~~lG~~~v~l~~l~~--~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      .|||++..+++++||++.++|.++..  +...+.|++|.          ..|+|++.+.|.
T Consensus        79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~~~~~  129 (132)
T cd04014          79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVKIELK  129 (132)
T ss_pred             EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEEEEEe
Confidence            99999988889999999999999876  56789999984          359999999986

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.75  E-value=1e-17  Score=143.82  Aligned_cols=110  Identities=30%  Similarity=0.404  Sum_probs=97.1

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEE-Eec--CCCCEEEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIY  333 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~-v~~--~~~~~L~i~v~  333 (549)
                      +....+.|.|+|++|+||+..+..|.+||||++.+.+...++++|+++++ .||+|||+|.|. +..  .....|.++||
T Consensus        11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~   89 (124)
T cd08389          11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY   89 (124)
T ss_pred             ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence            33566899999999999999998899999999998877677889998887 999999999998 542  24568999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      |++.++++++||++.++|+++..+.....|++|+
T Consensus        90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             ECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            9999999999999999999998888899999985

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.75  E-value=2.2e-17  Score=141.26  Aligned_cols=93  Identities=31%  Similarity=0.431  Sum_probs=81.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEE-e--cCCCCeEEEEEEECC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVV-E--DGLHDMLIAEVWDHD  521 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v-~--~~~~~~l~i~V~d~~  521 (549)
                      +.|.|.|++|+||+..+ .+.+||||++++..   ...++||++++++.||.|||+|.|.+ .  +.....|.|+|||++
T Consensus        13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            77999999999999999 88999999999963   23578999999999999999999987 2  335568999999999


Q ss_pred             CCCC-ceeEEEEEeccccccc
Q 008910          522 TFGK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~  541 (549)
                      .+++ ++||++.+++.++...
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~  112 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLS  112 (122)
T ss_pred             CCcCCcEEEEEEEeccccccC
Confidence            8876 6999999999998644

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.75  E-value=2.8e-17  Score=141.11  Aligned_cols=118  Identities=26%  Similarity=0.533  Sum_probs=98.2

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC--C
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS--S  341 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~--d  341 (549)
                      |+|+|++|++|+.++..+.+||||++++.  +.+.++|++++++.||.|||+|.|.+..  .+.|.|+|||++..+.  |
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d   77 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ   77 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence            78999999999999988999999999985  3667899999999999999999999964  6799999999998765  5


Q ss_pred             ceeEEEEEECcccCCCc-eeEEEEEccccccccCCCceeeEEEEEE
Q 008910          342 ELIGCAQVRLCELEPGK-VKDVWLKLVKDLDVQRDTKYRGQVHLEL  386 (549)
Q Consensus       342 ~~lG~~~v~l~~l~~~~-~~~~w~~L~~~~~~~~~~~~~G~l~l~l  386 (549)
                      ++||++.+++.++.... ....|++|.+... .......|+|.+++
T Consensus        78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~-~~~~~~~G~v~~~~  122 (123)
T cd08382          78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLKK-SDNLSVRGKIVVSL  122 (123)
T ss_pred             ceEeEEEEEHHHccccCCCccceeEeecCCC-CCCceEeeEEEEEe
Confidence            89999999999986544 3477999854321 23456689888865

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.75  E-value=3.4e-17  Score=141.65  Aligned_cols=116  Identities=31%  Similarity=0.468  Sum_probs=100.7

Q ss_pred             EEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCCCCceeE
Q 008910          268 LVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSSELIG  345 (549)
Q Consensus       268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d~~lG  345 (549)
                      |++|++|+.  ..|.+||||++++.   +..++|++++++.||+|||+|.|.+...  ..+.|.|+|||++..++|++||
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG   76 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG   76 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence            678999998  67899999999997   5678999999999999999999999764  4678999999999988999999


Q ss_pred             EEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeecc
Q 008910          346 CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  392 (549)
Q Consensus       346 ~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~  392 (549)
                      ++.++++++..+.....|++|....    .....|+|++++.|.|..
T Consensus        77 ~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~~~l~l~~~~~~~~  119 (127)
T cd08373          77 SATVSLQDLVSEGLLEVTEPLLDSN----GRPTGATISLEVSYQPPD  119 (127)
T ss_pred             EEEEEhhHcccCCceEEEEeCcCCC----CCcccEEEEEEEEEeCCC
Confidence            9999999999888889999996421    233579999999999753

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.75  E-value=3.1e-17  Score=141.84  Aligned_cols=117  Identities=26%  Similarity=0.461  Sum_probs=100.2

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  342 (549)
                      .|+|+|++|++|+..+..+.+||||++.....+.+.++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            57899999999999998899999999987633345689999999999999999999998765678999999999888899


Q ss_pred             eeEEEEEECcccCC---CceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          343 LIGCAQVRLCELEP---GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       343 ~lG~~~v~l~~l~~---~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      +||++.+++.++..   +...+.|+.|.          ..|++++.+.+.
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~  121 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSME  121 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEe
Confidence            99999999987632   44678999984          258999998885

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.75  E-value=3.3e-17  Score=143.12  Aligned_cols=100  Identities=22%  Similarity=0.303  Sum_probs=82.4

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEE-ECCC
Q 008910          448 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW-DHDT  522 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~-d~~~  522 (549)
                      +.|.|+|++|+||+..+ ..|.+||||++++...   ..++||+++++|+||+|||+|.|.+. ..+..|.|+|| |++.
T Consensus        29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~  107 (146)
T cd04028          29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCC
Confidence            67999999999999864 5678999999999532   24789999999999999999999998 56778999999 5666


Q ss_pred             CCC-ceeEEEEEeccccccccccceecC
Q 008910          523 FGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +++ ++||++.|+++++ +.+.....||
T Consensus       108 ~~~~~~iG~~~i~L~~l-~~~~~~~~Wy  134 (146)
T cd04028         108 MDKKVFMGVAQILLDDL-DLSNLVIGWY  134 (146)
T ss_pred             CCCCceEEEEEEEcccc-cCCCCceeEE
Confidence            655 6999999999997 3333445554

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.74  E-value=1.5e-17  Score=138.73  Aligned_cols=94  Identities=15%  Similarity=0.294  Sum_probs=82.3

Q ss_pred             eEEEEEEEEcccccccCCC----CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC-CCEEEEEEEECC
Q 008910          262 GTLEVKLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDE  336 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~  336 (549)
                      |+|.|+|++|++|+..+..    +.+||||+++++   ++.+||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d   77 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD   77 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence            7899999999999987642    358999999986   67889999999999999999999987543 347999999999


Q ss_pred             CCCCCceeEEEEEECcccCCCc
Q 008910          337 GIQSSELIGCAQVRLCELEPGK  358 (549)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~  358 (549)
                      ..++|++||++.++|+++..+.
T Consensus        78 ~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          78 KFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCCCCcceEEEEEEHHHHHhhC
Confidence            9999999999999999986543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.74  E-value=3.8e-17  Score=140.58  Aligned_cols=101  Identities=28%  Similarity=0.476  Sum_probs=83.7

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEECC
Q 008910          448 GVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~-g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~  521 (549)
                      +.|.|+|++|+||+..+.. |.+||||++++...   ..++||++++++.||+|||+|.|.+..  .....|.++|||++
T Consensus        15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~   94 (125)
T cd08393          15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD   94 (125)
T ss_pred             CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCC
Confidence            6799999999999999875 88999999999532   346799999999999999999999863  24468999999999


Q ss_pred             CCCC-ceeEEEEEeccccccccccceecC
Q 008910          522 TFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      ..++ ++||++.+++.++-.. .....||
T Consensus        95 ~~~~~~~iG~~~i~L~~~~~~-~~~~~W~  122 (125)
T cd08393          95 SLGRNSFLGEVEVDLGSWDWS-NTQPTWY  122 (125)
T ss_pred             CCCCCcEeEEEEEecCccccC-CCCcceE
Confidence            8876 6999999999998433 3334454

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.74  E-value=2.7e-17  Score=142.46  Aligned_cols=108  Identities=26%  Similarity=0.448  Sum_probs=95.2

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  334 (549)
                      ...+.|.|+|++|+||+..+..+.+||||++++.+.+  ..+++|++++++.||+|||+|.|.+...  ....|.+.|||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~   92 (127)
T cd04030          13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN   92 (127)
T ss_pred             CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence            4568999999999999999988999999999997543  4578999999999999999999998543  44689999999


Q ss_pred             CCCC--CCCceeEEEEEECcccCCCceeEEEEEc
Q 008910          335 DEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL  366 (549)
Q Consensus       335 ~~~~--~~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (549)
                      ++..  +++++||++.+++.++..+.....|++|
T Consensus        93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             CCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            9875  6899999999999999887888999987

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.73  E-value=4.3e-17  Score=140.27  Aligned_cols=110  Identities=25%  Similarity=0.361  Sum_probs=97.3

Q ss_pred             cCceeEEEEEEEEcccccccC-CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  334 (549)
                      .+..+.|.|+|++|++|+.++ ..+.+||||++++.+...+.++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d   89 (123)
T cd08390          10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD   89 (123)
T ss_pred             CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence            356789999999999999998 678999999999976656678999999999999999999998653  23579999999


Q ss_pred             CCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      ++..+++++||++.++|.++........|++|.
T Consensus        90 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          90 VDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             CCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            999888999999999999998888889999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.73  E-value=6e-17  Score=139.91  Aligned_cols=115  Identities=32%  Similarity=0.642  Sum_probs=96.9

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC----
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI----  338 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~----  338 (549)
                      .|+|+|++|++|+..|..|.+||||+++++   ...++|+++.++.||.|||+|.|.+..+ ...|.|+|||+|..    
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~   77 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR   77 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence            689999999999999988999999999986   5678999999999999999999988654 46899999999852    


Q ss_pred             -------CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEE
Q 008910          339 -------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL  386 (549)
Q Consensus       339 -------~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l  386 (549)
                             +.+++||++.+++.++..  ..+.|+.|.+..   ......|+|.+++
T Consensus        78 ~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~---~~~~~~G~i~~~~  127 (127)
T cd04027          78 LKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRT---DKSAVSGAIRLHI  127 (127)
T ss_pred             cceeccccCCCcceEEEEEhHHccC--CCCeEEECccCC---CCCcEeEEEEEEC
Confidence                   468999999999998753  357999997542   2446789998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.73  E-value=2.8e-17  Score=141.52  Aligned_cols=108  Identities=20%  Similarity=0.458  Sum_probs=94.2

Q ss_pred             CceeEEEEEEEEcccccccC-CCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~  333 (549)
                      ...|.|.|+|++|+||+..+ ..+.+||||++++.+...  .+++|++++++.||+|||+|.|.+...  ....|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            45689999999999999988 678999999999975433  468999999999999999999998643  3558999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (549)
                      |++..+++++||++.+++.++..+...+.|++|
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999988999999999999999777778899986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.72  E-value=6.9e-17  Score=137.80  Aligned_cols=104  Identities=14%  Similarity=0.183  Sum_probs=87.4

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC----ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEE
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWD  519 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d  519 (549)
                      ..+.|.|+|++|+||+..+..|.+||||++++-..    ..++||++++++.||+|||+|.|.+...  .+..|.++|||
T Consensus        12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~   91 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS   91 (124)
T ss_pred             CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence            34789999999999999888889999999998422    2478999999999999999999998632  55689999999


Q ss_pred             CCCCCC-ceeEEEEEeccccccccccceecC
Q 008910          520 HDTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      .+..++ ++||.+.|++.++-..+.....||
T Consensus        92 ~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy  122 (124)
T cd08680          92 VGPDQQEECLGGAQISLADFESSEEMSTKWY  122 (124)
T ss_pred             CCCCCceeEEEEEEEEhhhccCCCccccccc
Confidence            998776 699999999999955544566665

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.72  E-value=4e-17  Score=140.97  Aligned_cols=108  Identities=24%  Similarity=0.437  Sum_probs=91.1

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC---CCCEEEEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIY  333 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~  333 (549)
                      ...|.|.|+|++|++|...+..+.+||||++++.+..  ..+++|++++++.||+|||+|.|.+...   ....|.|+||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            4568999999999999999988999999999997432  3578899999999999999999986432   4568999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      |++..+++++||++.++|++.. ......|++|+
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            9999889999999999999832 23346899873

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.72  E-value=4e-17  Score=141.61  Aligned_cols=91  Identities=27%  Similarity=0.350  Sum_probs=77.5

Q ss_pred             ccEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEE
Q 008910          447 RGVLSVTVILAENLPASDL--MGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWD  519 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~--~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d  519 (549)
                      .+.|.|.|++|+||+..+.  .+.+||||++++..   +..++||+++++++||+|||.|.|.++..  .+..|.|+|||
T Consensus        14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d   93 (138)
T cd08407          14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN   93 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence            4789999999999999873  34589999999854   23467999999999999999999998743  45689999999


Q ss_pred             CCCCCC-ceeEEEEEeccc
Q 008910          520 HDTFGK-RYLSRYFQNRKT  537 (549)
Q Consensus       520 ~~~~~~-d~lG~~~i~l~~  537 (549)
                      ++.+++ |+||++.+++..
T Consensus        94 ~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          94 QDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             CCCCcCcceeceEEecCcC
Confidence            999886 699999999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.72  E-value=1.8e-17  Score=142.95  Aligned_cols=95  Identities=37%  Similarity=0.600  Sum_probs=87.1

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  525 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~  525 (549)
                      ..|.|.|.|.+|.||...|..+++||||.+.+++  ++.||+++++++||+|||.|+|.+.++ +..|.++|||+|.++.
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~--q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~   80 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN--QKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS   80 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEECC--eeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence            4599999999999999999889999999999998  888999999999999999999999985 4679999999999986


Q ss_pred             -ceeEEEEEeccccccccc
Q 008910          526 -RYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       526 -d~lG~~~i~l~~l~~~~~  543 (549)
                       |+||.++|++..+++.+.
T Consensus        81 dD~mG~A~I~l~p~~~~~~   99 (168)
T KOG1030|consen   81 DDFMGEATIPLKPLLEAQK   99 (168)
T ss_pred             ccccceeeeccHHHHHHhh
Confidence             799999999999977554

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.72  E-value=9.2e-17  Score=138.04  Aligned_cols=95  Identities=25%  Similarity=0.470  Sum_probs=80.6

Q ss_pred             ccEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASDL-MGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~-~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|+||+..+. .|.+||||++++...   ..++||++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~   93 (125)
T cd04029          14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY   93 (125)
T ss_pred             CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence            4789999999999998765 478999999998531   3467999999999999999999998642  455899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccc
Q 008910          521 DTFGK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~  541 (549)
                      +..++ ++||++.+++.++-.+
T Consensus        94 ~~~~~~~~lG~~~i~l~~~~~~  115 (125)
T cd04029          94 DRFGRNTFLGEVEIPLDSWNFD  115 (125)
T ss_pred             CCCCCCcEEEEEEEeCCccccc
Confidence            98876 6999999999998554

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.72  E-value=8.1e-17  Score=138.71  Aligned_cols=102  Identities=23%  Similarity=0.327  Sum_probs=86.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~  523 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++.. ....++|++++++.||.|||+|.|.+...  ....|.|+|||++.+
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~   94 (124)
T cd08387          15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF   94 (124)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence            478999999999999999889999999999952 24578999999999999999999998643  346899999999988


Q ss_pred             CC-ceeEEEEEeccccccccccceecC
Q 008910          524 GK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      ++ ++||++.++++++...+ ....||
T Consensus        95 ~~~~~iG~~~i~l~~~~~~~-~~~~W~  120 (124)
T cd08387          95 SRDECIGVVELPLAEVDLSE-KLDLWR  120 (124)
T ss_pred             CCCceeEEEEEecccccCCC-CcceEE
Confidence            75 69999999999997655 444454

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.72  E-value=3.8e-17  Score=137.44  Aligned_cols=101  Identities=27%  Similarity=0.472  Sum_probs=89.3

Q ss_pred             EEEEEEEcccccccCC-CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCee-ccEEEEEEecC--CCCEEEEEEEECCCCC
Q 008910          264 LEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIW-NEHFEFIVEDE--STQHLVVRIYDDEGIQ  339 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w-~e~f~f~v~~~--~~~~L~i~v~d~~~~~  339 (549)
                      |.|+|++|++|+.++. .|.+||||+++++   .++++|++++++.||.| ||+|.|.+...  ..+.|.|+|||++..+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~   77 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS   77 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence            5799999999999884 6889999999997   47899999999999999 99999998754  3468999999999988


Q ss_pred             CCceeEEEEEECcccCC---CceeEEEEEcc
Q 008910          340 SSELIGCAQVRLCELEP---GKVKDVWLKLV  367 (549)
Q Consensus       340 ~d~~lG~~~v~l~~l~~---~~~~~~w~~L~  367 (549)
                      ++++||++.+++.++..   +...+.||+|.
T Consensus        78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            99999999999999866   44578899985

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.72  E-value=5.9e-17  Score=142.84  Aligned_cols=103  Identities=39%  Similarity=0.712  Sum_probs=90.4

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--------------------------CCeEEeeeeCCCCCCee
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--------------------------EKTKKSKTINNDLNPIW  312 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--------------------------~~~~kT~~~~~t~nP~w  312 (549)
                      ++.+.|.|+|++|++|.++|..|.+||||++.+.+..                          .+.++|+++.+++||.|
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W  104 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW  104 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence            5789999999999999999999999999999986421                          13478999999999999


Q ss_pred             ccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEc
Q 008910          313 NEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  366 (549)
Q Consensus       313 ~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L  366 (549)
                      ||+|.|.+.+...+.|.|+|||++    +++||++.++++++.. ...+.|+.|
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999998766779999999997    7899999999999984 456899876

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.71  E-value=8.5e-17  Score=136.34  Aligned_cols=98  Identities=21%  Similarity=0.382  Sum_probs=82.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccC-CCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-  525 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-  525 (549)
                      |.|.|+|++|++++..+ .|++||||++.+++  .+.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+++ 
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~--~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d   77 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH--AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD   77 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECC--EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence            78999999999988777 78999999999987  6779999875 79999999999999754 3579999999999886 


Q ss_pred             ceeEEEEEeccccccccccceecC
Q 008910          526 RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       526 d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      ++||.+.+++.+.+..+...-.||
T Consensus        78 d~iG~~~i~l~~~~~~g~~~~~W~  101 (121)
T cd04016          78 ERIAWTHITIPESVFNGETLDDWY  101 (121)
T ss_pred             ceEEEEEEECchhccCCCCccccE
Confidence            699999999975445554444443

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.71  E-value=1e-16  Score=139.27  Aligned_cols=91  Identities=26%  Similarity=0.267  Sum_probs=78.1

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++..   ...++||+++++++||+|||+|.|.+...  .+..|.|+|||++
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d   93 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST   93 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence            367999999999999999889999999999943   22367899999999999999999998642  4568999999999


Q ss_pred             CCCC-ceeEEEEEeccc
Q 008910          522 TFGK-RYLSRYFQNRKT  537 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~  537 (549)
                      ..++ ++||++.|+...
T Consensus        94 ~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          94 EDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             CCCCCCeeEEEEECCCC
Confidence            8776 699999997764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.71  E-value=1.1e-16  Score=136.21  Aligned_cols=100  Identities=24%  Similarity=0.423  Sum_probs=84.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECCCC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF  523 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~~~  523 (549)
                      +.|.|+|++|+||+..+ .|.+||||++++...   ..++||+++.++.||.|||+|.|.+... ....|.|+|||++..
T Consensus        12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~   90 (119)
T cd08685          12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK   90 (119)
T ss_pred             CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence            78999999999999988 788999999999642   3467999999999999999999998642 234789999999876


Q ss_pred             C--CceeEEEEEeccccccccccceecC
Q 008910          524 G--KRYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       524 ~--~d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      .  +++||++.|++.++. .+.....||
T Consensus        91 ~~~~~~lG~~~i~l~~~~-~~~~~~~Wy  117 (119)
T cd08685          91 SRDSGLLGCMSFGVKSIV-NQKEISGWY  117 (119)
T ss_pred             cCCCEEEEEEEecHHHhc-cCccccceE
Confidence            4  369999999999997 455567776

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.71  E-value=1.1e-16  Score=137.93  Aligned_cols=104  Identities=39%  Similarity=0.644  Sum_probs=93.0

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeC-CCCCCeeccEEEEEEecC---CCCEEEEEEEECCC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG  337 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~  337 (549)
                      |.|.|+|++|++|++.+..+.+||||++++.   .+.++|+++. ++.||.|||+|.|.+..+   ..+.|.|+|||++.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN   77 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence            7899999999999999888999999999986   5667888876 489999999999999876   35689999999999


Q ss_pred             CCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      .++|++||++.+++.++..+...+.|+.|.+
T Consensus        78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p  108 (124)
T cd04049          78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP  108 (124)
T ss_pred             CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence            8889999999999999988778899999865

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.70  E-value=2.1e-16  Score=134.28  Aligned_cols=113  Identities=35%  Similarity=0.559  Sum_probs=97.7

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  343 (549)
                      |+|+|++|++|+..+..+.+||||++.+.  +.+.++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~   78 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL   78 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence            57999999999999888899999999986  2456899999999999999999999987666799999999998888999


Q ss_pred             eEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEE
Q 008910          344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVH  383 (549)
Q Consensus       344 lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~  383 (549)
                      ||++.+++.++..+...+.|++|.+     +++...|.+.
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~-----~g~~~~~~~~  113 (115)
T cd04040          79 LGSAYIDLSDLEPEETTELTLPLDG-----QGGGKLGAVF  113 (115)
T ss_pred             eEEEEEEHHHcCCCCcEEEEEECcC-----CCCccCceEE
Confidence            9999999999988888899999963     2344556654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.70  E-value=1e-16  Score=136.76  Aligned_cols=91  Identities=27%  Similarity=0.383  Sum_probs=81.0

Q ss_pred             EEEEEEEEeec---CCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC--
Q 008910          449 VLSVTVILAEN---LPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF--  523 (549)
Q Consensus       449 ~L~v~v~~a~~---L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~--  523 (549)
                      .|+|+|++|++   |+.++..|.+||||.+++++  ++.||++++++.||+|||+|.|.+.++. ..|.|+|||++..  
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~--~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~   77 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP--KWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHW   77 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECC--EEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCccc
Confidence            38999999999   88889999999999999987  7889999999999999999999998644 5899999999886  


Q ss_pred             -----CCceeEEEEEecccccccc
Q 008910          524 -----GKRYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       524 -----~~d~lG~~~i~l~~l~~~~  542 (549)
                           ++++||++.+++.++....
T Consensus        78 ~~~~~~dd~lG~~~i~l~~l~~~~  101 (126)
T cd08379          78 KEAVQPDVLIGKVRIRLSTLEDDR  101 (126)
T ss_pred             cccCCCCceEEEEEEEHHHccCCC
Confidence                 4579999999999986543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.70  E-value=9.6e-17  Score=144.03  Aligned_cols=110  Identities=21%  Similarity=0.373  Sum_probs=94.9

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC--CCCeEEeeeeCCCCCCeeccEEEEEEec---CCCCEEEEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  333 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~  333 (549)
                      .+.|.|.|+|++|+||+..+..+.+||||++++.+.  +..+++|++++++.||.|||+|.|.+..   .....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            467999999999999999998899999999998743  2457899999999999999999998532   23457999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      |++.++++++||++.+++.++......+.|+.+..
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            99999889999999999999877667788988743

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.70  E-value=8.8e-17  Score=138.72  Aligned_cols=115  Identities=27%  Similarity=0.488  Sum_probs=97.3

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeC-CCCCCeeccEEEEEEecCC----CCEEEEEEEECCC
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG  337 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~  337 (549)
                      .|+|+|++|++|+..+..+.+||||+++++.  .+.++|+++. ++.||.|||.|.|.+....    ...|.|+|||++.
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~   78 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP   78 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence            4789999999999998889999999999972  3678888874 6899999999999997663    5789999999998


Q ss_pred             CCCCceeEEEEEECcccCCCce-----eEEEEEccccccccCCCceeeEEEE
Q 008910          338 IQSSELIGCAQVRLCELEPGKV-----KDVWLKLVKDLDVQRDTKYRGQVHL  384 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~G~l~l  384 (549)
                      .+.|++||++.+++.++..+..     ...|+.|.+.     .++..|.|++
T Consensus        79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-----~g~~~G~~~~  125 (125)
T cd04051          79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-----SGKPQGVLNF  125 (125)
T ss_pred             CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-----CCCcCeEEeC
Confidence            8889999999999999875543     4789999742     4678898874

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.70  E-value=4.2e-16  Score=137.12  Aligned_cols=123  Identities=21%  Similarity=0.270  Sum_probs=98.5

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEe-e-CCCCeEEeeeeCCCCCCeeccEEEEEEecCC--------CCEEEEE
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR-P-LPEKTKKSKTINNDLNPIWNEHFEFIVEDES--------TQHLVVR  331 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~-~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~--------~~~L~i~  331 (549)
                      |.|.|....+.+|+..+..+.+||||++++. + ...++.||+++++|+||+|||+|.|.+....        ...|.++
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            4455554444447788877899999999973 2 4456899999999999999999999996432        4579999


Q ss_pred             EEECCCC-CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          332 IYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       332 v~d~~~~-~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      |||++.+ .+|++||++.++|..+........|++|..     ......|+|++++...
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-----~~k~~Gg~l~v~ir~r  137 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-----GRKATGGKLEVKVRLR  137 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-----CCCCcCCEEEEEEEec
Confidence            9999986 579999999999999987767778999863     2446789999999875

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.70  E-value=2.6e-16  Score=135.79  Aligned_cols=95  Identities=27%  Similarity=0.374  Sum_probs=79.6

Q ss_pred             ccEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEE-Ee--cCCCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFV-VE--DGLHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~-g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~-v~--~~~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+.. |.+||||++++.. +.++.||++++++.||.|||+|.|. +.  +.....|.++|||++
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d   94 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD   94 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence            47899999999999998875 8899999999853 2456799999999999999999994 43  223457999999999


Q ss_pred             CCCC-ceeEEEEEeccccccc
Q 008910          522 TFGK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~  541 (549)
                      .+++ ++||++.+++.++--.
T Consensus        95 ~~~~d~~lG~~~i~L~~l~~~  115 (128)
T cd08388          95 RYSRDDVIGEVVCPLAGADLL  115 (128)
T ss_pred             CCCCCceeEEEEEeccccCCC
Confidence            8876 6999999999998544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.70  E-value=3.1e-17  Score=142.41  Aligned_cols=110  Identities=22%  Similarity=0.300  Sum_probs=92.9

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI  332 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v  332 (549)
                      +.+..+.|.|+|++|+||+..+..|.+||||++++.+.+.+  ++||+++++++||+|||+|.|.+..  .....|.|.|
T Consensus        10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V   89 (136)
T cd08406          10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV   89 (136)
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence            44567899999999999999998899999999999865443  5689999999999999999999864  3456899999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      ||+|..+++++||++.++..  ..+...++|..+..
T Consensus        90 ~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~  123 (136)
T cd08406          90 AESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLA  123 (136)
T ss_pred             EeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHH
Confidence            99999999999999999765  34566678877754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=1.7e-16  Score=133.38  Aligned_cols=100  Identities=22%  Similarity=0.372  Sum_probs=84.9

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  341 (549)
                      |.|.|+|++|++|+.++   ..||||++.++   +++.+|++.++ .||.|||+|.|.+.+.. ..|.|+|||++.. .|
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~D   72 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-WD   72 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-CC
Confidence            68999999999997654   45899999997   67788988877 59999999999997754 4599999999965 89


Q ss_pred             ceeEEEEEECcccCCCcee--EEEEEccccc
Q 008910          342 ELIGCAQVRLCELEPGKVK--DVWLKLVKDL  370 (549)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~--~~w~~L~~~~  370 (549)
                      ++||++.++|.++..+...  ..|++|.+..
T Consensus        73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~  103 (127)
T cd08394          73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV  103 (127)
T ss_pred             CceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence            9999999999998755444  8999998644

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.70  E-value=1.8e-16  Score=132.31  Aligned_cols=95  Identities=22%  Similarity=0.330  Sum_probs=81.3

Q ss_pred             cEEEEEEEEeecCCCCCCC----CCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECCC
Q 008910          448 GVLSVTVILAENLPASDLM----GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT  522 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~----g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~~  522 (549)
                      |+|.|+|++|++|+..+..    +.+||||++++++  +++||++++++.||+|||.|.|.+.+. ....|.|+|||++.
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~--~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~   78 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR--RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK   78 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC--EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC
Confidence            6899999999999987632    3589999999975  678999999999999999999998754 33479999999998


Q ss_pred             CCC-ceeEEEEEecccccccccc
Q 008910          523 FGK-RYLSRYFQNRKTWLHDGSE  544 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~  544 (549)
                      .++ ++||++.+++++++....+
T Consensus        79 ~~~dd~IG~~~l~L~~l~~~~~~  101 (108)
T cd04039          79 FSFNDYVATGSLSVQELLNAAPQ  101 (108)
T ss_pred             CCCCcceEEEEEEHHHHHhhCCC
Confidence            876 6999999999999776543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.69  E-value=1e-16  Score=138.47  Aligned_cols=98  Identities=23%  Similarity=0.409  Sum_probs=83.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEec-----CCCCeEEEEEEECCCCC
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-----GLHDMLIAEVWDHDTFG  524 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-----~~~~~l~i~V~d~~~~~  524 (549)
                      ++|+|++|+||+..+..|.+||||++++++  .++||++++++.||+|||.|.|.+.+     +....|.++|||++.++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~--~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~   78 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK--EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG   78 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECC--eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence            479999999999999889999999999986  67899999999999999999999976     35668999999999887


Q ss_pred             C-ceeEEEEEecccccc-ccccceecC
Q 008910          525 K-RYLSRYFQNRKTWLH-DGSEALRLF  549 (549)
Q Consensus       525 ~-d~lG~~~i~l~~l~~-~~~~~~~~~  549 (549)
                      + ++||++.++++++.. .+....+||
T Consensus        79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~  105 (126)
T cd08682          79 LDKFLGQVSIPLNDLDEDKGRRRTRWF  105 (126)
T ss_pred             CCceeEEEEEEHHHhhccCCCcccEEE
Confidence            5 699999999999873 333444443

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.69  E-value=1.9e-16  Score=135.20  Aligned_cols=93  Identities=17%  Similarity=0.285  Sum_probs=77.1

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCceeeecccccCCC-CCccccEEEEEEecCC-CCeEEEEEEEC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCL-NPIWNQTFDFVVEDGL-HDMLIAEVWDH  520 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~-~~~l~i~V~d~  520 (549)
                      ..+.|+|.|++|+||++....+.+||||++++-   ++..++||+++++|. ||+|||+|.|.+.... +..+.|+|||+
T Consensus        12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~   91 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR   91 (135)
T ss_pred             cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence            348899999999999987656677999999983   334588999999995 6999999999997542 23788999999


Q ss_pred             CCCCC-ceeEEEEEecccc
Q 008910          521 DTFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l  538 (549)
                      +..++ ++||++.++.+..
T Consensus        92 ~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          92 SSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             CCCcCCceEEEEEECCccC
Confidence            98766 7999999999763

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.69  E-value=3.3e-16  Score=134.92  Aligned_cols=102  Identities=30%  Similarity=0.422  Sum_probs=85.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~  523 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++.. ...+++|++++++.||.|||.|.|.+...  ....|.|+|||++.+
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~   94 (124)
T cd08385          15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF   94 (124)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence            478999999999999999888999999999853 23577999999999999999999998642  345899999999988


Q ss_pred             CC-ceeEEEEEeccccccccccceecC
Q 008910          524 GK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      ++ ++||++.++++++.. +.....||
T Consensus        95 ~~~~~lG~~~i~l~~~~~-~~~~~~W~  120 (124)
T cd08385          95 SKHDLIGEVRVPLLTVDL-GHVTEEWR  120 (124)
T ss_pred             CCCceeEEEEEecCcccC-CCCcceEE
Confidence            76 699999999999844 55555554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.69  E-value=1.8e-16  Score=138.40  Aligned_cols=106  Identities=22%  Similarity=0.373  Sum_probs=92.9

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEee-CCCCeEEeeeeCCCCCCeeccEEEEEEecC---------------CCCE
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQH  327 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---------------~~~~  327 (549)
                      |+|+|++|++|+.+ ..+.+||||++++.. ...+.++|+++.++.||.|||+|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 778999999999973 225678999999999999999999998765               4568


Q ss_pred             EEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccccc
Q 008910          328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL  370 (549)
Q Consensus       328 L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~  370 (549)
                      |.|+|||++..+++++||++.+++.++........|+.|.+..
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            9999999998888999999999999988777789999997654

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.69  E-value=7.4e-17  Score=139.94  Aligned_cols=110  Identities=21%  Similarity=0.380  Sum_probs=92.1

Q ss_pred             ccCceeEEEEEEEEcccccccCC--CCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVV  330 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i  330 (549)
                      |.+..|.|.|+|++|+||..+|.  .+.+||||++++.+++.  .++||++++++.||+|||+|.|.+...  ....|.|
T Consensus        10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~   89 (138)
T cd08407          10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL   89 (138)
T ss_pred             EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence            44667999999999999999883  35589999999986543  367899999999999999999998643  3567999


Q ss_pred             EEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       331 ~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      +|||+|.++++++||++.+++..  .|...++|..+..
T Consensus        90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~  125 (138)
T cd08407          90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD  125 (138)
T ss_pred             EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence            99999999999999999999974  5666778877653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.69  E-value=1.1e-15  Score=132.56  Aligned_cols=118  Identities=19%  Similarity=0.371  Sum_probs=96.3

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCC----------CCeEEeeeeCCCCCCee-ccEEEEEEecCCCCEEEEE
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----------EKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR  331 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----------~~~~kT~~~~~t~nP~w-~e~f~f~v~~~~~~~L~i~  331 (549)
                      +..|++++|++|+ ++..|++||||++++.+.+          .+.++|+++++++||+| ||+|.|.+.  ..+.|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence            3578999999998 7778999999999997543          34799999999999999 999999985  35689999


Q ss_pred             EEECCCCCC---CceeEEEEEECcccCCC---ceeEEEEEccccccccCCCceeeEEEEEE
Q 008910          332 IYDDEGIQS---SELIGCAQVRLCELEPG---KVKDVWLKLVKDLDVQRDTKYRGQVHLEL  386 (549)
Q Consensus       332 v~d~~~~~~---d~~lG~~~v~l~~l~~~---~~~~~w~~L~~~~~~~~~~~~~G~l~l~l  386 (549)
                      |||++..++   +++||++.+++.++..+   .....|+.|.+..   ..+..+|+|.+.+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEEe
Confidence            999875433   79999999999998654   3367899987653   2556789998865

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.69  E-value=2.4e-16  Score=134.63  Aligned_cols=93  Identities=26%  Similarity=0.423  Sum_probs=82.3

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec-CCCCEEEEEEEECCC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYDDEG  337 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~-~~~~~L~i~v~d~~~  337 (549)
                      +..|.|+|+|++|++|+ .+..+.+||||+++++   +++++|++++++.||+|||+|.|.... ...+.|.|+|||++.
T Consensus        25 ~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~  100 (127)
T cd04032          25 RGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN  100 (127)
T ss_pred             CCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence            57899999999999998 4667889999999987   558999999999999999999997543 356799999999999


Q ss_pred             CCCCceeEEEEEECcccC
Q 008910          338 IQSSELIGCAQVRLCELE  355 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~  355 (549)
                      .++|++||++.+++....
T Consensus       101 ~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032         101 GWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCCeeEEEEEEecCCc
Confidence            989999999999998654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.68  E-value=2.4e-16  Score=131.36  Aligned_cols=90  Identities=31%  Similarity=0.431  Sum_probs=82.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCcee
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYL  528 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~l  528 (549)
                      .|.|+|++|++|+..+..+.+||||++++++  ++++|+++.++.||+|||.|.|.+.++..+.|.|+|||++.  +++|
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~i   76 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSL   76 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCcc
Confidence            3789999999999998889999999999987  78899999999999999999999998777789999999887  6799


Q ss_pred             EEEEEecccccccc
Q 008910          529 SRYFQNRKTWLHDG  542 (549)
Q Consensus       529 G~~~i~l~~l~~~~  542 (549)
                      |++.+++.++....
T Consensus        77 G~~~i~l~~l~~~~   90 (105)
T cd04050          77 GSLTLPLSELLKEP   90 (105)
T ss_pred             EEEEEEHHHhhccc
Confidence            99999999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.68  E-value=6e-16  Score=138.89  Aligned_cols=97  Identities=31%  Similarity=0.392  Sum_probs=82.5

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEec---CCCCeEEEEEE
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVW  518 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~l~i~V~  518 (549)
                      ...|.|.|+|++|+||+..+..|.+||||++++..   +..++||++++++.||.|||.|.|.+..   ..+..|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            35689999999999999999889999999999842   2357899999999999999999998532   23457999999


Q ss_pred             ECCCCCC-ceeEEEEEeccccccc
Q 008910          519 DHDTFGK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       519 d~~~~~~-d~lG~~~i~l~~l~~~  541 (549)
                      |++.+++ ++||++.+++.++...
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~  127 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSY  127 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccC
Confidence            9998875 7999999999998544

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.68  E-value=2.8e-16  Score=132.84  Aligned_cols=94  Identities=21%  Similarity=0.263  Sum_probs=79.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEe-----CCceeeecccccCCCCCccccEEEEEEec---CCCCeEEEEEEEC
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMK-----KSETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH  520 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~-----~~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~l~i~V~d~  520 (549)
                      .|+|+|++|+||+..+ .|.+||||++++-     .+.++++|+++.+|+||+|||+|+|.+.+   +....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999999887 4899999999983     22346789999999999999999999974   2335799999999


Q ss_pred             CCCCC-ceeEEEEEeccccccccc
Q 008910          521 DTFGK-RYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~  543 (549)
                      +..++ ++||++.+++.++...+.
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~  103 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGS  103 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCc
Confidence            87765 699999999999976664

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>PLN03008 Phospholipase D delta

Probab=99.68  E-value=3.8e-16  Score=166.47  Aligned_cols=128  Identities=23%  Similarity=0.522  Sum_probs=109.7

Q ss_pred             eeEEEEEEEEcccccccCC------------------------------------------CCCCCcEEEEEEeeCCCCe
Q 008910          261 VGTLEVKLVQAKGLTNKDL------------------------------------------IGKSDPYAVLFVRPLPEKT  298 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~~  298 (549)
                      .|.|.++|.+|++|+++|.                                          .+++||||++.++  +.++
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~rv   90 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QATL   90 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Ccce
Confidence            5899999999999886332                                          2467999999996  2446


Q ss_pred             EEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCce
Q 008910          299 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY  378 (549)
Q Consensus       299 ~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~  378 (549)
                      .||++++++.||+|||+|.|.+.++. ..|.|.|||+|.++ +++||++.+|++++..+...+.|++|.+...  +..+.
T Consensus        91 ~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--kp~k~  166 (868)
T PLN03008         91 ARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG--KPPKA  166 (868)
T ss_pred             eeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC--CCCCC
Confidence            79999999999999999999998864 48999999999986 5899999999999999999999999987653  34566


Q ss_pred             eeEEEEEEEEeecccC
Q 008910          379 RGQVHLELLYCPFGME  394 (549)
Q Consensus       379 ~G~l~l~l~~~p~~~~  394 (549)
                      .|+|++++.|.|++..
T Consensus       167 ~~kl~v~lqf~pv~~~  182 (868)
T PLN03008        167 ETAIFIDMKFTPFDQI  182 (868)
T ss_pred             CcEEEEEEEEEEcccc
Confidence            7999999999998765

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.68  E-value=6.1e-16  Score=133.50  Aligned_cols=94  Identities=31%  Similarity=0.483  Sum_probs=80.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC---CCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|+||+..+..+.+||||++++..   ...+++|++++++.||+|||+|.|.+...   ....|.|+|||+
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~   94 (125)
T cd04031          15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY   94 (125)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence            478999999999999998888999999999854   23577999999999999999999986432   356899999999


Q ss_pred             CCCCC-ceeEEEEEecccccc
Q 008910          521 DTFGK-RYLSRYFQNRKTWLH  540 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~  540 (549)
                      +..++ ++||++.+++++...
T Consensus        95 ~~~~~~~~iG~~~i~l~~~~~  115 (125)
T cd04031          95 DRDGENDFLGEVVIDLADALL  115 (125)
T ss_pred             CCCCCCcEeeEEEEecccccc
Confidence            98776 699999999999433

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.68  E-value=3.3e-16  Score=133.53  Aligned_cols=103  Identities=25%  Similarity=0.425  Sum_probs=91.2

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  341 (549)
                      |.|+|+|++|++|++.+..+.+||||++.++  +...++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d   77 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD   77 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence            7899999999999999988999999999986  23568899999999999999999988765 46899999999999899


Q ss_pred             ceeEEEEEECcccCCCceeEEEEEccc
Q 008910          342 ELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      ++||++.+++.++..+ ..+.||.+..
T Consensus        78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~  103 (120)
T cd04045          78 RSLGSVEINVSDLIKK-NEDGKYVEYD  103 (120)
T ss_pred             CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence            9999999999999876 5578888764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.67  E-value=3.2e-16  Score=133.81  Aligned_cols=92  Identities=26%  Similarity=0.421  Sum_probs=81.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeeccccc-CCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCc
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKR  526 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d  526 (549)
                      |.|.|+|++|++|+..+..+.+||||++++++  .+++|+++. ++.||+|||.|.|.+..+....|.|+|||++..+++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~   78 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG--VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPD   78 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC--CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCc
Confidence            67999999999999999889999999999987  667888875 478999999999999876667899999999887767


Q ss_pred             eeEEEEEeccccccc
Q 008910          527 YLSRYFQNRKTWLHD  541 (549)
Q Consensus       527 ~lG~~~i~l~~l~~~  541 (549)
                      +||++.+++.+++..
T Consensus        79 ~iG~~~~~l~~~~~~   93 (118)
T cd08681          79 LIGDTEVDLSPALKE   93 (118)
T ss_pred             ceEEEEEecHHHhhc
Confidence            999999999998664

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.67  E-value=4e-16  Score=136.85  Aligned_cols=92  Identities=29%  Similarity=0.595  Sum_probs=84.9

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  340 (549)
                      .|.|+|+|++|++|+..+. +.+||||+++++   .+.++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~   75 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK   75 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence            3899999999999999887 899999999997   6789999999999999999999999877 6689999999999999


Q ss_pred             CceeEEEEEECcccCCC
Q 008910          341 SELIGCAQVRLCELEPG  357 (549)
Q Consensus       341 d~~lG~~~v~l~~l~~~  357 (549)
                      |++||.+.+++.++...
T Consensus        76 dd~iG~a~i~l~~l~~~   92 (145)
T cd04038          76 DDSMGEAEIDLEPLVEA   92 (145)
T ss_pred             CCEEEEEEEEHHHhhhh
Confidence            99999999999998654

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.67  E-value=3.6e-16  Score=137.67  Aligned_cols=103  Identities=20%  Similarity=0.287  Sum_probs=86.8

Q ss_pred             EEEEEEEEcccccccCCCC--------------CCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC-CCCE
Q 008910          263 TLEVKLVQAKGLTNKDLIG--------------KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQH  327 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~-~~~~  327 (549)
                      .|.|+|++|++|+.+|..+              .+||||++.++   +++.+|++++++.||+|||+|.|.+..+ ..+.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~   77 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER   77 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence            3789999999999988543              68999999997   5678999999999999999999997654 3568


Q ss_pred             EEEEEEECCCCCCCceeEEEEEECcccCCCce-------eEEEEEccc
Q 008910          328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKV-------KDVWLKLVK  368 (549)
Q Consensus       328 L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~-------~~~w~~L~~  368 (549)
                      |.|+|||+|..++|++||.+.+++.++.....       ...|+.+..
T Consensus        78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg  125 (151)
T cd04018          78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG  125 (151)
T ss_pred             EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence            99999999998899999999999999865432       246777643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.67  E-value=3.4e-16  Score=131.83  Aligned_cols=96  Identities=33%  Similarity=0.579  Sum_probs=83.3

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC---CCCeEEEEEEECCC
Q 008910          448 GVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDT  522 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~-g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~l~i~V~d~~~  522 (549)
                      |+|.|+|++|++|+..+.. +.+||||++++.. ....++|+++++|.||+|||.|.|.+...   ....|.++|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999887 8999999999853 23568999999999999999999988644   34689999999998


Q ss_pred             CCC-ceeEEEEEeccccccccc
Q 008910          523 FGK-RYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~  543 (549)
                      .++ ++||++.+++.++.++++
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~  102 (111)
T cd04041          81 FTADDRLGRVEIDLKELIEDRN  102 (111)
T ss_pred             CCCCCcceEEEEEHHHHhcCCC
Confidence            875 799999999999986553

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.8e-17  Score=156.04  Aligned_cols=227  Identities=27%  Similarity=0.362  Sum_probs=170.7

Q ss_pred             cccccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEE--EEecC-CCCEE
Q 008910          254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEF--IVEDE-STQHL  328 (549)
Q Consensus       254 ~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f--~v~~~-~~~~L  328 (549)
                      ..+|......+..++..|++|..++..+..|||++..+++.-.  .+.+|++..+++||.|+|+-.+  ...+. ....+
T Consensus        85 ~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~  164 (362)
T KOG1013|consen   85 ELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVL  164 (362)
T ss_pred             hhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhh
Confidence            3445556678899999999999999999999999999986433  3477889999999999986443  33333 23467


Q ss_pred             EEEEEECCCCCCCceeEEEEEECcccCCCceeE--EEEEccccc-ccc-CCCceeeEEEEEEEEeecccCCcccCCCCCC
Q 008910          329 VVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD--VWLKLVKDL-DVQ-RDTKYRGQVHLELLYCPFGMENVFTNPFAPN  404 (549)
Q Consensus       329 ~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~--~w~~L~~~~-~~~-~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~  404 (549)
                      ++.|.|.+.+..++++|+..+++..+.+.+...  .|+.-.-.. ... .+...+|++.+++.|-               
T Consensus       165 Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~---------------  229 (362)
T KOG1013|consen  165 RKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS---------------  229 (362)
T ss_pred             heeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC---------------
Confidence            899999999999999999999998887654422  232211110 001 1225567777777663               


Q ss_pred             CCcchHHHHhhcccccccCCCCCchhhhhhhhhhhhccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---Cc
Q 008910          405 FSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SE  481 (549)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~  481 (549)
                                                              ....-+.|++.+|..|..+|.+|.+||||..++..   ..
T Consensus       230 ----------------------------------------s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~  269 (362)
T KOG1013|consen  230 ----------------------------------------STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKK  269 (362)
T ss_pred             ----------------------------------------cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchh
Confidence                                                    12355889999999999999999999999999853   23


Q ss_pred             eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCCC-CceeEEEEEec
Q 008910          482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG-KRYLSRYFQNR  535 (549)
Q Consensus       482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~-~d~lG~~~i~l  535 (549)
                      .++||.+.++|.+|+||+.|.|.+...  ....+.|.|||++..+ .|++|-+....
T Consensus       270 fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  270 FKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG  326 (362)
T ss_pred             hcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence            478999999999999999999998743  5568999999999864 37888766544

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.67  E-value=1.4e-16  Score=138.96  Aligned_cols=110  Identities=25%  Similarity=0.427  Sum_probs=93.3

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  332 (549)
                      +....|.|.|+|++|++|+.++..|.+||||++++.+..  ...++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus         8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V   87 (133)
T cd08384           8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV   87 (133)
T ss_pred             EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence            334579999999999999999988999999999997532  3468999999999999999999998643  346899999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      ||++..+++++||++.+++..  .+...++|+.+.+
T Consensus        88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~  121 (133)
T cd08384          88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK  121 (133)
T ss_pred             EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence            999988889999999999975  4455678988764

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.67  E-value=1e-15  Score=132.46  Aligned_cols=102  Identities=30%  Similarity=0.402  Sum_probs=84.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..+.+||||++++...   ..++||++++++.||.|||+|.|.+...  ....|.|.|||++
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~   94 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK   94 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence            3789999999999999998889999999998532   3578999999999999999999998632  3468999999998


Q ss_pred             CC--CC-ceeEEEEEeccccccccccceecC
Q 008910          522 TF--GK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       522 ~~--~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      ..  ++ ++||++.+++.++... .....||
T Consensus        95 ~~~~~~~~~iG~~~i~l~~l~~~-~~~~~W~  124 (127)
T cd04030          95 SFLSREKKLLGQVLIDLSDLDLS-KGFTQWY  124 (127)
T ss_pred             cccCCCCceEEEEEEeccccccc-CCccceE
Confidence            75  34 6999999999998544 3444454

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.67  E-value=5.6e-16  Score=135.00  Aligned_cols=93  Identities=34%  Similarity=0.546  Sum_probs=85.7

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  525 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~  525 (549)
                      ..|.|.|+|++|++|+..+..|.+||||+++++.  .+++|++++++.||.|||.|.|.+.++..+.|.|+|||++.+++
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            4599999999999999999889999999999976  67899999999999999999999987777789999999998875


Q ss_pred             -ceeEEEEEecccccc
Q 008910          526 -RYLSRYFQNRKTWLH  540 (549)
Q Consensus       526 -d~lG~~~i~l~~l~~  540 (549)
                       ++||++.+++.++..
T Consensus        91 d~~lG~~~i~l~~l~~  106 (136)
T cd08375          91 DDFLGRTEIRVADILK  106 (136)
T ss_pred             CCeeEEEEEEHHHhcc
Confidence             699999999999986

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.66  E-value=9.4e-16  Score=131.95  Aligned_cols=102  Identities=25%  Similarity=0.489  Sum_probs=84.8

Q ss_pred             ccEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|+||+..+ ..+.+||||++++...   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   92 (123)
T cd08521          13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH   92 (123)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence            478999999999999988 6788999999998432   2468999999999999999999998643  345899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccccccceecC
Q 008910          521 DTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +..++ ++||++.+++.++. .+.....||
T Consensus        93 ~~~~~~~~iG~~~i~l~~l~-~~~~~~~w~  121 (123)
T cd08521          93 DRFGRNTFLGEVEIPLDSWD-LDSQQSEWY  121 (123)
T ss_pred             CCCcCCceeeEEEEeccccc-ccCCCccEE
Confidence            98876 69999999999994 444556665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.66  E-value=7.4e-16  Score=129.87  Aligned_cols=99  Identities=22%  Similarity=0.375  Sum_probs=85.9

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC----CCEEEEEEEECCC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG  337 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~  337 (549)
                      -.|+|+|++|++|.    .|.+||||+++++   +++++|++++++.||.|||+|.|.+..+.    ...|.|+|||++.
T Consensus         4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~   76 (111)
T cd04011           4 FQVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS   76 (111)
T ss_pred             EEEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence            36899999999998    4789999999998   56789999999999999999999986542    4589999999999


Q ss_pred             CCCCceeEEEEEECcccCCC---ceeEEEEEcc
Q 008910          338 IQSSELIGCAQVRLCELEPG---KVKDVWLKLV  367 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~---~~~~~w~~L~  367 (549)
                      .++|++||++.++++++..+   .....|++|.
T Consensus        77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~  109 (111)
T cd04011          77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT  109 (111)
T ss_pred             cccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence            88899999999999998655   3457899884

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.66  E-value=1.8e-15  Score=131.85  Aligned_cols=95  Identities=25%  Similarity=0.350  Sum_probs=82.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-----ceeeecccccCCCCCccccEEEEEEecC----CCCeEEEEE
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEV  517 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~l~i~V  517 (549)
                      .+.|.|+|++|++|+..+..|.+||||++++...     ..++||+++++|.||+|||.|.|.+...    ....|.|+|
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V   94 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV   94 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence            3679999999999999988899999999998632     3578999999999999999999998642    345899999


Q ss_pred             EECCCCCC-ceeEEEEEeccccccc
Q 008910          518 WDHDTFGK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       518 ~d~~~~~~-d~lG~~~i~l~~l~~~  541 (549)
                      ||++..++ ++||++.++++++..-
T Consensus        95 ~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          95 KDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             EecCCCCCCcEeEEEEEeHHHCCcc
Confidence            99998875 6999999999999743

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.65  E-value=5.8e-16  Score=133.91  Aligned_cols=99  Identities=25%  Similarity=0.425  Sum_probs=84.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCC---CCeEEEEEEECCCCC-
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL---HDMLIAEVWDHDTFG-  524 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~---~~~l~i~V~d~~~~~-  524 (549)
                      .|.|+|++|++|+..+..|.+||||++++++  ++++|+++.++.||.|||.|.|.+.++.   ...|.|+|||++..+ 
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~   78 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG--QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR   78 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence            3889999999999998889999999999986  6789999999999999999999997542   357999999998875 


Q ss_pred             -CceeEEEEEeccccccccccceecC
Q 008910          525 -KRYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       525 -~d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                       +++||++.++++++...+.....||
T Consensus        79 ~d~~lG~v~i~l~~l~~~~~~~~~w~  104 (127)
T cd04022          79 RRSFLGRVRISGTSFVPPSEAVVQRY  104 (127)
T ss_pred             CCCeeeEEEEcHHHcCCCCCccceEe
Confidence             4799999999999985555555554

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.65  E-value=3.6e-16  Score=136.91  Aligned_cols=108  Identities=23%  Similarity=0.377  Sum_probs=91.5

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  334 (549)
                      ...+.|.|+|++|++|+..|..|.+||||++++.+.+.  .+++|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d   91 (136)
T cd08404          12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence            45689999999999999999889999999999974332  357899999999999999999998642  34578999999


Q ss_pred             CCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      ++..+++++||++.+++..  .+....+|+.+..
T Consensus        92 ~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~  123 (136)
T cd08404          92 SDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN  123 (136)
T ss_pred             CCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence            9999999999999999987  4556778888753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.65  E-value=5.8e-16  Score=132.21  Aligned_cols=112  Identities=10%  Similarity=0.211  Sum_probs=90.4

Q ss_pred             ccccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCC-CCeeccEEEEEEecCC-CCEEEE
Q 008910          255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDL-NPIWNEHFEFIVEDES-TQHLVV  330 (549)
Q Consensus       255 ~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~-nP~w~e~f~f~v~~~~-~~~L~i  330 (549)
                      .+|.+..|.|+|+|++|+||+++...+.+||||++++...+++  ++||+++++|+ ||+|||+|.|.+.... ...|.+
T Consensus         7 L~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v   86 (135)
T cd08692           7 TCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI   86 (135)
T ss_pred             eeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence            3456778999999999999998765667799999999854443  68899999996 6999999999997542 336889


Q ss_pred             EEEECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       331 ~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      +|||++..+++++||++.++.++. .+...++|..+.
T Consensus        87 ~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~  122 (135)
T cd08692          87 KLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI  122 (135)
T ss_pred             EEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence            999999988999999999999763 333457887764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.65  E-value=1e-15  Score=128.92  Aligned_cols=101  Identities=25%  Similarity=0.482  Sum_probs=86.5

Q ss_pred             CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCC-C
Q 008910          279 LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-G  357 (549)
Q Consensus       279 ~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~-~  357 (549)
                      ..|.+||||+++++  +...++|++++++.||.|||.|.|.+.+...+.|.|+|||++.. +|++||++.++|.++.. +
T Consensus         9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~   85 (111)
T cd04052           9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT   85 (111)
T ss_pred             cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence            46889999999996  22467999999999999999999999877667899999999988 89999999999999854 3


Q ss_pred             ceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910          358 KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       358 ~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      ...+.|++|..        ...|+|++++.|.|
T Consensus        86 ~~~~~w~~L~~--------~~~G~i~~~~~~~p  110 (111)
T cd04052          86 SVGQQWFPLSG--------NGQGRIRISALWKP  110 (111)
T ss_pred             hccceeEECCC--------CCCCEEEEEEEEec
Confidence            45689999952        45799999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.65  E-value=1.9e-15  Score=129.82  Aligned_cols=100  Identities=27%  Similarity=0.310  Sum_probs=82.1

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEe-CCceeeecccccCCCCCccccEEEEE-Eec--CCCCeEEEEEEECCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFV-VED--GLHDMLIAEVWDHDT  522 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~-~~~~~~kT~~~~~t~nP~wne~f~f~-v~~--~~~~~l~i~V~d~~~  522 (549)
                      .+.|.|+|++|+||+..+..|.+||||++.+. .+.+++||+++++ .||+|||+|.|. +..  ..+..|.++|||++.
T Consensus        15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~   93 (124)
T cd08389          15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER   93 (124)
T ss_pred             CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence            36799999999999999988889999998873 3346789998877 999999999998 542  245689999999998


Q ss_pred             CCC-ceeEEEEEeccccccccccceec
Q 008910          523 FGK-RYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      +++ ++||++.|+++++.. +.....|
T Consensus        94 ~~~~~~lG~~~i~L~~l~~-~~~~~~w  119 (124)
T cd08389          94 MRKERLIGEKVVPLSQLNL-EGETTVW  119 (124)
T ss_pred             cccCceEEEEEEeccccCC-CCCceEE
Confidence            876 699999999999944 3444444

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.65  E-value=2.1e-15  Score=131.71  Aligned_cols=111  Identities=19%  Similarity=0.301  Sum_probs=92.3

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVR  331 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~  331 (549)
                      +....+.|.|+|++|+||+.++..|.+||||++++.+..+   .++||++++++.||+|||+|.|.+..  .....|.|.
T Consensus        10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~   89 (138)
T cd08408          10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS   89 (138)
T ss_pred             EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence            4456799999999999999999889999999999986433   25789999999999999999999874  345689999


Q ss_pred             EEECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       332 v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      |||++..+++++||++.+++..... ...++|..+..
T Consensus        90 V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~  125 (138)
T cd08408          90 VYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE  125 (138)
T ss_pred             EEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence            9999999999999999998874322 23467887754

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.64  E-value=8.2e-16  Score=132.10  Aligned_cols=120  Identities=23%  Similarity=0.262  Sum_probs=92.4

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  342 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~  342 (549)
                      +|+|+|++|++|++.|..|.+||||+++++.. ....+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd   79 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD   79 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence            37899999999999999999999999999722 23367888889999999999999987776779999999999988999


Q ss_pred             eeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910          343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       343 ~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      +||++.+++++..-   ..+|.....    .......|.++....+.|
T Consensus        80 ~iG~~~i~l~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~  120 (124)
T cd04037          80 LIGETVIDLEDRFF---SKHRATCGL----PPTYEESGPNQWRDSLKP  120 (124)
T ss_pred             eeEEEEEeeccccc---chHHHhccC----CCcccccCceecCcccCc
Confidence            99999999987543   122222211    122335677766655543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.64  E-value=1.8e-15  Score=132.45  Aligned_cols=91  Identities=31%  Similarity=0.442  Sum_probs=78.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc---eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++....   .++||++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d   93 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence            36799999999999999988999999999985322   367899999999999999999998632  3457899999999


Q ss_pred             CCCC-ceeEEEEEeccc
Q 008910          522 TFGK-RYLSRYFQNRKT  537 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~  537 (549)
                      .+++ ++||++.+++..
T Consensus        94 ~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          94 RVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             CCCCCccEEEEEECCcC
Confidence            8876 699999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.64  E-value=1.6e-15  Score=132.07  Aligned_cols=98  Identities=27%  Similarity=0.380  Sum_probs=85.8

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC----CCeEEeeeeCCCCCCeeccEEEEEEecC----CCCEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV  330 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~w~e~f~f~v~~~----~~~~L~i  330 (549)
                      ...+.|.|+|++|++|+..+..+.+||||++++.+..    ...++|+++++|.||+|||+|.|.+...    ....|.|
T Consensus        13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~   92 (133)
T cd04009          13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF   92 (133)
T ss_pred             CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence            3468899999999999999888999999999997432    3578999999999999999999998653    3458999


Q ss_pred             EEEECCCCCCCceeEEEEEECcccCC
Q 008910          331 RIYDDEGIQSSELIGCAQVRLCELEP  356 (549)
Q Consensus       331 ~v~d~~~~~~d~~lG~~~v~l~~l~~  356 (549)
                      +|||++..+++++||++.++|+++..
T Consensus        93 ~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          93 TVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            99999999889999999999998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.64  E-value=3.6e-16  Score=136.56  Aligned_cols=110  Identities=29%  Similarity=0.475  Sum_probs=91.4

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  332 (549)
                      +....|.|+|+|++|++|++++..|.+||||++++.+.+  ...++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus         9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v   88 (134)
T cd08403           9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV   88 (134)
T ss_pred             EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            345679999999999999999999999999999997433  2467899999999999999999987542  334699999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      ||++..+++++||++.+++.  ..+...++|+.+..
T Consensus        89 ~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~  122 (134)
T cd08403          89 VDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA  122 (134)
T ss_pred             EECCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence            99999999999999999987  34455678877754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.64  E-value=2e-15  Score=128.48  Aligned_cols=92  Identities=30%  Similarity=0.550  Sum_probs=82.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY  527 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  527 (549)
                      +++|+|++|+||+..+..+.+||||++++++  .+++|+++++|.||.|||.|.|.+.++....|.|+|||++..++ ++
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~   78 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEF   78 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECC--EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCe
Confidence            4789999999999999889999999999976  67899999999999999999999987667899999999998865 69


Q ss_pred             eEEEEEecccccccc
Q 008910          528 LSRYFQNRKTWLHDG  542 (549)
Q Consensus       528 lG~~~i~l~~l~~~~  542 (549)
                      ||++.++++++...+
T Consensus        79 iG~~~~~l~~l~~~~   93 (116)
T cd08376          79 IGRCEIDLSALPREQ   93 (116)
T ss_pred             EEEEEEeHHHCCCCC
Confidence            999999999986543

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.64  E-value=4.8e-15  Score=129.06  Aligned_cols=125  Identities=18%  Similarity=0.328  Sum_probs=100.3

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  338 (549)
                      +....|.|.|++|++|+.++     +|||.+.++  +....||+++.++.||.|+|+|.|..... ...+.|.||+.+..
T Consensus         8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~   79 (146)
T cd04013           8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDK   79 (146)
T ss_pred             EEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCc
Confidence            45678999999999998764     799999998  23346999999999999999999976544 45799999876532


Q ss_pred             C----CCceeEEEEEECcccCCCceeEEEEEcccccccc-----CCCceeeEEEEEEEEeec
Q 008910          339 Q----SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-----RDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       339 ~----~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~-----~~~~~~G~l~l~l~~~p~  391 (549)
                      .    ++++||.+.|++.++..+...+.||+|.......     ......+.|++++.|.+.
T Consensus        80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence            2    5789999999999999999999999998654221     012456899999999864

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.64  E-value=3.5e-16  Score=137.02  Aligned_cols=109  Identities=23%  Similarity=0.407  Sum_probs=91.5

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY  333 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~  333 (549)
                      .+..|.|.|+|++|++|+..+..|.+||||++++.+.+  ..+++|++++++.||.|||+|.|.+..  .....|.|+||
T Consensus        11 ~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~   90 (136)
T cd08405          11 NPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVM   90 (136)
T ss_pred             cCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            34569999999999999999988999999999986432  246789999999999999999998753  23458999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      |++..+++++||++.+++.+.  +...++|+++..
T Consensus        91 d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~  123 (136)
T cd08405          91 DKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS  123 (136)
T ss_pred             ECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence            999998999999999999875  455677877754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.64  E-value=3.6e-15  Score=128.64  Aligned_cols=101  Identities=26%  Similarity=0.350  Sum_probs=82.8

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEec---CCCCeEEEEEEECCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDHDT  522 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~l~i~V~d~~~  522 (549)
                      .+.|.|+|++|+||+..+..+.+||||++++.. ...+.+|++++++.||.|||+|.|.+..   .....|.++|||++.
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~   94 (125)
T cd08386          15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR   94 (125)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence            368999999999999998888999999999842 2356899999999999999999997532   234579999999998


Q ss_pred             CCC-ceeEEEEEeccccccccccceec
Q 008910          523 FGK-RYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      .++ ++||++.+++.++.. +.....|
T Consensus        95 ~~~~~~iG~~~i~l~~l~~-~~~~~~W  120 (125)
T cd08386          95 FSRNDPIGEVSLPLNKVDL-TEEQTFW  120 (125)
T ss_pred             CcCCcEeeEEEEecccccC-CCCcceE
Confidence            876 699999999999864 3334444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.63  E-value=5.4e-15  Score=127.20  Aligned_cols=118  Identities=24%  Similarity=0.418  Sum_probs=93.8

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  341 (549)
                      -.|.|+|++|+ |...+..+.+||||+++++  +...++|++++++.||.|||+|.|.+.  ..+.|.|+|||++..+.|
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~   76 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKAD   76 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--CcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCC
Confidence            36899999998 5555557889999999997  223789999999999999999999985  356899999999998899


Q ss_pred             ceeEEEEEECcccCCCc---e--eEEEEEccccccccCCCceeeEEEEEE
Q 008910          342 ELIGCAQVRLCELEPGK---V--KDVWLKLVKDLDVQRDTKYRGQVHLEL  386 (549)
Q Consensus       342 ~~lG~~~v~l~~l~~~~---~--~~~w~~L~~~~~~~~~~~~~G~l~l~l  386 (549)
                      ++||++.+++.++....   .  ...|+++.+..  ....+..|+|++++
T Consensus        77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~~  124 (125)
T cd04021          77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVIL  124 (125)
T ss_pred             cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEEe
Confidence            99999999999986432   2  23588886432  11346789998865

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.63  E-value=5e-16  Score=135.73  Aligned_cols=110  Identities=24%  Similarity=0.397  Sum_probs=93.2

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY  333 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~  333 (549)
                      .+..+.|.|+|++|+||+..+ .+.+||||++.+.+...  .+++|++++++.||+|||+|.|.+..  .....|.|+||
T Consensus        11 ~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~   89 (137)
T cd08409          11 NPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM   89 (137)
T ss_pred             CCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence            345689999999999999988 78899999999986433  36789999999999999999999853  34468999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      |++..+++++||++.++......+...++|..+..
T Consensus        90 ~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          90 QSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             eCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            99998999999999999776666777788887754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.63  E-value=2.8e-15  Score=131.25  Aligned_cols=110  Identities=30%  Similarity=0.449  Sum_probs=91.9

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  332 (549)
                      +.+..|.|.|+|++|++|+.++..|.+||||++++.+.+.  ..++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus        10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v   89 (136)
T cd08402          10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            4456799999999999999999889999999999974322  457899999999999999999998643  234799999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      ||++..++|++||++.+++...  +...++|+++..
T Consensus        90 ~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~  123 (136)
T cd08402          90 LDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA  123 (136)
T ss_pred             EeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence            9999999999999999999753  445677877754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.63  E-value=2.5e-15  Score=131.55  Aligned_cols=92  Identities=28%  Similarity=0.443  Sum_probs=78.9

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++..   ...+++|++++++.||.|||.|.|.+..  .....|.|+|||++
T Consensus        14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~   93 (136)
T cd08405          14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence            378999999999999988889999999999842   2246789999999999999999999763  23457999999999


Q ss_pred             CCCC-ceeEEEEEecccc
Q 008910          522 TFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l  538 (549)
                      ..++ ++||++.+++.+.
T Consensus        94 ~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          94 RLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCcEeEEEEECCccC
Confidence            8876 6999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.63  E-value=2.6e-15  Score=128.32  Aligned_cols=92  Identities=27%  Similarity=0.501  Sum_probs=80.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCcee
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYL  528 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~l  528 (549)
                      |.|+|++|++|+..+..+.+||||++++++ ...+++|++++++.||+|||+|.|.+.......|.|+|||++..++++|
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i   81 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL   81 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence            789999999999998888999999999863 2467899999999999999999999976656689999999998855799


Q ss_pred             EEEEEeccccccc
Q 008910          529 SRYFQNRKTWLHD  541 (549)
Q Consensus       529 G~~~i~l~~l~~~  541 (549)
                      |++.+++.++...
T Consensus        82 G~~~~~l~~l~~g   94 (119)
T cd04036          82 GTVLFDVSKLKLG   94 (119)
T ss_pred             EEEEEEHHHCCCC
Confidence            9999999998643

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.63  E-value=2.7e-15  Score=130.09  Aligned_cols=91  Identities=34%  Similarity=0.594  Sum_probs=82.7

Q ss_pred             cEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC
Q 008910          448 GVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  525 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~  525 (549)
                      |.|.|+|++|+||+..+.  .+.+||||++.++.  .+++|++++++.||.|||.|.|.+.++....|.|+|||++..++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~   78 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAG   78 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCC
Confidence            689999999999999887  88999999999875  67899999999999999999999987667799999999998765


Q ss_pred             -ceeEEEEEecccccc
Q 008910          526 -RYLSRYFQNRKTWLH  540 (549)
Q Consensus       526 -d~lG~~~i~l~~l~~  540 (549)
                       ++||++.+++.++..
T Consensus        79 ~~~lG~~~i~l~~~~~   94 (128)
T cd04024          79 KDYLGEFDIALEEVFA   94 (128)
T ss_pred             CCcceEEEEEHHHhhc
Confidence             799999999999974

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.62  E-value=2.1e-15  Score=126.78  Aligned_cols=98  Identities=32%  Similarity=0.502  Sum_probs=83.4

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCceeeecccccCCCCCcc-ccEEEEEEecC--CCCeEEEEEEECCCCCC
Q 008910          450 LSVTVILAENLPASDL-MGKADPYVVLTMKKSETRNKTRVVNDCLNPIW-NQTFDFVVEDG--LHDMLIAEVWDHDTFGK  525 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~--~~~~l~i~V~d~~~~~~  525 (549)
                      |.|+|++|+||+.++. .|.+||||++++++  .++||++++++.||.| ||.|.|.+...  ....|.|+|||++..++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~   78 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSA   78 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC--eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCC
Confidence            5799999999998874 68899999999986  8889999999999999 99999999754  34689999999998876


Q ss_pred             -ceeEEEEEeccccccc--cccceecC
Q 008910          526 -RYLSRYFQNRKTWLHD--GSEALRLF  549 (549)
Q Consensus       526 -d~lG~~~i~l~~l~~~--~~~~~~~~  549 (549)
                       ++||++.+++.++...  +...-.||
T Consensus        79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~  105 (110)
T cd08688          79 NDAIGKVYIDLNPLLLKDSVSQISGWF  105 (110)
T ss_pred             CCceEEEEEeHHHhcccCCccccCCeE
Confidence             6999999999999874  33344443

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.62  E-value=2.8e-15  Score=132.58  Aligned_cols=90  Identities=29%  Similarity=0.286  Sum_probs=80.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccC-CCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R  526 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d  526 (549)
                      .|.|+|++|+||+..+..|.+||||++++++  ++++|+++.+ +.||+|||.|+|.+.++..+.+.|+|||++..++ +
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd   78 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDE   78 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCC
Confidence            3789999999999999999999999999987  7788888876 6999999999999987666789999999998754 6


Q ss_pred             eeEEEEEecccccc
Q 008910          527 YLSRYFQNRKTWLH  540 (549)
Q Consensus       527 ~lG~~~i~l~~l~~  540 (549)
                      +||++.++++++..
T Consensus        79 ~lG~v~i~L~~l~~   92 (150)
T cd04019          79 PLGRAVIPLNDIER   92 (150)
T ss_pred             eEEEEEEEHHHCcc
Confidence            99999999999864

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.62  E-value=4.5e-15  Score=128.01  Aligned_cols=95  Identities=22%  Similarity=0.307  Sum_probs=83.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCce
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRY  527 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~  527 (549)
                      ++|+|+|++|++|+..+..|.+||||++.+++  .+++|++++++.||.|||.|.|.+.+. ...|.|+|||++..++++
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~   79 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG--ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEF   79 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC--EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCc
Confidence            68999999999999998889999999999886  678999999999999999999988754 568999999999887789


Q ss_pred             eEEEEEeccccccccccc
Q 008910          528 LSRYFQNRKTWLHDGSEA  545 (549)
Q Consensus       528 lG~~~i~l~~l~~~~~~~  545 (549)
                      ||.+.++++++.....+.
T Consensus        80 lG~~~~~l~~~~~~~~~~   97 (126)
T cd04046          80 LGQATLSADPNDSQTLRT   97 (126)
T ss_pred             eEEEEEecccCCCcCceE
Confidence            999999998865444433

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.62  E-value=3.8e-15  Score=127.45  Aligned_cols=100  Identities=26%  Similarity=0.436  Sum_probs=86.7

Q ss_pred             EEEcccccccCCCCCCCcEEEEEEeeCC----CCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC----CC
Q 008910          268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQ  339 (549)
Q Consensus       268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~----~~  339 (549)
                      .++|++|++.+..|.+||||++++.+..    ...++|++++++.||+|||+|.|.+.....+.|.|+|||++.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            4789999999988999999999998432    125899999999999999999998765556689999999997    78


Q ss_pred             CCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          340 SSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       340 ~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      ++++||++.+++.++..+.....|+.|.
T Consensus        86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          86 DHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence            9999999999999998877778888883

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.62  E-value=4.9e-15  Score=129.32  Aligned_cols=91  Identities=23%  Similarity=0.449  Sum_probs=76.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++...   ..+++|+++++|.||.|||+|.|.+...  ....|.|+|||++
T Consensus        13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d   92 (135)
T cd08410          13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN   92 (135)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            3789999999999999998899999999998432   2467899999999999999999998532  3347999999999


Q ss_pred             CCCC-ceeEEEEEeccc
Q 008910          522 TFGK-RYLSRYFQNRKT  537 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~  537 (549)
                      ..++ ++||++.|+...
T Consensus        93 ~~~~~~~iG~~~l~~~~  109 (135)
T cd08410          93 VKSSNDFIGRIVIGQYS  109 (135)
T ss_pred             CCCCCcEEEEEEEcCcc
Confidence            8776 699999877543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.62  E-value=3.5e-15  Score=127.51  Aligned_cols=94  Identities=30%  Similarity=0.365  Sum_probs=81.3

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEec-CCCCeEEEEEEECCCCC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFG  524 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~~~~l~i~V~d~~~~~  524 (549)
                      ..|.|.|+|++|++|+. +..+.+||||++++++  +++||++++++.||+|||+|.|.... .....|.|+|||++..+
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~--~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s  102 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG--QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW  102 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC--ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence            45899999999999984 5678899999999986  58899999999999999999997533 34668999999999986


Q ss_pred             C-ceeEEEEEecccccccc
Q 008910          525 K-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~~  542 (549)
                      + ++||++.++++....+.
T Consensus       103 ~dd~IG~~~i~l~~~~~~~  121 (127)
T cd04032         103 DDDLLGTCSVVPEAGVHED  121 (127)
T ss_pred             CCCeeEEEEEEecCCceee
Confidence            5 69999999999887653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.62  E-value=3.9e-15  Score=125.24  Aligned_cols=88  Identities=24%  Similarity=0.323  Sum_probs=76.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCce
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRY  527 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~  527 (549)
                      +.|.|.|++|++|+..+   ..||||++.+++  ++.+|++.++ .||.|||.|.|.+.+.. ..|.|+|||++..++|+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~--~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~   74 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN--VKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTL   74 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECC--EEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCc
Confidence            67999999999997644   458999999987  7889998877 59999999999998644 45999999999887789


Q ss_pred             eEEEEEecccccccc
Q 008910          528 LSRYFQNRKTWLHDG  542 (549)
Q Consensus       528 lG~~~i~l~~l~~~~  542 (549)
                      ||++.|+|.++....
T Consensus        75 lG~v~i~L~~v~~~~   89 (127)
T cd08394          75 VGTVWIPLSTIRQSN   89 (127)
T ss_pred             eEEEEEEhHHcccCC
Confidence            999999999997653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.62  E-value=3.4e-15  Score=128.34  Aligned_cols=91  Identities=30%  Similarity=0.500  Sum_probs=81.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY  527 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  527 (549)
                      +|+|+|++|++|+..+..+.+||||++++++  .+++|++++++.||.|||+|.|.+.......|.|+|||++..++ ++
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~   78 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDF   78 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECC--EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcE
Confidence            4899999999999998888999999999976  67899999999999999999999987666789999999998876 69


Q ss_pred             eEEEEEeccccccc
Q 008910          528 LSRYFQNRKTWLHD  541 (549)
Q Consensus       528 lG~~~i~l~~l~~~  541 (549)
                      ||++.+++.++...
T Consensus        79 iG~~~~~l~~l~~~   92 (123)
T cd04025          79 LGKVVFSIQTLQQA   92 (123)
T ss_pred             eEEEEEEHHHcccC
Confidence            99999999998654

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.62  E-value=5.6e-15  Score=127.05  Aligned_cols=106  Identities=25%  Similarity=0.420  Sum_probs=90.0

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEec---CCCCEEEEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  333 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~  333 (549)
                      ...+.|+|+|++|++|++.+..+.+||||++.+.+..  ....+|++++++.||.|||+|.|....   .....+.|+||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            4568899999999999999888999999999986432  357899999999999999999986332   23468999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEE
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLK  365 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~  365 (549)
                      |++.. .+++||++.++++++..++.++.|+.
T Consensus        92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             EcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence            99987 88999999999999998877777654

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.61  E-value=4e-15  Score=130.47  Aligned_cols=91  Identities=35%  Similarity=0.584  Sum_probs=82.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R  526 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d  526 (549)
                      |.|.|+|++|+||+..+. +.+||||++++++  ++++|++++++.||+|||.|.|.+.++ ...|.|+|||++.+++ +
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~--~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd   77 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN--QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD   77 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC--EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence            789999999999998887 8899999999986  788999999999999999999999876 6689999999998876 6


Q ss_pred             eeEEEEEecccccccc
Q 008910          527 YLSRYFQNRKTWLHDG  542 (549)
Q Consensus       527 ~lG~~~i~l~~l~~~~  542 (549)
                      +||++.+++.+++...
T Consensus        78 ~iG~a~i~l~~l~~~~   93 (145)
T cd04038          78 SMGEAEIDLEPLVEAA   93 (145)
T ss_pred             EEEEEEEEHHHhhhhh
Confidence            9999999999987643

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.61  E-value=4.9e-15  Score=130.64  Aligned_cols=100  Identities=37%  Similarity=0.486  Sum_probs=85.0

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc---------------------------eeeecccccCCCCCcc
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---------------------------TRNKTRVVNDCLNPIW  497 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---------------------------~~~kT~~~~~t~nP~w  497 (549)
                      +..+.|.|+|++|+||+..+..|.+||||++.+....                           ..++|+++.+|.||.|
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W  104 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW  104 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence            5679999999999999999999999999999985321                           2378999999999999


Q ss_pred             ccEEEEEEecCCCCeEEEEEEECCCCCCceeEEEEEeccccccccccceecC
Q 008910          498 NQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       498 ne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      ||+|.|.+..+....|.|+|||++   +++||++.++++++...  ..-.||
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~--~~d~W~  151 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC--GLDSWF  151 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC--CCCCeE
Confidence            999999998766678999999998   67999999999999733  244443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.61  E-value=5.8e-15  Score=128.84  Aligned_cols=92  Identities=24%  Similarity=0.304  Sum_probs=79.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC----ceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++...    ..++||++++++.||+|||+|.|.+..  .....|.|+|||.
T Consensus        14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~   93 (138)
T cd08408          14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK   93 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence            4789999999999999998899999999999531    136799999999999999999999873  3456899999999


Q ss_pred             CCCCC-ceeEEEEEecccc
Q 008910          521 DTFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l  538 (549)
                      +..++ ++||++.+++...
T Consensus        94 ~~~~~~~~iG~v~l~~~~~  112 (138)
T cd08408          94 RKMKRKEMIGWFSLGLNSS  112 (138)
T ss_pred             CCCCCCcEEEEEEECCcCC
Confidence            98776 6999999988754

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.61  E-value=4.2e-15  Score=127.48  Aligned_cols=93  Identities=33%  Similarity=0.552  Sum_probs=82.6

Q ss_pred             cEEEEEEEEeecCCCCCC------CCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECC
Q 008910          448 GVLSVTVILAENLPASDL------MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~------~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~  521 (549)
                      |.|.|+|++|+||+..+.      .|.+||||++++++  ..++|++++++.||.|||.|.|.+.+.....|.|+|||++
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~   78 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED   78 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC
Confidence            679999999999998774      36799999999986  7889999999999999999999998666779999999999


Q ss_pred             CCCCceeEEEEEecccccccc
Q 008910          522 TFGKRYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       522 ~~~~d~lG~~~i~l~~l~~~~  542 (549)
                      ..++++||++.+++.++...+
T Consensus        79 ~~~~~~iG~~~i~l~~l~~~~   99 (121)
T cd08391          79 PDKDDFLGRLSIDLGSVEKKG   99 (121)
T ss_pred             CCCCCcEEEEEEEHHHhcccC
Confidence            885579999999999997654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.61  E-value=6.8e-15  Score=128.82  Aligned_cols=92  Identities=30%  Similarity=0.450  Sum_probs=78.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|++|+..+..|.+||||++++..   ...+++|++++++.||.|||.|.|.+...  ....|.|+|||++
T Consensus        14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~   93 (136)
T cd08402          14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence            478999999999999999889999999999853   12467899999999999999999998643  2347999999999


Q ss_pred             CCCC-ceeEEEEEecccc
Q 008910          522 TFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l  538 (549)
                      .+++ ++||++.+++...
T Consensus        94 ~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          94 RIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             CCCCCceeEEEEECCccC
Confidence            8876 6999999999763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.61  E-value=3.6e-15  Score=131.13  Aligned_cols=98  Identities=24%  Similarity=0.343  Sum_probs=79.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEe---------------cCCCC
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVE---------------DGLHD  511 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~---------------~~~~~  511 (549)
                      |.|+|++|+||+.  .+|.+||||++++.+.   ..+++|+++++|.||+|||.|.|.+.               +....
T Consensus         2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            8899999999998  5688999999999652   25679999999999999999999995               11234


Q ss_pred             eEEEEEEECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910          512 MLIAEVWDHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       512 ~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      .|.|.|||++..++ ++||++.|++.++...+.....||
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~  118 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWY  118 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCccee
Confidence            79999999998765 699999999999876522334443

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.61  E-value=5.1e-15  Score=128.77  Aligned_cols=106  Identities=33%  Similarity=0.543  Sum_probs=92.8

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeC--CCCeEEeeeeCCCCCCeeccEEEEEEecC-CCCEEEEEEEECCCC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEGI  338 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~~~  338 (549)
                      |.|+|+|++|++|+..+..+.+||||++.+.+.  ....++|++++++.||.|||+|.|.+... ..+.|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            889999999999999888889999999999742  23578999999999999999999998654 346899999999988


Q ss_pred             CCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          339 QSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      +++++||++.+++.++... ..+.|++|..
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~  121 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN  121 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence            8899999999999998755 6789999964

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.61  E-value=4.7e-15  Score=129.36  Aligned_cols=92  Identities=30%  Similarity=0.446  Sum_probs=79.7

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEEC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~  520 (549)
                      ..+.|.|+|++|+||+..+..|.+||||++++...   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~   90 (133)
T cd08384          11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK   90 (133)
T ss_pred             CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence            34889999999999999998899999999999532   3467999999999999999999998643  345899999999


Q ss_pred             CCCCC-ceeEEEEEeccc
Q 008910          521 DTFGK-RYLSRYFQNRKT  537 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~  537 (549)
                      +..++ ++||++.+++..
T Consensus        91 d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          91 DIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             CCCCCccEEEEEEEecCC
Confidence            98765 699999999986

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.61  E-value=5.5e-15  Score=126.63  Aligned_cols=92  Identities=27%  Similarity=0.436  Sum_probs=81.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-cee
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYL  528 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l  528 (549)
                      |.|+|++|++|+..+..|.+||||++++++ ...++|+++.++.||.|||.|.|.+.++ ...|.|+|||++..++ ++|
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i   79 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM   79 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence            789999999999999889999999999875 3578999999999999999999998764 4689999999999865 799


Q ss_pred             EEEEEeccccccccc
Q 008910          529 SRYFQNRKTWLHDGS  543 (549)
Q Consensus       529 G~~~i~l~~l~~~~~  543 (549)
                      |++.+++.++...+.
T Consensus        80 G~~~~~l~~l~~~~~   94 (121)
T cd04042          80 GSAFVDLSTLELNKP   94 (121)
T ss_pred             EEEEEEHHHcCCCCC
Confidence            999999999875443

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.61  E-value=1.1e-14  Score=125.28  Aligned_cols=98  Identities=23%  Similarity=0.313  Sum_probs=82.5

Q ss_pred             ccEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCC
Q 008910          447 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT  522 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~  522 (549)
                      .+.|.|+|++|+||+..+ ..+.+||||++++.. ....++|++++++.||+|||.|.|.+...  ....|.|+|||++.
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~   92 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR   92 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence            478999999999999988 678899999999842 23567899999999999999999998643  24579999999998


Q ss_pred             CCC-ceeEEEEEecccccccccc
Q 008910          523 FGK-RYLSRYFQNRKTWLHDGSE  544 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~  544 (549)
                      .++ ++||++.++++++...+..
T Consensus        93 ~~~~~~iG~~~i~L~~l~~~~~~  115 (123)
T cd08390          93 FSRHCIIGHVLFPLKDLDLVKGG  115 (123)
T ss_pred             CCCCcEEEEEEEeccceecCCCc
Confidence            775 6999999999999665543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.61  E-value=7.3e-15  Score=128.18  Aligned_cols=110  Identities=26%  Similarity=0.450  Sum_probs=88.4

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~  333 (549)
                      .+..|.|.|+|++|++|+..|..|.+||||++++.+..  .++++|++++++.||.|||+|.|.+...  ....|.|+||
T Consensus        10 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~   89 (135)
T cd08410          10 LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVY   89 (135)
T ss_pred             CCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEE
Confidence            35669999999999999999988999999999986432  2457899999999999999999998532  3347999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      |++..+++++||++.+...... +...++|..+..
T Consensus        90 d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~  123 (135)
T cd08410          90 GHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLN  123 (135)
T ss_pred             eCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHh
Confidence            9999899999999887653322 223567877754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.61  E-value=3.1e-16  Score=152.27  Aligned_cols=109  Identities=32%  Similarity=0.571  Sum_probs=94.7

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC-CCCEEEEEEEECC
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  336 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~  336 (549)
                      ....|.|+|.+|+||.++|.+|.|||||++.+-|+++  .+++|++++.++||+|||+|.|.+... ....|.++|||+|
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD  257 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD  257 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence            3467899999999999999999999999999986543  368899999999999999999998744 3558999999999


Q ss_pred             CCCCCceeEEEEEECcccCCCceeEEEEEcccc
Q 008910          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (549)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (549)
                      +.+++||+|..++.+++|... ..+.||.|...
T Consensus       258 rTsRNDFMGslSFgisEl~K~-p~~GWyKlLsq  289 (683)
T KOG0696|consen  258 RTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQ  289 (683)
T ss_pred             ccccccccceecccHHHHhhc-chhhHHHHhhh
Confidence            999999999999999998764 45789998754

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.60  E-value=1.4e-14  Score=123.41  Aligned_cols=114  Identities=31%  Similarity=0.512  Sum_probs=89.0

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC--CCEEEEEEEECCCCCCC
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDDEGIQSS  341 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d~~~~~~d  341 (549)
                      |.|+|++|++|+..   +.+||||+++++  +.+.++|+++++ .||.|||+|.|.+....  ...|.+.+||.+...++
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~   75 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD   75 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence            78999999999976   789999999997  234578999988 99999999999987542  34688888998866556


Q ss_pred             ceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      ..+|.  +++..+..+...+.|++|.+..   ......|+|++++.|
T Consensus        76 ~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~  117 (117)
T cd08383          76 IVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLRARY  117 (117)
T ss_pred             eEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEEEEC
Confidence            66665  5555555577789999997532   234668999999876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.60  E-value=1.5e-14  Score=124.39  Aligned_cols=100  Identities=28%  Similarity=0.368  Sum_probs=83.5

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEec---CCCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|++|+..+..+.+||||++++..   ...+++|++++++.||.|||.|.|....   .....+.|+|||+
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~   93 (123)
T cd04035          14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE   93 (123)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence            377999999999999988888999999999842   2347899999999999999999996322   2346899999999


Q ss_pred             CCCCCceeEEEEEeccccccccccce
Q 008910          521 DTFGKRYLSRYFQNRKTWLHDGSEAL  546 (549)
Q Consensus       521 ~~~~~d~lG~~~i~l~~l~~~~~~~~  546 (549)
                      +..++++||++.++++++..++.+.+
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~~~~~~  119 (123)
T cd04035          94 DRFGNDFLGETRIPLKKLKPNQTKQF  119 (123)
T ss_pred             CCcCCeeEEEEEEEcccCCCCcceEe
Confidence            88755799999999999987766554

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.60  E-value=4.8e-15  Score=126.61  Aligned_cols=86  Identities=28%  Similarity=0.436  Sum_probs=77.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCceeE
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLS  529 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG  529 (549)
                      |.|+|++|+||+..    .+||||++.+++  .+.+|++++++.||+|||+|.|.+.++....|.++|||++..++++||
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~--~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG   75 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGN--YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLG   75 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECC--ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceee
Confidence            78999999999887    689999999986  678999999999999999999998876677899999999987668999


Q ss_pred             EEEEeccccccc
Q 008910          530 RYFQNRKTWLHD  541 (549)
Q Consensus       530 ~~~i~l~~l~~~  541 (549)
                      ++.++++++...
T Consensus        76 ~~~i~l~~l~~~   87 (121)
T cd08378          76 GVCFDLSEVPTR   87 (121)
T ss_pred             eEEEEhHhCcCC
Confidence            999999998654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.60  E-value=6.5e-15  Score=126.50  Aligned_cols=92  Identities=23%  Similarity=0.417  Sum_probs=81.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY  527 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  527 (549)
                      +|+|+|++|++|+..+..|.+||||++++++.....||.+++++.||+|||+|.|.+..+....|.|+|||++..++ ++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            37899999999999999899999999999874445678888899999999999999876667789999999998865 79


Q ss_pred             eEEEEEecccccc
Q 008910          528 LSRYFQNRKTWLH  540 (549)
Q Consensus       528 lG~~~i~l~~l~~  540 (549)
                      ||++.+++++.+.
T Consensus        81 iG~~~i~l~~~~~   93 (124)
T cd04037          81 IGETVIDLEDRFF   93 (124)
T ss_pred             eEEEEEeeccccc
Confidence            9999999998864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.60  E-value=2.3e-14  Score=118.92  Aligned_cols=82  Identities=28%  Similarity=0.505  Sum_probs=70.4

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEEC------
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD------  335 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~------  335 (549)
                      |.|+|++|+||.     +.+||||++.+.+.+  ....+|+++++|+||+|||+|.|.+.  ..+.|.+.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence            679999999996     569999999987543  35799999999999999999999986  367999999998      


Q ss_pred             -CCCCCCceeEEEEEECc
Q 008910          336 -EGIQSSELIGCAQVRLC  352 (549)
Q Consensus       336 -~~~~~d~~lG~~~v~l~  352 (549)
                       |..+.|+++|.+.+.|+
T Consensus        74 ~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             ccccCcccEEEEEEEEEC
Confidence             45678999998888875

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.60  E-value=7.7e-15  Score=125.97  Aligned_cols=91  Identities=27%  Similarity=0.490  Sum_probs=80.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC---c
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK---R  526 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~---d  526 (549)
                      |.|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|.|.+..  ...|.|+|||++.+++   +
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~   78 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQG   78 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECC-ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCc
Confidence            789999999999999889999999999964 467899999999999999999999964  5789999999998763   4


Q ss_pred             eeEEEEEeccccccccc
Q 008910          527 YLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       527 ~lG~~~i~l~~l~~~~~  543 (549)
                      +||++.+++++++....
T Consensus        79 ~lG~~~i~l~~l~~~~~   95 (123)
T cd08382          79 FLGCVRIRANAVLPLKD   95 (123)
T ss_pred             eEeEEEEEHHHccccCC
Confidence            99999999999976543

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.59  E-value=7.7e-15  Score=131.21  Aligned_cols=100  Identities=27%  Similarity=0.458  Sum_probs=83.8

Q ss_pred             cccEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEEeCCceeeecccccCCCCC
Q 008910          446 IRGVLSVTVILAENLPASD------------------------------LMGKADPYVVLTMKKSETRNKTRVVNDCLNP  495 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~------------------------------~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP  495 (549)
                      --|.|.|+|++|++|+.+|                              ..|.+||||++.+++ .+..||++++++.||
T Consensus         5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-~~~~rT~v~~~~~nP   83 (158)
T cd04015           5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-ARVARTRVIENSENP   83 (158)
T ss_pred             EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-eEeeEEEEeCCCCCC
Confidence            3589999999999999876                              346689999999986 345799999999999


Q ss_pred             ccccEEEEEEecCCCCeEEEEEEECCCCCCceeEEEEEeccccccccccceec
Q 008910          496 IWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       496 ~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      +|||+|.|.+.++ ...|.|+|||++..++++||++.++++++.. +.....|
T Consensus        84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~-g~~~~~w  134 (158)
T cd04015          84 VWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLS-GEPVEGW  134 (158)
T ss_pred             ccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccC-CCCcceE
Confidence            9999999998754 3579999999998888999999999999865 3333344

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.59  E-value=1.3e-14  Score=126.79  Aligned_cols=90  Identities=24%  Similarity=0.283  Sum_probs=76.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+ .+.+||||++++...   ..++||++++++.||+|||.|.|.+..  .....|.|+|||.+
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~   92 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG   92 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence            377999999999999888 778999999998532   246789999999999999999999863  24468999999999


Q ss_pred             CCCC-ceeEEEEEeccc
Q 008910          522 TFGK-RYLSRYFQNRKT  537 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~  537 (549)
                      ..++ ++||++.|+...
T Consensus        93 ~~~~~~~lG~v~ig~~~  109 (137)
T cd08409          93 GVRKSKLLGRVVLGPFM  109 (137)
T ss_pred             CCCCcceEEEEEECCcc
Confidence            8766 699999998643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.59  E-value=1.4e-14  Score=126.41  Aligned_cols=91  Identities=32%  Similarity=0.430  Sum_probs=77.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|++|+..+..|.+||||++++..   ...+++|++++++.||.|||.|.|.+...  ....|.|+|||++
T Consensus        13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~   92 (134)
T cd08403          13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence            478999999999999999899999999999853   23467899989999999999999998632  3346999999999


Q ss_pred             CCCC-ceeEEEEEeccc
Q 008910          522 TFGK-RYLSRYFQNRKT  537 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~  537 (549)
                      ..++ ++||++.+++..
T Consensus        93 ~~~~~~~IG~~~l~~~~  109 (134)
T cd08403          93 RVGHNELIGVCRVGPNA  109 (134)
T ss_pred             CCCCCceeEEEEECCCC
Confidence            9876 699999998873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.59  E-value=7.6e-15  Score=129.28  Aligned_cols=92  Identities=25%  Similarity=0.381  Sum_probs=79.9

Q ss_pred             EEEEEEEeecCCCCCCC--------------CCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecC-CCCeEE
Q 008910          450 LSVTVILAENLPASDLM--------------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLI  514 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~--------------g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~  514 (549)
                      |.|+|++|++|+.++..              +.+||||++.+++  ++.||++++++.||+|||+|.|.+..+ ..+.|.
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g--~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG--QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC--EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence            78999999999998744              3689999999987  567999999999999999999997644 346899


Q ss_pred             EEEEECCCCCC-ceeEEEEEeccccccccc
Q 008910          515 AEVWDHDTFGK-RYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       515 i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~  543 (549)
                      |+|||++..++ |+||++.+++.++...+.
T Consensus        80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~  109 (151)
T cd04018          80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGD  109 (151)
T ss_pred             EEEEECCCCCCCCEEEEEEEeHHHhccCCc
Confidence            99999998855 799999999999977664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.59  E-value=9.7e-15  Score=124.52  Aligned_cols=92  Identities=27%  Similarity=0.459  Sum_probs=82.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R  526 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d  526 (549)
                      |.|.|+|++|++|+..+..+.+||||++++++ ...++|+++.++.||.|||.|.|.+..+ ...|.|+|||++..++ +
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~   78 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-IVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDR   78 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-EEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence            67999999999999998889999999999965 3678999999999999999999998754 4689999999998876 5


Q ss_pred             eeEEEEEeccccccc
Q 008910          527 YLSRYFQNRKTWLHD  541 (549)
Q Consensus       527 ~lG~~~i~l~~l~~~  541 (549)
                      +||++.+++.+++..
T Consensus        79 ~IG~~~~~l~~l~~~   93 (120)
T cd04045          79 SLGSVEINVSDLIKK   93 (120)
T ss_pred             eeeEEEEeHHHhhCC
Confidence            999999999999876

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.59  E-value=2e-15  Score=131.96  Aligned_cols=109  Identities=28%  Similarity=0.430  Sum_probs=93.5

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecCC--CCEEEEEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYD  334 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d  334 (549)
                      +..+.|.|+|++|++|+..+..+.+||||++++.+...  ..++|++++++.||.|||+|.|.+....  ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d   90 (134)
T cd00276          11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence            34689999999999999998888999999999975432  3578999999999999999999986542  5689999999


Q ss_pred             CCCCCCCceeEEEEEECcccCCCceeEEEEEcccc
Q 008910          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (549)
Q Consensus       335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (549)
                      ++..+++++||++.+++++  .+...++|+.|...
T Consensus        91 ~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~  123 (134)
T cd00276          91 KDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS  123 (134)
T ss_pred             cCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence            9988889999999999998  56667899988653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.59  E-value=5.4e-14  Score=121.85  Aligned_cols=119  Identities=25%  Similarity=0.402  Sum_probs=96.0

Q ss_pred             EEEEEEEEcccccccC--CCCCCCcEEEEEEeeCC---CCeEEeeeeCCCC-CCeeccEEEEEEecCCCCEEEEEEEECC
Q 008910          263 TLEVKLVQAKGLTNKD--LIGKSDPYAVLFVRPLP---EKTKKSKTINNDL-NPIWNEHFEFIVEDESTQHLVVRIYDDE  336 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~-nP~w~e~f~f~v~~~~~~~L~i~v~d~~  336 (549)
                      .|+|+|++|++|+..+  ..+.+||||++++...+   ...++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999887  57889999999996432   4578999987765 9999999999998766668999999999


Q ss_pred             CCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      .. ++++||++.++++++..+   ..|+.|....   ......|.|.+.+..
T Consensus        83 ~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~---~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLRQG---YRHVPLLDSK---GEPLELSTLFVHIDI  127 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhcCc---eEEEEecCCC---CCCCcceeEEEEEEE
Confidence            87 899999999999999665   3577775321   122456888887764

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.59  E-value=1.8e-14  Score=125.38  Aligned_cols=94  Identities=33%  Similarity=0.532  Sum_probs=81.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECCCC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF  523 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~~~  523 (549)
                      +.|.|+|++|+||+..+..+.+||||++.+.+   ...+++|+++.++.||.|||+|.|.+... ....|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            77999999999999988888999999999963   23678999999999999999999998754 345899999999987


Q ss_pred             CC-ceeEEEEEeccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~  541 (549)
                      ++ ++||++.+++.++...
T Consensus        93 ~~~~~iG~~~~~l~~l~~~  111 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM  111 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC
Confidence            66 6999999999999754

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.58  E-value=1.1e-14  Score=127.24  Aligned_cols=91  Identities=32%  Similarity=0.506  Sum_probs=79.1

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecCC--CCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..+.+||||++++...   ..+++|+++.++.||.|||+|.|.+....  ...|.|+|||++
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~   92 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence            3789999999999999888889999999998643   23679999999999999999999987542  568999999999


Q ss_pred             CCCC-ceeEEEEEeccc
Q 008910          522 TFGK-RYLSRYFQNRKT  537 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~  537 (549)
                      ..++ ++||++.+++++
T Consensus        93 ~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          93 SVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             CCCCCceeEEEEECCCC
Confidence            8665 699999999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.58  E-value=1.5e-14  Score=123.87  Aligned_cols=90  Identities=24%  Similarity=0.451  Sum_probs=79.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-cee
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYL  528 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l  528 (549)
                      |.|+|++|++|+..+..|.+||||++.+++ ....||++++++.||.|||.|.|.+.+ ....|.|+|||++..++ ++|
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~i   79 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVI   79 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECC-EeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEE
Confidence            789999999999999999999999999975 345799999999999999999999864 34689999999998876 699


Q ss_pred             EEEEEeccccccc
Q 008910          529 SRYFQNRKTWLHD  541 (549)
Q Consensus       529 G~~~i~l~~l~~~  541 (549)
                      |++.++++++...
T Consensus        80 G~~~~~~~~~~~~   92 (121)
T cd04054          80 GKVSLTREVISAH   92 (121)
T ss_pred             EEEEEcHHHhccC
Confidence            9999999888654

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.56  E-value=3.6e-14  Score=121.27  Aligned_cols=91  Identities=36%  Similarity=0.581  Sum_probs=80.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R  526 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d  526 (549)
                      |.|.|+|++|+||+..+..+.+||||++++++  ..++|++++++.||.|||+|.|.+.+. ...+.|+|||++..++ +
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~   77 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN--ARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPE   77 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC--EeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCc
Confidence            67999999999999999888999999999876  567999999999999999999998753 4689999999998665 7


Q ss_pred             eeEEEEEeccccccc
Q 008910          527 YLSRYFQNRKTWLHD  541 (549)
Q Consensus       527 ~lG~~~i~l~~l~~~  541 (549)
                      +||++.+++.++...
T Consensus        78 ~iG~~~~~l~~~~~~   92 (119)
T cd08377          78 FLGKVAIPLLSIKNG   92 (119)
T ss_pred             eeeEEEEEHHHCCCC
Confidence            999999999998644

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.56  E-value=2e-14  Score=124.08  Aligned_cols=90  Identities=23%  Similarity=0.405  Sum_probs=78.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-cee
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYL  528 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l  528 (549)
                      |.|+|++|+||+.  ..|.+||||+++++....+++|+++.+|.||+|||.|.|.+.. ....|.|+|||++..++ ++|
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l   77 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL   77 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence            5799999999988  6789999999999754467899999999999999999999863 45689999999998875 699


Q ss_pred             EEEEEecccccccc
Q 008910          529 SRYFQNRKTWLHDG  542 (549)
Q Consensus       529 G~~~i~l~~l~~~~  542 (549)
                      |++.++++++....
T Consensus        78 G~~~i~l~~l~~~~   91 (126)
T cd08678          78 GLAIVPFDELRKNP   91 (126)
T ss_pred             EEEEEeHHHhccCC
Confidence            99999999987654

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.56  E-value=2.4e-14  Score=122.24  Aligned_cols=91  Identities=19%  Similarity=0.300  Sum_probs=78.3

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910          450 LSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY  527 (549)
Q Consensus       450 L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  527 (549)
                      |.|.|.+|+||+..+ ..|.+||||++++++ ...++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..++ ++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~   79 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-EEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSV   79 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECC-ccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCce
Confidence            678999999999874 457899999999965 3468999999999999999999999753 4689999999998876 69


Q ss_pred             eEEEEEecccccccc
Q 008910          528 LSRYFQNRKTWLHDG  542 (549)
Q Consensus       528 lG~~~i~l~~l~~~~  542 (549)
                      ||++.++++++...+
T Consensus        80 iG~~~i~l~~l~~~~   94 (121)
T cd08401          80 IGKVAIKKEDLHKYY   94 (121)
T ss_pred             EEEEEEEHHHccCCC
Confidence            999999999987543

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.56  E-value=3.1e-14  Score=122.56  Aligned_cols=94  Identities=32%  Similarity=0.585  Sum_probs=81.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccC-CCCCccccEEEEEEecC---CCCeEEEEEEECCCC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTF  523 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~---~~~~l~i~V~d~~~~  523 (549)
                      |.|.|+|++|++|+..+..+.+||||++++++  ..++|++..+ +.||.|||.|.|.+..+   ....|.|+|||++.+
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~   78 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT--QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF   78 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECC--EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC
Confidence            67999999999999988888999999999976  5678888774 89999999999999876   356899999999987


Q ss_pred             CC-ceeEEEEEeccccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~  543 (549)
                      ++ ++||++.+++.+++.++.
T Consensus        79 ~~d~~iG~~~i~l~~l~~~~~   99 (124)
T cd04049          79 SDDDFIGEATIHLKGLFEEGV   99 (124)
T ss_pred             CCCCeEEEEEEEhHHhhhCCC
Confidence            65 699999999999987653

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.56  E-value=6.5e-15  Score=143.21  Aligned_cols=95  Identities=34%  Similarity=0.555  Sum_probs=84.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECCCC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF  523 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~~~  523 (549)
                      ..|.|+|..|+||.++|.+|.+||||++.+-   +...++||++++.++||+|||+|+|.+... ....|.|+|||+|+.
T Consensus       180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT  259 (683)
T KOG0696|consen  180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT  259 (683)
T ss_pred             ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence            5799999999999999999999999999983   335688999999999999999999999743 445899999999998


Q ss_pred             CC-ceeEEEEEecccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~  542 (549)
                      ++ ||+|..++++++++..+
T Consensus       260 sRNDFMGslSFgisEl~K~p  279 (683)
T KOG0696|consen  260 SRNDFMGSLSFGISELQKAP  279 (683)
T ss_pred             ccccccceecccHHHHhhcc
Confidence            87 89999999999997754

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.55  E-value=5.2e-14  Score=121.59  Aligned_cols=92  Identities=32%  Similarity=0.491  Sum_probs=80.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R  526 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d  526 (549)
                      .|+|+|++|++|+..+..+.+||||++.++.. ...+||++++++.||.|||+|.|.+.......|.|+|||++..++ +
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            58899999999999998899999999987643 356899999999999999999999987556789999999998765 6


Q ss_pred             eeEEEEEecccccc
Q 008910          527 YLSRYFQNRKTWLH  540 (549)
Q Consensus       527 ~lG~~~i~l~~l~~  540 (549)
                      +||++.+++.++..
T Consensus        82 ~iG~~~i~l~~~~~   95 (126)
T cd04043          82 LCGRASLKLDPKRF   95 (126)
T ss_pred             eEEEEEEecCHHHc
Confidence            99999999988643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.54  E-value=3.5e-14  Score=119.64  Aligned_cols=90  Identities=20%  Similarity=0.263  Sum_probs=78.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCC----CCeEEEEEEECCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDT  522 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~----~~~l~i~V~d~~~  522 (549)
                      ...|.|+|++|++|+    .|.+||||++++++  ++++|++++++.||.|||.|.|.+..+.    ...|.|+|||++.
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~   76 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG--QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS   76 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECC--EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence            367999999999998    46799999999996  6778999999999999999999986442    4589999999998


Q ss_pred             CCC-ceeEEEEEecccccccc
Q 008910          523 FGK-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~  542 (549)
                      +++ ++||++.++++++....
T Consensus        77 ~~~~~~iG~~~i~l~~v~~~~   97 (111)
T cd04011          77 LRSDTLIGSFKLDVGTVYDQP   97 (111)
T ss_pred             cccCCccEEEEECCccccCCC
Confidence            876 69999999999997653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.53  E-value=7.3e-14  Score=120.33  Aligned_cols=96  Identities=30%  Similarity=0.491  Sum_probs=82.5

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-
Q 008910          448 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-  525 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-  525 (549)
                      |.|.|+|++|++|+..+ ..+.+||||++++++....++|+++.++.||.|||.|.|.+. ...+.|.|+|||++..++ 
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCC
Confidence            78999999999999655 456789999999975346789999999999999999999988 456789999999998765 


Q ss_pred             ceeEEEEEecccccccccc
Q 008910          526 RYLSRYFQNRKTWLHDGSE  544 (549)
Q Consensus       526 d~lG~~~i~l~~l~~~~~~  544 (549)
                      ++||.+.+++.++...+..
T Consensus        81 ~~iG~~~~~l~~l~~~~~~   99 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQ   99 (124)
T ss_pred             ceeEEEEEEHHHhccCccc
Confidence            6999999999999876543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.53  E-value=8.2e-14  Score=121.58  Aligned_cols=93  Identities=26%  Similarity=0.490  Sum_probs=80.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-----ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF  523 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~  523 (549)
                      .|.|+|++|+||+..+..|.+||||++++.+.     ..+++|+++++|.||.|||+|.|.+.. ....|.++|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence            37899999999999998889999999999753     125789999999999999999999864 346799999999988


Q ss_pred             CC-ceeEEEEEecccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~  542 (549)
                      ++ ++||++.+++.++....
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~   99 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTET   99 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcC
Confidence            76 69999999999997654

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.53  E-value=8.1e-14  Score=117.26  Aligned_cols=91  Identities=26%  Similarity=0.439  Sum_probs=76.5

Q ss_pred             EEEEcccccccCCCCCCCcEEEEEEeeCC---CCeEEeeeeCCCCCCeeccEEEEEEecC----CCCEEEEEEEECCCCC
Q 008910          267 KLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIYDDEGIQ  339 (549)
Q Consensus       267 ~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~nP~w~e~f~f~v~~~----~~~~L~i~v~d~~~~~  339 (549)
                      -.++|++|+.+|..|.+||||++++.+..   ...++|+++++++||+|| +|.|.+...    ..+.|.|+|||++..+
T Consensus         5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~   83 (110)
T cd04047           5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG   83 (110)
T ss_pred             EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence            34689999999999999999999987432   235899999999999999 688876433    1568999999999999


Q ss_pred             CCceeEEEEEECcccCCCc
Q 008910          340 SSELIGCAQVRLCELEPGK  358 (549)
Q Consensus       340 ~d~~lG~~~v~l~~l~~~~  358 (549)
                      +|++||++.++++++....
T Consensus        84 ~d~~iG~~~~~l~~l~~~~  102 (110)
T cd04047          84 KHDLIGEFETTLDELLKSS  102 (110)
T ss_pred             CCcEEEEEEEEHHHHhcCC
Confidence            9999999999999987543

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.52  E-value=8.8e-14  Score=121.09  Aligned_cols=92  Identities=21%  Similarity=0.349  Sum_probs=79.8

Q ss_pred             ccEEEEEEEEeecCCCCCCC----------CCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEE
Q 008910          447 RGVLSVTVILAENLPASDLM----------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAE  516 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~----------g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~  516 (549)
                      .|.|.|+|++|++|...+..          |.+||||++.+++ .+..+|+++++|.||.|||+|+|.+.  ....|.|.
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~   79 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELT   79 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEE
Confidence            48899999999999987752          5789999999985 34568899899999999999999997  34689999


Q ss_pred             EEECCCCCC-ceeEEEEEeccccccc
Q 008910          517 VWDHDTFGK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       517 V~d~~~~~~-d~lG~~~i~l~~l~~~  541 (549)
                      |||++..+. ++||++.++++++...
T Consensus        80 v~d~~~~~~~~~iG~~~i~l~~l~~~  105 (132)
T cd04014          80 VFHDAAIGPDDFVANCTISFEDLIQR  105 (132)
T ss_pred             EEeCCCCCCCceEEEEEEEhHHhccc
Confidence            999988766 6999999999999874

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.52  E-value=4.1e-14  Score=164.69  Aligned_cols=120  Identities=14%  Similarity=0.304  Sum_probs=103.2

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC-CCEEEEEEEECCCC
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEGI  338 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~~~  338 (549)
                      -.|.|.|+|++|+||.  +..|.+||||++.++.  .++.||++++++.||+|||+|.|.+.++. .+.+.++|||+|.+
T Consensus      1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             CCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            4699999999999998  4468999999999982  33678999999999999999999998874 46799999999998


Q ss_pred             CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeE---EEEEEEEee
Q 008910          339 QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ---VHLELLYCP  390 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~---l~l~l~~~p  390 (549)
                      + ++.+|.+.+++.++..++....||+|.+      +++..|.   |++++.|.+
T Consensus      2054 ~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2054 G-KSSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             C-CCCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEEEEecC
Confidence            5 5599999999999998999999999953      3345677   999999853

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.52  E-value=9.8e-14  Score=118.67  Aligned_cols=93  Identities=25%  Similarity=0.309  Sum_probs=78.6

Q ss_pred             EEEEeecCCCCCCCCCCCcEEEEEEeCCc-----eeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCC----C
Q 008910          453 TVILAENLPASDLMGKADPYVVLTMKKSE-----TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT----F  523 (549)
Q Consensus       453 ~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~----~  523 (549)
                      ..++|++|+..+..|.+||||++++.+..     ..++|++++++.||+|||+|.|.+.......|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            45889999999988999999999997633     35899999999999999999998765455689999999996    5


Q ss_pred             CC-ceeEEEEEeccccccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHDGSEA  545 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~  545 (549)
                      ++ ++||++.+++.+++....+.
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~  107 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQK  107 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcE
Confidence            55 79999999999998665443

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.52  E-value=1.4e-13  Score=118.78  Aligned_cols=88  Identities=33%  Similarity=0.633  Sum_probs=77.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC-----
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-----  523 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~-----  523 (549)
                      .|.|+|++|++|+..+..|.+||||++++++  ..++|+++.++.||.|||.|.|.+..+ ...|.|+|||++..     
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~   78 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK--TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRL   78 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECC--EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCccccc
Confidence            6899999999999999889999999999975  678999999999999999999998754 46899999999852     


Q ss_pred             -------CCceeEEEEEeccccc
Q 008910          524 -------GKRYLSRYFQNRKTWL  539 (549)
Q Consensus       524 -------~~d~lG~~~i~l~~l~  539 (549)
                             .+++||++.+++.++.
T Consensus        79 ~~~~~~~~~~~iG~~~i~l~~~~  101 (127)
T cd04027          79 KQKFTRESDDFLGQTIIEVRTLS  101 (127)
T ss_pred             ceeccccCCCcceEEEEEhHHcc
Confidence                   2469999999998874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.51  E-value=1.6e-13  Score=118.25  Aligned_cols=96  Identities=19%  Similarity=0.311  Sum_probs=77.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-c
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-R  526 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d  526 (549)
                      ..|.|+|++|+||+..   +.+||||++.+++ .+..+|++ +++.||.|||.|.|.+..+....++|.|||++..++ +
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE-VKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECC-EeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            4699999999999874   4689999999975 34567887 468999999999998765544679999999998876 6


Q ss_pred             eeEEEEEeccccccccccceecC
Q 008910          527 YLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       527 ~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +||++.+++.++.. +.....||
T Consensus        79 ~iG~v~i~l~~l~~-~~~~~~W~  100 (126)
T cd08400          79 EIAEVTVQLSKLQN-GQETDEWY  100 (126)
T ss_pred             eEEEEEEEHhHccC-CCcccEeE
Confidence            99999999999865 33334443

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.51  E-value=9.3e-14  Score=121.29  Aligned_cols=91  Identities=23%  Similarity=0.368  Sum_probs=78.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--ceeeecccccCCCCCccccEEEEEEecC---------------CCCe
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKS--ETRNKTRVVNDCLNPIWNQTFDFVVEDG---------------LHDM  512 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~---------------~~~~  512 (549)
                      |.|.|++|++|+.. ..|.+||||+++++..  ..+++|+++.++.||.|||.|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57899999999988 7889999999999731  3678999999999999999999998764               3458


Q ss_pred             EEEEEEECCCCCC-ceeEEEEEeccccccc
Q 008910          513 LIAEVWDHDTFGK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       513 l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~  541 (549)
                      |.|+|||++..++ ++||++.+++.++...
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~  109 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQA  109 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCC
Confidence            9999999998755 6999999999998754

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.50  E-value=1.9e-13  Score=119.30  Aligned_cols=84  Identities=27%  Similarity=0.514  Sum_probs=73.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecC---------CCCeEEEEEEE
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG---------LHDMLIAEVWD  519 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---------~~~~l~i~V~d  519 (549)
                      .|.|+|++|++|+..+..|.+||||++.+++  .+++|+++++|.||.|||.|.|.+...         ....|.|+|||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d   79 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN--QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD   79 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECC--eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence            5899999999999999999999999999976  678999999999999999999985321         12469999999


Q ss_pred             CCCCCC-ceeEEEEEe
Q 008910          520 HDTFGK-RYLSRYFQN  534 (549)
Q Consensus       520 ~~~~~~-d~lG~~~i~  534 (549)
                      ++..++ ++||++.+.
T Consensus        80 ~d~~~~d~~iG~~~i~   95 (135)
T cd04017          80 QDSVGKDEFLGRSVAK   95 (135)
T ss_pred             CcCCCCCccceEEEee
Confidence            998876 699999874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.50  E-value=1.7e-13  Score=116.29  Aligned_cols=92  Identities=36%  Similarity=0.594  Sum_probs=80.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-cee
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYL  528 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l  528 (549)
                      |+|+|++|++|+..+..+.+||||++.+++ ...++|+++.++.||.|||+|.|.+.......+.|+|||++..++ ++|
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL   79 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence            578999999999988888899999999965 356799999999999999999999986666789999999998765 699


Q ss_pred             EEEEEecccccccc
Q 008910          529 SRYFQNRKTWLHDG  542 (549)
Q Consensus       529 G~~~i~l~~l~~~~  542 (549)
                      |++.+++.++....
T Consensus        80 G~~~~~l~~l~~~~   93 (115)
T cd04040          80 GSAYIDLSDLEPEE   93 (115)
T ss_pred             EEEEEEHHHcCCCC
Confidence            99999999986643

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.50  E-value=1.9e-13  Score=118.59  Aligned_cols=91  Identities=26%  Similarity=0.448  Sum_probs=77.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc-----------eeeecccccCCCCCcc-ccEEEEEEecCCCCeEEEE
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSE-----------TRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE  516 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-----------~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~l~i~  516 (549)
                      +..|++++|+||+ .+..|.+||||++++....           ++++|+++++++||+| ||.|.|.+.  .++.|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence            4678999999998 6678999999999995322           3689999999999999 999999985  34689999


Q ss_pred             EEECCCCC----CceeEEEEEecccccccc
Q 008910          517 VWDHDTFG----KRYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       517 V~d~~~~~----~d~lG~~~i~l~~l~~~~  542 (549)
                      |||++..+    +++||++.+++.+++..+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~  108 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERH  108 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccc
Confidence            99976543    479999999999997664

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.50  E-value=9.6e-14  Score=119.72  Aligned_cols=94  Identities=28%  Similarity=0.394  Sum_probs=81.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeeccccc-CCCCCccccEEEEEEecCC----CCeEEEEEEECCCC
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDTF  523 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~----~~~l~i~V~d~~~~  523 (549)
                      .|.|+|++|++|+..+..+.+||||++++++ ..+++|++.. ++.||.|||.|.|.+..+.    ...|.|+|||++..
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~   79 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP-SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS   79 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC-CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC
Confidence            3789999999999998889999999999976 4567888875 5899999999999998653    57899999999986


Q ss_pred             CC-ceeEEEEEeccccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~  543 (549)
                      ++ ++||++.+++.++...+.
T Consensus        80 ~~~~~lG~~~i~l~~l~~~~~  100 (125)
T cd04051          80 LGDKLIGEVRVPLKDLLDGAS  100 (125)
T ss_pred             CCCCcEEEEEEEHHHhhcccC
Confidence            65 699999999999987665

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.47  E-value=3.9e-13  Score=113.09  Aligned_cols=96  Identities=22%  Similarity=0.433  Sum_probs=78.2

Q ss_pred             EEEEEeecCCCCCCCCCCCcEEEEEEeCC----ceeeecccccCCCCCccccEEEEEEecC----CCCeEEEEEEECCCC
Q 008910          452 VTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDTF  523 (549)
Q Consensus       452 v~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~l~i~V~d~~~~  523 (549)
                      +..++|++|+..+..|.+||||++++.+.    ...++|++++++.||+|| .|.|.+...    ....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            44579999999999999999999998653    246899999999999999 688775432    256899999999998


Q ss_pred             CC-ceeEEEEEeccccccccccceec
Q 008910          524 GK-RYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      ++ ++||++.++++++.........+
T Consensus        83 ~~d~~iG~~~~~l~~l~~~~~~~~~~  108 (110)
T cd04047          83 GKHDLIGEFETTLDELLKSSPLEFEL  108 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence            76 69999999999998665554443

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.46  E-value=3.1e-13  Score=107.74  Aligned_cols=85  Identities=35%  Similarity=0.596  Sum_probs=76.3

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  343 (549)
                      |+|+|++|++|...+..+..|||+++++.......++|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999998888899999999998433356999999999999999999999887777789999999999888999


Q ss_pred             eEEEE
Q 008910          344 IGCAQ  348 (549)
Q Consensus       344 lG~~~  348 (549)
                      ||+|.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.45  E-value=5.5e-13  Score=115.25  Aligned_cols=85  Identities=31%  Similarity=0.552  Sum_probs=74.7

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCCCC-ceeEE
Q 008910          454 VILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-RYLSR  530 (549)
Q Consensus       454 v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~~-d~lG~  530 (549)
                      |++|++|+.  ..|.+||||++++++  .+++|++++++.||+|||.|.|.+..+  ....|.|+|||++..++ ++||+
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~--~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~   77 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRG--VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGS   77 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECC--EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEE
Confidence            689999998  578899999999976  678999999999999999999999754  45789999999998765 69999


Q ss_pred             EEEecccccccc
Q 008910          531 YFQNRKTWLHDG  542 (549)
Q Consensus       531 ~~i~l~~l~~~~  542 (549)
                      +.++++++...+
T Consensus        78 ~~~~l~~l~~~~   89 (127)
T cd08373          78 ATVSLQDLVSEG   89 (127)
T ss_pred             EEEEhhHcccCC
Confidence            999999987654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.45  E-value=8e-13  Score=116.38  Aligned_cols=92  Identities=18%  Similarity=0.277  Sum_probs=73.5

Q ss_pred             EEEEEEEeec--CCCCCCCCCCCcEEEEEE--e-CCceeeecccccCCCCCccccEEEEEEecCC--------CCeEEEE
Q 008910          450 LSVTVILAEN--LPASDLMGKADPYVVLTM--K-KSETRNKTRVVNDCLNPIWNQTFDFVVEDGL--------HDMLIAE  516 (549)
Q Consensus       450 L~v~v~~a~~--L~~~~~~g~~dpyv~v~~--~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~--------~~~l~i~  516 (549)
                      ..++|..|++  |+..+..+.+||||++++  . ...++.||+++++|+||+|||.|.|.+....        ...|.++
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            3455566666  777777788999999997  2 3356899999999999999999999996432        3479999


Q ss_pred             EEECCCC-C-CceeEEEEEeccccccc
Q 008910          517 VWDHDTF-G-KRYLSRYFQNRKTWLHD  541 (549)
Q Consensus       517 V~d~~~~-~-~d~lG~~~i~l~~l~~~  541 (549)
                      |||++.+ + +++||++.++++.+..+
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~  110 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETK  110 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEccccccc
Confidence            9999986 3 46999999999998443

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.45  E-value=6.4e-13  Score=110.36  Aligned_cols=80  Identities=24%  Similarity=0.341  Sum_probs=65.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECC-----
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD-----  521 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~-----  521 (549)
                      |.|+|++|+||+     +.+||||++++...   ..+.||+++++|+||+|||+|+|.+..  ...|.+.|||++     
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence            579999999995     45899999998642   357899999999999999999999963  568999999983     


Q ss_pred             --CCCC-ceeEEEEEecc
Q 008910          522 --TFGK-RYLSRYFQNRK  536 (549)
Q Consensus       522 --~~~~-d~lG~~~i~l~  536 (549)
                        ..++ +.+|++.+.++
T Consensus        74 ~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             ccccCcccEEEEEEEEEC
Confidence              3444 59988777664

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.42  E-value=1.5e-12  Score=112.73  Aligned_cols=98  Identities=27%  Similarity=0.437  Sum_probs=81.1

Q ss_pred             EEEEEEEEeecCCCCC--CCCCCCcEEEEEEeC----CceeeecccccCCC-CCccccEEEEEEecCCCCeEEEEEEECC
Q 008910          449 VLSVTVILAENLPASD--LMGKADPYVVLTMKK----SETRNKTRVVNDCL-NPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~--~~g~~dpyv~v~~~~----~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~~~~l~i~V~d~~  521 (549)
                      .|+|+|++|+||+..+  ..+.+||||++++.+    ...+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999887  577899999999943    23578999887765 9999999999998666668999999999


Q ss_pred             CCCCceeEEEEEecccccccccccee
Q 008910          522 TFGKRYLSRYFQNRKTWLHDGSEALR  547 (549)
Q Consensus       522 ~~~~d~lG~~~i~l~~l~~~~~~~~~  547 (549)
                      ..++++||++.++++++ ..|...++
T Consensus        83 ~~~~~~iG~~~~~l~~l-~~g~~~~~  107 (128)
T cd00275          83 SGDDDFLGQACLPLDSL-RQGYRHVP  107 (128)
T ss_pred             CCCCcEeEEEEEEhHHh-cCceEEEE
Confidence            87557999999999998 44444443

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.42  E-value=1.5e-12  Score=111.95  Aligned_cols=90  Identities=30%  Similarity=0.425  Sum_probs=77.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY  527 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  527 (549)
                      .|.|+|.+|+ |...+..+.+||||++++++. ..++|+++.++.||.|||.|.|.+..  .+.|.|+|||++..++ ++
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~-~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~   78 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ-PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVL   78 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc-ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcE
Confidence            5899999998 555555788999999999863 47899999999999999999999863  4689999999998865 69


Q ss_pred             eEEEEEecccccccc
Q 008910          528 LSRYFQNRKTWLHDG  542 (549)
Q Consensus       528 lG~~~i~l~~l~~~~  542 (549)
                      ||++.+++.+++...
T Consensus        79 iG~~~i~l~~l~~~~   93 (125)
T cd04021          79 LGEASLDLSDILKNH   93 (125)
T ss_pred             EEEEEEEHHHhHhhc
Confidence            999999999997653

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.41  E-value=5.6e-13  Score=112.16  Aligned_cols=84  Identities=23%  Similarity=0.275  Sum_probs=71.0

Q ss_pred             CCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCceeEEEEEecccccccccc
Q 008910          465 LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSE  544 (549)
Q Consensus       465 ~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~  544 (549)
                      .+|.+||||++++++ ...++|++++++.||.|||.|.|.+.++....|.|+|||++..++++||++.+++.+++..+..
T Consensus         9 ~~G~~dPYv~v~v~~-~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNG-KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECC-EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence            468899999999975 3467899988999999999999999877677899999999988557999999999999876554


Q ss_pred             ceecC
Q 008910          545 ALRLF  549 (549)
Q Consensus       545 ~~~~~  549 (549)
                      ..+||
T Consensus        88 ~~~w~   92 (111)
T cd04052          88 GQQWF   92 (111)
T ss_pred             cceeE
Confidence            44553

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.38  E-value=2.6e-12  Score=102.36  Aligned_cols=83  Identities=45%  Similarity=0.760  Sum_probs=74.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc-eeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSE-TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY  527 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  527 (549)
                      |.|+|++|+||+..+..+..||||++.+++.. ..++|+++.++.+|.|||.|.|.+..+..+.|.|+|||++..++ ++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            68999999999998888899999999997633 46899999999999999999999887777789999999999885 59


Q ss_pred             eEEEE
Q 008910          528 LSRYF  532 (549)
Q Consensus       528 lG~~~  532 (549)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=1.8e-12  Score=131.40  Aligned_cols=120  Identities=31%  Similarity=0.611  Sum_probs=100.5

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC--
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI--  338 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~--  338 (549)
                      ...++++|+.|.+|..+|..|++||||...++   +.+.+|++|...+||+|||.|+|..++. ++.+++.|||.|..  
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlk  369 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLK  369 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHH
Confidence            47899999999999999999999999999998   7778999999999999999999999875 67999999998742  


Q ss_pred             ---------CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          339 ---------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       339 ---------~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                               ..|||+|+..|.++.|..  ..+.||.|.+..+   ....+|.|++.+...
T Consensus       370 sklrqkl~resddflgqtvievrtlsg--emdvwynlekrtd---ksavsgairlhisve  424 (1283)
T KOG1011|consen  370 SKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTD---KSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccc---hhhccceEEEEEEEE
Confidence                     468999999999987753  4589999987643   345677766665543

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=1e-11  Score=128.04  Aligned_cols=95  Identities=33%  Similarity=0.457  Sum_probs=82.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-ceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEECCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHDTF  523 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~~~  523 (549)
                      ...|.|+|++|++|+..+..|.+||||++++... ..+.+|++.++|+||.|||+|.|.+..  .....|.++|||.|++
T Consensus       166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drf  245 (421)
T KOG1028|consen  166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRF  245 (421)
T ss_pred             CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCc
Confidence            4679999999999999997778999999999643 468899999999999999999999753  3556899999999999


Q ss_pred             CC-ceeEEEEEeccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~  541 (549)
                      ++ |+||++.+++..+-..
T Consensus       246 sr~~~iGev~~~l~~~~~~  264 (421)
T KOG1028|consen  246 SRHDFIGEVILPLGEVDLL  264 (421)
T ss_pred             ccccEEEEEEecCcccccc
Confidence            87 6999999998887443

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.31  E-value=1e-12  Score=139.82  Aligned_cols=95  Identities=28%  Similarity=0.403  Sum_probs=84.7

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCC
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  524 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~  524 (549)
                      +....++|++.+|-+|.+.|.+|.+|||+++.+|++...-+...+.+|+||+|++.|++.+..+....++++|||+|..+
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~  689 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA  689 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence            34567789999999999999999999999999998666678888899999999999999999888888999999999988


Q ss_pred             C-ceeEEEEEeccccc
Q 008910          525 K-RYLSRYFQNRKTWL  539 (549)
Q Consensus       525 ~-d~lG~~~i~l~~l~  539 (549)
                      . +.||+..+++++-+
T Consensus       690 ~d~~iget~iDLEnR~  705 (1105)
T KOG1326|consen  690 QDEKIGETTIDLENRW  705 (1105)
T ss_pred             ccchhhceehhhhhcc
Confidence            5 69999999998743

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.31  E-value=3.8e-12  Score=148.59  Aligned_cols=96  Identities=24%  Similarity=0.417  Sum_probs=84.7

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCC-CCeEEEEEEECCCC
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL-HDMLIAEVWDHDTF  523 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-~~~l~i~V~d~~~~  523 (549)
                      ...|.|.|+|++|.||.  +..|.+||||++.+++ ..+.||++++++.||+|||.|+|.+.+|. +..|+|+|||+|.+
T Consensus      1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~-~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN-GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             hCCcceEEEEeeccccc--cccCCCCCeEEEEECC-CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            34799999999999998  4468899999999996 34669999999999999999999998874 45799999999999


Q ss_pred             CCceeEEEEEeccccccccc
Q 008910          524 GKRYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       524 ~~d~lG~~~i~l~~l~~~~~  543 (549)
                      ++|.+|.+.|++.+++.++.
T Consensus      2054 ~kd~~G~~~i~l~~vv~~~~ 2073 (2102)
T PLN03200       2054 GKSSLGKVTIQIDRVVMEGT 2073 (2102)
T ss_pred             CCCCCceEEEEHHHHhcCce
Confidence            88999999999999987553

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.30  E-value=1.6e-11  Score=105.04  Aligned_cols=95  Identities=21%  Similarity=0.366  Sum_probs=79.6

Q ss_pred             EEEEEEEcccccccC--CCCC--CCcEEEEEEeeCCCCeEEeeeeCCCCC--CeeccEEEEEEecC--------------
Q 008910          264 LEVKLVQAKGLTNKD--LIGK--SDPYAVLFVRPLPEKTKKSKTINNDLN--PIWNEHFEFIVEDE--------------  323 (549)
Q Consensus       264 L~V~v~~a~~L~~~d--~~g~--~dpyv~v~~~~~~~~~~kT~~~~~t~n--P~w~e~f~f~v~~~--------------  323 (549)
                      |+|.|.+|++++..+  ..|.  +||||+..+.+....+++|.+.++++|  |.||+.|.|.+..+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            799999999966443  3564  999999999865566789999999999  99999999887541              


Q ss_pred             ---------CCCEEEEEEEECCCCCCCceeEEEEEECcccCCCc
Q 008910          324 ---------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK  358 (549)
Q Consensus       324 ---------~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~  358 (549)
                               ....|.++|||+|.+++|++||+++++|..+..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     23579999999999999999999999999876543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.30  E-value=2.7e-11  Score=99.40  Aligned_cols=96  Identities=38%  Similarity=0.655  Sum_probs=82.0

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  343 (549)
                      |.|+|++|++|......+..+||+++.+.+......+|+++.++.||.|||+|.|.+.....+.|.++|||++..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            67999999999987765688999999998322257899999999999999999999987657799999999998777899


Q ss_pred             eEEEEEECcccCCCce
Q 008910          344 IGCAQVRLCELEPGKV  359 (549)
Q Consensus       344 lG~~~v~l~~l~~~~~  359 (549)
                      +|.+.+++.++..+..
T Consensus        82 ~G~~~~~l~~~~~~~~   97 (101)
T smart00239       82 IGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eEEEEEEHHHcccCcc
Confidence            9999999998866543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.28  E-value=3e-11  Score=98.94  Aligned_cols=101  Identities=39%  Similarity=0.725  Sum_probs=86.4

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  343 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  343 (549)
                      |.|.|++|++|......+..+|||.+.+..  ...++|+++.++.||.|++.|.|.+.......+.++||+.+..+.+.+
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   78 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF   78 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence            468999999998876677899999999972  377899999999999999999999986456789999999998877899


Q ss_pred             eEEEEEECcccC-CCceeEEEEEc
Q 008910          344 IGCAQVRLCELE-PGKVKDVWLKL  366 (549)
Q Consensus       344 lG~~~v~l~~l~-~~~~~~~w~~L  366 (549)
                      +|.+.+++.++. .......|++|
T Consensus        79 ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          79 LGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             eEEEEEeHHHhhhcCCcCcceecC
Confidence            999999999987 66666777654

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN03008 Phospholipase D delta

Probab=99.27  E-value=1.3e-11  Score=132.32  Aligned_cols=101  Identities=24%  Similarity=0.479  Sum_probs=83.2

Q ss_pred             ccccEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEEeCCce
Q 008910          445 IIRGVLSVTVILAENLPASDL------------------------------------------MGKADPYVVLTMKKSET  482 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~------------------------------------------~g~~dpyv~v~~~~~~~  482 (549)
                      ..-|.|.++|.+|++|+.++.                                          .+++||||+|.+++ .+
T Consensus        11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~-~r   89 (868)
T PLN03008         11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ-AT   89 (868)
T ss_pred             EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC-cc
Confidence            345889999999999985221                                          23679999999975 45


Q ss_pred             eeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCceeEEEEEeccccccccccceec
Q 008910          483 RNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       483 ~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      ..||++++++.||+|||+|.|.|.++. ..|+|+|||++.++.|+||++.|+++++.. |.....|
T Consensus        90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~-Ge~vd~W  153 (868)
T PLN03008         90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFGAQIIGTAKIPVRDIAS-GERISGW  153 (868)
T ss_pred             eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccCCceeEEEEEEHHHcCC-CCceEEE
Confidence            679999999999999999999998754 589999999999998999999999999755 3434444

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.26  E-value=3.1e-11  Score=102.68  Aligned_cols=83  Identities=23%  Similarity=0.378  Sum_probs=66.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCC--CCeEEEEEEECCCCCC-c
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHDTFGK-R  526 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d~~~~~~-d  526 (549)
                      |.|+|++|++|+..   |.+||||++++++ ...++|+++++ .||.|||+|.|.+....  ...|.+.+||.+..++ .
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~   76 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI   76 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECC-EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence            78999999999976   7899999999975 34578999888 99999999999997532  2467888898876654 4


Q ss_pred             eeEEEEEeccc
Q 008910          527 YLSRYFQNRKT  537 (549)
Q Consensus       527 ~lG~~~i~l~~  537 (549)
                      .+|.+.|+...
T Consensus        77 ~~g~v~l~~~~   87 (117)
T cd08383          77 VIGKVALSKLD   87 (117)
T ss_pred             EEEEEEecCcC
Confidence            77777665543

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.23  E-value=6.4e-11  Score=101.28  Aligned_cols=93  Identities=25%  Similarity=0.315  Sum_probs=77.8

Q ss_pred             EEEEEEEeecCCCCC--CCC--CCCcEEEEEEeCC-ceeeecccccCCCC--CccccEEEEEEecC--------------
Q 008910          450 LSVTVILAENLPASD--LMG--KADPYVVLTMKKS-ETRNKTRVVNDCLN--PIWNQTFDFVVEDG--------------  508 (549)
Q Consensus       450 L~v~v~~a~~L~~~~--~~g--~~dpyv~v~~~~~-~~~~kT~~~~~t~n--P~wne~f~f~v~~~--------------  508 (549)
                      |+|.|.+|++++..+  ..|  .+||||+..+.+. ..+++|.+.++++|  |.||+.|.|++..+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            789999999976543  356  4999999999764 67899999999999  99999999987642              


Q ss_pred             ---------CCCeEEEEEEECCCCCC-ceeEEEEEecccccccc
Q 008910          509 ---------LHDMLIAEVWDHDTFGK-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       509 ---------~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~  542 (549)
                               ....|.++|||+|.++. |+||.+++++..+....
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     23589999999999876 69999999999886654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.23  E-value=5e-11  Score=103.91  Aligned_cols=95  Identities=13%  Similarity=0.169  Sum_probs=77.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCC-C--
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT-F--  523 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~-~--  523 (549)
                      ...|.|.|.+|++|+.++     +|||.+.+++ ....||+++.++.||.|+|.|.|.+..+ -..+.|.||+.+. .  
T Consensus        10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~-~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~   82 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDK-TLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKK   82 (146)
T ss_pred             EEEEEEEEEEccCCCCcC-----CceEEEEECC-EEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccc
Confidence            467999999999998764     7999999997 3557999999999999999999986543 3579999976543 3  


Q ss_pred             --CCceeEEEEEeccccccccccceecC
Q 008910          524 --GKRYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       524 --~~d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                        ++++||.+.|+++++. .+.....||
T Consensus        83 ~~~~~~IG~V~Ip~~~l~-~~~~ve~Wf  109 (146)
T cd04013          83 KDKSQLIGTVNIPVTDVS-SRQFVEKWY  109 (146)
T ss_pred             ccCCcEEEEEEEEHHHhc-CCCcccEEE
Confidence              2369999999999987 566677765

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PLN02270 phospholipase D alpha

Probab=99.18  E-value=2.4e-10  Score=122.67  Aligned_cols=128  Identities=23%  Similarity=0.429  Sum_probs=105.7

Q ss_pred             eeEEEEEEEEcccccccC------------------CCCCCCcEEEEEEeeCCCCeEEeeeeCCC-CCCeeccEEEEEEe
Q 008910          261 VGTLEVKLVQAKGLTNKD------------------LIGKSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVE  321 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t-~nP~w~e~f~f~v~  321 (549)
                      .|.|.|+|.+|++|++++                  ..+.+|||+.+.+.  +.+..||+++.+. .||.|+|+|.+.+.
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEeec
Confidence            599999999999998632                  12467999999997  4678899999875 69999999999998


Q ss_pred             cCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeecccC
Q 008910          322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME  394 (549)
Q Consensus       322 ~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~  394 (549)
                      ... ..+.|.|.|.|.++ ..+||.+.+|..++..+...+.|+++.....  +..+...+|++++.|.|....
T Consensus        85 h~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~--~p~~~~~~~~~~~~f~~~~~~  153 (808)
T PLN02270         85 HMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDK--NPIHGGSKIHVKLQYFEVTKD  153 (808)
T ss_pred             cCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCC--CcCCCCCEEEEEEEEEEcccC
Confidence            775 48999999999886 4699999999999999999999999975431  222334599999999997654

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=99.17  E-value=1.9e-10  Score=92.44  Aligned_cols=85  Identities=22%  Similarity=0.362  Sum_probs=72.7

Q ss_pred             HHHHHHHhH-HH-HHHHHHHHHHhHHHHHhhc-CCCCcceEEEEEEecCCCCceeeeEEEEeC-CCCeEEEEEEEEEecC
Q 008910           75 NHHLEKLWP-YV-NEAASELIKSSVEPVLEQY-RPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELEMQWDAN  150 (549)
Q Consensus        75 N~~l~~~Wp-~~-~~~~~~~~~~~~~~~l~~~-~p~~~~~i~~~~~~lG~~~P~i~~i~~~~~-~~~~~~le~~~~~~~~  150 (549)
                      |.++.+++- +. ++.+.+.+++.++..|++. +|++++.|++++++||+.||.|+++++.+. .++++.+|+|+.|.|+
T Consensus         1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~   80 (91)
T PF10296_consen    1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG   80 (91)
T ss_pred             ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence            667777655 44 3688999999999999984 699999999999999999999999999865 4456999999999999


Q ss_pred             ceEEEEEEe
Q 008910          151 SSIILAIKT  159 (549)
Q Consensus       151 ~~i~l~~~~  159 (549)
                      ..+.++++.
T Consensus        81 ~~l~l~t~l   89 (91)
T PF10296_consen   81 FSLTLETKL   89 (91)
T ss_pred             eEEEEEEEE
Confidence            988888763

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>PLN02223 phosphoinositide phospholipase C

Probab=99.17  E-value=5.4e-10  Score=115.39  Aligned_cols=104  Identities=26%  Similarity=0.372  Sum_probs=85.0

Q ss_pred             eeEEEEEEEEcccccc-----cCCCCCCCcEEEEEEe--eCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEE
Q 008910          261 VGTLEVKLVQAKGLTN-----KDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY  333 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~  333 (549)
                      ...|.|+|++|.++..     .+.....||||++.+.  +.....++|.+..++.||+|||+|.|.+..++--.|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            3679999999998751     1223467999999996  33344677888889999999999999999887778999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      |+|....|+|+|++.+|+..|..|-   .+++|.
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~  518 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLY  518 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc---eeEecc
Confidence            9998888999999999999998875   445664

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=4.4e-11  Score=121.57  Aligned_cols=93  Identities=32%  Similarity=0.572  Sum_probs=82.7

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC-
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-  523 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~-  523 (549)
                      ..++.++++|.+|.+|..+|.+|++||||.+.+++  .+.+|+++...+||+|||.|.|.|++ ..+.|.+.|||+|.- 
T Consensus       292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~k--tkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dl  368 (1283)
T KOG1011|consen  292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK--TKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDL  368 (1283)
T ss_pred             ccceeeEEeeeecccceecccCCCCCCcEEEeecc--cchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccH
Confidence            46789999999999999999999999999999997  78899999999999999999999997 557899999998752 


Q ss_pred             -----------CCceeEEEEEecccccc
Q 008910          524 -----------GKRYLSRYFQNRKTWLH  540 (549)
Q Consensus       524 -----------~~d~lG~~~i~l~~l~~  540 (549)
                                 ++||+|+..|.+..+--
T Consensus       369 ksklrqkl~resddflgqtvievrtlsg  396 (1283)
T KOG1011|consen  369 KSKLRQKLTRESDDFLGQTVIEVRTLSG  396 (1283)
T ss_pred             HHHHHHHhhhcccccccceeEEEEeccc
Confidence                       24799999999887743

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.14  E-value=4.7e-10  Score=91.94  Aligned_cols=94  Identities=38%  Similarity=0.674  Sum_probs=79.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-ce
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RY  527 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  527 (549)
                      +.+.|++|++|......+..+|||++++... ...++|+++.++.||.|||.|.|.+..+....|.|+|||++..+. .+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            6789999999998876567899999999763 247889988888899999999999986656789999999987764 69


Q ss_pred             eEEEEEeccccccccc
Q 008910          528 LSRYFQNRKTWLHDGS  543 (549)
Q Consensus       528 lG~~~i~l~~l~~~~~  543 (549)
                      +|.+.+++.++.....
T Consensus        82 ~G~~~~~l~~~~~~~~   97 (101)
T smart00239       82 IGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eEEEEEEHHHcccCcc
Confidence            9999999999866543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.09  E-value=8.9e-10  Score=90.07  Aligned_cols=97  Identities=46%  Similarity=0.728  Sum_probs=80.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-cee
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-RYL  528 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l  528 (549)
                      |.|.|++|+++......+..+|||.+.+.+ ...++|++..++.||.||+.|.|.+.......+.|+||+.+..+. .++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i   79 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL   79 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence            468999999998876677899999999876 467789998899999999999999986456789999999998764 699


Q ss_pred             EEEEEecccccccccccee
Q 008910          529 SRYFQNRKTWLHDGSEALR  547 (549)
Q Consensus       529 G~~~i~l~~l~~~~~~~~~  547 (549)
                      |++.+++.++.........
T Consensus        80 g~~~~~l~~l~~~~~~~~~   98 (102)
T cd00030          80 GEVEIPLSELLDSGKEGEL   98 (102)
T ss_pred             EEEEEeHHHhhhcCCcCcc
Confidence            9999999998733333333

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02952 phosphoinositide phospholipase C

Probab=99.09  E-value=1.5e-09  Score=114.56  Aligned_cols=105  Identities=25%  Similarity=0.393  Sum_probs=86.2

Q ss_pred             eeEEEEEEEEccccccc------CCCCCCCcEEEEEEe--eCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 008910          261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  332 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v  332 (549)
                      ...|.|+|++|.+++..      +.....||||++.+-  +....+++|+++.++.||.|||+|.|.+..++...+.|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999887521      112345999999986  3334567899999999999999999999887766899999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      ||+|..+.++++|++.+|+..|..|-   .|++|..
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~  581 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD  581 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence            99998888999999999999999885   4788853

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.08  E-value=1.7e-10  Score=123.21  Aligned_cols=276  Identities=21%  Similarity=0.237  Sum_probs=159.5

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCe--EEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  339 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~--~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~  339 (549)
                      -..+|.|++|-+|.+.|.+|.+|||+++.++   ++.  -+...+.+|+||+|.+.|++....+....+.++|||+|..+
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~  689 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA  689 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence            3567999999999999999999999999998   333  55677899999999999999988887779999999999999


Q ss_pred             CCceeEEEEEECccc-CC------Cc-------eeEEEEEccccccc-----cCCCc----eeeEEEEEEEEeecccCCc
Q 008910          340 SSELIGCAQVRLCEL-EP------GK-------VKDVWLKLVKDLDV-----QRDTK----YRGQVHLELLYCPFGMENV  396 (549)
Q Consensus       340 ~d~~lG~~~v~l~~l-~~------~~-------~~~~w~~L~~~~~~-----~~~~~----~~G~l~l~l~~~p~~~~~~  396 (549)
                      +|+.+|+..++|+.= ..      +.       ....|..-......     +..+.    ..++. ..+.|.......+
T Consensus       690 ~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d  768 (1105)
T KOG1326|consen  690 QDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYD  768 (1105)
T ss_pred             ccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhc
Confidence            999999999998752 10      00       11233322211110     00000    01111 1222211100000


Q ss_pred             ---ccCCCCCCCCcch---HHHHhhcc----cccccCCCCCchhhhhhhhhhhhccc----------------cccccEE
Q 008910          397 ---FTNPFAPNFSMTS---LEKVLTNG----EKALKSGANGTEAIELEKDASQKRRE----------------VIIRGVL  450 (549)
Q Consensus       397 ---~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~g~L  450 (549)
                         ...+..+.+....   ....+...    +|...........+..++...+.|.+                .+...-+
T Consensus       769 ~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~l  848 (1105)
T KOG1326|consen  769 EKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYEL  848 (1105)
T ss_pred             ccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeE
Confidence               0000001111000   00000000    11110000000111111111111110                1345678


Q ss_pred             EEEEEEeecCCCCCCCC----CCCcEEEEEEe-CCceeeecccccCCC--CCccccEEEEEEec----------------
Q 008910          451 SVTVILAENLPASDLMG----KADPYVVLTMK-KSETRNKTRVVNDCL--NPIWNQTFDFVVED----------------  507 (549)
Q Consensus       451 ~v~v~~a~~L~~~~~~g----~~dpyv~v~~~-~~~~~~kT~~~~~t~--nP~wne~f~f~v~~----------------  507 (549)
                      +|.|..-.++...+.++    ++|-||+-.+- ..+.+++|.+.+.++  .-.||-.|.|....                
T Consensus       849 rviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~w  928 (1105)
T KOG1326|consen  849 RVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSW  928 (1105)
T ss_pred             EEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhcc
Confidence            88888887776655332    47899987764 445678888887654  45566666665320                


Q ss_pred             ----C---CCCeEEEEEEECCCCCC-ceeEEEEEeccccccc
Q 008910          508 ----G---LHDMLIAEVWDHDTFGK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       508 ----~---~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~  541 (549)
                          .   ....|.|+|||.|.++. ||||..+++|++...-
T Consensus       929 s~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~p  970 (1105)
T KOG1326|consen  929 SLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAP  970 (1105)
T ss_pred             ccccccccCchheEEEecccCccChhhhhhheeechhhCcCC
Confidence                0   11269999999999987 5999999999988653

>PLN02223 phosphoinositide phospholipase C

Probab=99.04  E-value=1.3e-09  Score=112.58  Aligned_cols=102  Identities=21%  Similarity=0.329  Sum_probs=81.9

Q ss_pred             ccEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEE
Q 008910          447 RGVLSVTVILAENLPAS-----DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW  518 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~-----~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~  518 (549)
                      ...|.|+|++|++++..     +....+||||+|.+.+   ...+++|.+..++.||+|||+|+|.+..|.-..|.|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            46799999999998521     1234579999999954   234567877778899999999999999888888999999


Q ss_pred             ECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910          519 DHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       519 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      |+|..++ +++|++.+++..+ ..|...++|+
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~L-r~GyR~VpL~  518 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSEL-IEGIRAVPLY  518 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHh-cCCceeEecc
Confidence            9998765 7999999999998 6666666653

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.02  E-value=6.4e-11  Score=122.02  Aligned_cols=128  Identities=34%  Similarity=0.595  Sum_probs=103.9

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC----------------------------CeEEeeeeCCCCCCe
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----------------------------KTKKSKTINNDLNPI  311 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----------------------------~~~kT~~~~~t~nP~  311 (549)
                      |.--|.|.+.+|++|.++|.+|.+|||+...+.+...                            -.+-|+++++|+||+
T Consensus       112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk  191 (1103)
T KOG1328|consen  112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK  191 (1103)
T ss_pred             CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence            4455678889999999999999999999987753210                            024588899999999


Q ss_pred             eccEEEEEEecCCCCEEEEEEEECCCC---------------------------------CC---CceeEEEEEECcccC
Q 008910          312 WNEHFEFIVEDESTQHLVVRIYDDEGI---------------------------------QS---SELIGCAQVRLCELE  355 (549)
Q Consensus       312 w~e~f~f~v~~~~~~~L~i~v~d~~~~---------------------------------~~---d~~lG~~~v~l~~l~  355 (549)
                      |+|.|.|.+.+..++.+.+.+||+|.-                                 +.   |||+|++.+|+.++.
T Consensus       192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP  271 (1103)
T KOG1328|consen  192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP  271 (1103)
T ss_pred             hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence            999999999999999999999998821                                 22   799999999999986


Q ss_pred             CCceeEEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910          356 PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       356 ~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  391 (549)
                      .. ..+.||.|++..   ..++..|.+++.+.....
T Consensus       272 ~~-Gld~WFkLepRS---~~S~VqG~~~LklwLsT~  303 (1103)
T KOG1328|consen  272 PD-GLDQWFKLEPRS---DKSKVQGQVKLKLWLSTK  303 (1103)
T ss_pred             cc-hHHHHhccCccc---ccccccceEEEEEEEeee
Confidence            54 468999998753   356788999999877543

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.97  E-value=7.1e-09  Score=109.33  Aligned_cols=104  Identities=21%  Similarity=0.279  Sum_probs=84.3

Q ss_pred             eeEEEEEEEEccccccc------CCCCCCCcEEEEEEee--CCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 008910          261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  332 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v  332 (549)
                      ..+|.|+|+.+.++...      +.....||||++.+-.  ....+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            36899999999987421      2223579999999862  233457888889999999999999999888777899999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      +|+|...+|+|+|+..+|+..|..|-.   .++|.
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~  579 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLF  579 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccc---eEecc
Confidence            999988889999999999999988743   34654

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.94  E-value=7.9e-09  Score=105.83  Aligned_cols=183  Identities=21%  Similarity=0.322  Sum_probs=130.5

Q ss_pred             CeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC----CCCceeEEEEEECcccCCCceeEEEEEccccccc
Q 008910          297 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV  372 (549)
Q Consensus       297 ~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~----~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~  372 (549)
                      +..+|.++.+.+||.|.+.|.+.......|.+++.++|.+..    ...+|+|++...+.++........-+.+.+    
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~----  116 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP----  116 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc----
Confidence            346899999999999999998888777788999999997753    456899999999998765433222222211    


Q ss_pred             cCCCceeeEEEEEEEEeecccCCcccCCCCCCCCcchHHHHhhcccccccCCCCCchhhhhhhhhhhhccccccccEEEE
Q 008910          373 QRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSV  452 (549)
Q Consensus       373 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v  452 (549)
                       ......|+|.+...=.                                                       ........
T Consensus       117 -~~~~~~g~iti~aee~-------------------------------------------------------~~~~~~~~  140 (529)
T KOG1327|consen  117 -GKNAGSGTITISAEED-------------------------------------------------------ESDNDVVQ  140 (529)
T ss_pred             -CccCCcccEEEEeecc-------------------------------------------------------cccCceee
Confidence             1223456666654321                                                       00112333


Q ss_pred             EEEEeecCCCCCCCCCCCcEEEEEEe--C--CceeeecccccCCCCCccccEEEEEEe----cCCCCeEEEEEEECCCCC
Q 008910          453 TVILAENLPASDLMGKADPYVVLTMK--K--SETRNKTRVVNDCLNPIWNQTFDFVVE----DGLHDMLIAEVWDHDTFG  524 (549)
Q Consensus       453 ~v~~a~~L~~~~~~g~~dpyv~v~~~--~--~~~~~kT~~~~~t~nP~wne~f~f~v~----~~~~~~l~i~V~d~~~~~  524 (549)
                      -..+|++|..++..+++|||..++-.  .  ....++|.+++++++|.|.+ |.....    ...+..+.+.+||++..+
T Consensus       141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~  219 (529)
T KOG1327|consen  141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG  219 (529)
T ss_pred             eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence            44669999999999999999998752  2  22368999999999999984 333322    123467999999999988


Q ss_pred             C-ceeEEEEEecccccc
Q 008910          525 K-RYLSRYFQNRKTWLH  540 (549)
Q Consensus       525 ~-d~lG~~~i~l~~l~~  540 (549)
                      + ++||.+..++.++..
T Consensus       220 ~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  220 KHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CcCceeEecccHHHhcc
Confidence            7 799999998888754

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.93  E-value=1.7e-08  Score=106.33  Aligned_cols=105  Identities=23%  Similarity=0.308  Sum_probs=84.3

Q ss_pred             eeEEEEEEEEccccc----cc--CCCCCCCcEEEEEEe--eCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 008910          261 VGTLEVKLVQAKGLT----NK--DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  332 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v  332 (549)
                      ...|.|+|+.+.++.    ..  +.....||||++.+.  +....+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            467999999998753    11  122457999999986  3334568899999999999999999999888777899999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      +|+|....|+++|++.+|+..|..|-.   .++|..
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~  563 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS  563 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence            999987889999999999999988743   346543

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.92  E-value=3.2e-09  Score=85.03  Aligned_cols=87  Identities=17%  Similarity=0.257  Sum_probs=71.8

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCc
Q 008910          450 LSVTVILAENLPASD---LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKR  526 (549)
Q Consensus       450 L~v~v~~a~~L~~~~---~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d  526 (549)
                      |.|+|.+|+|+.-.+   ..+.+||||.+++++ ..+.||++   +.||.|||.|.|.+.  ....+.+.|||+..-..-
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~   74 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-VERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPV   74 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECC-EEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeec
Confidence            578999999998776   567789999999987 34788885   589999999999995  456899999998543234


Q ss_pred             eeEEEEEecccccccc
Q 008910          527 YLSRYFQNRKTWLHDG  542 (549)
Q Consensus       527 ~lG~~~i~l~~l~~~~  542 (549)
                      -||...+.++++.++.
T Consensus        75 Pi~llW~~~sdi~Ee~   90 (109)
T cd08689          75 PVGLLWLRLSDIAEEI   90 (109)
T ss_pred             ceeeehhhHHHHHHHH
Confidence            7999999999997654

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02228 Phosphoinositide phospholipase C

Probab=98.91  E-value=2.4e-08  Score=104.88  Aligned_cols=124  Identities=19%  Similarity=0.272  Sum_probs=94.1

Q ss_pred             eeEEEEEEEEcccccc---c---CCCCCCCcEEEEEEe--eCCCCeEEeeeeCCCCCCee-ccEEEEEEecCCCCEEEEE
Q 008910          261 VGTLEVKLVQAKGLTN---K---DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR  331 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~w-~e~f~f~v~~~~~~~L~i~  331 (549)
                      ...|.|+|++|.+|+.   .   +.....||||++.+.  +.....++|+++.++.||.| ||+|.|.+..++-..|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3579999999998731   1   122347999999986  33345689999988999999 9999999988877789999


Q ss_pred             EEECCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910          332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       332 v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      |+|+|..+.|+++|++.+|+..|..|-.   .++|....   ...-..++|.+.+.+.+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~---G~~l~~atLfv~~~~~~  562 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA---GKAYKNTRLLVSFALDP  562 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC---CCCCCCeEEEEEEEEcC
Confidence            9999987889999999999999987743   34664321   12223467888887764

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.88  E-value=1.3e-08  Score=107.35  Aligned_cols=121  Identities=23%  Similarity=0.373  Sum_probs=91.9

Q ss_pred             EEEEEEEEcccccccC----CCCCCCcEEEEEEe--eCCCCeEEee-eeCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 008910          263 TLEVKLVQAKGLTNKD----LIGKSDPYAVLFVR--PLPEKTKKSK-TINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d----~~g~~dpyv~v~~~--~~~~~~~kT~-~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  335 (549)
                      +|.|+|+++.++...-    ....+||||.+.+.  |......+|+ +..++-||.|+|+|.|.+..|+-..|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            6999999999766432    12457999999985  3334467888 568899999999999999999888899999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      |..++|+|+|+..+|+..|..|-.+   ++|....   ...-....|.+.+.+.
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~---G~~~~~asLfv~i~~~  744 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSRE---GEALSSASLFVRIAIV  744 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee---eeecCCC---CccccceeEEEEEEEe
Confidence            9999999999999999999887543   3443221   1222345666666653

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.85  E-value=1.5e-08  Score=106.93  Aligned_cols=102  Identities=25%  Similarity=0.361  Sum_probs=82.2

Q ss_pred             ccEEEEEEEEeecCCCC------CCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEE
Q 008910          447 RGVLSVTVILAENLPAS------DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV  517 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~------~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V  517 (549)
                      ...|.|+|+.+.+++..      +.....||||+|.+.+   ...+++|++..++.||+|||+|+|.+..|.-..|.|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999987532      1223479999999853   23467888888899999999999999988778999999


Q ss_pred             EECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910          518 WDHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       518 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +|++..++ ||+|+..|++..+ +.|...++|+
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~L-r~GyR~V~L~  579 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEI-RQGIHAVPLF  579 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHh-hCccceEecc
Confidence            99998655 7999999999998 6666666653

>PLN02952 phosphoinositide phospholipase C

Probab=98.83  E-value=2.2e-08  Score=105.91  Aligned_cols=101  Identities=21%  Similarity=0.298  Sum_probs=80.4

Q ss_pred             ccEEEEEEEEeecCCCCC------CCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEE
Q 008910          447 RGVLSVTVILAENLPASD------LMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV  517 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~------~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V  517 (549)
                      ...|.|+|+.|++++...      .....||||+|.+.+   ...+++|+++.++.||+|||+|.|.+..+.-..+.|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            467999999999975321      122359999999854   23567899999889999999999999887777899999


Q ss_pred             EECCCCCC-ceeEEEEEeccccccccccceec
Q 008910          518 WDHDTFGK-RYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       518 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      ||+|..++ |++|++.+++..+ ..|...++|
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~L-r~GyR~VpL  579 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSEL-RPGIRSVPL  579 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHh-cCCceeEeC
Confidence            99998765 7999999999998 445555544

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.83  E-value=1.4e-08  Score=102.47  Aligned_cols=124  Identities=25%  Similarity=0.427  Sum_probs=102.8

Q ss_pred             eEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeec-cEEEEEEecC--CCCEEEEEEEECCC
Q 008910          262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN-EHFEFIVEDE--STQHLVVRIYDDEG  337 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~-e~f~f~v~~~--~~~~L~i~v~d~~~  337 (549)
                      |.|.|+|..|++|+-+|.. ...|.||.+.+.   ...+||.+-.+++||.|| +.|.|.+.+.  ....|.+.+.|+|.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            7889999999999999865 467999999998   788999999999999999 5689998764  55689999999999


Q ss_pred             CCCCceeEEEEEECcccC----------CCceeEEEEEccccccccCCCceeeEEEEEEEEeeccc
Q 008910          338 IQSSELIGCAQVRLCELE----------PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM  393 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~----------~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~  393 (549)
                      .+.+|-||.+.++++.|.          .+.....|+++...     -...+|+|.+-+..--|.+
T Consensus        80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-----ihgirgeinvivkvdlfnd  140 (1169)
T KOG1031|consen   80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-----IHGIRGEINVIVKVDLFND  140 (1169)
T ss_pred             cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-----cccccceeEEEEEEeehhh
Confidence            999999999999998873          23456789998743     3457899988776654444

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.81  E-value=1.5e-08  Score=81.19  Aligned_cols=84  Identities=24%  Similarity=0.442  Sum_probs=68.5

Q ss_pred             EEEEEEEcccccccC---CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910          264 LEVKLVQAKGLTNKD---LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (549)
Q Consensus       264 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  340 (549)
                      |.|+|..|+|+...+   ..+.+||||.++++  ..++.||++   +.||.|||+|.|.+.  ....+.+.|||... ..
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~   72 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ   72 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence            579999999999877   56889999999997  344777775   589999999999994  35699999999965 34


Q ss_pred             CceeEEEEEECcccC
Q 008910          341 SELIGCAQVRLCELE  355 (549)
Q Consensus       341 d~~lG~~~v~l~~l~  355 (549)
                      .--+|..-+.++++.
T Consensus        73 ~~Pi~llW~~~sdi~   87 (109)
T cd08689          73 PVPVGLLWLRLSDIA   87 (109)
T ss_pred             ecceeeehhhHHHHH
Confidence            557888888888774

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.79  E-value=3.4e-08  Score=104.09  Aligned_cols=102  Identities=22%  Similarity=0.282  Sum_probs=81.7

Q ss_pred             ccEEEEEEEEeecCCC--C----CCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEE
Q 008910          447 RGVLSVTVILAENLPA--S----DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV  517 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~--~----~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V  517 (549)
                      ...|.|+|+.+++++.  .    +.....||||+|.+.+   ...+++|+++.++.||+|||.|+|.+..|.-..|.|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            4679999999988532  1    1223479999999953   24567899999889999999999999888778999999


Q ss_pred             EECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910          518 WDHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       518 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +|+|..+. +++|+..++++.+ ..|...++|+
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~L-r~GyR~V~L~  562 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWEL-SQGIRAFPLH  562 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhh-hCccceEEcc
Confidence            99987664 7999999999998 6666666653

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.75  E-value=2.6e-08  Score=105.07  Aligned_cols=100  Identities=24%  Similarity=0.370  Sum_probs=82.0

Q ss_pred             EEEEEEEEeecCCCCCC----CCCCCcEEEEEEeC---Cceeeecccc-cCCCCCccccEEEEEEecCCCCeEEEEEEEC
Q 008910          449 VLSVTVILAENLPASDL----MGKADPYVVLTMKK---SETRNKTRVV-NDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH  520 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~----~g~~dpyv~v~~~~---~~~~~kT~~~-~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~  520 (549)
                      .|.|.|+++.+++....    ...+||||.|.+.+   ...+.+|+++ .++-||.|+|+|+|.+..|.-.-|.+.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            79999999997765432    23479999999854   3457788844 4788999999999999999888999999999


Q ss_pred             CCCCC-ceeEEEEEeccccccccccceecC
Q 008910          521 DTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +..++ ||+|+..++++++ ..|...++|+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L-~~GyRhVpL~  725 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSEL-RQGYRHVPLL  725 (746)
T ss_pred             CCCCcccccceeeccHHHh-hCceeeeeec
Confidence            99885 7999999999998 6666666654

>PLN02228 Phosphoinositide phospholipase C

Probab=98.69  E-value=9.5e-08  Score=100.51  Aligned_cols=102  Identities=22%  Similarity=0.277  Sum_probs=81.6

Q ss_pred             ccEEEEEEEEeecCCC----C--CCCCCCCcEEEEEEeC---CceeeecccccCCCCCcc-ccEEEEEEecCCCCeEEEE
Q 008910          447 RGVLSVTVILAENLPA----S--DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE  516 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~----~--~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~l~i~  516 (549)
                      ...|.|+|++|++|+.    .  +.....||||+|.+.+   ...+++|+++.++.||.| ||.|+|.+..+.-..|.|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            4579999999998742    1  1123479999999853   235678998888899999 9999999998877899999


Q ss_pred             EEECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910          517 VWDHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       517 V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      |+|++..+. +++|++.|+++.+ ..|...++|+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~L-r~GYR~VpL~  542 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPEL-KSGVRAVRLH  542 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHh-hCCeeEEEcc
Confidence            999987655 6999999999998 6777666664

>PLN02270 phospholipase D alpha

Probab=98.66  E-value=9.8e-08  Score=102.95  Aligned_cols=100  Identities=21%  Similarity=0.368  Sum_probs=82.8

Q ss_pred             cccEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEeCCceeeecccccCC-CCCccccEEEEEEe
Q 008910          446 IRGVLSVTVILAENLPASD------------------LMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVE  506 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~------------------~~g~~dpyv~v~~~~~~~~~kT~~~~~t-~nP~wne~f~f~v~  506 (549)
                      .-|.|.++|.+|++|+..+                  ..+.+||||.|.+++ .+..||+++.+. .||.|||.|...|.
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-ARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-cEEEEEeecCCCCCCCccccceEEeec
Confidence            3489999999999998631                  124679999999986 567899999874 69999999999998


Q ss_pred             cCCCCeEEEEEEECCCCCCceeEEEEEeccccccccccceec
Q 008910          507 DGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       507 ~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      ... ..++|.|+|.+.++..+||++.|++.+++.. ...-+|
T Consensus        85 h~~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g-~~i~~~  124 (808)
T PLN02270         85 HMA-SNIIFTVKDDNPIGATLIGRAYIPVEEILDG-EEVDRW  124 (808)
T ss_pred             cCc-ceEEEEEecCCccCceEEEEEEEEHHHhcCC-CccccE
Confidence            755 5799999999999999999999999998663 345444

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.64  E-value=1.2e-07  Score=99.45  Aligned_cols=90  Identities=29%  Similarity=0.417  Sum_probs=75.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC----CceeeecccccCCCCCccc-cEEEEEEecCCCCeEEEEEEECCC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK----SETRNKTRVVNDCLNPIWN-QTFDFVVEDGLHDMLIAEVWDHDT  522 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~----~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~~~~~l~i~V~d~~~  522 (549)
                      -.|.|.|+.|++|+... -|...|||.|.+-+    ....++|.++.+++||+|| |.|+|.+.+|.-..|.+.|+|.|.
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            57899999999999543 45567999999843    1234555566688999999 999999999988999999999999


Q ss_pred             CCC-ceeEEEEEecccc
Q 008910          523 FGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l  538 (549)
                      +++ .|||++..++..+
T Consensus      1144 fs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred             cCCcceeeeeecchhhh
Confidence            998 6999999999877

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.63  E-value=1.6e-07  Score=98.61  Aligned_cols=125  Identities=19%  Similarity=0.268  Sum_probs=92.0

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEe--eCCCCe-EEeeeeCCCCCCeec-cEEEEEEecCCCCEEEEEEEECCC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKT-KKSKTINNDLNPIWN-EHFEFIVEDESTQHLVVRIYDDEG  337 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~-~kT~~~~~t~nP~w~-e~f~f~v~~~~~~~L~i~v~d~~~  337 (549)
                      -.|.|.|+.|++|+... .|...|||.+.+-  +-...+ ++|.++.+++||+|| |.|+|.+.+|+--.|+|.|+|.|-
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            56889999999999543 3566799999985  222334 455567899999999 999999999988889999999999


Q ss_pred             CCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeeccc
Q 008910          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM  393 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~  393 (549)
                      ++...|||++..|+..+..|-.   -++|...   ....-.-..|.+.+...|...
T Consensus      1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~---ySEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNG---YSEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred             cCCcceeeeeecchhhhhccce---eeecccC---chhhhhhhhheeeeEeccccC
Confidence            9888999999999999876632   2344211   111122355666666666443

>PLN02352 phospholipase D epsilon

Probab=98.62  E-value=3.2e-07  Score=98.84  Aligned_cols=121  Identities=14%  Similarity=0.323  Sum_probs=92.3

Q ss_pred             eeEEEEEEEEccccccc----CCC-CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 008910          261 VGTLEVKLVQAKGLTNK----DLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  335 (549)
                      .|.|.++|.+|+-+...    +.. ...|||+.+.+.  +.+..||   .+..||.|+|+|.+.+.......+.|.|.| 
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-   82 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-   82 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-
Confidence            59999999999843321    111 123999999997  4556777   556699999999999988764579999988 


Q ss_pred             CCCCCCceeEEEEEECcccCCCce-eEEEEEccccccccCCCceeeEEEEEEEEeecccC
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME  394 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~  394 (549)
                          ...+||.+.+|..++..+.. .+.|+++......  ... ..+|++++.|.|....
T Consensus        83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~--p~~-~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         83 ----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGK--PNP-ELKLRFMLWFRPAELE  135 (758)
T ss_pred             ----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCC--CCC-CCEEEEEEEEEEhhhC
Confidence                25799999999999988866 8999999764321  111 2599999999998764

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.61  E-value=1.2e-08  Score=105.55  Aligned_cols=94  Identities=32%  Similarity=0.492  Sum_probs=80.2

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC----CCeEEeeeeCCCCCCeeccEEEEEEecC----CCCEEEEEEE
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIY  333 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~w~e~f~f~v~~~----~~~~L~i~v~  333 (549)
                      ..|.|.|+.|+++.+-|.+|.+||||++.+.|..    ....+|+++.+|+||+|+|+|+|.|...    +.-.+.|.|.
T Consensus       947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen  947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred             cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEee
Confidence            3456667889999999999999999999998532    2368899999999999999999999643    2447899999


Q ss_pred             ECCCCCCCceeEEEEEECcccC
Q 008910          334 DDEGIQSSELIGCAQVRLCELE  355 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~  355 (549)
                      |+|-...+||-|++.+.|.++.
T Consensus      1027 DHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             ccceecccccchHHHHhhCCCC
Confidence            9999999999999999998774

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.58  E-value=8.4e-08  Score=99.65  Aligned_cols=120  Identities=22%  Similarity=0.304  Sum_probs=91.1

Q ss_pred             EEcccccccCCCCCCCcEEEEEEe-eCCCCeEEeeeeCCCCCCeeccEEEEEEecC---------------CCCEEEEEE
Q 008910          269 VQAKGLTNKDLIGKSDPYAVLFVR-PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQHLVVRI  332 (549)
Q Consensus       269 ~~a~~L~~~d~~g~~dpyv~v~~~-~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---------------~~~~L~i~v  332 (549)
                      ++++++.+.+ ++.+|||+++... +...+..+|+++++|.+|.|+|.|.|.+...               ....+++.+
T Consensus       138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l  216 (800)
T KOG2059|consen  138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL  216 (800)
T ss_pred             hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence            3445555444 4569999999986 2333457899999999999999999998643               234688999


Q ss_pred             EE-CCCCCCCceeEEEEEECcccCCCceeEEEEEcccccccc--CCCceeeEEEEEEEEe
Q 008910          333 YD-DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ--RDTKYRGQVHLELLYC  389 (549)
Q Consensus       333 ~d-~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~--~~~~~~G~l~l~l~~~  389 (549)
                      |+ .+....++|+|++.+++..+........||.|++.....  .++..-|.+++.++|.
T Consensus       217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~  276 (800)
T KOG2059|consen  217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT  276 (800)
T ss_pred             ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence            99 555566999999999999888777788999998765432  2345568999999885

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.41  E-value=1.9e-07  Score=101.69  Aligned_cols=107  Identities=26%  Similarity=0.413  Sum_probs=89.9

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCCCCeeccEEEEE---EecCCCCEEEEEEEEC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI---VEDESTQHLVVRIYDD  335 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~w~e~f~f~---v~~~~~~~L~i~v~d~  335 (549)
                      .|+|.|-|..|++|.-..-...+||||+.++.|++.+  +.||+++++|.||.|||...+.   .....+..|.+.||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            5899999999999965554567999999999976544  5789999999999999987655   2223456899999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      +....+.++|.+.++|.++...++...||.|.
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence            99999999999999999987777777999984

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.39  E-value=3.7e-07  Score=99.51  Aligned_cols=102  Identities=21%  Similarity=0.198  Sum_probs=80.8

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEE---EecCCCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV---VEDGLHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~---v~~~~~~~l~i~V~d~  520 (549)
                      .|.|.|.|+-|++|+.......+||||+.++..   +..+.||+++.+|+||.|||...+.   ........|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            488999999999997766666799999999943   3467899999999999999998876   2223456899999998


Q ss_pred             CCCCC-ceeEEEEEeccccccccccceecC
Q 008910          521 DTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +.... .++|.+.|+|.++- ...+.+.||
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~-l~kE~~~Wy 1631 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVD-LLKESVGWY 1631 (1639)
T ss_pred             cceeeeeeeeeeecchhhcc-hhhhhccee
Confidence            88766 59999999999873 223344554

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.32  E-value=9.2e-07  Score=89.68  Aligned_cols=91  Identities=30%  Similarity=0.444  Sum_probs=79.4

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCceeeecccccCCCCCccc-cEEEEEEecC--CCCeEEEEEEECCCC
Q 008910          448 GVLSVTVILAENLPASDLM-GKADPYVVLTMKKSETRNKTRVVNDCLNPIWN-QTFDFVVEDG--LHDMLIAEVWDHDTF  523 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~-g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~--~~~~l~i~V~d~~~~  523 (549)
                      |.|-|+|..|++||.+|.. ...|.||+++++.  ..+||.+..+++||.|| +-|.|.+.+.  .++.|.|.++|+|..
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n--~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty   80 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN--TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY   80 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecc--cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence            7889999999999998864 4579999999987  88999999999999999 4588988753  566899999999998


Q ss_pred             CC-ceeEEEEEecccccc
Q 008910          524 GK-RYLSRYFQNRKTWLH  540 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~  540 (549)
                      +. |-||.+.|+++-+.-
T Consensus        81 sandaigkv~i~idpl~~   98 (1169)
T KOG1031|consen   81 SANDAIGKVNIDIDPLCL   98 (1169)
T ss_pred             ccccccceeeeccChHHH
Confidence            76 899999999998854

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.27  E-value=3.3e-06  Score=86.92  Aligned_cols=172  Identities=25%  Similarity=0.394  Sum_probs=108.2

Q ss_pred             EEEEEEEeecCCCCCCceeeEEEEecccceeeEEEEEcccCcccCcchHH-HHHHHHHHHhhccccccceeeccCC--CC
Q 008910          175 TGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSD-SIEATIHDAIEDSITWPVRKIVPIL--PG  251 (549)
Q Consensus       175 ~g~~rv~l~pl~~~~P~~~~~~~~f~~~p~l~f~~~~~g~~~~~iP~l~~-~~~~~i~~~i~~~~~~P~~~~ip~~--~~  251 (549)
                      .|+..++.+-+.|.|-....+.+.|++.+.+.|.+...+...   +.+.. .+.+...+.+.++.. -.....++.  ++
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~---~~l~~~dflg~~~c~l~~ivs-~~~~~~~l~~~~~  117 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRT---PDLSSADFLGTAECTLSQIVS-SSGLTGPLLLKPG  117 (529)
T ss_pred             ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCcc---CCcchhcccceeeeehhhhhh-hhhhhhhhhcccC
Confidence            356667776677777777778999999999999998775321   11111 111111111111110 000011100  00


Q ss_pred             CCcccccCceeEEEE-------------EEEEcccccccCCCCCCCcEEEEEEee-C--CCCeEEeeeeCCCCCCeeccE
Q 008910          252 DYSELELKPVGTLEV-------------KLVQAKGLTNKDLIGKSDPYAVLFVRP-L--PEKTKKSKTINNDLNPIWNEH  315 (549)
Q Consensus       252 ~~~~~~~~~~g~L~V-------------~v~~a~~L~~~d~~g~~dpyv~v~~~~-~--~~~~~kT~~~~~t~nP~w~e~  315 (549)
                           .....|.+.+             -..+|++|.++|..+++|||..++-.- .  ....++|+++++++||.|.+ 
T Consensus       118 -----~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-  191 (529)
T KOG1327|consen  118 -----KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-  191 (529)
T ss_pred             -----ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-
Confidence                 0001122222             224588999999999999999888652 1  12358999999999999988 


Q ss_pred             EEEEEecC----CCCEEEEEEEECCCCCCCceeEEEEEECcccCC
Q 008910          316 FEFIVEDE----STQHLVVRIYDDEGIQSSELIGCAQVRLCELEP  356 (549)
Q Consensus       316 f~f~v~~~----~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~  356 (549)
                      |.......    ....+.+.+||++..++++++|.+..++.++..
T Consensus       192 ~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  192 FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence            55554432    235788999999998889999999999988864

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.17  E-value=2.8e-06  Score=70.41  Aligned_cols=100  Identities=21%  Similarity=0.295  Sum_probs=76.7

Q ss_pred             EEEEEEEeecCCCCC-----------C--CCCCCcEEEEEEe--CCceeeecccccCCCCCccccEEEEEEe--------
Q 008910          450 LSVTVILAENLPASD-----------L--MGKADPYVVLTMK--KSETRNKTRVVNDCLNPIWNQTFDFVVE--------  506 (549)
Q Consensus       450 L~v~v~~a~~L~~~~-----------~--~g~~dpyv~v~~~--~~~~~~kT~~~~~t~nP~wne~f~f~v~--------  506 (549)
                      |.|.|++|.+|....           .  .--.|+||++.+.  .+.+..+|+++.++-.|.|+..++|+|+        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            457788888886421           0  1115899999863  3456789999999999999999999986        


Q ss_pred             c-------CCCCeEEEEEEECCCCC----------Cc-eeEEEEEeccccccccccceecC
Q 008910          507 D-------GLHDMLIAEVWDHDTFG----------KR-YLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       507 ~-------~~~~~l~i~V~d~~~~~----------~d-~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      .       .....+.++||+....+          +| .||.+.|++.+++.+.+....||
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~  141 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWY  141 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccc
Confidence            1       13347999999865321          35 79999999999999999999987

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=4.8e-06  Score=79.68  Aligned_cols=104  Identities=24%  Similarity=0.347  Sum_probs=81.8

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEEEC
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDD  335 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~d~  335 (549)
                      ....|.|+++.|..|..+|.+|.+|||+..++.++-+.  +++|.+.+++.||+||++|.|.+..  .....+.+.|||+
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            45778999999999999999999999999998754443  5778889999999999999988753  3456799999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEE
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLK  365 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~  365 (549)
                      +..+..+++|-+...+  ...+....+|..
T Consensus       311 ~~G~s~d~~GG~~~g~--~rr~~v~~h~gr  338 (362)
T KOG1013|consen  311 DIGKSNDSIGGSMLGG--YRRGEVHKHWGR  338 (362)
T ss_pred             CCCcCccCCCcccccc--cccchhhcCccc
Confidence            9887888998765443  234444455543

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.00  E-value=5.1e-06  Score=63.77  Aligned_cols=98  Identities=20%  Similarity=0.219  Sum_probs=70.8

Q ss_pred             EEEEEEcccccccCCCC-CCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEEEECCCCCCC
Q 008910          265 EVKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDDEGIQSS  341 (549)
Q Consensus       265 ~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~d~~~~~~d  341 (549)
                      .|+|+.|++|.-....| .+.-|++--+.-.....+||++.++..||+|+|+|.|.+..  ...-.|-|.|+.  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            58899999997543322 34456665554223446889999999999999999998753  345578899998  44678


Q ss_pred             ceeEEEEEECcccCCCceeEEEEE
Q 008910          342 ELIGCAQVRLCELEPGKVKDVWLK  365 (549)
Q Consensus       342 ~~lG~~~v~l~~l~~~~~~~~w~~  365 (549)
                      +.||.|.+.++++-+. ..++|..
T Consensus        80 e~iG~~sL~l~s~gee-E~~HW~e  102 (103)
T cd08684          80 RTIGECSLSLRTLSTQ-ETDHWLE  102 (103)
T ss_pred             ceeeEEEeecccCCHH-Hhhhhhc
Confidence            9999999999886443 3456654

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=97.97  E-value=3.3e-05  Score=80.23  Aligned_cols=227  Identities=15%  Similarity=0.244  Sum_probs=153.8

Q ss_pred             CCCCceecCCC-------cchHHHHHHHHHHhHH------HHHHHHHHHHHhHHHHHhhcCCC-CcceEEEEEEecCCCC
Q 008910           58 FYPSWVVFSHR-------QKLTWLNHHLEKLWPY------VNEAASELIKSSVEPVLEQYRPF-ILSSLKFSKFTLGTVA  123 (549)
Q Consensus        58 ~~p~w~~~~~~-------E~~~WlN~~l~~~Wp~------~~~~~~~~~~~~~~~~l~~~~p~-~~~~i~~~~~~lG~~~  123 (549)
                      ..|.|+.....       -.|-.+|.++..++.-      +..++-+.+...+...+....-+ .+..+.+.++-+|.+.
T Consensus        81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f  160 (1051)
T KOG3532|consen   81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF  160 (1051)
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence            46778765332       2355566777766652      22233344444455555544333 7899999999999999


Q ss_pred             ceeeeEEEEeCC-------------------------CCeEEEEEEEEEecCceEEEEEEeeeceeeeEEEEEEEEEEEE
Q 008910          124 PQFTGVSIIEDG-------------------------GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF  178 (549)
Q Consensus       124 P~i~~i~~~~~~-------------------------~~~~~le~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~~  178 (549)
                      |.+++.+++.-+                         -..+.+=+|+.|.|+.--++++....+..-.+.|+..+++|.+
T Consensus       161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~  240 (1051)
T KOG3532|consen  161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV  240 (1051)
T ss_pred             ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence            999999998621                         1234566889999987666666666666667889999999999


Q ss_pred             EEEeecCCCCCCceeeEEEEecccceeeEEEEE--cccCcccCcchHHHHHHHHHHHhhccccccceeec--cCCC----
Q 008910          179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKV--VGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIV--PILP----  250 (549)
Q Consensus       179 rv~l~pl~~~~P~~~~~~~~f~~~p~l~f~~~~--~g~~~~~iP~l~~~~~~~i~~~i~~~~~~P~~~~i--p~~~----  250 (549)
                      |+.+.    .-|+- .++++|...|.+...++.  +|..+-.  .+.+.+.+.++.++.+..+||++..-  |.-.    
T Consensus       241 r~~~~----r~py~-hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~  313 (1051)
T KOG3532|consen  241 RVILS----RQPYH-HWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF  313 (1051)
T ss_pred             eEEEE----eccce-eeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence            99886    55654 489999999976554432  3322211  13456788889999999999997542  2211    


Q ss_pred             ----CCCcccccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEee
Q 008910          251 ----GDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP  293 (549)
Q Consensus       251 ----~~~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~  293 (549)
                          ...+.+...+.|.+.|++.++..|..  ..++..-||.+.+.+
T Consensus       314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~  358 (1051)
T KOG3532|consen  314 QASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES  358 (1051)
T ss_pred             ccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence                11122334578999999999988754  457788899888763

>PLN02964 phosphatidylserine decarboxylase

Probab=97.92  E-value=1.7e-05  Score=85.13  Aligned_cols=87  Identities=17%  Similarity=0.371  Sum_probs=73.4

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEE-EEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAV-LFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~-v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  338 (549)
                      -.|+..+++++|+    ++   ..|+|.. ++++   .+++||.+.++|+||+||+...|.+.........+.|||.+.+
T Consensus        52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g---~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (644)
T PLN02964         52 FSGIALLTLVGAE----MK---FKDKWLACVSFG---EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL  121 (644)
T ss_pred             ccCeEEEEeehhh----hc---cCCcEEEEEEec---ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence            4699999999998    43   3588754 4455   8899999999999999999999999866555679999999999


Q ss_pred             CCCceeEEEEEECcccCC
Q 008910          339 QSSELIGCAQVRLCELEP  356 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~  356 (549)
                      +.++++|.|++++.++..
T Consensus       122 s~n~lv~~~e~~~t~f~~  139 (644)
T PLN02964        122 SKNTLVGYCELDLFDFVT  139 (644)
T ss_pred             CHHHhhhheeecHhhccH
Confidence            999999999998877643

>PLN02352 phospholipase D epsilon

Probab=97.87  E-value=5e-05  Score=82.23  Aligned_cols=96  Identities=19%  Similarity=0.317  Sum_probs=71.6

Q ss_pred             cccEEEEEEEEeecCCCC----CCC-CCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEEC
Q 008910          446 IRGVLSVTVILAENLPAS----DLM-GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH  520 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~----~~~-g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~  520 (549)
                      .-|.|.++|.+|+-+...    ... ...||||.|.+++ .+..||   .+..||.|||.|...|.......++|.|+| 
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-
Confidence            458999999999843221    111 1139999999986 456677   456699999999999987665579999998 


Q ss_pred             CCCCCceeEEEEEeccccccccccceecC
Q 008910          521 DTFGKRYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       521 ~~~~~d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                         +..+||++.|++.+++..+....+||
T Consensus        83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~  108 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTEASFINGFF  108 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCCCcccceEE
Confidence               35699999999999987644455543

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.73  E-value=0.0034  Score=62.67  Aligned_cols=258  Identities=12%  Similarity=0.116  Sum_probs=148.4

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec-------CCCCEEEEEEEECC
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-------ESTQHLVVRIYDDE  336 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~-------~~~~~L~i~v~d~~  336 (549)
                      +.|.|++|++.+...   ...-.+..++.   +....|..+..+..|.||.+..+.+..       .....+++++|..|
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~   75 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD   75 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence            578999999998652   23345666665   778889988999999999988888742       24568999999988


Q ss_pred             -CCCCCceeEEEEEECccc---CCC--ceeEEEEEccccccccCCCceeeEEEEEEEEeecccCCccc--------CCCC
Q 008910          337 -GIQSSELIGCAQVRLCEL---EPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFT--------NPFA  402 (549)
Q Consensus       337 -~~~~d~~lG~~~v~l~~l---~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~--------~~~~  402 (549)
                       ..+..+.+|.+.++|+.+   ..+  .....|++|.....  +-.+..-+|.+.+........+...        .|..
T Consensus        76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~  153 (340)
T PF12416_consen   76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPR  153 (340)
T ss_pred             CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc--ccccCCccEEEEEEEeccccccCCccccccccCCCcc
Confidence             556778999999999998   555  56789999975421  1223345677777765433321100        0111


Q ss_pred             CCCCcchHHHHhhcccc-cccCCCCCchhhhhhhhhhhhccccccccEEEEEEEEeecCCCCC----C--CCCCCcEEEE
Q 008910          403 PNFSMTSLEKVLTNGEK-ALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASD----L--MGKADPYVVL  475 (549)
Q Consensus       403 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~----~--~g~~dpyv~v  475 (549)
                      ++. .......+....- .......|..       .-.....-...-.|.|++..|+||...-    .  .+...-|...
T Consensus       154 ~~~-~~~~~~~~~~~~l~~~l~~~eg~l-------QIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Y  225 (340)
T PF12416_consen  154 QGH-VPPPNSLLSPATLIPVLLEDEGLL-------QIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYY  225 (340)
T ss_pred             cCC-CcccccccCccceeEEEccCCceE-------eeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEE
Confidence            110 0000000000000 0000000000       0000000134578899999999987551    1  1123334444


Q ss_pred             EEeCCceeeecccccCCCCCccc-cEEE-EEEecC---------CCCeEEEEEEECCCCCCceeEEEEEeccccccccc
Q 008910          476 TMKKSETRNKTRVVNDCLNPIWN-QTFD-FVVEDG---------LHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       476 ~~~~~~~~~kT~~~~~t~nP~wn-e~f~-f~v~~~---------~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~  543 (549)
                      .+-+  ....|...+...+|.|. +.-. +.++..         ....|.|.++..+    ..||.+.+++..++...+
T Consensus       226 sllG--n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g~----~~Lg~~~v~l~~Ll~~~~  298 (340)
T PF12416_consen  226 SLLG--NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCGN----QSLGSTSVPLQPLLPKDS  298 (340)
T ss_pred             EecC--cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeCC----cEEEEEEEEhhhccCCCc
Confidence            4544  23344555566778765 2333 555421         2246788877643    379999999999976543

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.53  E-value=0.00019  Score=59.68  Aligned_cols=103  Identities=17%  Similarity=0.374  Sum_probs=73.2

Q ss_pred             EEEEEEEcccccccC---------C--C--CCCCcEEEEEEee-CCCCeEEeeeeCCCCCCeeccEEEEEEe--------
Q 008910          264 LEVKLVQAKGLTNKD---------L--I--GKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVE--------  321 (549)
Q Consensus       264 L~V~v~~a~~L~~~d---------~--~--g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~w~e~f~f~v~--------  321 (549)
                      |.|.|++|.+|....         +  .  -.-++|+++.+.- .+++..+|+++.++-.|.|+.+++|...        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            457788888876421         0  0  1247899998642 2355688999999999999999999864        


Q ss_pred             c-------CCCCEEEEEEEECCCC----------CCCceeEEEEEECcccCC-CceeEEEEEc
Q 008910          322 D-------ESTQHLVVRIYDDEGI----------QSSELIGCAQVRLCELEP-GKVKDVWLKL  366 (549)
Q Consensus       322 ~-------~~~~~L~i~v~d~~~~----------~~d~~lG~~~v~l~~l~~-~~~~~~w~~L  366 (549)
                      .       .+...+.++||+....          .+|-+||.+.||+.+|.. ......|+++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1       1345789999997532          346689999999999753 3456778763

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=97.38  E-value=0.00022  Score=76.75  Aligned_cols=89  Identities=13%  Similarity=0.255  Sum_probs=72.1

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEE-EEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVV-LTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF  523 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~-v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~  523 (549)
                      .-.|+..+++++|+    ++   ..|+|.. +++|.  +.+||.+.++|.||+||+...|.+........++.|||.+.+
T Consensus        51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~--~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK---FKDKWLACVSFGE--QTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL  121 (644)
T ss_pred             cccCeEEEEeehhh----hc---cCCcEEEEEEecc--eeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence            45799999999997    22   2488665 55565  899999999999999999999998755445579999999998


Q ss_pred             CC-ceeEEEEEecccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~  542 (549)
                      +. +++|.|.+++.++..+.
T Consensus       122 s~n~lv~~~e~~~t~f~~kq  141 (644)
T PLN02964        122 SKNTLVGYCELDLFDFVTQE  141 (644)
T ss_pred             CHHHhhhheeecHhhccHHH
Confidence            87 69999999888876654

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.38  E-value=0.00041  Score=53.51  Aligned_cols=85  Identities=15%  Similarity=0.167  Sum_probs=61.7

Q ss_pred             EEEEEeecCCCCCCCCC-CCcEEEEEEe-CCceeeecccccCCCCCccccEEEEEEe--cCCCCeEEEEEEECCCCC-Cc
Q 008910          452 VTVILAENLPASDLMGK-ADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFG-KR  526 (549)
Q Consensus       452 v~v~~a~~L~~~~~~g~-~dpyv~v~~~-~~~~~~kT~~~~~t~nP~wne~f~f~v~--~~~~~~l~i~V~d~~~~~-~d  526 (549)
                      +++.+|++|.-...-|. +.-|++--+. .+....||.......||+|+|+|.|.+.  ....-.|.++|+.  ... +.
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe   80 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR   80 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence            67889999976544332 3346553332 2345788998889999999999999976  3344578999987  333 46


Q ss_pred             eeEEEEEecccc
Q 008910          527 YLSRYFQNRKTW  538 (549)
Q Consensus       527 ~lG~~~i~l~~l  538 (549)
                      .||.|.++++++
T Consensus        81 ~iG~~sL~l~s~   92 (103)
T cd08684          81 TIGECSLSLRTL   92 (103)
T ss_pred             eeeEEEeecccC
Confidence            999999999976

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.00016  Score=70.61  Aligned_cols=104  Identities=18%  Similarity=0.260  Sum_probs=78.7

Q ss_pred             ccccEEEEEEEEeecCCCCCCCC-CCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEE-
Q 008910          445 IIRGVLSVTVILAENLPASDLMG-KADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD-  519 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g-~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d-  519 (549)
                      ...|.+.|.|++|++|..+...+ .++|||+|++-.   ...+.+|+...+|++|.|.+...|.-. +....|.+.||- 
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence            45789999999999998776433 589999999832   224678888899999988887777765 456789999994 


Q ss_pred             CCCCCC-ceeEEEEEeccccccccccceecC
Q 008910          520 HDTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +..... .|+|.+++-++++--...-.+.||
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwy  375 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWY  375 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeee
Confidence            444444 499999999998855554555554

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.05  E-value=0.00044  Score=68.26  Aligned_cols=124  Identities=17%  Similarity=0.181  Sum_probs=89.9

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEe--eCCCCeEEeeeeCCCCCCeeccEEEEEEecC-----------CCCE
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-----------STQH  327 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~-----------~~~~  327 (549)
                      .-.|.+.|+++.+++........|-|+++.+.  .+..++.+|.++++|.+|.|+|.|.+.+...           ....
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            34566777777776643322345778888764  2345678899999999999999999988652           1235


Q ss_pred             EEEEEEECCCC-CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          328 LVVRIYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       328 L~i~v~d~~~~-~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      +.|++|+...+ .+|.++|.|.+.|.-|...-.....++|..     ......|.|.+.+...
T Consensus       446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-----GRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-----GRKAVGGKLEVKVRIR  503 (523)
T ss_pred             eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-----cccccCCeeEEEEEEe
Confidence            89999998764 568899999999988876655666677742     2345678998888774

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.99  E-value=0.00048  Score=67.44  Aligned_cols=110  Identities=24%  Similarity=0.379  Sum_probs=84.6

Q ss_pred             CceeEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEE-
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD-  334 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d-  334 (549)
                      ...|.|.|.|++|++|..+... ..++|||++++.+.+.  -+.+|+...+|.+|.+.+...|.-. +....|.+.||. 
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence            4679999999999999876533 3689999999984332  2467888888998888776666543 345689999984 


Q ss_pred             CCCCCCCceeEEEEEECcccCCCc-eeEEEEEcccc
Q 008910          335 DEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLVKD  369 (549)
Q Consensus       335 ~~~~~~d~~lG~~~v~l~~l~~~~-~~~~w~~L~~~  369 (549)
                      +.+..++.|+|.+.+-+.+|.... ....||+|...
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence            566667889999999999987655 67899998753

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.63  E-value=0.029  Score=49.20  Aligned_cols=129  Identities=15%  Similarity=0.153  Sum_probs=86.6

Q ss_pred             ceeEEEEEEEEcccccccCC--CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCC-------------
Q 008910          260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-------------  324 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~-------------  324 (549)
                      ..-.|.++|..++-....-.  .+..+.-..+.+. .++|+++|+.+..+.+|.|+|.|-|.+....             
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            34678899988875442211  1344444444443 3489999999999999999999999986432             


Q ss_pred             CCEEEEEEEECCCCCCCceeEEEEEECcccCCCcee--EEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910          325 TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK--DVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       325 ~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~--~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  391 (549)
                      .+.+.+.|.--|..+...++|.-.+.-+.+......  ..-..|....  ...+...|-|.+++...|.
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~--~e~kv~~GiL~l~lELlP~  152 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG--PESKVPVGILDLRLELLPN  152 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC--CCCccceeEEEEEEEeecC
Confidence            346778888777766668999998888876544333  3333332211  1123578999999999874

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.53  E-value=0.02  Score=51.80  Aligned_cols=100  Identities=19%  Similarity=0.213  Sum_probs=68.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce----eeecccccCCCCCccccEEEEEEe--c-CCCCeEEEEEEEC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDH  520 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~l~i~V~d~  520 (549)
                      ..+.|+|++++++...  ....+-||++.+-++.+    ...|+.+..+.++.|||.++|++.  + |.+..|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            4589999999999862  23356677776522112    234555444567999999999864  2 4667999999986


Q ss_pred             CCCC----------------C-ceeEEEEEeccc---cccccccceecC
Q 008910          521 DTFG----------------K-RYLSRYFQNRKT---WLHDGSEALRLF  549 (549)
Q Consensus       521 ~~~~----------------~-d~lG~~~i~l~~---l~~~~~~~~~~~  549 (549)
                      ....                . ..||.+.+.+-+   .+..|.+.+.+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~lW  134 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYMW  134 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEec
Confidence            4321                1 379999888766   466777777665

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.38  E-value=0.028  Score=49.96  Aligned_cols=98  Identities=21%  Similarity=0.191  Sum_probs=67.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce----eeecccccCCCCCccccEEEEEEe--c-CCCCeEEEEEEEC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDH  520 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~l~i~V~d~  520 (549)
                      ..+.|+|++++++...+   .+|-||++.+-++.+    ...|..+.. .++.|||-.+|++.  + |....|.|+||+.
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            46889999999988643   357888887632222    123443333 67999999999875  2 4667999999986


Q ss_pred             CCCC---C--ceeEEEEEeccc---cccccccceecC
Q 008910          521 DTFG---K--RYLSRYFQNRKT---WLHDGSEALRLF  549 (549)
Q Consensus       521 ~~~~---~--d~lG~~~i~l~~---l~~~~~~~~~~~  549 (549)
                      ....   +  -.+|.+.+.+-+   .+..|.+.+.+|
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW  120 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLW  120 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEE
Confidence            5421   2  269999998876   366777776654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.91  E-value=0.063  Score=47.84  Aligned_cols=101  Identities=19%  Similarity=0.169  Sum_probs=67.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--eCC--ceeeecccccCCCCCccccEEEEEEe--c-CCCCeEEEEEEEC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTM--KKS--ETRNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDH  520 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~--~~~--~~~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~l~i~V~d~  520 (549)
                      ..+.|.+....+....+ ....+-||.+.+  |++  .....|.......++.|||..+|++.  + |.+..|.|+||+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            45778888888876521 223456777765  321  11234443333468999999999864  2 4667999999997


Q ss_pred             CCCC--C-ceeEEEEEecccc---ccccccceecC
Q 008910          521 DTFG--K-RYLSRYFQNRKTW---LHDGSEALRLF  549 (549)
Q Consensus       521 ~~~~--~-d~lG~~~i~l~~l---~~~~~~~~~~~  549 (549)
                      ...+  + ..||.+.+++-+.   +..|.+.+.+|
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW  121 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLW  121 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcccCcEecCCEEEecc
Confidence            7654  2 4899999988764   66777777665

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.67  E-value=0.73  Score=40.17  Aligned_cols=122  Identities=13%  Similarity=0.200  Sum_probs=75.9

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeee-CCCCCCeeccEEEEEEec--------CCCCEEEEE
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIVED--------ESTQHLVVR  331 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~-~~t~nP~w~e~f~f~v~~--------~~~~~L~i~  331 (549)
                      .-.+.|++++..+++.    ....-|++...+.......+|+.. ..+-.-.|||.|.+.+.-        .....+.|.
T Consensus         6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            3467888899988875    122234444333111102344332 345567999999887641        123468899


Q ss_pred             EEECCCCCCCceeEEEEEECcccCCC--ceeEEEEEccccccccCCCceeeEEEEEEEEeecc
Q 008910          332 IYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  392 (549)
Q Consensus       332 v~d~~~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~  392 (549)
                      |+.....++...+|.+.++|.+....  .....-+.|.+      .......|++++.+.+..
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~------~~~~~a~L~isi~~~~~~  138 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK------CKKSNATLSISISLSELR  138 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc------CCCCCcEEEEEEEEEECc
Confidence            99885433446899999999998763  44555666642      235567889998887643

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.54  E-value=0.065  Score=47.75  Aligned_cols=82  Identities=17%  Similarity=0.194  Sum_probs=57.3

Q ss_pred             CCCcEEEEEEeCCce----eeecccccCCCCCccccEEEEEEe---cCCCCeEEEEEEECCCCCC-ceeEEEEEeccc--
Q 008910          468 KADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-RYLSRYFQNRKT--  537 (549)
Q Consensus       468 ~~dpyv~v~~~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~--  537 (549)
                      .+|-||.+.+-.+.+    ...|..+.-+..+.|||-.+|++.   -|.+..|.|+||+....++ ..+|.+.+++-+  
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~~  108 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNKD  108 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECCC
Confidence            467788877632222    234555555667889999999975   2466799999999876554 489999998876  


Q ss_pred             -cccccccceecC
Q 008910          538 -WLHDGSEALRLF  549 (549)
Q Consensus       538 -l~~~~~~~~~~~  549 (549)
                       .+..|.+.+.+|
T Consensus       109 g~Lr~G~~~l~lw  121 (159)
T cd08397         109 GTLRRGRQKLRVW  121 (159)
T ss_pred             CcEecCCEEEEEE
Confidence             366777766654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=95.52  E-value=0.0078  Score=59.76  Aligned_cols=93  Identities=15%  Similarity=0.183  Sum_probs=72.0

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCceeeecccccCCCCCccccEEEEEEecCC-----------CC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDGL-----------HD  511 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-----------~~  511 (549)
                      ....|.+.|.++.+++...+.-..|.|+++.+-   ....+.+|.+++.|.+|.|+|.|...+....           ..
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            345678888899988876544445789998873   2346789999999999999999999987521           12


Q ss_pred             eEEEEEEECCCCCC-c-eeEEEEEecccc
Q 008910          512 MLIAEVWDHDTFGK-R-YLSRYFQNRKTW  538 (549)
Q Consensus       512 ~l~i~V~d~~~~~~-d-~lG~~~i~l~~l  538 (549)
                      .+.|+|+++..+.+ | ++|.+.+.+.-+
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~L  473 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEIL  473 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehhh
Confidence            58999999987654 5 999999998766

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.48  E-value=0.073  Score=48.20  Aligned_cols=103  Identities=18%  Similarity=0.211  Sum_probs=70.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce----eeeccccc----CCCCCccccEEEEEEe---cCCCCeEEE
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVN----DCLNPIWNQTFDFVVE---DGLHDMLIA  515 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~~~~----~t~nP~wne~f~f~v~---~~~~~~l~i  515 (549)
                      ...+.|+|.++.+++........|-|+.+.+-.+.+    ...|+...    ....+.|||-.+|.+.   -|.+..|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            356899999999999876544567888887632222    12333211    1235779999999874   246679999


Q ss_pred             EEEECCCCC---------C-ceeEEEEEecccc---ccccccceecC
Q 008910          516 EVWDHDTFG---------K-RYLSRYFQNRKTW---LHDGSEALRLF  549 (549)
Q Consensus       516 ~V~d~~~~~---------~-d~lG~~~i~l~~l---~~~~~~~~~~~  549 (549)
                      .+|+....+         + ..||.+.+.+-+.   +..|.+.+.+|
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW  133 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLW  133 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEec
Confidence            999866543         2 4899999988764   66777777665

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.34  E-value=0.093  Score=46.05  Aligned_cols=99  Identities=17%  Similarity=0.188  Sum_probs=74.6

Q ss_pred             cccEEEEEEEEeecCCCCCCC--CCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCC-------------C
Q 008910          446 IRGVLSVTVILAENLPASDLM--GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL-------------H  510 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~--g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-------------~  510 (549)
                      ....|++.|..++-+...-..  +..+.-..+.+.-..++++|+.+..+++|.|+|.|-|.+....             .
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~   86 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS   86 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence            457899999998876543221  4455556666544459999999999999999999999987431             3


Q ss_pred             CeEEEEEEECCCCCC-ceeEEEEEecccccccccc
Q 008910          511 DMLIAEVWDHDTFGK-RYLSRYFQNRKTWLHDGSE  544 (549)
Q Consensus       511 ~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~  544 (549)
                      +.|++-|...+..++ .++|...++...++..+..
T Consensus        87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~  121 (156)
T PF15627_consen   87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG  121 (156)
T ss_pred             CceEEEEEEecCCCceEeeeeceehHHHHhccCCC
Confidence            478888888777665 5999999999988877654

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.02  E-value=0.18  Score=45.71  Aligned_cols=101  Identities=13%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce---eeecccccCCCCCccccEEEEEEe--c-CCCCeEEEEEEECC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET---RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHD  521 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~---~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~l~i~V~d~~  521 (549)
                      ..++|+|+++.+ +..+......-||++.+-.+..   ..+|.....+.++.|||-++|++.  + |....|.|.||+..
T Consensus        10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            457788888873 3332222233566665422112   234555555678999999999875  2 36679999999852


Q ss_pred             CC---------------CC-c-eeEEEEEeccc---cccccccceecC
Q 008910          522 TF---------------GK-R-YLSRYFQNRKT---WLHDGSEALRLF  549 (549)
Q Consensus       522 ~~---------------~~-d-~lG~~~i~l~~---l~~~~~~~~~~~  549 (549)
                      ..               ++ + .||.+.+.+-+   .+.+|.+.+.+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W  136 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVLHMW  136 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEEEEe
Confidence            21               11 2 68889887766   366777776654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=94.86  E-value=0.061  Score=58.50  Aligned_cols=90  Identities=26%  Similarity=0.478  Sum_probs=67.6

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC----CeEEeeee-CCCCCCeeccE-EEEE-EecCCCCEEEEEEE
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----KTKKSKTI-NNDLNPIWNEH-FEFI-VEDESTQHLVVRIY  333 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----~~~kT~~~-~~t~nP~w~e~-f~f~-v~~~~~~~L~i~v~  333 (549)
                      .+.+.|+|+++.-|..++.    ..||.+.+-..+.    +.++|+++ .++.||+|+|+ |.|. |.-+.-..|+|.||
T Consensus       702 A~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            5788999999999987653    3799998853222    35778876 67899999974 6665 22334457999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGK  358 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~  358 (549)
                      +...    .+||+=.+|+..|..|-
T Consensus       778 eEgg----K~ig~RIlpvd~l~~GY  798 (1189)
T KOG1265|consen  778 EEGG----KFIGQRILPVDGLNAGY  798 (1189)
T ss_pred             ccCC----ceeeeeccchhcccCcc
Confidence            9753    59999999999988764

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=94.81  E-value=0.059  Score=58.64  Aligned_cols=87  Identities=24%  Similarity=0.352  Sum_probs=65.4

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-----Cceeeeccccc-CCCCCcccc-EEEEE-EecCCCCeEEEE
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK-----SETRNKTRVVN-DCLNPIWNQ-TFDFV-VEDGLHDMLIAE  516 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~~kT~~~~-~t~nP~wne-~f~f~-v~~~~~~~l~i~  516 (549)
                      ...+.+.|+|+++.=|..++.    ..||.|.+-+     ..+.++|+++. ++.||+|+| .|.|. |--|.-..|.|.
T Consensus       700 vIA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia  775 (1189)
T KOG1265|consen  700 VIAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA  775 (1189)
T ss_pred             eEEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence            457889999999998876543    4799999843     22467888877 568999996 47776 333455689999


Q ss_pred             EEECCCCCCceeEEEEEecccc
Q 008910          517 VWDHDTFGKRYLSRYFQNRKTW  538 (549)
Q Consensus       517 V~d~~~~~~d~lG~~~i~l~~l  538 (549)
                      ||++..   .+||+=.++++.+
T Consensus       776 vyeEgg---K~ig~RIlpvd~l  794 (1189)
T KOG1265|consen  776 VYEEGG---KFIGQRILPVDGL  794 (1189)
T ss_pred             eeccCC---ceeeeeccchhcc
Confidence            998764   4899888888876

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.42  E-value=1.1  Score=39.93  Aligned_cols=88  Identities=18%  Similarity=0.276  Sum_probs=59.5

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC---eEEeeeeCCCCCCeeccEEEEEEe--cC-CCCEEEEEEEEC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD  335 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~~t~nP~w~e~f~f~v~--~~-~~~~L~i~v~d~  335 (549)
                      ..++|+|++++++.-.+   .+|-|+.+.+-.++..   ...|+.+.. .++.|||...|.+.  +. ....|.|.+|+.
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            46789999999887543   4688888876532211   123443333 67999999888764  32 345899999997


Q ss_pred             CCCC----CCceeEEEEEECcc
Q 008910          336 EGIQ----SSELIGCAQVRLCE  353 (549)
Q Consensus       336 ~~~~----~d~~lG~~~v~l~~  353 (549)
                      ....    ....+|.+.++|-+
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEEC
Confidence            6421    22469999999865

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.71  E-value=0.43  Score=43.21  Aligned_cols=90  Identities=19%  Similarity=0.273  Sum_probs=57.7

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEEC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDD  335 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~  335 (549)
                      ..++|+|+.+.++.-.+  ...+-|+.+.+-.++.   ....|+.+..+.++.|||...|++.  + +....|.|.+|+.
T Consensus         8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            46789999999988522  3456677765542211   1234555554567999999888764  3 2445899999997


Q ss_pred             CCCC----------------CCceeEEEEEECcc
Q 008910          336 EGIQ----------------SSELIGCAQVRLCE  353 (549)
Q Consensus       336 ~~~~----------------~d~~lG~~~v~l~~  353 (549)
                      ....                .+..||.+.++|-+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEc
Confidence            5422                13467777776643

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.37  E-value=0.59  Score=41.56  Aligned_cols=91  Identities=19%  Similarity=0.225  Sum_probs=58.7

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEEC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDD  335 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~  335 (549)
                      ..++|++....++...+ ....+-|+.+.+-.++.   ....|.......++.|||...|.+.  + +....|.|.+|+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            35677788777765411 23456677776642221   1233443333468999999888754  3 2345899999998


Q ss_pred             CCCC--CCceeEEEEEECcc
Q 008910          336 EGIQ--SSELIGCAQVRLCE  353 (549)
Q Consensus       336 ~~~~--~d~~lG~~~v~l~~  353 (549)
                      +..+  .+..||.+.++|-+
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd  106 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFD  106 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEc
Confidence            7543  46799999999865

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=92.80  E-value=0.26  Score=47.51  Aligned_cols=80  Identities=18%  Similarity=0.169  Sum_probs=55.9

Q ss_pred             ceeEEEEEEEEcccccccCC--CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 008910          260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~  337 (549)
                      ..|+|.+++..+++|.-...  .-.-+-||++...  .....+|.+.....-=.|.|+|+.++.+.  ..+.+-||.++.
T Consensus        49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~p  124 (442)
T KOG1452|consen   49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWPP  124 (442)
T ss_pred             ccceEEEEEecccccccChhccCceeeeeeeeeec--ccCccccccccCCCCccchhhceeecccc--eeeeEEEeecCc
Confidence            56999999999999975332  3346889998875  22234454444444458999999888743  468888999887


Q ss_pred             CCCCce
Q 008910          338 IQSSEL  343 (549)
Q Consensus       338 ~~~d~~  343 (549)
                      -.++++
T Consensus       125 q~RHKL  130 (442)
T KOG1452|consen  125 QRRHKL  130 (442)
T ss_pred             hhhccc
Confidence            656654

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=92.40  E-value=1.5  Score=34.55  Aligned_cols=86  Identities=20%  Similarity=0.253  Sum_probs=57.7

Q ss_pred             CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCcee
Q 008910          281 GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK  360 (549)
Q Consensus       281 g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~  360 (549)
                      |.++-.+.+.+.  ...+.+|.... -.+..|++.|.+.+..  ...|+|.||=+|-   ..+-|...+.|++...    
T Consensus         7 ~~~eV~avLklD--n~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----   74 (98)
T cd08687           7 GCSEVSAVLKLD--NTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----   74 (98)
T ss_pred             cccceEEEEEEc--CeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----
Confidence            346777888876  34566676543 3578999999999863  5689999998764   3466777777776322    


Q ss_pred             EEEEEccccccccCCCceeeEEEEEEEE
Q 008910          361 DVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       361 ~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      ..-.+          -.+.|.+..+++|
T Consensus        75 ~~~~~----------lepqg~l~~ev~f   92 (98)
T cd08687          75 EVQLD----------MEPQLCLVAELTF   92 (98)
T ss_pred             cceec----------cccccEEEEEEEe
Confidence            11122          2456888887777

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=92.27  E-value=0.83  Score=45.86  Aligned_cols=95  Identities=9%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEec-------CCCCeEEEEEEECCC
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-------GLHDMLIAEVWDHDT  522 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-------~~~~~l~i~V~d~~~  522 (549)
                      +.|.|.+|+|++...   ...-.+..++++  ....|..+..+..|.||....+.+..       ..+..|++++|--+.
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng--~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~   76 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNG--ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG   76 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCC--ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence            678999999998763   234577888887  67778888899999999999998862       345689999998873


Q ss_pred             -CC-CceeEEEEEecccc---ccc-cccceecC
Q 008910          523 -FG-KRYLSRYFQNRKTW---LHD-GSEALRLF  549 (549)
Q Consensus       523 -~~-~d~lG~~~i~l~~l---~~~-~~~~~~~~  549 (549)
                       .+ +..||.+.+++...   ..+ .....+||
T Consensus        77 ~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~  109 (340)
T PF12416_consen   77 STGKRESIGYVVLDLRSAVVPQEKNQKQKPKWY  109 (340)
T ss_pred             CCCcceeccEEEEEccccccccccccccCCCee
Confidence             23 47999999999988   222 23566665

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=92.13  E-value=1.5  Score=38.16  Aligned_cols=92  Identities=22%  Similarity=0.270  Sum_probs=60.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce-eeeccccc-CCCCCccccEEEEEEec---C-----CCCeEEEE
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET-RNKTRVVN-DCLNPIWNQTFDFVVED---G-----LHDMLIAE  516 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~-~~kT~~~~-~t~nP~wne~f~f~v~~---~-----~~~~l~i~  516 (549)
                      ...+.+.|++..+++..    ...-||+...+.... ..+|.... .+..-.|||.|.+.+.-   .     ....+.|.
T Consensus         6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            35688999999999862    123355554443221 23333332 44567899999998751   1     23368899


Q ss_pred             EEECCCCCCc-eeEEEEEecccccccc
Q 008910          517 VWDHDTFGKR-YLSRYFQNRKTWLHDG  542 (549)
Q Consensus       517 V~d~~~~~~d-~lG~~~i~l~~l~~~~  542 (549)
                      |+.....++. .+|.+.|+|.++....
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~~  108 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANED  108 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCcC
Confidence            9887654554 8999999999998853

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=92.11  E-value=1.6  Score=39.92  Aligned_cols=68  Identities=22%  Similarity=0.257  Sum_probs=48.2

Q ss_pred             eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCCC---CceeEEEEEeccc----cccccccceecC
Q 008910          482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG---KRYLSRYFQNRKT----WLHDGSEALRLF  549 (549)
Q Consensus       482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~---~d~lG~~~i~l~~----l~~~~~~~~~~~  549 (549)
                      ..++|.+.+.+.+|.|+|++.+.++..  ...-|.+++++.....   +..+|-+.++|-+    .+.+|.+.+-+|
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~~gt~l~Dg~H~L~vy  129 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMREDGTTLPDGSHELYVY  129 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecccCCcEEcCCcEEEEEE
Confidence            367888888999999999999988633  3446778777643322   2479999998843    467777665443

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.05  E-value=0.63  Score=41.48  Aligned_cols=73  Identities=18%  Similarity=0.225  Sum_probs=50.9

Q ss_pred             CCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEECCCCCCCceeEEEEEECcc
Q 008910          281 GKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSSELIGCAQVRLCE  353 (549)
Q Consensus       281 g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~  353 (549)
                      ..+|-||.+.+-.++.   ....|+.+.-+..+.|||...|++.  + +....|.|.||+.+..++...+|.+.++|-+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            4567788777653221   1234555555567899999888874  3 2345899999998865567799999999865

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.79  E-value=0.64  Score=42.04  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=61.1

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC---eEEeeeeC----CCCCCeeccEEEEEEe--c-CCCCEEEEE
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTIN----NDLNPIWNEHFEFIVE--D-ESTQHLVVR  331 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~----~t~nP~w~e~f~f~v~--~-~~~~~L~i~  331 (549)
                      ..+.|+|.++.+++........|-|+.+.+-.++..   ...|+...    -...+.|||...|.+.  + +....|.|.
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            567899999999987664456788888877532211   22333211    1235779999888764  2 244589999


Q ss_pred             EEECCCCC---------CCceeEEEEEECcc
Q 008910          332 IYDDEGIQ---------SSELIGCAQVRLCE  353 (549)
Q Consensus       332 v~d~~~~~---------~d~~lG~~~v~l~~  353 (549)
                      +|+....+         .+..||.+.++|-+
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEc
Confidence            99976543         35689998888854

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=91.77  E-value=0.55  Score=41.02  Aligned_cols=64  Identities=20%  Similarity=0.204  Sum_probs=44.2

Q ss_pred             ecccccCC-CCCccccEEEEEEe---cCCCCeEEEEEEECCCCCC-----ceeEEEEEecccc---ccccccceec
Q 008910          485 KTRVVNDC-LNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-----RYLSRYFQNRKTW---LHDGSEALRL  548 (549)
Q Consensus       485 kT~~~~~t-~nP~wne~f~f~v~---~~~~~~l~i~V~d~~~~~~-----d~lG~~~i~l~~l---~~~~~~~~~~  548 (549)
                      .|.....+ .++.|||.++|++.   -|.+..|.|+||..+....     ..||.+.+.+-+.   +..|...+.+
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~L~~G~~~L~l   98 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQLRQGPQKLSL   98 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSBBEEEEEEEE-
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCcccCCCEEEEE
Confidence            56555555 79999999999975   2466799999998766443     4899999988764   4556655554

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=90.99  E-value=3  Score=38.06  Aligned_cols=56  Identities=20%  Similarity=0.298  Sum_probs=40.9

Q ss_pred             CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCCC--CceeEEEEEECc
Q 008910          297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQS--SELIGCAQVRLC  352 (549)
Q Consensus       297 ~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~--d~~lG~~~v~l~  352 (549)
                      ..++|.+...+.+|.|+|++.+.+...  ....|.|.+++.....+  ...+|.+-+||-
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            357888899999999999998887643  45589998887553211  246787777773

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=90.58  E-value=2.8  Score=38.39  Aligned_cols=68  Identities=16%  Similarity=0.202  Sum_probs=50.0

Q ss_pred             eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC--C---CceeEEEEEeccc----cccccccceecC
Q 008910          482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF--G---KRYLSRYFQNRKT----WLHDGSEALRLF  549 (549)
Q Consensus       482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~--~---~d~lG~~~i~l~~----l~~~~~~~~~~~  549 (549)
                      ..++|.+.+...+|.|+|++.+.++..  ...-|.+++++....  .   ...+|-+.++|-.    .+.+|.+.+.+|
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~H~L~vY  131 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGEHDLIVY  131 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCCEEEEEE
Confidence            467888888899999999999988633  445788888764321  1   1369999998862    578888777665

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=89.79  E-value=4.6  Score=36.99  Aligned_cols=56  Identities=20%  Similarity=0.221  Sum_probs=41.1

Q ss_pred             CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCC-CC---CceeEEEEEECc
Q 008910          297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-QS---SELIGCAQVRLC  352 (549)
Q Consensus       297 ~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~-~~---d~~lG~~~v~l~  352 (549)
                      ..++|.+...+.+|.|+|++.+.+...  ....|.|.+++.... .+   ...+|.+-+||-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            357888888999999999998887532  455899999886532 11   246788777774

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=88.53  E-value=2.9  Score=33.98  Aligned_cols=73  Identities=16%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce----eeecccccCCCCCccccEEEEEEe---cCCCCeEEEEEEECCC
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDT  522 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~~  522 (549)
                      +.+.+...++.........++-||.+.+-++.+    ...|..+.....+.|||-.+|++.   -|.+..|.|.||+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            556777777776544333357788887632222    224554444556899999999865   3466799999998543

Outlier of C2 family.

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=87.87  E-value=2.4  Score=33.39  Aligned_cols=66  Identities=20%  Similarity=0.224  Sum_probs=45.4

Q ss_pred             CCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCceeEEEEEecccccc
Q 008910          469 ADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLH  540 (549)
Q Consensus       469 ~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~  540 (549)
                      .+..+.+.+++ .....|.-.. ..+..|++.|++.+.  ....|+|.||-+|.  +.+.|-..+.|++..+
T Consensus         9 ~eV~avLklDn-~~VgqT~Wk~-~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~--RslCav~~lrLEd~~~   74 (98)
T cd08687           9 SEVSAVLKLDN-TVVGQTQWKP-KSNQAWDQSFTLELE--RSRELEIAVYWRDW--RSLCAVKFLKLEDERH   74 (98)
T ss_pred             cceEEEEEEcC-eEEeeccccc-cccccccceeEEEee--cccEEEEEEEEecc--hhhhhheeeEhhhhcc
Confidence            46677777765 2344555432 357889999999997  45689999997765  3466777777777433

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=87.63  E-value=3  Score=36.32  Aligned_cols=56  Identities=18%  Similarity=0.390  Sum_probs=39.5

Q ss_pred             EEeeeeCCC-CCCeeccEEEEEEe--c-CCCCEEEEEEEECCCCCCC----ceeEEEEEECccc
Q 008910          299 KKSKTINND-LNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSS----ELIGCAQVRLCEL  354 (549)
Q Consensus       299 ~kT~~~~~t-~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~~~~~d----~~lG~~~v~l~~l  354 (549)
                      ..|+...-+ .++.|||...|.+.  + +....|.|.||+.+....+    ..||.+.++|-+-
T Consensus        22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            355555544 79999999988874  3 3455899999998765544    6899999998653

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=87.05  E-value=2.1  Score=39.19  Aligned_cols=57  Identities=19%  Similarity=0.328  Sum_probs=34.5

Q ss_pred             CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCCCC---ceeEEEEEECcc
Q 008910          297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSS---ELIGCAQVRLCE  353 (549)
Q Consensus       297 ~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d---~~lG~~~v~l~~  353 (549)
                      ..+.|.+...+.+|.|+|+|.+.+...  ....|.|.+++.....+.   ..+|.+.+||-+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            357788888899999999999988654  345899999997643211   689999888865

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=86.66  E-value=4  Score=36.98  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=42.9

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC---eEEeeeeCCCCCCeeccEEEEEEe--cC-CCCEEEEEEEECC
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDE  336 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~~t~nP~w~e~f~f~v~--~~-~~~~L~i~v~d~~  336 (549)
                      .++|+|+++..+ ..+......-||++.+-. +++   ..+|....-+.++.|||...|.+.  +. ....|.|.||+..
T Consensus        11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeeccc-CcCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            467788887633 222122233456554432 122   224555555678999998888764  32 3458999999974

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=85.48  E-value=16  Score=32.81  Aligned_cols=104  Identities=16%  Similarity=0.221  Sum_probs=66.9

Q ss_pred             CCCcEEEEEEeeCCCCeEEeeeeC--CCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCC--
Q 008910          282 KSDPYAVLFVRPLPEKTKKSKTIN--NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG--  357 (549)
Q Consensus       282 ~~dpyv~v~~~~~~~~~~kT~~~~--~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~--  357 (549)
                      +..-|+++.+.  ++.+.+|+...  ....-.++|.|.+.+... .+.|.++||.... ..+.+|+.+.+|+-.....  
T Consensus        36 ~~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~  111 (168)
T PF15625_consen   36 KTRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTS  111 (168)
T ss_pred             heeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccccc
Confidence            34568888886  34556665542  334457789999999775 4589999999987 5789999999998654322  


Q ss_pred             ce--eEEEEEccccccc----------------cCCCceeeEEEEEEEEe
Q 008910          358 KV--KDVWLKLVKDLDV----------------QRDTKYRGQVHLELLYC  389 (549)
Q Consensus       358 ~~--~~~w~~L~~~~~~----------------~~~~~~~G~l~l~l~~~  389 (549)
                      ..  ...|+....+...                ......+|.|.+++.|.
T Consensus       112 ~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~  161 (168)
T PF15625_consen  112 TDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWA  161 (168)
T ss_pred             ccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEe
Confidence            11  3445544332211                11123467888887775

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=84.65  E-value=2.4  Score=41.15  Aligned_cols=78  Identities=18%  Similarity=0.178  Sum_probs=55.6

Q ss_pred             ccccEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCC
Q 008910          445 IIRGVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT  522 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~  522 (549)
                      ...|+|.++++.+++|.....  .-+.+-||.+.+.. +.+.+|.+......=.|.|.|+..+.+  ...+.+-||.++.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr-qh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~p  124 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR-QHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPP  124 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecc-cCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCc
Confidence            457999999999999976443  33468899998774 345556554444445688999888764  3578899998876


Q ss_pred             CCC
Q 008910          523 FGK  525 (549)
Q Consensus       523 ~~~  525 (549)
                      ..+
T Consensus       125 q~R  127 (442)
T KOG1452|consen  125 QRR  127 (442)
T ss_pred             hhh
Confidence            543

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=83.14  E-value=2.8  Score=46.62  Aligned_cols=107  Identities=12%  Similarity=0.231  Sum_probs=77.7

Q ss_pred             CCcEEEEEEeeCCCCeEEeeeeCCC-CCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeE
Q 008910          283 SDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD  361 (549)
Q Consensus       283 ~dpyv~v~~~~~~~~~~kT~~~~~t-~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~  361 (549)
                      .++|+.+.+.  .....+|..+.+. .+|.|.+.|......... .+.+.+-+.+..+-...+|.+.++...+..+....
T Consensus       138 ~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g-~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~  214 (887)
T KOG1329|consen  138 LENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDIGFAHKAG-YVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG  214 (887)
T ss_pred             ccchheeeec--hhhhhchhhhhcccccchhhhhcccccccccc-EEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence            4889988886  2334556666666 799999999888776543 78888888887665789999999999998888888


Q ss_pred             EEEEccccccccCCCceeeEEEEEEEEeecccC
Q 008910          362 VWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME  394 (549)
Q Consensus       362 ~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~  394 (549)
                      .|+++......  .....-.+.+.+.|.++...
T Consensus       215 ~~~~Il~~d~~--~~~~~~~~~~~~~~~~~~~~  245 (887)
T KOG1329|consen  215 GWFPILDNDGK--PHQKGSNESLRLGFTPMEKD  245 (887)
T ss_pred             ceeeeeccCCc--cccCCcccceEEeeEeechh
Confidence            99988643321  11223356777888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	549
1rlw_A	126	Calcium-Phospholipid Binding Domain From Cytosolic		5e-09
1rlw_A	126	Calcium-Phospholipid Binding Domain From Cytosolic		1e-04
1bci_A	138	C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim		9e-09
1bci_A	138	C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim		1e-04
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		1e-08
1cjy_A	749	Human Cytosolic Phospholipase A2 Length = 749		2e-08
1cjy_A	749	Human Cytosolic Phospholipase A2 Length = 749		9e-05
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-08
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		5e-04
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		3e-08
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		8e-08
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		9e-05
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		9e-08
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		1e-07
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		3e-07
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		3e-07
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		3e-07
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		4e-07
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		7e-07
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		8e-07
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		7e-07
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		8e-05
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		8e-07
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		9e-05
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		3e-06
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		3e-06
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		1e-05
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		3e-06
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		1e-05
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		3e-06
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		1e-05
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		3e-06
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		1e-05
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		3e-06
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		1e-05
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		4e-06
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		1e-05
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		5e-06
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		1e-05
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		9e-06
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		5e-04
3pyc_A	132	Crystal Structure Of Human Smurf1 C2 Domain Length		2e-05
2jqz_A	131	Solution Structure Of The C2 Domain Of Human Smurf2		2e-05
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-05
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		3e-04

>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 22  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 338 IQSSELIGCAQVRLCELEPG 357
           +   E +G A   +  ++ G
Sbjct: 82  VM-DETLGTATFTVSSMKVG 100

>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 464 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 519
           D++   DPYV L +  + ++R +TR  N+ +NP+WN+TF+F+++    ++L   + D
Sbjct: 22  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD 78

>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 338 IQSSELIGCAQVRLCELEPG 357
           +   E +G A   +  ++ G
Sbjct: 97  VM-DETLGTATFTVSSMKVG 115

>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 464 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 519
           D++   DPYV L +  + ++R +TR  N+ +NP+WN+TF+F+++    ++L   + D
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD 93

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 436 DASQKRREVII-----RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTR 487
           D +++R  + I     R VL V V  A+NL   D  G +DPYV L +    KSE++ KT+
Sbjct: 155 DHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 214
Query: 488 VVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD 521
            +   LNP WN+TF F +++   D  L  E+WD D
Sbjct: 215 TIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249

>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 338 IQSSELIGCAQVRLCELEPG 357
           +   E +G A   +  ++ G
Sbjct: 97  VM-DETLGTATFTVSSMKVG 115

>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 464 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 519
           D++   DPYV L +  + ++R +TR  N+ +NP+WN+TF+F+++    ++L   + D
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD 93

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
           P GTLEV LV AKGL + D +   DPY  L  R   +K+  ++ +     P WNE F F 
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT--TPEWNETFIFT 65
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYR 379
           V  E T  L  +I+D +     + +G A +    LEP                 +D +Y+
Sbjct: 66  VS-EGTTELKAKIFDKDVGTEDDAVGEATIP---LEP--VFVEGSIPPTAYNVVKDEEYK 119
Query: 380 GQVHLELLYCPFG 392
           G++ + L + P G
Sbjct: 120 GEIWVALSFKPSG 132

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLN--PIWNQTFDFV 504
            G L V ++ A+ L  +D +   DPYV LT +   T+++   V + +   P WN+TF F 
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 505 VEDGLHDMLIAEVWDHD 521
           V +G  + L A+++D D
Sbjct: 66  VSEGTTE-LKAKIFDKD 81

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 436 DASQKRREVII-----RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTR 487
           D+ ++R  + I     R VL V V  A+NL   D  G +DPYV L +    KSE++ KT+
Sbjct: 14  DSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 73
Query: 488 VVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD 521
            +   LNP WN+TF F +++   D  L  E+WD D
Sbjct: 74  TIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 108

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFI 319
           L VK+V    L  KD+ G SDPY  L +    E  +    ++KTI   LNP WNE F F 
Sbjct: 23  LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDT 376
           V + S   L+  ++D+  +   + +G   V L  L   +P                   +
Sbjct: 83  V-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHKS 141
Query: 377 KYRGQVHLELLYCP 390
           + +G + L++ Y P
Sbjct: 142 RVKGFLRLKMAYMP 155

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 449 VLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRN----KTRVVNDCLNPIWNQTFDF 503
           +L V V+   +L   D+ G +DPYV L++    E R     +T+ +   LNP WN+ F F
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 504 VVEDGLHDMLIAEVWDHD 521
            V    H +L  EV+D +
Sbjct: 82  RVNPSNHRLLF-EVFDEN 98

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           G+L V V+ A +L A+D  GK+DP+ +L +     R +T  V   LNP WN+ F F ++D
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLEL--GNDRLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 508 GLHDMLIAEVWDHD 521
            +HD+L   V+D D
Sbjct: 71  -IHDVLEVTVFDED 83

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           L VTV  A+NL   D  G +DPYV L +    K+E++ KT+ +   LNP WN++F F ++
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 507 DGLHD-MLIAEVWDHD 521
               D  L  E+WD D
Sbjct: 80  PSDKDRRLSVEIWDWD 95

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           + VTV  A NL   D  G +DPYV L +    ++ T+ KTR V   LNP+WN+TF F ++
Sbjct: 22  IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 507 DG-LHDMLIAEVWDHD 521
            G +   L  EVWD D
Sbjct: 82  PGDVERRLSVEVWDWD 97

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           L VTV  A+NL   D  G +DPYV L +    K+E++ KT+ +   LNP WN++F F ++
Sbjct: 19  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 507 DGLHD-MLIAEVWDHD 521
               D  L  E+WD D
Sbjct: 79  PSDKDRRLSVEIWDWD 94

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           L VTV  A+NL   D  G +DPYV L +    K+E++ KT+ +   LNP WN++F F ++
Sbjct: 18  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 507 DGLHD-MLIAEVWDHD 521
               D  L  E+WD D
Sbjct: 78  PSDKDRRLSVEIWDWD 93

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 428 TEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTR 487
           TE  + EK    + ++    G L V VI A  L A    GK++PY  ++M        TR
Sbjct: 367 TEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISM--GSQSYTTR 424
Query: 488 VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG 524
            + D LNP WN    F ++D   D+L   ++D D F 
Sbjct: 425 TIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFS 461

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           + + +V A+GL  KD  G SDPY  + V    +  K++KTI  +LNP+W E+F F   + 
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFECHN- 74
Query: 324 STQHLVVRIYD-DEGIQS 340
           S+  + VR+ D D+ I+S
Sbjct: 75  SSDRIKVRVLDEDDDIKS 92

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           +S+TV+ A+ L A D  G +DPYV + + K++ R KT   N  LNP+W + F F   +  
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGN--LNPVWEENFHFECHNS- 75
Query: 510 HDMLIAEVWDHDTFGKRYLSRYFQ 533
            D +   V D D   K  + + F+
Sbjct: 76  SDRIKVRVLDEDDDIKSRVKQRFK 99

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 309
           ++S L  +    L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  N
Sbjct: 19  EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78
Query: 310 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
           P+WNE  ++     ED   + L + + D++    +E IG  +  L +L+
Sbjct: 79  PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 127

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF--- 503
           L  T+I A+ L   D  G ADPYV L +    +++   +T+ + +  NP+WN+T  +   
Sbjct: 31  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 504 VVEDGLHDMLIAEVWDHDTFG 524
             ED     L   V D D FG
Sbjct: 91  TEEDMQRKTLRISVCDEDKFG 111

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 309
           ++S L  +    L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  N
Sbjct: 17  EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 76
Query: 310 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
           P+WNE  ++     ED   + L + + D++    +E IG  +  L +L+
Sbjct: 77  PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 125

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF--- 503
           L  T+I A+ L   D  G ADPYV L +    +++   +T+ + +  NP+WN+T  +   
Sbjct: 29  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 504 VVEDGLHDMLIAEVWDHDTFG 524
             ED     L   V D D FG
Sbjct: 89  TEEDMQRKTLRISVCDEDKFG 109

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 449 VLSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTF---DFV 504
            L+V ++ A+ LPA D  G +DP+V +  +   + + +T+V    LNP WN+TF    F 
Sbjct: 27  TLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFP 86
Query: 505 VEDGLHDMLIAEVWDHDTFGK 525
            E  +  +L  +V D+D F +
Sbjct: 87  YEKVVQRILYLQVLDYDRFSR 107

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 139

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 506 EDGLHDMLIAEVWDHDTFGKR 526
           E G   +++A V+D D F K 
Sbjct: 104 ELGGKTLVMA-VYDFDRFSKH 123

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 506 EDGLHDMLIAEVWDHDTFGKR 526
           E G   +++A V+D D F K 
Sbjct: 96  ELGGKTLVMA-VYDFDRFSKH 115

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 506 EDGLHDMLIAEVWDHDTFGKR 526
           E G   +++A V+D D F K 
Sbjct: 96  ELGGKTLVMA-VYDFDRFSKH 115

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           + + + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--E 506
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 507 DGLHDMLIAEVWDHDTFGKR 526
           +     L+  V+D D F K 
Sbjct: 81  ELAGKTLVMAVYDFDRFSKH 100

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 79  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 114

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 450 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 505
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 506 EDGLHDMLIAEVWDHDTFGKR 526
           E G   +++A V+D D F K 
Sbjct: 79  ELGGKTLVMA-VYDFDRFSKH 98

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 309
           ++S   L   G L V +++A  L   DL G SDPY  A L       K +K+    N LN
Sbjct: 143 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 202
Query: 310 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 349
           P +NE   F V  ES ++  L + + D + I  +E+IG  +V
Sbjct: 203 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 502
           G+L+VT+I A NL A DL G +DPYV   +++  +   + KT +  + LNP +N+   FD
Sbjct: 153 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 212
Query: 503 FVVEDGLHDMLIAEVWDHDTFG 524
              E   +  L   V D+D  G
Sbjct: 213 VAPESVENVGLSIAVVDYDCIG 234

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 309
           ++S   L   G L V +++A  L   DL G SDPY  A L       K +K+    N LN
Sbjct: 142 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 201
Query: 310 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 349
           P +NE   F V  ES ++  L + + D + I  +E+IG  +V
Sbjct: 202 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 502
           G+L+VT+I A NL A DL G +DPYV   +++  +   + KT +  + LNP +N+   FD
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 503 FVVEDGLHDMLIAEVWDHDTFG 524
              E   +  L   V D+D  G
Sbjct: 212 VAPESVENVGLSIAVVDYDCIG 233

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV 320
           + V+++   GL  KD++G SDPY  V    P+     + ++KTI   LNP WNE   F V
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 321 EDESTQH-LVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDT 376
             +  QH L+  ++D+  +   + +G   V L  L    P                   +
Sbjct: 82  HPQ--QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS 139
Query: 377 KYRGQVHLELLYCP 390
           + +G + L++ Y P
Sbjct: 140 RVKGYLRLKMTYLP 153

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 449 VLSVTVILAENLPASDLMGKADPYVVLT----MKKSETRNKTRVVNDCLNPIWNQTFDFV 504
           ++ V VI    L   D++G +DPYV +T    M    T  +T+ +   LNP WN+   F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 505 VEDGLHDMLIAEVWDHDTFGK 525
           V    H +L  EV+D +   +
Sbjct: 81  VHPQQHRLLF-EVFDENRLTR 100

>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain Length = 132

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           + +TV+ A+NL   D     DP+  + +  S   + T  V + L+P WNQ +D  V  G 
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV--GK 64
Query: 510 HDMLIAEVWDHDTFGKR 526
            D +   VW+H    K+
Sbjct: 65  TDSITISVWNHKKIHKK 81

>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2 Length = 131

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           L +TV+ A+NL   D     DP+  + +  S   + T  V + L+P WNQ +D  +  G 
Sbjct: 5   LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYI--GK 62
Query: 510 HDMLIAEVWDHDTFGKR 526
            D +   VW+H    K+
Sbjct: 63  SDSVTISVWNHKKIHKK 79

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV 320
           + VK++   GL  KD++G SDPY  V    P+     + ++KTI   LNP WNE   F V
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDTK 377
             +    ++  ++D+  +   + +G   V L  L    P                   ++
Sbjct: 70  LPQR-HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR 128
Query: 378 YRGQVHLELLYCP 390
            +G + L++ Y P
Sbjct: 129 VKGYLRLKMTYLP 141

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 448 GVLSVTVILAENLPASDLMGKADPYV------------VLTMKKSETRNKTRVVNDCLNP 495
           G L + ++ A NL   D  G +DP+V            V+    +E + +T+ V   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 496 IWNQTFDF---VVEDGLHDMLIAEVWDHDTFG 524
            WNQT  +    +E  +   L   VWD+D F 
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	549
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-40
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-23
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-40
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-22
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-37
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	6e-23
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-36
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-22
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	4e-36
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	2e-25
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	8e-36
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	9e-23
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-33
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-15
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-15
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-32
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-20
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	5e-31
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-15
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-14
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	4e-28
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	4e-23
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	4e-27
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	9e-23
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	8e-27
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	5e-26
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	4e-25
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-21
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-24
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	4e-19
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-23
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	5e-18
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	8e-23
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-18
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	8e-23
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	5e-18
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-22
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	4e-21
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-22
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	4e-18
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-21
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-18
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	2e-19
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	7e-15
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-19
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-15
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-19
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	6e-17
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	3e-19
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	5e-16
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	7e-19
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	1e-16
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	9e-19
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-18
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	9e-19
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-17
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-18
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	3e-14
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-18
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	9e-16
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-18
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-17
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	8e-18
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	4e-17
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-17
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-17
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-17
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-17
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	7e-17
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	4e-16
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-16
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-15
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-16
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	5e-16
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	7e-14
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-09
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-12
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	7e-12
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	3e-11
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	1e-08
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-09
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	6e-08
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	4e-09
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	5e-06
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	1e-07
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	2e-05
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	4e-07
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	9e-07
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	8e-05

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  142 bits (359), Expect = 2e-40
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
            P GTLEV LV AKGL + D +   DPY  L  R   +  K +        P WNE F F
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR--TQDQKSNVAEGMGTTPEWNETFIF 64

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTK 377
            V + +T+ L  +I+D +     + +G A + L  +   G +      +VK      D +
Sbjct: 65  TVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEE 117

Query: 378 YRGQVHLELLYCPFGMEN 395
           Y+G++ + L + P G  +
Sbjct: 118 YKGEIWVALSFKPSGPSS 135

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 94.3 bits (235), Expect = 3e-23
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVE 506
           G L V ++ A+ L  +D +   DPYV LT +      K+ V       P WN+TF F V 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVS 67

Query: 507 DGLHDMLIAEVWDHDTFGK 525
           +G    L A+++D D   +
Sbjct: 68  EG-TTELKAKIFDKDVGTE 85

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  142 bits (360), Expect = 4e-40
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 7/143 (4%)

Query: 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPI 311
           EL       + VK++   GL  KD++G SDPY  + +         + ++KTI   LNP 
Sbjct: 1   ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60

Query: 312 WNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           WNE   F V  +    ++  ++D+  +   + +G   V L  L     +       KD  
Sbjct: 61  WNEEILFRVLPQ-RHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119

Query: 372 VQRDT---KYRGQVHLELLYCPF 391
           +   +   + +G + L++ Y P 
Sbjct: 120 LHPRSHKSRVKGYLRLKMTYLPK 142

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 92.6 bits (230), Expect = 4e-22
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 503
            V+ V VI    L   D++G +DPYV +T+        T  +T+ +   LNP WN+   F
Sbjct: 8   RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67

Query: 504 VVEDGLHDMLIAEVWDHDTFGK 525
            V       ++ EV+D +   +
Sbjct: 68  RVLP-QRHRILFEVFDENRLTR 88

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  134 bits (339), Expect = 2e-37
 Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 244 KIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKK 300
             V  L  D      +    + V+++   GL  KD++G SDPY  + +         + +
Sbjct: 7   VEVFGLLEDE-----ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQ 61

Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
           +KTI   LNP WNE   F V  +    L+  ++D+  +   + +G   V L  L     +
Sbjct: 62  TKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120

Query: 361 DVWLKLVKDLDVQ---RDTKYRGQVHLELLYCP 390
                  KD  +      ++ +G + L++ Y P
Sbjct: 121 LERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 94.4 bits (235), Expect = 6e-23
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 503
            ++ V VI    L   D++G +DPYV +T+        T  +T+ +   LNP WN+   F
Sbjct: 20  RIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF 79

Query: 504 VVEDGLHDMLIAEVWDHDTFGK 525
            V       L+ EV+D +   +
Sbjct: 80  RVHP-QQHRLLFEVFDENRLTR 100

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  131 bits (331), Expect = 2e-36
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
           G L V +  A  +  K   GK DP   +  +    + KK+K ++N+LNP+WNE  EF + 
Sbjct: 7   GMLRVIVESASNI-PKTKFGKPDPIVSVIFKD---EKKKTKKVDNELNPVWNEILEFDLR 62

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY 378
               + +  L + + D E I  ++LIG A V L +L   + + +  KL+  L+ ++    
Sbjct: 63  GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQDT 121

Query: 379 RGQVHLELLYCP 390
              + L + Y P
Sbjct: 122 GATIDLVIGYDP 133

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV-- 505
           G+L V V  A N+P     GK DP V +  K    + KT+ V++ LNP+WN+  +F +  
Sbjct: 7   GMLRVIVESASNIPK-TKFGKPDPIVSVIFKD--EKKKTKKVDNELNPVWNEILEFDLRG 63

Query: 506 -EDGLHDMLIAEVWDHDTFGK 525
                   L   V D +T G+
Sbjct: 64  IPLDFSSSLGIIVKDFETIGQ 84

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  130 bits (329), Expect = 4e-36
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
           S  ++K VG L+VK+++A  L   D  GKSDP+ +L +        ++ T+  +LNP WN
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKNLNPEWN 61

Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 373
           + F F ++D     L V ++D++G +  + +G   + L  +  G+     LK        
Sbjct: 62  KVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL---- 116

Query: 374 RDTKYRGQVHLELLYC 389
            +  ++G ++LE+   
Sbjct: 117 -EQAFKGVIYLEMDLI 131

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  100 bits (252), Expect = 2e-25
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           G+L V V+ A +L A+D  GK+DP+ +L +     R +T  V   LNP WN+ F F ++D
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGND--RLQTHTVYKNLNPEWNKVFTFPIKD 70

Query: 508 GLHDMLIAEVWDHDTFGK 525
            +HD+L   V+D D    
Sbjct: 71  -IHDVLEVTVFDEDGDKP 87

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  129 bits (325), Expect = 8e-36
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 264 LEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
             V +++A  +T     D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI+
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
           +      L + + D   +   E +G A   +  ++ G+ K+V            +     
Sbjct: 65  DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIF--------NQVTEM 115

Query: 381 QVHLELLYC 389
            + + L   
Sbjct: 116 VLEMSLEVA 124

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 92.8 bits (231), Expect = 9e-23
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 448 GVLSVTVILAENL---PASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLNPIWNQTFDF 503
              +V V+ A  +      D++   DPYV L +    ++R +TR  N+ +NP+WN+TF+F
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 504 VVEDGLHDMLIAEVWDHDTFG 524
           +++    ++L   + D +   
Sbjct: 63  ILDPNQENVLEITLMDANYVM 83

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  127 bits (320), Expect = 3e-33
 Identities = 64/271 (23%), Positives = 101/271 (37%), Gaps = 64/271 (23%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 19  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78

Query: 322 DE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 379
               + + LV+ +YD +     ++I                                   
Sbjct: 79  YSELAGKTLVMAVYDFDRFSKHDII----------------------------------- 103

Query: 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQ 439
           G+  + +    FG                                    E  E   D   
Sbjct: 104 GEFKVPMNTVDFGHVTEEWRDLQSA----------------------EKEEQEKLGDICF 141

Query: 440 KRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPI 496
             R V   G L+V ++ A+NL   D+ G +DPYV + +    K   + KT +  + LNP 
Sbjct: 142 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 201

Query: 497 WNQTFDFVV--EDGLHDMLIAEVWDHDTFGK 525
           +N++F F V  E      ++  V D+D  GK
Sbjct: 202 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGK 232

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 75.2 bits (185), Expect = 3e-15
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
              L V +I A  LPA D+ G +DPYV +  +   + + +T+V    LNP++N+ F F V
Sbjct: 18  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77

Query: 506 --EDGLHDMLIAEVWDHDTFGK 525
              +     L+  V+D D F K
Sbjct: 78  PYSELAGKTLVMAVYDFDRFSK 99

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 75.2 bits (185), Expect = 3e-15
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT    N LNP +NE F F 
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 373
           V  E      +VV + D + I  ++ IG  +V +     G     W  ++ +    
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG--KVFVGYNSTGAELRHWSDMLANPRRP 263

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  131 bits (330), Expect = 2e-32
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 248 ILPGDYSELELKPVGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTI 304
           I P  +  +E +      V +++A  +T     D++   DPY  LF+   P+  K+++  
Sbjct: 4   IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF 63

Query: 305 NNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWL 364
           NND+NP+WNE FEFI++      L + + D   +   E +G A   +  ++ G+ K+V  
Sbjct: 64  NNDINPVWNETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPF 122

Query: 365 KL--VKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFS 406
               V ++ ++   +      L         E  F      +  
Sbjct: 123 IFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIR 166

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 94.2 bits (233), Expect = 2e-20
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 439 QKRREVIIRGVLSVTVILAENL---PASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLN 494
               E       +V V+ A  +      D++   DPYV L +    ++R +TR  N+ +N
Sbjct: 9   HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68

Query: 495 PIWNQTFDFVVEDGLHDMLIAEVWDHDTF 523
           P+WN+TF+F+++    ++L   + D +  
Sbjct: 69  PVWNETFEFILDPNQENVLEITLMDANYV 97

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  121 bits (305), Expect = 5e-31
 Identities = 65/270 (24%), Positives = 101/270 (37%), Gaps = 61/270 (22%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L V+++QA  L  KD  G SDPY  +++ P  +K  ++K     LNPI+NE F+F   
Sbjct: 20  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF--- 76

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL-VKDLDVQRDTKYRG 380
                                           +   ++    L   V D D        G
Sbjct: 77  -------------------------------SVPLAELAQRKLHFSVYDFDRFSRHDLIG 105

Query: 381 QVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQK 440
           QV L+ L                      L + +  G    +    G     L    +  
Sbjct: 106 QVVLDNLLELAEQP-----------PDRPLWRDILEGGS--EKADLGELNFSLCYLPT-- 150

Query: 441 RREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIW 497
                  G+L+VT+I A NL A DL G +DPYV  ++    +   + KT +  + LNP +
Sbjct: 151 ------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 204

Query: 498 NQTFDF-VVEDGLHDM-LIAEVWDHDTFGK 525
           N+   F V  + + ++ L   V D+D  G 
Sbjct: 205 NEALVFDVAPESVENVGLSIAVVDYDCIGH 234

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 75.6 bits (186), Expect = 3e-15
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
              L V ++ A +LPA D  G +DPYV +  +   + + +T+V    LNPI+N+TF F V
Sbjct: 19  SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 78

Query: 506 --EDGLHDMLIAEVWDHDTFGK 525
              +     L   V+D D F +
Sbjct: 79  PLAELAQRKLHFSVYDFDRFSR 100

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 73.7 bits (181), Expect = 1e-14
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++A  L   DL G SDPY    +     + KK KT    N LNP +NE   F 
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQV 349
           V  E      L + + D + I  +E+IG  +V
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  109 bits (274), Expect = 4e-28
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 9/136 (6%)

Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
           S   L     L++ ++ AK   NK       PY  + V     ++KK++  NN  +P W 
Sbjct: 28  SMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWK 84

Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDL 370
           +    IV   S   L  R++  + ++S  L+G A + + E       K+++V + L    
Sbjct: 85  QPLTVIVTPVSK--LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG 142

Query: 371 DVQRDTKYRGQVHLEL 386
           D +  T+  G + + L
Sbjct: 143 D-KEPTETIGDLSICL 157

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 95.7 bits (238), Expect = 4e-23
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 12/110 (10%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           +  L +TVI A+            PYV +T+       KT   N+  +P W Q    +V 
Sbjct: 35  KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSK--KTEKCNNTNSPKWKQPLTVIVT 92

Query: 507 DGLHDMLIAEVWDHDTFGKRY--------LSRYFQNRKTWLHDGSEALRL 548
                 L   VW H T             +    ++    L +    L+L
Sbjct: 93  P--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQL 140

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  106 bits (265), Expect = 4e-27
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 20/144 (13%)

Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
            +   K    + + +V A+GL  KD  G SDPY  + V    +  K++KTI  +LNP+W 
Sbjct: 9   LDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG---KTKKRTKTIYGNLNPVWE 65

Query: 314 EHFEFIVEDESTQHLVVRIYD-----------DEGIQSSELIGCAQVRLCELEPGKVKDV 362
           E+F F   + S+  + VR+ D               +S + +G   + +  L      DV
Sbjct: 66  ENFHFECHN-SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE--MDV 122

Query: 363 WLKLVKDLDVQRDTKYRGQVHLEL 386
           W  L K       +   G + L +
Sbjct: 123 WYNLDK---RTDKSAVSGAIRLHI 143

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 93.7 bits (233), Expect = 9e-23
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
             +S+TV+ A+ L A D  G +DPYV + + K  T+ +T+ +   LNP+W + F F   +
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTVQVGK--TKKRTKTIYGNLNPVWEENFHFECHN 74

Query: 508 GLHDMLIAEVWDHDTFGKRYLSRYFQNRK 536
              D +   V D D   K  + + F+   
Sbjct: 75  -SSDRIKVRVLDEDDDIKSRVKQRFKRES 102

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  104 bits (261), Expect = 8e-27
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           + + ++ AK L  KD     DP+A + V     +   + T+ N L+P WN+H++  V   
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYVGKT 65

Query: 324 STQHLVVRIYDDEGI---QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
               + + +++ + I   Q +  +GC ++    +   K        +  L+       RG
Sbjct: 66  --DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRG 123

Query: 381 QVHLELLY 388
           Q+ + L  
Sbjct: 124 QIVVSLQT 131

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  102 bits (255), Expect = 5e-26
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 509
           + +TV+ A+NL   D     DP+  + +  S   + T  V + L+P WNQ +D  V    
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK-- 64

Query: 510 HDMLIAEVWDHDTFGKR 526
            D +   VW+H    K+
Sbjct: 65  TDSITISVWNHKKIHKK 81

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  100 bits (250), Expect = 4e-25
 Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 15/118 (12%)

Query: 417 GEKALKSGANGTEAIELEKDASQKRREVII-----RGVLSVTVILAENLPASDLMGKADP 471
           G   +  G  G        D+ ++R  + I     R VL V V  A+NL   D  G +DP
Sbjct: 1   GSPGISGGGGG------ILDSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDP 54

Query: 472 YVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHDTFGK 525
           YV L +    KSE++ KT+ +   LNP WN+TF F +++   D  L  E+WD D   +
Sbjct: 55  YVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 112

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 90.5 bits (225), Expect = 1e-21
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V +  AK L   D  G SDPY  L + P P+    +K+KTI   LNP WNE F F 
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 320 V-EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369
           + E +  + L V I+D +    ++ +G     + EL+   V   W KL+  
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG-WFKLLSQ 140

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 98.6 bits (246), Expect = 1e-24
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
             L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  NP+WNE  ++ 
Sbjct: 29  SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88

Query: 320 V---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
               ED   + L + + D++    +E IG  +  L +L+  + K+  + L +
Sbjct: 89  GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 82.8 bits (205), Expect = 4e-19
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 13/112 (11%)

Query: 427 GTEAIELEKDASQKRREVII-------RGVLSVTVILAENLPASDLMGKADPYVVLTM-- 477
           G+EA   + D +     +            L  T+I A+ L   D  G ADPYV L +  
Sbjct: 1   GSEANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLP 60

Query: 478 -KKSETRNKTRVVNDCLNPIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK 525
                 + +T+ + +  NP+WN+T  +     ED     L   V D D FG 
Sbjct: 61  GASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGH 112

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 96.2 bits (239), Expect = 1e-23
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 28/154 (18%)

Query: 247 PILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGK----------SDPYAVLFVRPLPE 296
            +  G  S   +K  G L V++ +A GL       +           DPY  + V     
Sbjct: 14  LVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ--V 71

Query: 297 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-- 354
           +  ++ T      P +NE F   V D    HL + ++ +  +     +    ++  EL  
Sbjct: 72  RVGQTSTKQKTNKPTYNEEFCANVTD--GGHLELAVFHETPLGYDHFVANCTLQFQELLR 129

Query: 355 --EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386
                   + W+ L             G+V + +
Sbjct: 130 TTGASDTFEGWVDLEP----------EGKVFVVI 153

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 80.4 bits (198), Expect = 5e-18
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 13/98 (13%)

Query: 438 SQKRREVIIRGVLSVTVILAENLPASDLMGK----------ADPYVVLTMKKSETRNKTR 487
           S     +   G L V +  A  L  +    +           DPY+ +++ +     +T 
Sbjct: 19  SMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVG-QTS 77

Query: 488 VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 525
                  P +N+ F   V DG H  L   V+     G 
Sbjct: 78  TKQKTNKPTYNEEFCANVTDGGH--LELAVFHETPLGY 113

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 93.6 bits (233), Expect = 8e-23
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
            TL VK+++A+ L  KD  G SDP+  +++ P  +   ++K    +LNP WNE F F   
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             E    + L +++ D +    ++ IG   + L +++  +++  W  L
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 81.2 bits (201), Expect = 2e-18
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDF-- 503
              L+V ++ A+ LPA D  G +DP+V + +    + + +T+V    LNP WN+TF F  
Sbjct: 25  ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84

Query: 504 -VVEDGLHDMLIAEVWDHDTFGK 525
              E  +  +L  +V D+D F +
Sbjct: 85  FPYEKVVQRILYLQVLDYDRFSR 107

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 93.6 bits (233), Expect = 8e-23
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 80.1 bits (198), Expect = 5e-18
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYV--VLTMKKSETRNKTRVVNDCLNPIWNQTFDFV 504
              L V +I A  LPA D+ G +DPYV   L   K +   +T+V    LNP++N+ F F 
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF-ETKVHRKTLNPVFNEQFTFK 91

Query: 505 V--EDGLHDMLIAEVWDHDTFGK 525
           V   +     L+  V+D D F K
Sbjct: 92  VPYSELGGKTLVMAVYDFDRFSK 114

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 42  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101

Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 80.2 bits (198), Expect = 4e-18
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFVV 505
              L V +I A  LPA D+ G +DPYV + +    + + +T+V    LNP++N+ F F V
Sbjct: 41  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100

Query: 506 --EDGLHDMLIAEVWDHDTFGK 525
              +     L+  V+D D F K
Sbjct: 101 PYSELGGKTLVMAVYDFDRFSK 122

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 89.1 bits (221), Expect = 3e-21
 Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 27/141 (19%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGK-----------SDPYAVLFVRPLPEKTKKSKTINND 307
              G L++K+ +A  L       +            DPY  L V     +  ++ T    
Sbjct: 3   VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKT 60

Query: 308 LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLK 365
            +P W++ F   V +   + + + ++ D  I   + +    ++  EL     +  + W+ 
Sbjct: 61  NSPAWHDEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118

Query: 366 LVKDLDVQRDTKYRGQVHLEL 386
           L             G+V++ +
Sbjct: 119 LEP----------EGKVYVII 129

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 80.7 bits (199), Expect = 2e-18
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 14/89 (15%)

Query: 448 GVLSVTVILAENLPASDLMGK-----------ADPYVVLTMKKSETRNKTRVVNDCLNPI 496
           G+L + +  A +L  +    +            DPY+ L +  S    +T       +P 
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG-QTATKQKTNSPA 64

Query: 497 WNQTFDFVVEDGLHDMLIAEVWDHDTFGK 525
           W+  F   V +G    +   V+     G 
Sbjct: 65  WHDEFVTDVCNG--RKIELAVFHDAPIGY 91

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
             L V  ++A      +  G  D Y    V       + ++      L+  W E     +
Sbjct: 26  AELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             E+  T  L + +   +      + G  ++ L           W +L
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM--KKSETRNKTRVVNDCLNPIWNQTFDFV 504
           +  L VT + A         G  D YV  ++  +      +T +    L+  W +     
Sbjct: 25  KAELFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81

Query: 505 V--EDGLHDMLIAEVWDHDTFGK 525
           +  E+     L   +   D F +
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSR 104

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 84.8 bits (210), Expect = 2e-19
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
           G LEV++++A+ LT K        PY  +++        K KT      L+P++ +   F
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89

Query: 319 IVEDESTQHLVVRIYDDEG-IQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               +  + L V ++ D G +     +G AQ+ L EL+   +   W KL
Sbjct: 90  DESPQG-KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 72.9 bits (179), Expect = 2e-15
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 447 RGVLSVTVILAENLPASDLM-GKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFD 502
           +G L V VI A +L           PYV + +        + KTR+    L+P++ Q+  
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88

Query: 503 FVVEDGLHDMLIAEVW-DHDTFGK 525
           F        +L   VW D+     
Sbjct: 89  FDESPQ-GKVLQVIVWGDYGRMDH 111

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
            +L V + +   L   D    +S+PY   ++ P   +  K KT    + +NP+++E   +
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82

Query: 319 IV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376
            +     + + L   ++       +  +G A++++   +  K  D  L L   +  + + 
Sbjct: 83  EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEG 142

Query: 377 KY 378
            +
Sbjct: 143 HH 144

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 77.0 bits (190), Expect = 6e-17
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 447 RGVLSVTVILAENLPASDLM-GKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFD 502
              L V V     L  +D    +++PYV   +   K  + + KT +  D +NP++++T  
Sbjct: 22  TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLR 81

Query: 503 FVVE-DGLHD-MLIAEVWDHDTFGKR 526
           + +    L    L   VW H  FG+ 
Sbjct: 82  YEIPESLLAQRTLQFSVWHHGRFGRN 107

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 83.6 bits (207), Expect = 3e-19
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 6/112 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT---KKSKTINNDLNPIWNEHFEF 318
               + ++Q   L+             + V P  E T    +++ ++     ++NE F  
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102

Query: 319 IVEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLV 367
            +       + L V +   +     E +G AQ+ L E+   G+    W  L+
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 74.4 bits (183), Expect = 5e-16
 Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFD 502
               ++ +I   NL A          + + +    + +    +TR ++     ++N+ F 
Sbjct: 42  NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFW 101

Query: 503 FVV-EDGLHD-MLIAEVWDHDTFGK 525
             +    LH   L  +V   D    
Sbjct: 102 VSMSYPALHQKTLRVDVCTTDRSHL 126

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 81.9 bits (203), Expect = 7e-19
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
           GTL + ++  K L  +D     +PY   ++ P   KT  +K+K      NP +NE   + 
Sbjct: 20  GTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78

Query: 320 V---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
               E    + L + +   E ++ +  +G   + L +    K    W +L
Sbjct: 79  GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQL 128

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
            G L + V+  ++L   D     +PYV   +       ++ KT++     NP +N+   +
Sbjct: 19  NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY 77

Query: 504 --VVEDGLHD-MLIAEVWDHDTFGKR 526
               ++ L    L   V   ++  + 
Sbjct: 78  SGYSKETLRQRELQLSVLSAESLREN 103

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 82.1 bits (203), Expect = 9e-19
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 15/94 (15%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM------------KKSETRNKTRVVNDCLN 494
            G L + ++ A NL   D  G +DP+V + +              +E + +T+ V   LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 495 PIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK 525
           P WNQT  +     E  +   L   VWD+D F  
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSS 110

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 81.7 bits (202), Expect = 1e-18
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-----------LPEKTKKSKTINNDLNP 310
           G L + ++QA+ L  +D  G SDP+  +++ P             E  +++K +   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 311 IWNEHFEFIV---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            WN+   +     E    + L V ++D +   S++ +G   + L           W  L
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 82.0 bits (203), Expect = 9e-19
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
              L VT++ A++LP+ +     +PYV +     +  + + +T+ V   L P WNQTF +
Sbjct: 20  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79

Query: 504 --VVEDGLHD-MLIAEVWDHDTFGKR 526
             V      + ML   +WD     + 
Sbjct: 80  SPVHRREFRERMLEITLWDQARVREE 105

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V ++ AK L +++     +PY  ++  P       +++KT+   L P WN+ F + 
Sbjct: 21  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80

Query: 320 V---EDESTQHLVVRIYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366
                +   + L + ++D   +  + SE +G   + L           W KL
Sbjct: 81  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 131

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 262 GTLEVKLVQAKGL-------TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNE 314
             L V++++A+ L        ++  +  S+PY  + + P  + +K++        P++ E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 315 HFEFIV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            + F +   +   + L++ + D +      +IG   V LCE++  K    W  L
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 14/91 (15%)

Query: 447 RGVLSVTVILAENLPA-------SDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPI 496
              L+V VI A +LP           M  ++PYV + +   +K+    +T V      P+
Sbjct: 25  HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKN--SKQTGVKRKTQKPV 82

Query: 497 WNQTFDFVV--EDGLHDMLIAEVWDHDTFGK 525
           + + + F +   +     L+  V D D F +
Sbjct: 83  FEERYTFEIPFLEAQRRTLLLTVVDFDKFSR 113

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
               V + +A+GL   D     SDPY  + + P  +   K++ +   L+P ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 321 ---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK 368
                     L   I   +     ++IG   + L  +E  + K  +  +++ 
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 73.1 bits (180), Expect = 9e-16
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGK-ADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDF- 503
           R    V +  A  LPA D     +DPY+ +T+  + + + KTRV+   L+P +++TF F 
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80

Query: 504 -VVEDGLHDM-LIAEVWDHDTFGK 525
            +    + ++ L   +   D F +
Sbjct: 81  GIPYTQIQELALHFTILSFDRFSR 104

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
              L VT++ A++LP+ +     +PYV +     +  + + +T+ V   L P WNQTF +
Sbjct: 17  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76

Query: 504 --VVEDGLHD-MLIAEVWDHDTFGKR 526
             V      + ML   +WD     + 
Sbjct: 77  SPVHRREFRERMLEITLWDQARVREE 102

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
             L V ++ AK L +++     +PY  ++  P       +++KT+   L P WN+ F + 
Sbjct: 18  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77

Query: 320 V---EDESTQHLVVRIYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366
                +   + L + ++D   +  + SE +G   + L           W KL
Sbjct: 78  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 128

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 79.7 bits (197), Expect = 8e-18
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
             VL + +I  + L +    G  DPYV +++          KT+ V DC +P +++ F F
Sbjct: 26  DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF 84

Query: 504 -VVEDGLHDMLIAEVWDHDTFGKR 526
            V E+     L+  VW+  +  ++
Sbjct: 85  PVQEEDDQKRLLVTVWNRASQSRQ 108

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 77.8 bits (192), Expect = 4e-17
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF- 318
             L + +++ KGL +K   G  DPY  + + P   + +  KT  + +  +P ++EHF F 
Sbjct: 27  RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85

Query: 319 IVEDESTQHLVVRIYDDEGIQ-SSELIGCAQVRLCELE-PGKVKDVWLKL 366
           + E++  + L+V +++       S LIGC    +  L  P K    W  L
Sbjct: 86  VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
            ++ V +++A+ L   D+ G SDPY  +++    ++ +K KT     +LNPI+NE F F 
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           +  E  +   +++ + D + +  +++IG   +        
Sbjct: 76  IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGE 115

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
              + V +I A NL A D+ G +DPYV + +    K   + KT      LNPI+N++F F
Sbjct: 15  ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAF 74

Query: 504 VVE-DGLHD-MLIAEVWDHDTFGK 525
            +  + L +  +I  V D D   +
Sbjct: 75  DIPTEKLRETTIIITVMDKDKLSR 98

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
             L V +   + L        SDPY  +++ P   ++ + KT      LNP++++ F+F 
Sbjct: 24  NKLIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82

Query: 320 V--EDESTQHLVVRIYDDEGIQSSE--LIGCAQVRLCELEPGKVKDVWLKLVKD 369
           V   +   + L V + +  G  S +  L+G   V L   E  K    W  L +D
Sbjct: 83  VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
           R  L V V    NL A      +DPYV + +   K+   R KT V    LNP+++Q+FDF
Sbjct: 23  RNKLIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81

Query: 504 VV--EDGLHDMLIAEVWDHDTFGKR 526
            V   +     L   V +   F  +
Sbjct: 82  SVSLPEVQRRTLDVAVKNSGGFLSK 106

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 77.4 bits (191), Expect = 7e-17
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
           +G L V +I   +L A D  G +DP+V L +      + ++KT++    LNP +N+ F +
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95

Query: 504 VVE-DGLHD-MLIAEVWDHDTFGK 525
            ++   L    L   VWD+D    
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKS 119

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++   L   D  G SDP+  L+++P   K  K KT      LNP +NE F + 
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           +   D + + L + ++D +  +S++ IG  Q+ +     G+    W + +K+ D
Sbjct: 97  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKD 148

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
              L+V V+ A +LP SD+ G +DPYV + +   KK  ++ KT V     N ++N+ F F
Sbjct: 29  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 88

Query: 504 VVE-DGLHDM-LIAEVWDHDTFGK 525
            +  + L ++ +   V D +   +
Sbjct: 89  DIPCESLEEISVEFLVLDSERGSR 112

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
            TL V +++A+ L   D+ G SDPY  + +    ++  K KT       N ++NE F F 
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 320 VEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           +  E      +   + D E    +E+IG  ++ L     G     W ++  
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIG--RLVLGATAEGSGGGHWKEICD 138

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
            G L+V ++ A+NL   D+ G +DPYV + +    K   + KT +  + LNP +N++F F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 504 VVE-DGLHDM-LIAEVWDHDTFGK 525
            V  + +  + ++  V D+D  GK
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGK 107

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 74.8 bits (184), Expect = 5e-16
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT    N LNP +NE F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 320 VEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           V  E      +VV + D + I  ++ IG   V        
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 67.7 bits (165), Expect = 7e-14
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
            +L V V  A+   A +   K + YV L ++    ++ T  V     P W Q F F +  
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN--VKSTTIAVRGS-QPSWEQDFMFEINR 58

Query: 508 GLHDMLIAEVWDHDTFGKRYLSRY 531
            L   L  EVW+        +   
Sbjct: 59  -LDLGLTVEVWNKGLIWDTMVGTV 81

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 55.4 bits (133), Expect = 1e-09
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 20/138 (14%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L V + +AK    ++   K + Y  L V+ +   T   +       P W + F F + 
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG----SQPSWEQDFMFEIN 57

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL----EPGKVKDVWLKLVKDLDVQRDTK 377
                 L V ++ ++G+    ++G   + L  +    E G  +  WL L     +  D++
Sbjct: 58  RLDLG-LTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQA-IMADSE 112

Query: 378 YRGQV----HLELLYCPF 391
             G      H  LL   F
Sbjct: 113 ICGTKDPTFHRILLDAHF 130

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 69.5 bits (169), Expect = 1e-12
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 451 SVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-VVEDGL 509
            V+   AE+L         D Y+ +     E   +T VV +  NP W    DF  V    
Sbjct: 397 VVSNFRAEHLWGDYTT-ATDAYLKVFFGGQEF--RTGVVWNNNNPRWTDKMDFENVLLST 453

Query: 510 HDMLIAEVWDHDTFGK 525
              L  +VWD D    
Sbjct: 454 GGPLRVQVWDADYGWD 469

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 66.9 bits (162), Expect = 7e-12
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 16/140 (11%)

Query: 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF- 318
            +  L V   +A+ L        +D Y  +F      +  ++  + N+ NP W +  +F 
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTT-ATDAYLKVF---FGGQEFRTGVVWNNNNPRWTDKMDFE 447

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK-----DLDVQ 373
            V   +   L V+++D +     +L+G           G   +V  +L           +
Sbjct: 448 NVLLSTGGPLRVQVWDADYGWDDDLLGSCDR---SPHSG-FHEVTCELNHGRVKFSYHAK 503

Query: 374 RDTKYRGQVHLELLYCPFGM 393
                 G   LE  Y P G+
Sbjct: 504 CLPHLTGGTCLE--YAPQGL 521

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 60.4 bits (146), Expect = 3e-11
 Identities = 27/144 (18%), Positives = 63/144 (43%), Gaps = 18/144 (12%)

Query: 253 YSELELKPVGT---LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLN 309
           +    L P G+   L V L     L      G++D  A +  R    ++  S+ + N  +
Sbjct: 9   HHSSGLVPRGSHMALIVHLKTVSELR-----GRADRIAKVTFR---GQSFYSRVLENCED 60

Query: 310 PI-WNEHFEFIVED--ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
              ++E F + V    +  + L ++I++   + S++LIG  ++ L ++    V++  +++
Sbjct: 61  VADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV----VEENRVEV 116

Query: 367 VKDLDVQRDTKYRGQVHLELLYCP 390
              L    +   +  + +E+ Y  
Sbjct: 117 SDTLIDDNNAIIKTSLSMEVRYQA 140

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPI-WNQTFDFVVEDG 508
           L V +     L      G+AD    +T +       +RV+ +C +   +++TF + V   
Sbjct: 23  LIVHLKTVSELR-----GRADRIAKVTFRGQS--FYSRVLENCEDVADFDETFRWPVASS 75

Query: 509 L--HDMLIAEVWDHDTFGK 525
           +  +++L  +++++     
Sbjct: 76  IDRNEVLEIQIFNYSKVFS 94

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
            +L V V  A+   A +   K + YV L ++     + T  V     P W Q F F +  
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN--VESTTIAVRGS-QPSWEQDFMFEINR 67

Query: 508 GLHDMLIAEVWDHDTFGKRYLSRYF 532
            L   L  EVW+        +   +
Sbjct: 68  -LDLGLTVEVWNKGLIWDTMVGTVW 91

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 51.5 bits (123), Expect = 6e-08
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L V + +AK    ++   K + Y  L V+ +   T   +       P W + F F + 
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAVRG----SQPSWEQDFMFEIN 66

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL----EPGKVKDVWLKLVKDLDVQRD 375
                 L V ++ ++G+    ++G   + L  +    E G  +  WL L     +   
Sbjct: 67  RLDL-GLTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQAIMADS 120

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 58.1 bits (139), Expect = 4e-09
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 9/105 (8%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVL-FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
            L++ +++A+ L  K        Y  L     L  +T       +     W EHFEF   
Sbjct: 12  VLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66

Query: 322 DESTQ---HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVW 363
                   HL            +  +G   V +  L      + W
Sbjct: 67  PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQW 111

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 12/93 (12%)

Query: 436 DASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRV---VNDC 492
           +    RR   +  VL + +I A  LP          Y  L +       +T         
Sbjct: 2   NKDNSRR---VDNVLKLWIIEARELPPKK-----RYYCELCLD-DMLYARTTSKPRSASG 52

Query: 493 LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 525
               W + F+F     +  + +    D D   K
Sbjct: 53  DTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRK 85

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 53.8 bits (128), Expect = 1e-07
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVR----PLPEKTKKSKTI-NNDLNPIWNEHFE 317
            L V+++  + L   +    S     + V          ++++  I NN  NP W+  FE
Sbjct: 498 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 557

Query: 318 FIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
           F V       +   + D +    ++ IG + +    L+ G
Sbjct: 558 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG 597

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 438 SQKRREVIIRGVLSVTVILAENLPASDLMG--KADPYVVLTM---KKSETRNKTRVV-ND 491
           +  +        L V +I  + LP  +       DP V++ +    +     +T V+ N+
Sbjct: 487 ALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNN 546

Query: 492 CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSEALRLF 549
             NP W+  F+F V      ++   V D+D+  K             L  G   + L 
Sbjct: 547 GFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLL 604

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 428 TEAIELEKDASQKRREVIIR---------GVLSVTVILAENLPASDLMGKADPYVVLTMK 478
             A E   D  +K+RE   +         G L V VI A  L A    GK++PY  ++M 
Sbjct: 358 KAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMG 417

Query: 479 KSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF 523
                  TR + D LNP WN    F ++D   D+L   ++D D F
Sbjct: 418 SQSYT--TRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 50.4 bits (120), Expect = 9e-07
 Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 9/136 (6%)

Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
           +   +G L V +++A  L      GKS+PY  +    +  ++  ++TI + LNP WN + 
Sbjct: 382 KTSGIGRLMVHVIEATELKACKPNGKSNPYCEI---SMGSQSYTTRTIQDTLNPKWNFNC 438

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRD 375
           +F ++D     L + ++D +     + +G  ++ + ++    + K    + +   +V   
Sbjct: 439 QFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVP-- 496

Query: 376 TKYRGQVHLELLYCPF 391
               G+V +      F
Sbjct: 497 ---TGEVWVRFDLQLF 509

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%)

Query: 201 EK---KKLDFKLKVVGGDISTIPGLSDSIEATI 230
           EK   KKL   LK+   D  + P L  +I+AT+
Sbjct: 18  EKQALKKLQASLKLYADD--SAPAL--AIKATM 46

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 61/491 (12%), Positives = 128/491 (26%), Gaps = 161/491 (32%)

Query: 175 TGVFRLIFRPLVDEF-PGFAAVSYSLREKKKLDFK-----LKVV--GGDISTIPGLSDSI 226
           TG  +  ++ ++  F   F             D K      K +    +I  I    D++
Sbjct: 11  TGEHQYQYKDILSVFEDAF---------VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 227 EAT------------------IHDAIEDSITWPVRKI----------------------- 245
             T                  + + +  +  + +  I                       
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 246 -VPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLI-------GKSDPYAVL---FVRPL 294
              +    Y+   L+P   L   L++ +    K+++       GK+     +        
Sbjct: 122 DNQVFA-KYNVSRLQPYLKLRQALLELR--PAKNVLIDGVLGSGKT----WVALDVCLSY 174

Query: 295 PEKTK-----------KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343
             + K              +    L  +    ++      S       I        +EL
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 344 IGCAQVRLCELEPGK-----VKDVW-LKLVKDLDVQ-------RDTKYRGQVHLELLYCP 390
                 RL + +P +     + +V   K     ++        R  +    +        
Sbjct: 235 -----RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-SAATTTH 288

Query: 391 FGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTE--AI----ELEKD-------- 436
             +++  +    P+   + L K L    + L      T    +    E  +D        
Sbjct: 289 ISLDH-HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 437 ---ASQKRREVI-----------IRGVLSVTVILAE--NLPASDLM---GKADPYVVLTM 477
                 K   +I            R +     +     ++P   L           V+ +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 478 -----KKS--ETRNKTRVVNDCLNPIWNQTFDFVV----EDGLHDMLIA-----EVWDHD 521
                K S  E + K   ++     I +   +  V    E  LH  ++      + +D D
Sbjct: 408 VNKLHKYSLVEKQPKESTIS-----IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 522 TFGKRYLSRYF 532
                YL +YF
Sbjct: 463 DLIPPYLDQYF 473

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 53/423 (12%), Positives = 107/423 (25%), Gaps = 129/423 (30%)

Query: 37  TTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSS 96
           T +A          K     +F   W+   +      +   L+KL   ++   +     S
Sbjct: 164 TWVAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 97  VEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDAN------ 150
                       + S++     L    P    + ++ +    V        +A       
Sbjct: 221 SNI------KLRIHSIQAELRRLLKSKPYENCLLVLLN----V-------QNAKAWNAFN 263

Query: 151 -SSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKL 209
            S  IL + TR         +   F          L                 +     L
Sbjct: 264 LSCKIL-LTTR-------FKQVTDFLSAATTTHISLDHHSMTLT-------PDEVKSLLL 308

Query: 210 KVVGGDISTIPGLSDS--------IEATIHDAIEDSITWP----------VRKIVPIL-P 250
           K +      +P    +        I  +I D +     W           +   + +L P
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 251 GDYSEL--ELK--------PVGTLEV---------------KLVQAKGLTNKDLIGKSDP 285
            +Y ++   L         P   L +               KL +   L  K    K   
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQ--PKEST 425

Query: 286 YAV-----LFVRPLPEKTKKSKTI-----------NNDLNPIWNE---------HFEFIV 320
            ++          L  +    ++I           ++DL P + +         H + I 
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 321 EDESTQHLVVRIY-DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 379
             E    L   ++ D   ++        ++R           + L  ++ L       Y+
Sbjct: 486 HPERMT-LFRMVFLDFRFLE-------QKIRHDSTAWNASGSI-LNTLQQLK-----FYK 531

Query: 380 GQV 382
             +
Sbjct: 532 PYI 534

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B Length = 799

 Score = 44.6 bits (104), Expect = 8e-05
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 250 PGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-----EKTKKSKTI 304
           P     +++    TL + ++  + L+ +        Y  + +  LP         K    
Sbjct: 666 PFSVDRIDVVVATTLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPS 721

Query: 305 NNDLNPIWNEH-FEFI-VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
            N +NP+W E  F F  +       L V + ++     ++ +G   + +  L  G
Sbjct: 722 TNSINPVWKEEPFVFEKILMPELASLRVAVMEE----GNKFLGHRIIPINALNSG 772

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	549
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.85
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.85
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.85
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.84
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.83
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.83
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.83
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.82
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.82
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.8
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.79
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.79
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.79
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.78
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.78
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.78
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.75
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.75
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.75
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.75
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.74
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.74
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.74
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.74
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.74
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.74
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.74
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.73
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.73
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.72
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.72
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.72
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.7
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.7
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.7
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.7
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.69
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.69
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.69
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.69
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.69
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.69
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.68
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.68
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.68
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.68
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.67
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.67
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.67
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.67
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.67
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.67
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.66
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.66
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.66
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.66
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.66
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.66
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.65
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.65
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.64
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.64
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.64
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.64
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.64
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.64
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.63
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.63
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.6
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.59
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.58
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.56
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.55
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.52
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.52
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.48
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.42
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.41
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.4
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.38
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.37
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.33
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.32
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.26
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.12
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.12
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.11
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.07
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.99
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.96
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	98.95
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.95
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.91
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.91
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.41
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.23
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	92.09
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	91.24
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	89.79
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	87.58
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	87.44
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	82.89
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	80.1

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=1.5e-34  Score=285.66  Aligned_cols=224  Identities=29%  Similarity=0.481  Sum_probs=193.2

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEEC
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~  335 (549)
                      ....|.|.|+|++|++|+.+|..|.+||||++++.+...+.++|+++++++||+|||+|.|.+...  ....|.|+|||+
T Consensus        15 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~   94 (284)
T 2r83_A           15 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDF   94 (284)
T ss_dssp             ETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEEC
T ss_pred             ECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEEC
Confidence            346799999999999999999999999999999986656789999999999999999999998643  456999999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeecccCCcccCCCCCCCCcchHHHHhh
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLT  415 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  415 (549)
                      +.+++|++||++.++|.++..+...+.|++|.....  ......|+|++.+.|.|                         
T Consensus        95 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~--~~~~~~G~i~l~l~~~p-------------------------  147 (284)
T 2r83_A           95 DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK--EEQEKLGDICFSLRYVP-------------------------  147 (284)
T ss_dssp             CSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS--CCCCCCCEEEEEEEEET-------------------------
T ss_pred             CCCCCCceeEEEEEcchhcccCCcceeEEEeecccc--ccccccccEEEEEEecC-------------------------
Confidence            999899999999999999988888899999975321  12346799999999863                         


Q ss_pred             cccccccCCCCCchhhhhhhhhhhhccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCC
Q 008910          416 NGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDC  492 (549)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t  492 (549)
                                                    ..+.|.|.|++|+||+..+..|.+||||++++...   ..+++|+++++|
T Consensus       148 ------------------------------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t  197 (284)
T 2r83_A          148 ------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT  197 (284)
T ss_dssp             ------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC
T ss_pred             ------------------------------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCC
Confidence                                          23789999999999999999999999999998531   247899999999


Q ss_pred             CCCccccEEEEEEecCC--CCeEEEEEEECCCCCC-ceeEEEEEecccc
Q 008910          493 LNPIWNQTFDFVVEDGL--HDMLIAEVWDHDTFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       493 ~nP~wne~f~f~v~~~~--~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l  538 (549)
                      .||.|||+|.|.+....  ...|.|+|||++.+++ ++||++.|+++.+
T Consensus       198 ~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~  246 (284)
T 2r83_A          198 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  246 (284)
T ss_dssp             SSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             CCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC
Confidence            99999999999987442  3479999999999876 6999999999864

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=1.1e-33  Score=280.87  Aligned_cols=225  Identities=30%  Similarity=0.438  Sum_probs=188.7

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEEC
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~  335 (549)
                      ....|.|.|+|++|++|+.+|..|.+||||++++.+.+.+.++|+++++++||+|||+|.|.+...  ....|.|+|||+
T Consensus        16 ~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~   95 (296)
T 1dqv_A           16 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDF   95 (296)
T ss_dssp             CSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEEC
T ss_pred             eCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEc
Confidence            356799999999999999999999999999999976567889999999999999999999998643  245899999999


Q ss_pred             CCCCCCceeEEEEEE-CcccCC-CceeEEEEEccccccccCCCceeeEEEEEEEEeecccCCcccCCCCCCCCcchHHHH
Q 008910          336 EGIQSSELIGCAQVR-LCELEP-GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKV  413 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~-l~~l~~-~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  413 (549)
                      |.+++|++||++.++ +.++.. ......|+.|....   ......|+|++.+.|.|                       
T Consensus        96 d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~vsl~y~~-----------------------  149 (296)
T 1dqv_A           96 DRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG---SEKADLGELNFSLCYLP-----------------------  149 (296)
T ss_dssp             CSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS---SCCSCCCEEEEEEEEET-----------------------
T ss_pred             CCCCCCceEEEEEeccccccccCCccceeeecccccc---ccccccceEEEEEEecc-----------------------
Confidence            999999999999996 444433 34457899986432   23456799999999963                       


Q ss_pred             hhcccccccCCCCCchhhhhhhhhhhhccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---Cceeeeccccc
Q 008910          414 LTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVN  490 (549)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~  490 (549)
                                                      ..|.|.|+|++|+||+.++..|.+||||++++..   ...++||++++
T Consensus       150 --------------------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~  197 (296)
T 1dqv_A          150 --------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK  197 (296)
T ss_dssp             --------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCC
T ss_pred             --------------------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceec
Confidence                                            2378999999999999999999999999999852   23578999999


Q ss_pred             CCCCCccccEEEEEEecC--CCCeEEEEEEECCCCCC-ceeEEEEEecccccc
Q 008910          491 DCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-RYLSRYFQNRKTWLH  540 (549)
Q Consensus       491 ~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~  540 (549)
                      ++.||+|||.|.|.+...  ....|.|+|||++.+++ ++||++.|+++++-.
T Consensus       198 ~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~  250 (296)
T 1dqv_A          198 NTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP  250 (296)
T ss_dssp             SCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH
T ss_pred             CCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc
Confidence            999999999999998743  23479999999999876 699999999987643

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.3e-20  Score=165.09  Aligned_cols=127  Identities=29%  Similarity=0.481  Sum_probs=109.6

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC---CCCEEEEEEEECC
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDDE  336 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~  336 (549)
                      ..|.|.|+|++|++|+.++. |.+||||++++.   .++++|++++++.||+|||+|.|.+...   ....|.|+|||++
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d   80 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK---DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE   80 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS---SCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC---CEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence            46999999999999999998 999999999997   6789999999999999999999999754   3578999999999


Q ss_pred             CCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  391 (549)
                      ..++|++||++.+++.++..+...+.|+.+.+-.. .......|+|++++.|.|.
T Consensus        81 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~-~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           81 TIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             CSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEEC-TTCCEEEEEEEEEEEECCC
T ss_pred             CCCCCceEEEEEEEHHHhccCCCceeEEeeeeccC-CCCCCCCCEEEEEEEEECC
Confidence            99899999999999999988888899988332111 1233567999999999873

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.85  E-value=5.5e-21  Score=166.53  Aligned_cols=124  Identities=35%  Similarity=0.597  Sum_probs=110.9

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeC-CCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~  337 (549)
                      .+.|.|.|+|++|++|+.++..|.+||||++++.   .+.++|++++ ++.||+|||+|.|.+.+ ....|.|+|||++.
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~   82 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDV   82 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSS
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEEC---CccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCC
Confidence            4789999999999999999988999999999987   5678999998 89999999999999987 46799999999999


Q ss_pred             CCCCceeEEEEEECccc-CCCceeEEEEEccccccccCCCceeeEEEEEEEEeecc
Q 008910          338 IQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  392 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l-~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~  392 (549)
                      +++|++||++.+++.++ ..+.....|++|.+      ..+..|+|++++.|.|.+
T Consensus        83 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~------~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE------TTEEEEEEEEEEEEEECC
T ss_pred             CCCCceEEEEEEEHHHhccCCCCCcEEEEeec------CCccCEEEEEEEEEEeCC
Confidence            98999999999999998 55666789999962      457889999999999854

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.85  E-value=1.9e-20  Score=166.62  Aligned_cols=128  Identities=25%  Similarity=0.485  Sum_probs=103.4

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  335 (549)
                      ...|.|.|+|++|++|+.++..|.+||||++++.+...   +.++|++++++.||+|||+|.|.+... ...|.|+|||+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d~   95 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDE   95 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEEC
Confidence            56799999999999999999889999999999985332   578999999999999999999999764 56899999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCcee------EEEEEccccccccCCCceeeEEEEEEEEee
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVK------DVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~------~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      +..++|++||++.+++.++..+...      ..|+.|....   ...+..|+|++++.|.|
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS---TTCCCCSEEEEEEEECC
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc---CCCCcceEEEEEEEEeC
Confidence            9998999999999999998765432      5899996532   23467899999999975

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=1.6e-20  Score=161.29  Aligned_cols=120  Identities=27%  Similarity=0.525  Sum_probs=105.0

Q ss_pred             eeEEEEEEEEccccccc---CCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 008910          261 VGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~  337 (549)
                      .|.|.|+|++|++|+.+   +..|.+||||++++++.+.++++|+++++++||+|||+|.|.+.......|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58999999999999984   667899999999998544578999999999999999999999976667799999999998


Q ss_pred             CCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      . +|++||++.++|.++..+...+.|++|.+        ...|.|++++...
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~--------~~~g~i~~~le~~  124 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ--------VTEMVLEMSLEVA  124 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT--------TEEEEEEEEEECC
T ss_pred             C-CCceeEEEEEEHHHccCCCcEEEEEEcCC--------CceEEEEEEEEeC
Confidence            7 58999999999999999999999999942        4568888877654

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.83  E-value=1.7e-20  Score=165.78  Aligned_cols=117  Identities=22%  Similarity=0.335  Sum_probs=101.3

Q ss_pred             CceeEEEEEEEEcccccccCC----------CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKDL----------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL  328 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~----------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L  328 (549)
                      ...|.|+|+|++|++|+++|.          .|.+||||++.++  +.+..+|+++++|+||+|||+|.|.+.+  .+.|
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~--~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L  101 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD--QVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHL  101 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC--CEeeEEeeecCCCCCCccCcEEEEEcCC--CCEE
Confidence            467999999999999998873          2679999999996  2334799999999999999999999975  3589


Q ss_pred             EEEEEECCCCCCCceeEEEEEECcccCCC----ceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          329 VVRIYDDEGIQSSELIGCAQVRLCELEPG----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       329 ~i~v~d~~~~~~d~~lG~~~v~l~~l~~~----~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      .|+|||+|.+++|++||++.+++.++..+    ...+.|++|.          ..|+|++.++|.
T Consensus       102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~----------~~G~i~l~l~~~  156 (157)
T 2fk9_A          102 ELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE----------PEGKVFVVITLT  156 (157)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB----------SSCEEEEEEEEC
T ss_pred             EEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC----------CCcEEEEEEEEE
Confidence            99999999999999999999999998744    6789999984          269999999874

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=1.8e-20  Score=162.61  Aligned_cols=124  Identities=28%  Similarity=0.538  Sum_probs=108.7

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECC
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE  336 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~  336 (549)
                      +..+.|.|.|+|++|++|+.++..|.+||||++++.   .++++|+++++++||+|||+|.|.+.+. .+.|.|+|||++
T Consensus         8 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d   83 (133)
T 2ep6_A            8 DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDED   83 (133)
T ss_dssp             SCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEE
T ss_pred             ccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC---CEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECC
Confidence            346789999999999999999999999999999997   5688999999999999999999999865 568999999999


Q ss_pred             CCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      ..++|++||++.+++.++..+.  ..|++|....   ......|+|++++.|.
T Consensus        84 ~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~---~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           84 GDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD---LEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             TTEEEEECCBCEEEGGGCCSSC--CEECCCBCSC---TTSCCSSEEEEEEEEE
T ss_pred             CCCCCCeeEEEEEEHHHccCCC--ceEEEeecCC---CCCccceEEEEEEEEE
Confidence            9888999999999999997654  5899987432   1346789999999986

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.83  E-value=1e-19  Score=160.86  Aligned_cols=121  Identities=30%  Similarity=0.559  Sum_probs=106.3

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC-
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI-  338 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~-  338 (549)
                      ..|.|.|+|++|++|+.+|..|.+||||+++++   .+.++|+++++++||.|||+|.|.+..+ .+.|.|+|||++.. 
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG---KTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDI   90 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC---CEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCc
Confidence            469999999999999999999999999999996   6789999999999999999999999765 46899999999985 


Q ss_pred             ----------CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          339 ----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       339 ----------~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                                ++|++||++.+++.++  ....+.|++|.+..   ......|+|++++.|.
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~---~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRT---DKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSS---TTCCCCCEEEEEEEEE
T ss_pred             cccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCC---CCCCCceEEEEEEEEE
Confidence                      7899999999999998  34678999997532   2345679999999985

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.82  E-value=1.4e-19  Score=164.93  Aligned_cols=129  Identities=25%  Similarity=0.482  Sum_probs=101.8

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  335 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~  335 (549)
                      ...|.|+|+|++|++|+.++..|.+||||++++.....   ++++|+++++++||.|||+|.|.+... ...|.|+|||+
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~   83 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDE   83 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence            35799999999999999999999999999999984332   568999999999999999999999754 56899999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCcee-E-----EEEEccccccccCCCceeeEEEEEEEEeec
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVK-D-----VWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~-~-----~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  391 (549)
                      +.+++|++||++.++|.++..+... +     .|+.|....   ...+..|+|++++.|.|.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS---TTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC---CCCccCEEEEEEEEEEeC
Confidence            9998999999999999999765433 2     799997532   234578999999999986

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.82  E-value=7.3e-20  Score=159.31  Aligned_cols=117  Identities=20%  Similarity=0.339  Sum_probs=100.7

Q ss_pred             ceeEEEEEEEEcccccccCCCCC-----------CCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEE
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGK-----------SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL  328 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~-----------~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L  328 (549)
                      ..|.|+|+|++|++|+++|..++           +||||++.++  +....+|+++.+|+||+|||+|.|.+.+.  +.|
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~--~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L   79 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEEC--CeEeeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence            36999999999999998875444           9999999986  23347899999999999999999999765  689


Q ss_pred             EEEEEECCCCCCCceeEEEEEECcccCCC--ceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910          329 VVRIYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       329 ~i~v~d~~~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      .|+|||+|..++|++||++.+++.++..+  ...+.|+.|.          ..|+|++++.|.+
T Consensus        80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~i~l~l~~~~  133 (136)
T 1gmi_A           80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE----------PEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred             EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC----------CCeEEEEEEEEEe
Confidence            99999999999999999999999998764  3458999873          3699999999975

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.80  E-value=5.2e-19  Score=153.10  Aligned_cols=124  Identities=22%  Similarity=0.430  Sum_probs=102.3

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  340 (549)
                      ...|+|+|++|++|+++|..|.+||||++++.+. .+.++|+++++++||+|||+|.|.+....  .|.|+|||++..++
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~l~~~v~d~d~~~~   80 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKNTLDPKWNQHYDLYVGKTD--SITISVWNHKKIHK   80 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT-CCEEECCCCSSCSSCEEEEEEEEEEETTC--CEEEEEEEGGGTTS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC-CceEECCccCCCCCCCccCEEEEEeCCCC--EEEEEEEECCCCCC
Confidence            4789999999999999999999999999999632 47899999999999999999999997653  59999999998766


Q ss_pred             ---CceeEEEEEECccc-CCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          341 ---SELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       341 ---d~~lG~~~v~l~~l-~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                         |++||++.+++.++ ........|+.|..... ....+..|+|++++.+
T Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~-~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP-SDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSST-TCCCCCCSEEEEEEEE
T ss_pred             CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCC-CCCCceeEEEEEEEEc
Confidence               89999999999988 33333457888875321 2233568999999875

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.79  E-value=4e-19  Score=156.10  Aligned_cols=111  Identities=31%  Similarity=0.488  Sum_probs=100.2

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEEC
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~  335 (549)
                      ....+.|.|+|++|++|+.++..+.+||||++++.+.+.++++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        30 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  109 (143)
T 3f04_A           30 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF  109 (143)
T ss_dssp             ETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred             eCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeC
Confidence            356799999999999999999889999999999976667789999999999999999999998643  457899999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      +.+++|++||++.++|.++..+...+.|++|.+
T Consensus       110 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          110 DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            999999999999999999998888999999863

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.79  E-value=5.7e-19  Score=156.77  Aligned_cols=111  Identities=31%  Similarity=0.488  Sum_probs=100.0

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEEC
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~  335 (549)
                      ....+.|.|+|++|++|+.++..+.+||||++++.+.+.++++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        38 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  117 (152)
T 1rsy_A           38 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF  117 (152)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred             eCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEEC
Confidence            356799999999999999999999999999999986656789999999999999999999988643  357899999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      +.+++|++||++.+++.++..+...+.|++|..
T Consensus       118 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          118 DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             CSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            999899999999999999988888899999863

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=5.1e-19  Score=154.99  Aligned_cols=111  Identities=26%  Similarity=0.457  Sum_probs=99.1

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec---CCCCEEEEEEEEC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYDD  335 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~d~  335 (549)
                      ...+.|.|+|++|++|+.++..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+..   .....|.|+|||+
T Consensus        23 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           23 FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            4679999999999999999989999999999998655678999999999999999999998532   2356899999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEcccc
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (549)
                      +.+++|++||++.+++.++..+...+.|++|.+.
T Consensus       103 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A          103 DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             CSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             CCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            9998999999999999999888888999999753

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.78  E-value=1.5e-19  Score=160.40  Aligned_cols=110  Identities=16%  Similarity=0.211  Sum_probs=96.2

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC---CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  332 (549)
                      ....|.|.|+|++|++|+++|..|.+||||++++.+..   ..++||+++++|+||+|||+|.|.+...  ....|.|+|
T Consensus        39 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V  118 (155)
T 2z0u_A           39 DEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDV  118 (155)
T ss_dssp             ETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEE
T ss_pred             cCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEE
Confidence            35679999999999999999999999999999998522   2379999999999999999999998642  246899999


Q ss_pred             EECCCCCCCceeEEEEEECcccC-CCceeEEEEEcc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELE-PGKVKDVWLKLV  367 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~-~~~~~~~w~~L~  367 (549)
                      ||+|..+++++||++.++|.++. .+.....|++|.
T Consensus       119 ~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          119 CTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             EEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             EECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            99999999999999999999995 366788999985

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.78  E-value=1.2e-18  Score=151.04  Aligned_cols=108  Identities=20%  Similarity=0.362  Sum_probs=95.5

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC--CCCeEEeeeeCCCCCCeeccEEEEE-EecC--CCCEEEEEEEE
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIYD  334 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~v~d  334 (549)
                      ..|.|.|+|++|++|+. +..|.+||||++++.+.  ...+++|+++++++||+|||+|.|. +...  ....|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            56899999999999997 77889999999999754  3467899999999999999999999 7532  45699999999


Q ss_pred             CCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      ++.+++|++||++.++|.++..+...+.|++|.+
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  130 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTA  130 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence            9999999999999999999988888899999964

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=3e-18  Score=154.91  Aligned_cols=125  Identities=25%  Similarity=0.325  Sum_probs=103.4

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  338 (549)
                      ...+.|.|+|++|++|+..+..+.+||||+++++   .++++|+++++++||+|||+|.|.+.  ..+.|.|+|||++.+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~---~~~~kT~v~~~tlnP~Wne~f~f~v~--~~~~L~~~V~D~d~~  107 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQTL  107 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECCSS
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEEC---CEEeEccccCCCCCCeECCEEEEEeC--CCCEEEEEEEECCCC
Confidence            3568999999999999944434559999999997   48899999999999999999999985  367999999999999


Q ss_pred             CCCceeEEEEEECcccCCC---ce--eEEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910          339 QSSELIGCAQVRLCELEPG---KV--KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~---~~--~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  391 (549)
                      ++|++||++.+++.++..+   ..  ...|+.|....   ...+..|+|++.+.|.+.
T Consensus       108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~---~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK---EPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESS---CTTSEEEEEEEEEESEEC
T ss_pred             CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCC---CCCcccEEEEEEEeeeec
Confidence            9999999999999998532   22  26799997641   234678999999999875

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=3e-18  Score=147.68  Aligned_cols=109  Identities=23%  Similarity=0.402  Sum_probs=89.8

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEec---CCCCEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRI  332 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v  332 (549)
                      ....|.|.|+|++|++|+.++..|.+||||++++.+.+  ..+++|++++++.||+|||+|.|.+..   .....|.|+|
T Consensus        14 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V   93 (129)
T 2bwq_A           14 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL   93 (129)
T ss_dssp             ETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred             ccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEE
Confidence            34569999999999999999999999999999997533  468999999999999999999998532   2356899999


Q ss_pred             EECCCCCC--CceeEEEEEECcccCCCceeEEEEEcc
Q 008910          333 YDDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       333 ~d~~~~~~--d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      ||++..++  +++||++.+++.++.... .+.|++|+
T Consensus        94 ~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           94 WDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             EEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             EECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            99999876  999999999999987654 78999873

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.75  E-value=7.8e-18  Score=146.83  Aligned_cols=111  Identities=20%  Similarity=0.303  Sum_probs=95.5

Q ss_pred             cCceeEEEEEEEEcccccccCCC-CCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEE-EecC--CCCEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIY  333 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~v~  333 (549)
                      ....+.|.|+|++|++|+.+|.. +.+||||++++.+.+.++++|+++++++||+|||+|.|. +...  ....|.|+||
T Consensus        18 ~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~   97 (138)
T 1ugk_A           18 NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTIL   97 (138)
T ss_dssp             EGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEE
T ss_pred             ECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEE
Confidence            35679999999999999999985 899999999998655688999999999999999999996 5432  3468999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCce-eEEEEEccc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVK  368 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~-~~~w~~L~~  368 (549)
                      |++.+++|++||++.++|.++..+.. ...|++|.+
T Consensus        98 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           98 SFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             EECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             ECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            99999899999999999999977644 456788864

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.75  E-value=2e-18  Score=152.47  Aligned_cols=112  Identities=17%  Similarity=0.336  Sum_probs=97.8

Q ss_pred             cCceeEEEEEEEEcccccccC-CCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  332 (549)
                      ....|.|.|+|++|++|+.++ ..+.+||||++++.+...  .+++|+++++++||+|||+|.|.+...  ....|.|+|
T Consensus        19 ~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V   98 (148)
T 3fdw_A           19 EQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSV   98 (148)
T ss_dssp             ETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEE
T ss_pred             eCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEE
Confidence            356799999999999999988 578999999999985443  478999999999999999999998654  345799999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEcccc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (549)
                      ||++..++|++||++.++|.++..+...+.|++|.+.
T Consensus        99 ~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  135 (148)
T 3fdw_A           99 WHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK  135 (148)
T ss_dssp             EEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred             EECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence            9999998999999999999999777778899999754

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.75  E-value=6.1e-18  Score=148.31  Aligned_cols=110  Identities=27%  Similarity=0.519  Sum_probs=96.9

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEE-EecC--CCCEEEEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIY  333 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~v~  333 (549)
                      ...|.|.|+|++|++|+.++..|.+||||++++.+..  ...++|++++++.||+|||+|.|. +...  ....|.|+||
T Consensus        26 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            5679999999999999999988999999999998432  368999999999999999999998 5422  2358999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      |++.+++|++||++.+++.++..+.....|++|.+
T Consensus       106 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          106 DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            99999899999999999999998888899999864

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=3e-18  Score=150.24  Aligned_cols=110  Identities=25%  Similarity=0.384  Sum_probs=95.0

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~  333 (549)
                      ....+.|.|+|++|++|+.++..| +||||++++.+.+.  .+++|+++++++||+|||+|.|.+...  ....|.|+||
T Consensus        20 ~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~   98 (142)
T 2dmg_A           20 SSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVK   98 (142)
T ss_dssp             ETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEE
T ss_pred             eCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEE
Confidence            346799999999999999999889 99999999975443  679999999999999999999998532  3358999999


Q ss_pred             ECCCCCC--CceeEEEEEECcccCCCceeEEEEEccc
Q 008910          334 DDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       334 d~~~~~~--d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      |++.++.  |++||++.+++.++..+...+.|+.|.+
T Consensus        99 d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~  135 (142)
T 2dmg_A           99 NSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE  135 (142)
T ss_dssp             ECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred             ECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence            9998753  5799999999999987777889999975

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=8.9e-18  Score=146.37  Aligned_cols=107  Identities=16%  Similarity=0.149  Sum_probs=93.0

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC-CCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEEC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~  335 (549)
                      ...+.|.|+|++|+   ++|..|.+||||++++.+. ....++|+++++++||+|||+|.|.+...  ....|.|+|||+
T Consensus        23 ~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T 1wfm_A           23 CQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEEC
Confidence            46799999999999   3677899999999999753 33468999999999999999999998643  346899999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      |.+++|++||++.++|.++..+...+.|+.|.+
T Consensus       100 d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A          100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             CCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            999999999999999999977777889999965

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.74  E-value=4.4e-18  Score=150.99  Aligned_cols=103  Identities=15%  Similarity=0.108  Sum_probs=87.8

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---C-ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---S-ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~-~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|+||+.++..|.+||||++++..   . ..++||+++++|+||+|||+|.|.+...  ....|.|+|||+
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~  121 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT  121 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence            478999999999999999999999999999964   1 2478999999999999999999998642  346899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccccccceecC
Q 008910          521 DTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +.+++ ++||++.+++.++...+.....||
T Consensus       122 d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~  151 (155)
T 2z0u_A          122 DRSHLEECLGGAQISLAEVCRSGERSTRWY  151 (155)
T ss_dssp             CTTSCEEEEEEEEEECTTSCTTCCCEEEEE
T ss_pred             CCCCCCcEEEEEEEEHHHccCCCCccccce
Confidence            99877 699999999999965455555564

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=3.4e-18  Score=150.88  Aligned_cols=112  Identities=21%  Similarity=0.367  Sum_probs=95.9

Q ss_pred             ccCceeEEEEEEEEccccccc-CC------CCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNK-DL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQH  327 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~-d~------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~  327 (549)
                      +....|.|.|+|++|++|+.+ +.      .+.+||||++++.+...++++|+++++++||+|||+|.|.+...  ....
T Consensus        21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~  100 (147)
T 2enp_A           21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT  100 (147)
T ss_dssp             EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred             EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence            335679999999999999984 43      35899999999986556789999999999999999999998642  2358


Q ss_pred             EEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       328 L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      |.|+|||++.+++|++||++.++|.++..+.....|+.|.+
T Consensus       101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  141 (147)
T 2enp_A          101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP  141 (147)
T ss_dssp             EEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred             EEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence            99999999999999999999999999987777788999864

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.74  E-value=1.1e-17  Score=147.84  Aligned_cols=108  Identities=35%  Similarity=0.551  Sum_probs=95.0

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC-CCCEEEEEEEECCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEG  337 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~~  337 (549)
                      .|.|.|+|++|++|+.++..+.+||||++++.+..  ..+++|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            48899999999999999989999999999998532  4578999999999999999999998753 23589999999999


Q ss_pred             CCCCceeEEEEEECcccCCCceeEEEEEcccc
Q 008910          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (549)
                      .++|++||++.+++.++..+ ..+.|++|...
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~  140 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ  140 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred             CCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence            98999999999999999776 47899999653

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=4.4e-18  Score=149.00  Aligned_cols=110  Identities=23%  Similarity=0.413  Sum_probs=94.7

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC--CCCeEEeeeeCCCCCCeeccEEEEEEec---CCCCEEEEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  333 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~  333 (549)
                      ...+.|.|+|++|++|+.++..+.+||||++++.+.  ..++++|+++++++||+|||+|.|.+..   .....|.|+||
T Consensus        18 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~   97 (141)
T 1v27_A           18 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   97 (141)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred             CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence            456999999999999999999999999999998643  2567899999999999999999998532   23468999999


Q ss_pred             ECCCCCC--CceeEEEEEECcccCCCceeEEEEEcccc
Q 008910          334 DDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (549)
Q Consensus       334 d~~~~~~--d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (549)
                      |++..++  +++||++.+++.++.... ...|++|...
T Consensus        98 d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~  134 (141)
T 1v27_A           98 DQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH  134 (141)
T ss_dssp             EBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred             ECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence            9999876  999999999999986654 7899999753

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.73  E-value=9.7e-18  Score=151.73  Aligned_cols=109  Identities=25%  Similarity=0.400  Sum_probs=95.5

Q ss_pred             ceeEEEEEEEEcccccccCC-CCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEE-EC
Q 008910          260 PVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DD  335 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~-d~  335 (549)
                      ..|.|.|+|++|++|+.+|. .|.+||||++++.+.+.  .+++|+++++++||+|||+|.|.+.. ....|.|+|| |+
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~  106 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY  106 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence            46899999999999999985 69999999999985432  37899999999999999999999854 4578999999 99


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEcccc
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (549)
                      +.+++|++||++.++|.++..+...+.|++|.+.
T Consensus       107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            9999999999999999999888888999999754

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.73  E-value=2e-17  Score=146.83  Aligned_cols=112  Identities=27%  Similarity=0.470  Sum_probs=95.3

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC--CCCeEEeeeeCCCCCCeeccEEEEEEecC-CCCEEEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIY  333 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~  333 (549)
                      +....|.|.|+|++|++|+.++ .|.+||||++++.+.  ...+++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus        22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~  100 (153)
T 3fbk_A           22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVW  100 (153)
T ss_dssp             EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEE
Confidence            3457799999999999999998 699999999999743  24579999999999999999999998422 2346999999


Q ss_pred             ECCCCCC-CceeEEEEEECcccCC-CceeEEEEEcccc
Q 008910          334 DDEGIQS-SELIGCAQVRLCELEP-GKVKDVWLKLVKD  369 (549)
Q Consensus       334 d~~~~~~-d~~lG~~~v~l~~l~~-~~~~~~w~~L~~~  369 (549)
                      |++..++ |++||++.+++.++.. +.....|+.|.+.
T Consensus       101 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          101 NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             ECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             eCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            9998876 8999999999999974 7778899999764

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=3.4e-17  Score=140.98  Aligned_cols=101  Identities=26%  Similarity=0.428  Sum_probs=82.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEe---cCCCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++..   ...+++|+++++|.||+|||+|.|.+.   +.....|.|+|||+
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~   96 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   96 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence            488999999999999999999999999999832   246889999999999999999999953   22456899999999


Q ss_pred             CCCC---CceeEEEEEeccccccccccceecC
Q 008910          521 DTFG---KRYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       521 ~~~~---~d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +..+   +++||++.+++.++..++  ..+||
T Consensus        97 d~~~~~~~~~lG~~~i~l~~l~~~~--~~~W~  126 (129)
T 2bwq_A           97 ARVREEESEFLGEILIELETALLDD--EPHWY  126 (129)
T ss_dssp             -------CEEEEEEEEEGGGCCCSS--CEEEE
T ss_pred             CcCcCcCCceeEEEEEEccccCCCc--CCccE
Confidence            9887   469999999999997654  45554

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=2.2e-18  Score=151.11  Aligned_cols=108  Identities=23%  Similarity=0.453  Sum_probs=94.1

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC-----------CeEEeeeeCCCCCCeeccEEEEE-Eec--CCCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE-----------KTKKSKTINNDLNPIWNEHFEFI-VED--ESTQ  326 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~kT~~~~~t~nP~w~e~f~f~-v~~--~~~~  326 (549)
                      .|.|.|+|++|++|+.+|..|.+||||++++.+...           .+++|+++++++||+|||+|.|. +..  ....
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            589999999999999999999999999999984332           25789999999999999999997 532  2456


Q ss_pred             EEEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          327 HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       327 ~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      .|.|+|||++..++|++||++.+++.++..+.....|++|.+
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  138 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence            999999999999899999999999999877667789999964

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.72  E-value=4.3e-17  Score=145.75  Aligned_cols=111  Identities=32%  Similarity=0.456  Sum_probs=94.5

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~  333 (549)
                      .+..|.|.|+|++|++|+.+|..|.+||||++++.+.+.  .+++|+++++++||+|||+|.|.+...  ....|.|+||
T Consensus        21 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~  100 (159)
T 1tjx_A           21 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVL  100 (159)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred             cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEE
Confidence            356799999999999999999999999999999985432  468999999999999999999998643  2458999999


Q ss_pred             ECCCCCCCceeEEEEEECccc------------CCCceeEEEEEccc
Q 008910          334 DDEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVK  368 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l------------~~~~~~~~w~~L~~  368 (549)
                      |++.+++|++||++.+++..+            .++.....|+.|..
T Consensus       101 d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A          101 DYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             ECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             ECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            999998999999999999853            34556778988865

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.70  E-value=5.4e-17  Score=141.43  Aligned_cols=97  Identities=25%  Similarity=0.458  Sum_probs=85.0

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC--CeEEeeeeCCCCCCeeccEEEEEEecCC--CCEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIY  333 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~  333 (549)
                      ....|.|.|+|++|++|+.++..|.+||||++++.+.+.  .+++|++++++.||+|||+|.|.+....  ...|.|+||
T Consensus        12 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~   91 (138)
T 3n5a_A           12 NPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVM   91 (138)
T ss_dssp             ETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEE
T ss_pred             cCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEE
Confidence            346799999999999999999999999999999985332  4688999999999999999999986542  358999999


Q ss_pred             ECCCCCCCceeEEEEEECccc
Q 008910          334 DDEGIQSSELIGCAQVRLCEL  354 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l  354 (549)
                      |++..++|++||++.+++.++
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           92 DKDKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             ECCSSSCCEEEEEEEESSSSC
T ss_pred             ECCCCCCCcEEEEEEEccccC
Confidence            999998999999999999864

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.70  E-value=2.1e-16  Score=137.70  Aligned_cols=96  Identities=24%  Similarity=0.353  Sum_probs=82.5

Q ss_pred             ccEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEE-EecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFV-VEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~-g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~-v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+.. |.+||||++++.. ...+++|+++++|.||+|||+|.|. +...  ....|.|+|||++
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d  100 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECC
Confidence            48899999999999999985 8899999999964 2468899999999999999999996 6432  3468999999999


Q ss_pred             CCCC-ceeEEEEEecccccccc
Q 008910          522 TFGK-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~  542 (549)
                      .+++ ++||++.+++.++....
T Consensus       101 ~~~~~~~lG~~~i~l~~l~~~~  122 (138)
T 1ugk_A          101 RFSRDDIIGEVLIPLSGIELSE  122 (138)
T ss_dssp             SSCCCCCCEEEEEECTTCCCTT
T ss_pred             CCCCCcEEEEEEEehhHccCCC
Confidence            8876 69999999999996543

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.70  E-value=1.8e-16  Score=140.54  Aligned_cols=102  Identities=29%  Similarity=0.427  Sum_probs=85.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~  523 (549)
                      .+.|.|+|++|+||+..+..+.+||||++++.. ...+++|++++++.||+|||+|.|.+...  ....|.|+|||++.+
T Consensus        41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  120 (152)
T 1rsy_A           41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  120 (152)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCC
Confidence            478999999999999999889999999999953 23678999999999999999999988643  357899999999988


Q ss_pred             CC-ceeEEEEEeccccccccccceecC
Q 008910          524 GK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      ++ ++||++.+++.++.. +.....||
T Consensus       121 ~~~~~iG~~~i~l~~l~~-~~~~~~W~  146 (152)
T 1rsy_A          121 SKHDIIGEFKVPMNTVDF-GHVTEEWR  146 (152)
T ss_dssp             SCCEEEEEEEEEGGGCCC-SSCEEEEE
T ss_pred             CCCcEEEEEEEEchhccC-CCCcceEE
Confidence            75 699999999999844 33444453

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.70  E-value=6.2e-17  Score=141.65  Aligned_cols=101  Identities=26%  Similarity=0.436  Sum_probs=84.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEE-e--cCCCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVV-E--DGLHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v-~--~~~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|++|+..+..|.+||||++++..   ...+++|+++++|.||+|||+|.|.+ .  +.....|.|+|||+
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~   99 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   99 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence            378999999999999999999999999999832   24688999999999999999999994 3  22346899999999


Q ss_pred             CCCC---CceeEEEEEeccccccccccceecC
Q 008910          521 DTFG---KRYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       521 ~~~~---~d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +..+   +++||++.|++.++..++  ...||
T Consensus       100 d~~~~~~~~~lG~~~i~l~~l~~~~--~~~W~  129 (141)
T 1v27_A          100 ARVREEESEFLGEILIELETALLDD--EPHWY  129 (141)
T ss_dssp             CSSSSCCBCCCEEEEEEGGGCCCSS--EEEEE
T ss_pred             CCCcCCCCceEEEEEEEccccCCCC--CCceE
Confidence            9887   469999999999986644  44443

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.69  E-value=8.5e-17  Score=142.79  Aligned_cols=103  Identities=23%  Similarity=0.406  Sum_probs=84.1

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHD  521 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~  521 (549)
                      ..+.|.|+|++|+||+..+ .|.+||||++++..   ...+++|+++++|.||+|||+|.|.+... ....|.|+|||++
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  103 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA  103 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC
Confidence            3488999999999999998 68999999999943   23578999999999999999999998422 3346999999999


Q ss_pred             CCCC--ceeEEEEEeccccccccccceecC
Q 008910          522 TFGK--RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       522 ~~~~--d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      ..++  ++||++.+++.++...+.....||
T Consensus       104 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~  133 (153)
T 3fbk_A          104 SQSRQSGLIGCMSFGVKSLLTPDKEISGWY  133 (153)
T ss_dssp             SSGGGCEEEEEEEEEHHHHTC--CCEEEEE
T ss_pred             CCCCCCcEEEEEEEEHHHhcCCCCccccEE
Confidence            8754  699999999999976445555554

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.69  E-value=1.5e-16  Score=143.25  Aligned_cols=97  Identities=25%  Similarity=0.412  Sum_probs=85.8

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~  333 (549)
                      .+..|.|.|+|++|++|+.++..|.+||||++++.+..  ..+++|+++++++||+|||+|.|.+...  ....|.|+||
T Consensus        33 ~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~  112 (166)
T 2cm5_A           33 STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVW  112 (166)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred             ECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEE
Confidence            35679999999999999999999999999999998432  3689999999999999999999998643  3558999999


Q ss_pred             ECCCCCCCceeEEEEEECccc
Q 008910          334 DDEGIQSSELIGCAQVRLCEL  354 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l  354 (549)
                      |++.+++|++||++.+++.++
T Consensus       113 d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          113 DYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             ECCSSSCCEEEEEEEEETTCC
T ss_pred             ECCCCCCCcEEEeEEEecccC
Confidence            999998999999999999875

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1.7e-16  Score=138.82  Aligned_cols=101  Identities=26%  Similarity=0.364  Sum_probs=84.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEec---CCCCeEEEEEEECCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDHDT  522 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~l~i~V~d~~~  522 (549)
                      .+.|.|+|++|++|+..+..|.+||||++++.. ...+++|++++++.||+|||+|.|.+..   .....|.|+|||++.
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~  104 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR  104 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC
Confidence            378999999999999999889999999999953 2467899999999999999999998531   235689999999999


Q ss_pred             CCC-ceeEEEEEeccccccccccceec
Q 008910          523 FGK-RYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      +++ ++||++.+++.++.... ....|
T Consensus       105 ~~~~~~iG~~~i~l~~l~~~~-~~~~W  130 (141)
T 2d8k_A          105 FSRNDPIGEVSIPLNKVDLTQ-MQTFW  130 (141)
T ss_dssp             SSSCEEEEEEEEETTTSCTTS-CEEEE
T ss_pred             CCCCcEEEEEEEEhhhhcCCC-CccEE
Confidence            876 69999999999996543 33344

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=1.8e-16  Score=138.85  Aligned_cols=101  Identities=28%  Similarity=0.310  Sum_probs=83.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..| +||||++++..   ...+++|+++++|.||+|||+|.|.+...  ....|.|+|||++
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  101 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSG  101 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECC
Confidence            478999999999999999888 99999999953   23578999999999999999999998532  3358999999999


Q ss_pred             CCC--C-ceeEEEEEeccccccccccceecC
Q 008910          522 TFG--K-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       522 ~~~--~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      .++  + ++||++.|++.++.... ....||
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~~~~~-~~~~W~  131 (142)
T 2dmg_A          102 GFLSKDKGLLGKVLVALASEELAK-GWTQWY  131 (142)
T ss_dssp             CSSCCSCCCCEEEEEECCCSTTTT-CBCCBC
T ss_pred             CccccCCcEEEEEEEecccccccc-ccccee
Confidence            875  3 59999999999985433 344443

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.69  E-value=2.4e-16  Score=138.04  Aligned_cols=97  Identities=27%  Similarity=0.462  Sum_probs=83.8

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEE-EecC--CCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV-VEDG--LHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~-v~~~--~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|++|+..+..|.+||||++++..   ...+++|++++++.||+|||+|.|. +...  ....|.|+|||+
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  107 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE  107 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEEC
Confidence            488999999999999999889999999999974   2368899999999999999999998 5421  236899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccccc
Q 008910          521 DTFGK-RYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~  543 (549)
                      +.+++ ++||++.+++.++...+.
T Consensus       108 d~~~~d~~iG~~~i~l~~l~~~~~  131 (142)
T 2chd_A          108 DKFGHNEFIGETRFSLKKLKANQR  131 (142)
T ss_dssp             CTTSCEEEEEEEEEEGGGCCTTCC
T ss_pred             CCCCCCcEEEEEEEEHHHcCCCCc
Confidence            99877 699999999999876543

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.69  E-value=1.3e-16  Score=141.65  Aligned_cols=108  Identities=24%  Similarity=0.343  Sum_probs=84.9

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~  333 (549)
                      .+..|.|.|+|++|++|+.++..|.+||||++++.+.+..  +++|+++++++||+|||+|.|.+...  ....|.|+||
T Consensus        26 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~  105 (153)
T 1w15_A           26 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL  105 (153)
T ss_dssp             ETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred             cCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEE
Confidence            3567999999999999999998899999999999754332  67999999999999999999998754  2368999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      |++.+++|++||++.+++.+  .+...+.|+.|.
T Consensus       106 d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~  137 (153)
T 1w15_A          106 DSERGSRNEVIGRLVLGATA--EGSGGGHWKEIC  137 (153)
T ss_dssp             ECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHH
T ss_pred             eCCCCCCCcEEEEEEECCCC--CchHHHHHHHHH
Confidence            99999899999999999987  333445565554

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.68  E-value=1.8e-16  Score=139.97  Aligned_cols=95  Identities=24%  Similarity=0.484  Sum_probs=82.1

Q ss_pred             ccEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|+||+..+ ..|.+||||++++...   ..+++|+++++|.||+|||+|.|.+...  ....|.|+|||+
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~  101 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH  101 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence            488999999999999887 5788999999999632   2478999999999999999999998753  345799999999


Q ss_pred             CCCCC-ceeEEEEEeccccccc
Q 008910          521 DTFGK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~  541 (549)
                      +..++ ++||++.+++.++...
T Consensus       102 d~~~~~~~iG~~~i~l~~l~~~  123 (148)
T 3fdw_A          102 GRFGRNTFLGEAEIQMDSWKLD  123 (148)
T ss_dssp             CGGGCEEEEEEEEEEHHHHHHH
T ss_pred             CCCcCCcEEEEEEEEccccccc
Confidence            98876 6999999999998544

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.68  E-value=2.3e-16  Score=138.31  Aligned_cols=101  Identities=29%  Similarity=0.420  Sum_probs=85.1

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~  523 (549)
                      .+.|.|+|++|++|+..+..+.+||||++++.. ..++++|+++++|.||+|||+|.|.+...  ....|.|+|||++.+
T Consensus        33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  112 (143)
T 3f04_A           33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  112 (143)
T ss_dssp             TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCC
Confidence            488999999999999999888999999999942 23688999999999999999999998633  447899999999998


Q ss_pred             CC-ceeEEEEEeccccccccccceec
Q 008910          524 GK-RYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      ++ ++||++.+++.++... .....|
T Consensus       113 ~~~~~iG~~~i~l~~l~~~-~~~~~W  137 (143)
T 3f04_A          113 SKHDIIGEFKVPMNTVDFG-HVTEEW  137 (143)
T ss_dssp             SCCEEEEEEEEEGGGCCTT-SCEEEE
T ss_pred             CCCceEEEEEEEHHHccCC-CCcceE
Confidence            76 6999999999998543 333344

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.68  E-value=1e-16  Score=137.38  Aligned_cols=101  Identities=24%  Similarity=0.434  Sum_probs=85.9

Q ss_pred             ccEEEEEEEEeecCCCC---CCCCCCCcEEEEEEeCC-ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCC
Q 008910          447 RGVLSVTVILAENLPAS---DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT  522 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~---~~~g~~dpyv~v~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~  522 (549)
                      .|.|.|+|++|++|+.+   +..|.+||||++++++. ..+++|++++++.||+|||+|.|.+..+....|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            48899999999999984   55688999999999753 368899999999999999999999976667799999999998


Q ss_pred             CCCceeEEEEEeccccccccccceec
Q 008910          523 FGKRYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       523 ~~~d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      .++++||++.+++.++.. +.....|
T Consensus        82 ~~~~~iG~~~i~l~~l~~-~~~~~~~  106 (126)
T 1rlw_A           82 VMDETLGTATFTVSSMKV-GEKKEVP  106 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCT-TCEEEEE
T ss_pred             CCCceeEEEEEEHHHccC-CCcEEEE
Confidence            877799999999999854 3333333

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.67  E-value=5.4e-16  Score=138.57  Aligned_cols=92  Identities=29%  Similarity=0.487  Sum_probs=80.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++...   ..+++|+++++|.||.|||+|.|.+...  ....|.|+|||++
T Consensus        24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d  103 (159)
T 1tjx_A           24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (159)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECC
Confidence            4889999999999999998899999999999642   2478999999999999999999998643  2457999999999


Q ss_pred             CCCC-ceeEEEEEecccc
Q 008910          522 TFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l  538 (549)
                      .+++ ++||++.|++..+
T Consensus       104 ~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A          104 KIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             SSSCCEEEEEEEEETTCC
T ss_pred             CCCCCceEEEEEECCCCC
Confidence            9875 6999999999853

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.67  E-value=3.6e-16  Score=138.11  Aligned_cols=94  Identities=33%  Similarity=0.514  Sum_probs=83.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECCCC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF  523 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~~~  523 (549)
                      +.|.|+|++|++|+..+..+.+||||++++..   ...++||++++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus        31 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~  110 (149)
T 1a25_A           31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT  110 (149)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCC
Confidence            67999999999999999889999999999974   24678999999999999999999998753 245899999999998


Q ss_pred             CC-ceeEEEEEeccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~  541 (549)
                      ++ ++||++.|++.++...
T Consensus       111 ~~~~~iG~~~i~l~~l~~~  129 (149)
T 1a25_A          111 SRNDFMGSLSFGISELQKA  129 (149)
T ss_dssp             SCCEEEEEEEEEHHHHTTC
T ss_pred             CCCCEEEEEEEEHHHhCcC
Confidence            75 6999999999998764

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.67  E-value=2.3e-16  Score=140.00  Aligned_cols=91  Identities=25%  Similarity=0.363  Sum_probs=74.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc---eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++....   .++||+++++|+||+|||+|.|.+...  ....|.|+|||++
T Consensus        29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d  108 (153)
T 1w15_A           29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE  108 (153)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence            48899999999999999988999999999995322   367999999999999999999998754  2358999999999


Q ss_pred             CCCC-ceeEEEEEeccc
Q 008910          522 TFGK-RYLSRYFQNRKT  537 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~  537 (549)
                      .+++ ++||++.|++.+
T Consensus       109 ~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          109 RGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             TTSCCEEEEEEEESTTC
T ss_pred             CCCCCcEEEEEEECCCC
Confidence            8876 699999999988

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.67  E-value=4.9e-16  Score=135.33  Aligned_cols=92  Identities=28%  Similarity=0.451  Sum_probs=80.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecCC--CCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++...   ..+++|++++++.||.|||+|.|.+....  ...|.|+|||++
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~   94 (138)
T 3n5a_A           15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD   94 (138)
T ss_dssp             TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred             CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence            4889999999999999998899999999999642   24789999999999999999999986432  357999999999


Q ss_pred             CCCC-ceeEEEEEecccc
Q 008910          522 TFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l  538 (549)
                      ..++ ++||++.++++++
T Consensus        95 ~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           95 KLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             SSSCCEEEEEEEESSSSC
T ss_pred             CCCCCcEEEEEEEccccC
Confidence            8876 6999999999864

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.67  E-value=4.5e-16  Score=131.62  Aligned_cols=119  Identities=20%  Similarity=0.275  Sum_probs=101.7

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeC-CCCCCeeccEEEEEEecC--CCCEEEEEEEECCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEG  337 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~  337 (549)
                      ...|+|+|.+|.+|+     |++|||+++.+.   +.+++|++++ ++.||+|||.|.|++..+  ....|.++|||+++
T Consensus        20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~FR---g~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~   91 (144)
T 3l9b_A           20 HMALIVHLKTVSELR-----GRADRIAKVTFR---GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK   91 (144)
T ss_dssp             CEEEEEEEEEEESCC-----SCEEEEEEEEET---TEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred             cEEEEEEEEEecCCC-----CCCCCeEEEEEe---ccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence            357999999999998     689999999996   7899999997 799999999999999764  45689999999999


Q ss_pred             CCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  391 (549)
                      ++++++||++.++|+++........+..|...    +.....++|.+++.|.|.
T Consensus        92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~----n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD----NNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             TSCCEEEEEEEEESHHHHHHSEEEEEEEEECT----TSCEEEEEEEEEEEEEET
T ss_pred             ccCCCEEEEEEEEhHHhccCCeEEEeecccCC----CCCccccEEEEEEEecCC
Confidence            99999999999999999776666666666542    234556999999999984

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=9.1e-16  Score=133.58  Aligned_cols=90  Identities=17%  Similarity=0.175  Sum_probs=77.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC--CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK--SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT  522 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~  522 (549)
                      .+.|.|+|++|++   ++..|.+||||++++..  ...+++|+++++|+||+|||+|.|.+...  ....|.|+|||++.
T Consensus        25 ~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~  101 (138)
T 1wfm_A           25 KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC
Confidence            4789999999993   56788999999999942  23468999999999999999999998643  34689999999999


Q ss_pred             CCC-ceeEEEEEeccccc
Q 008910          523 FGK-RYLSRYFQNRKTWL  539 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~  539 (549)
                      +++ ++||++.+++.++-
T Consensus       102 ~~~dd~lG~~~i~l~~l~  119 (138)
T 1wfm_A          102 FSRHSVAGELRLGLDGTS  119 (138)
T ss_dssp             SCTTSCSEEEEEESSSSS
T ss_pred             CCCCcEEEEEEEEccccc
Confidence            876 69999999999984

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.66  E-value=9.7e-16  Score=137.95  Aligned_cols=92  Identities=28%  Similarity=0.416  Sum_probs=81.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++...   ..+++|+++++|+||+|||+|.|.+...  ....|.|+|||++
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  115 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD  115 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence            4889999999999999998999999999999752   3688999999999999999999998643  3468999999999


Q ss_pred             CCCC-ceeEEEEEecccc
Q 008910          522 TFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l  538 (549)
                      .+++ ++||++.|++.++
T Consensus       116 ~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          116 IGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             SSSCCEEEEEEEEETTCC
T ss_pred             CCCCCcEEEeEEEecccC
Confidence            9876 6999999999985

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.66  E-value=1.6e-16  Score=139.23  Aligned_cols=101  Identities=28%  Similarity=0.488  Sum_probs=84.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc------------eeeecccccCCCCCccccEEEEE-Ee--cCCCCe
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSE------------TRNKTRVVNDCLNPIWNQTFDFV-VE--DGLHDM  512 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~------------~~~kT~~~~~t~nP~wne~f~f~-v~--~~~~~~  512 (549)
                      +.|.|+|++|+||+..+..|.+||||++++....            .+++|+++++|.||+|||.|.|. +.  +.....
T Consensus        18 ~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~   97 (142)
T 1rh8_A           18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT   97 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCE
T ss_pred             CEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCE
Confidence            7899999999999999999999999999997532            35899999999999999999997 54  224568


Q ss_pred             EEEEEEECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910          513 LIAEVWDHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       513 l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      |.|+|||++.+++ ++||++.|++.++... ....+||
T Consensus        98 l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~-~~~~~W~  134 (142)
T 1rh8_A           98 LEVTVWDYDRFSSNDFLGEVLIDLSSTSHL-DNTPRWY  134 (142)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEETTSCGGG-TTCCEEE
T ss_pred             EEEEEEECCCCCCCceEEEEEEeccccccC-CCCCeEE
Confidence            9999999999876 6999999999998553 2333443

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.66  E-value=2.3e-16  Score=139.23  Aligned_cols=94  Identities=19%  Similarity=0.272  Sum_probs=82.0

Q ss_pred             ccccEEEEEEEEeecCCCCCC----------CCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEE
Q 008910          445 IIRGVLSVTVILAENLPASDL----------MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLI  514 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~----------~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~  514 (549)
                      ...|.|.|+|++|++|+.++.          .|.+||||++.+++ .+..||+++++|+||+|||+|.|.+.+  ...|.
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~-~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~  102 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ-VRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLE  102 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECC-EeeEEeeecCCCCCCccCcEEEEEcCC--CCEEE
Confidence            467999999999999998872          36799999999976 345799999999999999999999975  35899


Q ss_pred             EEEEECCCCCC-ceeEEEEEeccccccc
Q 008910          515 AEVWDHDTFGK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       515 i~V~d~~~~~~-d~lG~~~i~l~~l~~~  541 (549)
                      |+|||++.+++ |+||++.|+++++...
T Consensus       103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~  130 (157)
T 2fk9_A          103 LAVFHETPLGYDHFVANCTLQFQELLRT  130 (157)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHHHH
T ss_pred             EEEEECCCCCCCCEEEEEEEEHHHhhcc
Confidence            99999999886 6999999999998764

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.66  E-value=6.3e-16  Score=132.98  Aligned_cols=118  Identities=21%  Similarity=0.306  Sum_probs=83.5

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeee-CCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~-~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  338 (549)
                      +.|.|.|+|++|+++..   .|.+||||++. .    +..+|+++ .++.||+|||+|.|.+.+. ...|.|+|||+| .
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~----~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~   72 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V----QNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L   72 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E----TTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-S
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e----cCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-C
Confidence            46899999999998852   57899999999 3    23455555 4799999999999999864 458999999999 8


Q ss_pred             CCCceeEEEEEECcccCCCc--eeEEEEEccccccccCCCceee-------EEEEEEEE
Q 008910          339 QSSELIGCAQVRLCELEPGK--VKDVWLKLVKDLDVQRDTKYRG-------QVHLELLY  388 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~--~~~~w~~L~~~~~~~~~~~~~G-------~l~l~l~~  388 (549)
                      ++|++||++.++|.++....  ....|.++.-... ..+++..|       .+.+.+.|
T Consensus        73 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           73 IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAI-MADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             SCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-----------CCSCCCCCEEEEEEEE
T ss_pred             CCCCeEEEEEEEHHHhhhcCCCCccccEEcccccc-cCCCcCcceECCCccEEEEEEEe
Confidence            89999999999999985432  1225655543221 12233333       47776665

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.66  E-value=2.1e-16  Score=137.31  Aligned_cols=101  Identities=27%  Similarity=0.371  Sum_probs=88.0

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeeccccc-CCCCCccccEEEEEEecCCCCeEEEEEEECCCC
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF  523 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~  523 (549)
                      ...|.|.|+|++|++|+..+..|.+||||++++++  .+++|++++ ++.||.|||+|.|.+.+ ....|.|+|||++.+
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~   83 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--CEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSC
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECC--ccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCC
Confidence            35699999999999999999889999999999987  567999998 89999999999999986 567899999999988


Q ss_pred             CC-ceeEEEEEeccccccccccceec
Q 008910          524 GK-RYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      ++ ++||++.|++.++...+.....|
T Consensus        84 ~~d~~lG~~~i~l~~l~~~~~~~~~w  109 (136)
T 1wfj_A           84 TEDDAVGEATIPLEPVFVEGSIPPTA  109 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEE
T ss_pred             CCCceEEEEEEEHHHhccCCCCCcEE
Confidence            75 69999999999997665444344

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.66  E-value=4e-16  Score=134.82  Aligned_cols=92  Identities=25%  Similarity=0.428  Sum_probs=81.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCC--
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG--  524 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~--  524 (549)
                      ...|.|+|++|++|+..+..|.+||||+++++....+++|+++++|+||.|||.|.|.+.+.  +.|.|+|||++..+  
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK   81 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence            36799999999999999999999999999997545789999999999999999999999864  35999999999876  


Q ss_pred             --CceeEEEEEecccccc
Q 008910          525 --KRYLSRYFQNRKTWLH  540 (549)
Q Consensus       525 --~d~lG~~~i~l~~l~~  540 (549)
                        +++||++.++++++..
T Consensus        82 ~~d~~lG~~~i~l~~l~~   99 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISR   99 (132)
T ss_dssp             TTTTEEEEEEECHHHHHH
T ss_pred             CCCCceEEEEEeHHHhhc
Confidence              4699999999888733

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=7.5e-16  Score=134.55  Aligned_cols=94  Identities=31%  Similarity=0.490  Sum_probs=84.2

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecC---CCCeEEEEEEECCC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDT  522 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~l~i~V~d~~~  522 (549)
                      ..|.|.|+|++|++|+..+. |.+||||++++++  .+++|++++++.||+|||.|.|.+.++   ....|.|+|||++.
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD--EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET   81 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS--CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC--EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence            46899999999999999998 9999999999986  678999999999999999999999754   35789999999999


Q ss_pred             CCC-ceeEEEEEecccccccc
Q 008910          523 FGK-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~  542 (549)
                      .++ ++||++.+++.++...+
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~  102 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQ  102 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSS
T ss_pred             CCCCceEEEEEEEHHHhccCC
Confidence            876 69999999999986554

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.65  E-value=5.2e-15  Score=155.85  Aligned_cols=169  Identities=19%  Similarity=0.283  Sum_probs=122.2

Q ss_pred             Eecccc-eeeEEEEEcccCccc-CcchHHHHHHHHHHHhhccccc-----c--ceeeccCCCCC------------Cc-c
Q 008910          198 SLREKK-KLDFKLKVVGGDIST-IPGLSDSIEATIHDAIEDSITW-----P--VRKIVPILPGD------------YS-E  255 (549)
Q Consensus       198 ~f~~~p-~l~f~~~~~g~~~~~-iP~l~~~~~~~i~~~i~~~~~~-----P--~~~~ip~~~~~------------~~-~  255 (549)
                      ++...| .|++.+.++- ++.. -+.-...++.++.+-|.+.-.+     |  |.. .++ .|+            .. .
T Consensus       310 Sv~~~P~~I~~~l~PI~-~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~-~~l-~g~~C~C~C~~~~~t~~~~  386 (540)
T 3nsj_A          310 SLPSNPGLVDYSLEPLH-TLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQ-HKS-SHDSCQCECQDSKVTNQDC  386 (540)
T ss_dssp             HTTTSCEEEEEEEEEGG-GGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTE-EEC-SSCTTCEEESCTTTBCGGG
T ss_pred             HHhhCCceEEEEEEEHH-HhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCC-ccC-CCCceEeeCCCCCCccccc
Confidence            444445 5888888874 3321 2333456666666666655444     2  111 111 111            11 1


Q ss_pred             ccc-CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEec-CCCCEEEEEEE
Q 008910          256 LEL-KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIY  333 (549)
Q Consensus       256 ~~~-~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~-~~~~~L~i~v~  333 (549)
                      ++. +..|.|+|+|++|++|+. |..|++||||+++++   ++.++|+++++++||+|||+|.|.+.+ ...+.|.|+||
T Consensus       387 C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~---~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~  462 (540)
T 3nsj_A          387 CPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFG---GQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVW  462 (540)
T ss_dssp             CBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEET---TEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEE
T ss_pred             ccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEEC---CEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEE
Confidence            222 358999999999999998 999999999999997   567999999999999999999998754 35678999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      |+|..++||+||++.++|.   .+ ..+.|+.|.           .|.|++++..
T Consensus       463 D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l~-----------~G~l~~~~~~  502 (540)
T 3nsj_A          463 DADYGWDDDLLGSCDRSPH---SG-FHEVTCELN-----------HGRVKFSYHA  502 (540)
T ss_dssp             ECCSSSCCEEEEEEEECCC---SE-EEEEEEECS-----------SSEEEEEEEE
T ss_pred             ECCCCCCCCEEEEEEEEee---CC-cEEEEEEcC-----------CeEEEEEEEE
Confidence            9999889999999999987   23 467888762           3888887664

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=9.5e-16  Score=135.07  Aligned_cols=95  Identities=21%  Similarity=0.309  Sum_probs=79.8

Q ss_pred             ccEEEEEEEEeecCCCC-CC------CCCCCcEEEEEEeCC-ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEE
Q 008910          447 RGVLSVTVILAENLPAS-DL------MGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAE  516 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~-~~------~g~~dpyv~v~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~  516 (549)
                      .+.|.|+|++|+||+.. +.      .|.+||||++++... ..+++|++++++.||+|||+|.|.+...  ....|.|+
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~  104 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLT  104 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEE
T ss_pred             CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEE
Confidence            48899999999999984 33      357999999999632 3578999999999999999999998632  23589999


Q ss_pred             EEECCCCCC-ceeEEEEEeccccccc
Q 008910          517 VWDHDTFGK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       517 V~d~~~~~~-d~lG~~~i~l~~l~~~  541 (549)
                      |||++.+++ ++||++.|++.++...
T Consensus       105 V~d~d~~~~~~~iG~~~i~l~~l~~~  130 (147)
T 2enp_A          105 VVDFDKFSRHCVIGKVSVPLCEVDLV  130 (147)
T ss_dssp             EECCSTTCCSCCCEEEEEETTTSCTT
T ss_pred             EEECCCCcCCcEEEEEEEechhcCCC
Confidence            999998876 6999999999998554

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.64  E-value=8.6e-16  Score=132.97  Aligned_cols=102  Identities=17%  Similarity=0.278  Sum_probs=84.9

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEE-EecC--CCCeEEEEEEE
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV-VEDG--LHDMLIAEVWD  519 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~-v~~~--~~~~l~i~V~d  519 (549)
                      ..+.|.|+|++|+||+. +..|.+||||++++..   ...++||+++++|+||+|||+|.|. +...  ....|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            45899999999999997 6678999999999832   2467899999999999999999999 7632  45689999999


Q ss_pred             CCCCCC-ceeEEEEEeccccccccccceecC
Q 008910          520 HDTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      ++.+++ ++||++.+++.++... ....+||
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~-~~~~~W~  126 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLS-KETVKWY  126 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTT-SCEEEEE
T ss_pred             CCCCCCCcEEEEEEEEhhhccCC-CCcceeE
Confidence            999876 6999999999998553 3444554

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.64  E-value=5.2e-16  Score=134.27  Aligned_cols=94  Identities=33%  Similarity=0.510  Sum_probs=84.9

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCC
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  524 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~  524 (549)
                      ...|.|.|+|++|++|+..+..|.+||||++++++  .+++|++++++.||.|||+|.|.+.++ ...|.|+|||++..+
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d~~~   86 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDK   86 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT--EEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTE
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC--EEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECCCCC
Confidence            45799999999999999999899999999999987  678999999999999999999999864 468999999999987


Q ss_pred             C-ceeEEEEEeccccccc
Q 008910          525 K-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~  541 (549)
                      + ++||++.+++.++...
T Consensus        87 ~~~~lG~~~i~l~~l~~~  104 (133)
T 2ep6_A           87 PPDFLGKVAIPLLSIRDG  104 (133)
T ss_dssp             EEEECCBCEEEGGGCCSS
T ss_pred             CCCeeEEEEEEHHHccCC
Confidence            5 6999999999998553

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.64  E-value=6.2e-16  Score=165.01  Aligned_cols=120  Identities=22%  Similarity=0.416  Sum_probs=105.1

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  338 (549)
                      ...|.|.|+|++|++|+.+|..|.+||||+++++   .++++|+++++|+||.|||+|.|.+.......|.|+|||+|.+
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~---~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~  460 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMG---SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF  460 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEEC---CeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence            4579999999999999999999999999999996   6789999999999999999999999877777899999999999


Q ss_pred             CCCceeEEEEEECcccCCCce----eEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          339 QSSELIGCAQVRLCELEPGKV----KDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~~----~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      ++|++||++.+++.++..+..    ...|+.+.        +...|+|++.+.+.
T Consensus       461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~--------~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH--------EVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB--------SSSSCEEEEEEEEE
T ss_pred             CCCCceEEEEEEHHHhccccCCCCceeeeecCC--------CCCCceEEEEEEEE
Confidence            999999999999999875443    67898874        24679999888764

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.64  E-value=1.1e-15  Score=138.10  Aligned_cols=100  Identities=22%  Similarity=0.326  Sum_probs=83.0

Q ss_pred             cEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCc---eeeecccccCCCCCccccEEEEEEecCCCCeEEEEEE-ECCC
Q 008910          448 GVLSVTVILAENLPASDL-MGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW-DHDT  522 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~-d~~~  522 (549)
                      +.|.|+|++|+||+..+. .|.+||||++++....   .++||+++++|+||+|||+|.|.+.. ....|.|+|| |++.
T Consensus        30 ~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~d~  108 (171)
T 2q3x_A           30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDYGR  108 (171)
T ss_dssp             TEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEECST
T ss_pred             CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcCCC
Confidence            789999999999999985 6899999999986532   37899999999999999999999863 4578999999 9998


Q ss_pred             CCC-ceeEEEEEeccccccccccceecC
Q 008910          523 FGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +++ ++||++.+++.++... .....||
T Consensus       109 ~~~d~~iG~~~i~l~~l~~~-~~~~~W~  135 (171)
T 2q3x_A          109 MDHKCFMGVAQILLEELDLS-SMVIGWY  135 (171)
T ss_dssp             TCSSEEEEEEEECGGGSCTT-SCEEEEE
T ss_pred             CCCCCEEEEEEEEHHHcccC-CCcceeE
Confidence            876 6999999999998643 2344443

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.64  E-value=3.7e-16  Score=135.78  Aligned_cols=95  Identities=20%  Similarity=0.370  Sum_probs=82.1

Q ss_pred             cccEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEE
Q 008910          446 IRGVLSVTVILAENLPASDLMGK-----------ADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLI  514 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~-----------~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~  514 (549)
                      ..|.|.|+|++|+||+..+..+.           +||||++++++ ....+|+++++|+||+|||+|+|.+.+.  ..|.
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~-~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~   80 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIE   80 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECC-eEeeeeeEECCCcCCccCCEEEEEecCC--CEEE
Confidence            46899999999999998775433           89999999965 3457899999999999999999999764  7899


Q ss_pred             EEEEECCCCCC-ceeEEEEEeccccccccc
Q 008910          515 AEVWDHDTFGK-RYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       515 i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~  543 (549)
                      |+|||++..++ |+||++.+++.++...+.
T Consensus        81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~  110 (136)
T 1gmi_A           81 LAVFHDAPIGYDDFVANCTIQFEELLQNGS  110 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTC
T ss_pred             EEEEeCCCCCCCCEEEEEEEEHHHhcccCC
Confidence            99999998876 699999999999987653

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.63  E-value=1.9e-15  Score=133.33  Aligned_cols=90  Identities=30%  Similarity=0.556  Sum_probs=82.0

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC--
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF--  523 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~--  523 (549)
                      ..|.|.|+|++|++|+..+..|.+||||++++++  .+++|+++++|.||.|||.|.|.+.++ ...|.|+|||++..  
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~   91 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK--TKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIK   91 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT--EEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC--EEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCcc
Confidence            4699999999999999999999999999999976  788999999999999999999999765 46899999999985  


Q ss_pred             ---------CC-ceeEEEEEecccc
Q 008910          524 ---------GK-RYLSRYFQNRKTW  538 (549)
Q Consensus       524 ---------~~-d~lG~~~i~l~~l  538 (549)
                               ++ ++||++.+++.++
T Consensus        92 ~~~~~~~~~~~~~~lG~~~i~l~~l  116 (148)
T 3kwu_A           92 SRVKQRFKRESDDFLGQTIIEVRTL  116 (148)
T ss_dssp             HHHHTTTSSCSSEEEEEEEEEGGGC
T ss_pred             ccccccccCCCCccEEEEEEEHHHC
Confidence                     44 6999999999998

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.63  E-value=2.4e-15  Score=133.41  Aligned_cols=98  Identities=26%  Similarity=0.423  Sum_probs=79.9

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC----ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEEC
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH  520 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~  520 (549)
                      ...+.|.|+|++|++|+..+..|.+||||+++++..    ..+++|+++++|.||.|||+|.|.+.. ....|.|+|||+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~l~~~V~d~   95 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP-QQHRLLFEVFDE   95 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT-TTCEEEEEEEEC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC-CCCEEEEEEEEC
Confidence            456999999999999999998899999999999742    257899999999999999999999985 456899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccccc
Q 008910          521 DTFGK-RYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       521 ~~~~~-d~lG~~~i~l~~l~~~~~  543 (549)
                      +..++ ++||++.|++.++.....
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~  119 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENP  119 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCT
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCC
Confidence            99876 699999999999976654

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.60  E-value=4.4e-15  Score=134.94  Aligned_cols=97  Identities=26%  Similarity=0.420  Sum_probs=79.0

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCc----eeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE----TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~  521 (549)
                      ..|.|.|+|++|++|+..+..|.+||||++++++..    .+++|++++++.||.|||.|.|.+.. ....|.|+|||++
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d~d   84 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFDEN   84 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEECC
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEECC
Confidence            469999999999999999989999999999997522    56899999999999999999999984 4468999999999


Q ss_pred             CCCC-ceeEEEEEeccccccccc
Q 008910          522 TFGK-RYLSRYFQNRKTWLHDGS  543 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~  543 (549)
                      .+++ ++||++.|++.++...+.
T Consensus        85 ~~~~d~~lG~~~i~l~~l~~~~~  107 (176)
T 3m7f_B           85 RLTRDDFLGQVDVPLYPLPTENP  107 (176)
T ss_dssp             ----CEEEEEEEEESCSCCBC--
T ss_pred             CCCCCcEEEEEEEEHHHccccCC
Confidence            8876 699999999999977654

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.59  E-value=1.1e-14  Score=130.44  Aligned_cols=87  Identities=21%  Similarity=0.286  Sum_probs=73.7

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeC-CCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  338 (549)
                      +.|.|.|+|++|+++.   ..|.+||||++. .    +..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||+| .
T Consensus        12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~----~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~   81 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V----QNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L   81 (167)
T ss_dssp             CCCEEEEEEEEEECSS---CGGGCEEEEEEE-E----TTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-S
T ss_pred             ceEEEEEEEEEEECCC---CCCCCCeEEEEE-e----cceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-C
Confidence            4689999999999884   257899999999 3    235666665 699999999999999865 458999999999 8


Q ss_pred             CCCceeEEEEEECcccCC
Q 008910          339 QSSELIGCAQVRLCELEP  356 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~  356 (549)
                      ++|++||++.++|.++..
T Consensus        82 ~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           82 IWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             SCCEEEEEEEEEGGGSCB
T ss_pred             CCCceEEEEEEEHHHhcc
Confidence            899999999999999854

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.58  E-value=6.3e-15  Score=133.01  Aligned_cols=92  Identities=25%  Similarity=0.324  Sum_probs=79.8

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  525 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~  525 (549)
                      ..+.|.|+|++|++|+..+..+.+||||++++++  .++||+++++|+||+|||+|.|.+.  ....|.|+|||++.+++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~--~~~kT~v~~~tlnP~Wne~f~f~v~--~~~~L~~~V~D~d~~~~  109 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG--QSKKTEKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQTLKS  109 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT--EEEECCCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECCSSSC
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECC--EEeEccccCCCCCCeECCEEEEEeC--CCCEEEEEEEECCCCCC
Confidence            4688999999999999444445599999999987  8889999999999999999999985  36789999999999876


Q ss_pred             -ceeEEEEEeccccccc
Q 008910          526 -RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       526 -d~lG~~~i~l~~l~~~  541 (549)
                       ++||++.+++.++...
T Consensus       110 dd~lG~~~i~l~~l~~~  126 (173)
T 2nq3_A          110 DVLLGTAALDIYETLKS  126 (173)
T ss_dssp             CEEEEEEEEEHHHHHHH
T ss_pred             CceEEEEEEEHHHhccc
Confidence             5999999999998754

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.56  E-value=2.9e-15  Score=162.51  Aligned_cols=110  Identities=28%  Similarity=0.571  Sum_probs=100.4

Q ss_pred             cCceeEEEEEEEEcccccc---cCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD  334 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d  334 (549)
                      .++.|.|.|+|++|++|+.   +|..|.+||||++++.+....+++|+++++++||+|||+|.|.+.....+.|.|+|||
T Consensus        14 ~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D   93 (749)
T 1cjy_A           14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD   93 (749)
T ss_dssp             CCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred             CCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence            3578999999999999998   8888999999999998555578999999999999999999999987667799999999


Q ss_pred             CCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      +|.++ |++||++.+++.++..+...+.|+.|.+
T Consensus        94 ~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           94 ANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             CCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred             CCCCC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence            99988 9999999999999988888899999964

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.55  E-value=3.5e-14  Score=139.45  Aligned_cols=95  Identities=31%  Similarity=0.475  Sum_probs=83.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~  523 (549)
                      .+.|.|+|++|+||+..+..|.+||||+++++.. ..+++|++++++.||.|||+|.|.+...  ....|.|+|||++.+
T Consensus        18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~   97 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF   97 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence            4889999999999999998899999999999742 3578999999999999999999998643  346899999999988


Q ss_pred             CC-ceeEEEEEeccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~  541 (549)
                      ++ ++||++.+++.++...
T Consensus        98 ~~~~~lG~~~i~l~~l~~~  116 (284)
T 2r83_A           98 SKHDIIGEFKVPMNTVDFG  116 (284)
T ss_dssp             SCCCEEEEEEEEGGGCCCS
T ss_pred             CCCceeEEEEEcchhcccC
Confidence            75 6999999999998553

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.52  E-value=9.7e-14  Score=149.56  Aligned_cols=124  Identities=17%  Similarity=0.306  Sum_probs=102.2

Q ss_pred             ceeEEEEEEEEcccccccCC--CCCCCcEEEEEEeeC--CCCeEEeeeeCCC-CCCeeccEEEEEEecCCCCEEEEEEEE
Q 008910          260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPL--PEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYD  334 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~kT~~~~~t-~nP~w~e~f~f~v~~~~~~~L~i~v~d  334 (549)
                      ..+.|.|+|++|++|+..+.  .+.+||||++.+...  ...++||++++++ .||+|||+|.|.+..+....|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            56899999999999999884  688999999999622  2357899999887 999999999999987766789999999


Q ss_pred             CCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      +|..++|++||++.+++..|..|.   .|++|....   ......|.|.+.+.|.
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~---g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKN---GDQHPSATLFVKISIQ  623 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTT---SCEEEEEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCC---cCCCCceEEEEEEEEE
Confidence            999989999999999999998753   588885421   1112468888888774

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.52  E-value=3.8e-14  Score=139.97  Aligned_cols=94  Identities=30%  Similarity=0.457  Sum_probs=79.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~  523 (549)
                      .+.|.|+|++|++|+..+..|.+||||++++.. ...+++|+++++|.||.|||+|.|.+...  ....|.|+|||++.+
T Consensus        19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~   98 (296)
T 1dqv_A           19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF   98 (296)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred             CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC
Confidence            478999999999999999999999999999832 23678999999999999999999998643  245899999999988


Q ss_pred             CC-ceeEEEEEe-cccccc
Q 008910          524 GK-RYLSRYFQN-RKTWLH  540 (549)
Q Consensus       524 ~~-d~lG~~~i~-l~~l~~  540 (549)
                      ++ ++||++.++ +.++..
T Consensus        99 ~~~~~iG~~~i~~l~~~~~  117 (296)
T 1dqv_A           99 SRHDLIGQVVLDNLLELAE  117 (296)
T ss_dssp             SCCCEEEEEECCCTTGGGS
T ss_pred             CCCceEEEEEecccccccc
Confidence            76 699999995 444433

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.48  E-value=1.4e-13  Score=118.30  Aligned_cols=88  Identities=24%  Similarity=0.306  Sum_probs=71.8

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeeccccc-CCCCCccccEEEEEEecCCCCeEEEEEEECCCCC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  524 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~  524 (549)
                      ..+.|.|+|++|++++.   .|.+||||+++ +   +..+|++++ ++.||+|||.|.|.+.+ ....|.|+|||++ .+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~---~~~kt~~~~~~t~nP~WnE~f~f~v~~-~~~~L~~~V~D~d-~~   73 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V---QNVKSTTIAVRGSQPSWEQDFMFEINR-LDLGLTVEVWNKG-LI   73 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E---TTEEEECCCEESSSCEEEEEEEEEECC-CSSEEEEEEEECC-SS
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e---cCEEEeEecCCCCCceECCEEEEEEeC-CCCeEEEEEEECC-CC
Confidence            45899999999998853   57899999999 3   233444444 68999999999999985 3457999999999 66


Q ss_pred             C-ceeEEEEEecccccccc
Q 008910          525 K-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~~  542 (549)
                      + |+||++.|+++++...+
T Consensus        74 ~dd~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           74 WDTMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             CEEEEEEEEEEGGGSCBCS
T ss_pred             CCCeEEEEEEEHHHhhhcC
Confidence            5 69999999999987654

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.42  E-value=1.5e-14  Score=151.95  Aligned_cols=126  Identities=17%  Similarity=0.280  Sum_probs=23.2

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCC---CCCeeccEEEEEEecCCCCEEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINND---LNPIWNEHFEFIVEDESTQHLVVRIYD  334 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t---~nP~w~e~f~f~v~~~~~~~L~i~v~d  334 (549)
                      .+..|.|+|+|++|++|+++|     ||||+++++  +....||+++++|   +||+|||+|.|.+... ...|.++|||
T Consensus         7 ~r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~--~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d   78 (483)
T 3bxj_A            7 RRVDNVLKLWIIEARELPPKK-----RYYCELCLD--DMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYR   78 (483)
T ss_dssp             EEEEECC----------------------------------------------------CCEECC---------------
T ss_pred             ceeccEEEEEEEEcCCcCCCC-----CCeEEEEEC--CeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEe
Confidence            356799999999999999876     999999987  2345789999999   9999999999987543 4689999999


Q ss_pred             C-C---CCCCCceeEEEEEECcccCCCceeEEEEEccccccc-------------------cCCCceeeEEEEEEEEeec
Q 008910          335 D-E---GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV-------------------QRDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       335 ~-~---~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~-------------------~~~~~~~G~l~l~l~~~p~  391 (549)
                      + |   ..++|++||++.+++.++..+...+.|++|......                   .+.....|.|++++.|.+.
T Consensus        79 ~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~  158 (483)
T 3bxj_A           79 DSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTM  158 (483)
T ss_dssp             ----------------------------CCEECC--------------------------------------CEEEEEEC
T ss_pred             cCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeee
Confidence            5 4   357899999999999999888888999999543210                   0112346999999999864

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.41  E-value=5.3e-13  Score=119.41  Aligned_cols=87  Identities=21%  Similarity=0.243  Sum_probs=71.7

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeeccccc-CCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  525 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~  525 (549)
                      .+.|.|+|++|++++   ..|.+||||+++ +   +..||++++ ++.||+|||+|.|.+.+. ...|.|+|||++ +++
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~---~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~   83 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK-V---QNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIW   83 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE-E---TTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-SSC
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE-e---cceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-CCC
Confidence            579999999999885   257899999999 3   234555555 689999999999999864 457999999999 654


Q ss_pred             -ceeEEEEEecccccccc
Q 008910          526 -RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       526 -d~lG~~~i~l~~l~~~~  542 (549)
                       |+||++.|+++++...+
T Consensus        84 dd~iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           84 DTMVGTVWIPLRTIRQSN  101 (167)
T ss_dssp             CEEEEEEEEEGGGSCBCS
T ss_pred             CceEEEEEEEHHHhcccC
Confidence             69999999999987654

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.40  E-value=7.8e-13  Score=111.84  Aligned_cols=89  Identities=15%  Similarity=0.207  Sum_probs=78.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeeccccc-CCCCCccccEEEEEEecC--CCCeEEEEEEECCCCCC
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK  525 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~~  525 (549)
                      .|+|.|.+|.+|+     |.+|||+++.+.+  .++||+++. ++.||+|||.|+|++..+  ..+.|.|.|+|++.+++
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg--~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~   94 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTFRG--QSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFS   94 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEETT--EEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSC
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEEec--cceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccC
Confidence            5899999999998     5789999999976  899999998 699999999999999754  45689999999999887


Q ss_pred             -ceeEEEEEecccccccccc
Q 008910          526 -RYLSRYFQNRKTWLHDGSE  544 (549)
Q Consensus       526 -d~lG~~~i~l~~l~~~~~~  544 (549)
                       .+||++.++|.++...+.-
T Consensus        95 nrlIG~~~i~Lq~lv~~~~l  114 (144)
T 3l9b_A           95 NKLIGTFRMVLQKVVEENRV  114 (144)
T ss_dssp             CEEEEEEEEESHHHHHHSEE
T ss_pred             CCEEEEEEEEhHHhccCCeE
Confidence             5999999999999877643

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.38  E-value=1.3e-12  Score=137.61  Aligned_cols=88  Identities=25%  Similarity=0.265  Sum_probs=79.1

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEec-CCCCeEEEEEEECCCCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFGK  525 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~~~~l~i~V~d~~~~~~  525 (549)
                      .+.|.|+|++|++|+. |..|.+||||++++++  .++||+++++++||+|||.|.|.+.+ .....|.|+|||+|..++
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~--~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~  469 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG--QEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWD  469 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT--EEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSC
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC--EeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCC
Confidence            5899999999999998 8889999999999986  56999999999999999999998653 356789999999999876


Q ss_pred             -ceeEEEEEeccc
Q 008910          526 -RYLSRYFQNRKT  537 (549)
Q Consensus       526 -d~lG~~~i~l~~  537 (549)
                       |+||++.+++..
T Consensus       470 dD~LG~~~~~L~~  482 (540)
T 3nsj_A          470 DDLLGSCDRSPHS  482 (540)
T ss_dssp             CEEEEEEEECCCS
T ss_pred             CCEEEEEEEEeeC
Confidence             799999999873

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.37  E-value=1.6e-12  Score=138.51  Aligned_cols=95  Identities=32%  Similarity=0.467  Sum_probs=85.6

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCC
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  524 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~  524 (549)
                      ...|.|.|+|++|++|+..+..|.+||||++++++  .+++|+++++|.||.|||+|.|.+..+....|.|+|||++.++
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~--~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~  461 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGS--QSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFS  461 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT--EEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECC--eeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC
Confidence            35689999999999999999999999999999976  7889999999999999999999998777778999999999987


Q ss_pred             C-ceeEEEEEeccccccc
Q 008910          525 K-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~  541 (549)
                      + |+||++.+++.++...
T Consensus       462 ~~d~lG~~~~~l~~l~~~  479 (510)
T 3jzy_A          462 PDDFLGRTEIPVAKIRTE  479 (510)
T ss_dssp             SCCEEEEEEEEHHHHHHH
T ss_pred             CCCceEEEEEEHHHhccc
Confidence            6 6999999999998654

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.33  E-value=1e-12  Score=142.69  Aligned_cols=96  Identities=24%  Similarity=0.453  Sum_probs=85.4

Q ss_pred             cccEEEEEEEEeecCCC---CCCCCCCCcEEEEEEeCC-ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECC
Q 008910          446 IRGVLSVTVILAENLPA---SDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~---~~~~g~~dpyv~v~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~  521 (549)
                      ..+.|.|+|++|++|+.   ++..|.+||||++++++. ..++||+++++++||+|||+|.|.+..+....|.|+|||++
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D   95 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   95 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence            46899999999999998   777889999999999742 36889999999999999999999998766678999999999


Q ss_pred             CCCCceeEEEEEeccccccc
Q 008910          522 TFGKRYLSRYFQNRKTWLHD  541 (549)
Q Consensus       522 ~~~~d~lG~~~i~l~~l~~~  541 (549)
                      .+++++||++.|++.++...
T Consensus        96 ~~~ddfIG~v~I~L~~L~~g  115 (749)
T 1cjy_A           96 YVMDETLGTATFTVSSMKVG  115 (749)
T ss_dssp             SSSCEEEEEECCBSTTSCTT
T ss_pred             CCCCceeEEEEEEHHHcCCC
Confidence            88866999999999998543

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.32  E-value=5.7e-12  Score=135.80  Aligned_cols=101  Identities=21%  Similarity=0.313  Sum_probs=85.7

Q ss_pred             cccEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeC---CceeeecccccCC-CCCccccEEEEEEecCCCCeEEEEEEE
Q 008910          446 IRGVLSVTVILAENLPASDL--MGKADPYVVLTMKK---SETRNKTRVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWD  519 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~--~g~~dpyv~v~~~~---~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~~~~l~i~V~d  519 (549)
                      ..+.|.|+|++|++|+..+.  .+.+||||++.+.+   ...++||++++++ .||+|||+|.|.+..+....|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            56899999999999998874  68899999999954   2467899999987 999999999999987666789999999


Q ss_pred             CCCCCC-ceeEEEEEecccccccccccee
Q 008910          520 HDTFGK-RYLSRYFQNRKTWLHDGSEALR  547 (549)
Q Consensus       520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~  547 (549)
                      ++..++ ++||++.+++.++.. |...++
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~-G~r~v~  602 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQ-GYRHVH  602 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCC-EEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCC-CcEEEe
Confidence            998865 699999999999844 433333

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.26  E-value=7.8e-12  Score=137.37  Aligned_cols=108  Identities=34%  Similarity=0.544  Sum_probs=94.4

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC--CCCeEEeeeeCCCCCCeeccEEEEEEecC-CCCEEEEEEEECCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEG  337 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~~  337 (549)
                      .+.|.|+|++|++|..+|..|.+|||+++++.+.  ...+++|+++++++||.|||+|.|.+... ....|.++|||+|.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            5889999999999999999999999999999643  34578999999999999999999998754 34579999999999


Q ss_pred             CCCCceeEEEEEECcccCCCceeEEEEEcccc
Q 008910          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (549)
                      .++|++||++.+++.++.... .+.|+.|...
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~  281 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  281 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred             ccccccccccccchhhhccCC-cccceeeccc
Confidence            999999999999999987654 4899998653

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.12  E-value=4.6e-10  Score=123.21  Aligned_cols=116  Identities=23%  Similarity=0.362  Sum_probs=90.0

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--C--CeEEeeeeCC-CCCCeeccE-EEEE-EecCCCCEEEEEEE
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--E--KTKKSKTINN-DLNPIWNEH-FEFI-VEDESTQHLVVRIY  333 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~--~~~kT~~~~~-t~nP~w~e~-f~f~-v~~~~~~~L~i~v~  333 (549)
                      .+.|.|+|++|++|+.+    .+||||++.+...+  .  ++++|+++++ +.||+|||+ |.|. +..+....|+|.||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999853    68999999997321  2  4678999875 699999998 9998 76665668999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      |++    +++||++.+||..|..|-   .+++|....   ...-..+.|.+.+.+..
T Consensus       725 D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~~---g~~~~~atLfv~i~~~~  771 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPGY---RHVPLRNES---NRPLGLASVFAHIVAKD  771 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCEE---EEEEEECTT---SCEEEEEEEEEEEEEEE
T ss_pred             ecC----CCeeeEEEEEHHHcCCcc---eEEEEeCCC---CCCCCceEEEEEEEEEe
Confidence            985    789999999999998763   456775421   12233478888887764

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.12  E-value=4.3e-10  Score=124.13  Aligned_cols=115  Identities=19%  Similarity=0.308  Sum_probs=88.7

Q ss_pred             ceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC---CCCeEEee-eeC-CCCCCeecc-EEEE-EEecCCCCEEEEEE
Q 008910          260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL---PEKTKKSK-TIN-NDLNPIWNE-HFEF-IVEDESTQHLVVRI  332 (549)
Q Consensus       260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~~~~kT~-~~~-~t~nP~w~e-~f~f-~v~~~~~~~L~i~v  332 (549)
                      ..|.|.|+|++|++|+.    +.+||||++.+...   ..+++||+ +++ ++.||+||| +|.| .+..+....|+|.|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46899999999999984    46899999999632   12467899 775 569999999 6999 78766666899999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      ||++    +++||++.+|+..|..|   ..|++|....   ...-..+.|.+.+.+
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G---~r~v~L~~~~---g~~~~~~~Lfv~i~~  797 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSG---YHHLCLHSES---NMPLTMPALFIFLEM  797 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCE---EEEEEEECTT---CCEEEEEEEEEEEEE
T ss_pred             EEeC----CCccceEeeehhhcCCC---cEEEeccCCC---CCCCCceEEEEEEEE
Confidence            9986    78999999999999875   3567775321   111235777777766

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.11  E-value=3.9e-10  Score=124.43  Aligned_cols=116  Identities=17%  Similarity=0.359  Sum_probs=90.2

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC---CCeEEeeeeCC-CCCCeecc-EEEEE-EecCCCCEEEEEEEEC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINN-DLNPIWNE-HFEFI-VEDESTQHLVVRIYDD  335 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~~~~~-t~nP~w~e-~f~f~-v~~~~~~~L~i~v~d~  335 (549)
                      ..|.|+|++|++|+.+    .+||||++.+...+   ..+++|+++++ +.||+||| +|.|. +..+....|+|+|||+
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            4799999999999853    68999999997321   13578999875 59999999 69998 7666566899999998


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  391 (549)
                      |    +++||++.+||..|..|-   .+++|....   ...-..|.|.+.+.+..+
T Consensus       801 d----ddfiG~~~lpL~~L~~Gy---R~vpL~~~~---g~~l~~atLfv~i~~~~~  846 (885)
T 3ohm_B          801 G----GKFVGHRILPVSAIRSGY---HYVCLRNEA---NQPLCLPALLIYTEASDY  846 (885)
T ss_dssp             T----TEEEEEEEEETTTCCCEE---EEEEEECTT---SCEEEEEEEEEEEEEEEC
T ss_pred             C----ccEEeeEEEEHHHcCCCc---eEEEecCCC---CCccCceEEEEEEEEEec
Confidence            7    789999999999998763   356775321   122357899999988743

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.07  E-value=2.8e-10  Score=124.96  Aligned_cols=95  Identities=34%  Similarity=0.545  Sum_probs=82.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECCCC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF  523 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~~~  523 (549)
                      +.|.|++.+|++|+.++..|.+||||++++..   ...+++|+++++|+||.|||.|.|.+... ....|.|+|||++..
T Consensus       172 ~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~  251 (674)
T 3pfq_A          172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT  251 (674)
T ss_dssp             SEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSS
T ss_pred             ceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccc
Confidence            78999999999999999999999999999832   23578999999999999999999998743 334699999999998


Q ss_pred             CC-ceeEEEEEecccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~  542 (549)
                      ++ |+||.+.+++.++...+
T Consensus       252 ~~dd~iG~~~i~l~~l~~~~  271 (674)
T 3pfq_A          252 SRNDFMGSLSFGISELQKAG  271 (674)
T ss_dssp             SCCEECCBCCCBTTHHHHCC
T ss_pred             cccccccccccchhhhccCC
Confidence            76 69999999999986654

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.99  E-value=7.3e-09  Score=84.85  Aligned_cols=113  Identities=12%  Similarity=0.215  Sum_probs=84.0

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC-CCeEEe-eeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-EKTKKS-KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT-~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  338 (549)
                      .+-|+|.+.++.--+-+......||||.+.+.... ....+| .++++|..|+|||+|.-.+++  ...|.+.|++... 
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT-
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC-
Confidence            36688888665532212222368999999986210 112355 667889999999999988874  5689999997553 


Q ss_pred             CCCceeEEEEEECcccC-----CCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          339 QSSELIGCAQVRLCELE-----PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~-----~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                         ++++.|++++.+|.     .+...+.|++|.          +.|+|++.+.|+
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe----------P~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ----------PQAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB----------SSCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEecc----------cCcEEEEEEEEe
Confidence               89999999999986     456779999984          579999999886

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.96  E-value=2.2e-09  Score=117.90  Aligned_cols=94  Identities=17%  Similarity=0.295  Sum_probs=77.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---c--eeeecccccC-CCCCccccE-EEEE-EecCCCCeEEEEEE
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---E--TRNKTRVVND-CLNPIWNQT-FDFV-VEDGLHDMLIAEVW  518 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~--~~~kT~~~~~-t~nP~wne~-f~f~-v~~~~~~~l~i~V~  518 (549)
                      .+.|.|+|++|++|+..    .+||||+|.+.+.   .  +++||+++++ +.||+|||+ |.|. +..+....|.|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999853    5799999999642   1  5679999885 599999998 9998 77666678999999


Q ss_pred             ECCCCCCceeEEEEEeccccccccccceec
Q 008910          519 DHDTFGKRYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       519 d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      |++   +|+||++.++++.+ ..|...++|
T Consensus       725 D~d---ddfiG~~~ipL~~L-~~GyR~vpL  750 (816)
T 3qr0_A          725 EEN---GKFIGHRVMPLDGI-KPGYRHVPL  750 (816)
T ss_dssp             ETT---SCEEEEEEEESTTC-CCEEEEEEE
T ss_pred             ecC---CCeeeEEEEEHHHc-CCcceEEEE
Confidence            985   57999999999997 445555544

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=98.95  E-value=6.4e-11  Score=124.35  Aligned_cols=96  Identities=17%  Similarity=0.204  Sum_probs=12.3

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCC---CCCccccEEEEEEecCCCCeEEEEEEEC-C
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDC---LNPIWNQTFDFVVEDGLHDMLIAEVWDH-D  521 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t---~nP~wne~f~f~v~~~~~~~l~i~V~d~-~  521 (549)
                      ..+.|.|+|++|++|+.++     ||||++++++ ....||+++++|   .||+|||+|+|.+... ...|.|+|||+ +
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~-~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d   81 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RYYCELCLDD-MLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSD   81 (483)
T ss_dssp             EEECC---------------------------------------------------CCEECC------------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CCeEEEEECC-eEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCC
Confidence            4578999999999999876     8999999976 346789999999   9999999999987533 46899999995 4


Q ss_pred             ---CCC-CceeEEEEEeccccccccccceecC
Q 008910          522 ---TFG-KRYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       522 ---~~~-~d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                         ..+ +++||++.|+++++... .....||
T Consensus        82 ~~~~~~~d~~lG~v~i~l~~l~~~-~~~~~W~  112 (483)
T 3bxj_A           82 KKRKKDKAGYVGLVTVPVATLAGR-HFTEQWY  112 (483)
T ss_dssp             --------------------------CCEECC
T ss_pred             ccccCCCCceEEEEEEEHHHhcCC-CCCCeEE
Confidence               234 47999999999998643 3444554

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.95  E-value=1.8e-09  Score=119.18  Aligned_cols=94  Identities=22%  Similarity=0.347  Sum_probs=76.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC----ceeeecccccC-CCCCcccc-EEEEE-EecCCCCeEEEEEEE
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVND-CLNPIWNQ-TFDFV-VEDGLHDMLIAEVWD  519 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~~~~~-t~nP~wne-~f~f~-v~~~~~~~l~i~V~d  519 (549)
                      ...|.|+|++|++|+..    .+||||+|.+.+.    ..++||+++.+ +.||+||| +|.|. +..+....|.|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            35799999999999853    5799999999641    13579999886 59999999 69998 766666789999999


Q ss_pred             CCCCCCceeEEEEEeccccccccccceec
Q 008910          520 HDTFGKRYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       520 ~~~~~~d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      ++   +|+||++.++++.+ ..|...++|
T Consensus       800 ~d---ddfiG~~~lpL~~L-~~GyR~vpL  824 (885)
T 3ohm_B          800 EG---GKFVGHRILPVSAI-RSGYHYVCL  824 (885)
T ss_dssp             TT---TEEEEEEEEETTTC-CCEEEEEEE
T ss_pred             CC---ccEEeeEEEEHHHc-CCCceEEEe
Confidence            87   67999999999997 455555554

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.91  E-value=1.1e-08  Score=84.79  Aligned_cols=113  Identities=16%  Similarity=0.309  Sum_probs=84.7

Q ss_pred             eeEEEEEEEEcccccccC-CCCCCCcEEEEEEeeC-CCCeEEe-eeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 008910          261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPL-PEKTKKS-KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~-~~~~~kT-~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~  337 (549)
                      .+-|+|.+.+..--+-+. .....||||.+.+... .....+| .++++|..|+|||+|.-.+++  ...|.|.|++...
T Consensus         9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~   86 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKNV   86 (138)
T ss_dssp             CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSSC
T ss_pred             CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCCC
Confidence            467888887765433222 1235899999998721 1123566 667789999999999888774  5689999996543


Q ss_pred             CCCCceeEEEEEECcccC-----CCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          338 IQSSELIGCAQVRLCELE-----PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~-----~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                          +|++.|++++.+|.     .+...+.|++|.          +.|+|++.+.|.
T Consensus        87 ----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe----------P~Gkl~v~i~~~  129 (138)
T 2enj_A           87 ----DLISETTVELYSLAERCRKNNGKTEIWLELK----------PQGRMLMNARYF  129 (138)
T ss_dssp             ----SCCEEEEEESHHHHHHHHHTTTCEEEEEECB----------SSCEEEEEEEEC
T ss_pred             ----CeeeEEEEEHHHHHhhhccCCCceEEEEecc----------cCcEEEEEEEEE
Confidence                89999999999996     456679999984          579999999996

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.91  E-value=3.6e-09  Score=116.77  Aligned_cols=95  Identities=22%  Similarity=0.365  Sum_probs=76.4

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---C-ceeeecc-ccc-CCCCCcccc-EEEE-EEecCCCCeEEEEE
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---S-ETRNKTR-VVN-DCLNPIWNQ-TFDF-VVEDGLHDMLIAEV  517 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~-~~~~kT~-~~~-~t~nP~wne-~f~f-~v~~~~~~~l~i~V  517 (549)
                      ..+.|.|+|++|++|+.    +.+||||+|.+.+   . .+++||+ +++ ++.||+||| +|.| .+..+....|.|+|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46789999999999985    3689999999953   1 1367899 776 469999999 6999 88766666899999


Q ss_pred             EECCCCCCceeEEEEEeccccccccccceec
Q 008910          518 WDHDTFGKRYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       518 ~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      ||++   +++||++.++++.+ ..|...++|
T Consensus       752 ~D~d---~d~iG~~~ipl~~L-~~G~r~v~L  778 (799)
T 2zkm_X          752 MEEG---NKFLGHRIIPINAL-NSGYHHLCL  778 (799)
T ss_dssp             EETT---TEEEEEEEEEGGGB-CCEEEEEEE
T ss_pred             EEeC---CCccceEeeehhhc-CCCcEEEec
Confidence            9986   67999999999998 445544443

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.41  E-value=1.7e-06  Score=70.83  Aligned_cols=90  Identities=17%  Similarity=0.184  Sum_probs=66.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce--eeec-ccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET--RNKT-RVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF  523 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~--~~kT-~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~  523 (549)
                      ...|+|...++.--+........||||.+.+.....  ..+| .++++|..|.||++|.-.+.+.  ..|.|.|++... 
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G--r~l~i~Vfh~a~-   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG--RVIQIVLMRAAE-   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT--CEEEEEEEEETT-
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC--EEEEEEEEcCCC-
Confidence            467888887766433222233579999999864211  1243 6667899999999999999854  589999996555 


Q ss_pred             CCceeEEEEEeccccccc
Q 008910          524 GKRYLSRYFQNRKTWLHD  541 (549)
Q Consensus       524 ~~d~lG~~~i~l~~l~~~  541 (549)
                        ++++.|.|.++++.+.
T Consensus        82 --~fvAn~tV~~edL~~~   97 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAER   97 (126)
T ss_dssp             --EEEEEEEEEHHHHHHH
T ss_pred             --CeeeEEEEEHHHHHhh
Confidence              8999999999999865

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.23  E-value=3.5e-06  Score=70.00  Aligned_cols=91  Identities=12%  Similarity=0.157  Sum_probs=67.3

Q ss_pred             cccEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCc--eeeec-ccccCCCCCccccEEEEEEecCCCCeEEEEEEECC
Q 008910          446 IRGVLSVTVILAENLPASD-LMGKADPYVVLTMKKSE--TRNKT-RVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~-~~g~~dpyv~v~~~~~~--~~~kT-~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~  521 (549)
                      ..+.|+|...+..--+... .....||||.|.+....  ...+| .++++|..|.||++|.-.+.+  ...|.|.|++..
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a   85 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN   85 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence            3467888887776544332 12357999999986421  12455 555679999999999998875  358999999554


Q ss_pred             CCCCceeEEEEEeccccccc
Q 008910          522 TFGKRYLSRYFQNRKTWLHD  541 (549)
Q Consensus       522 ~~~~d~lG~~~i~l~~l~~~  541 (549)
                      .   +++..|.|.+++|.+.
T Consensus        86 ~---~fVAn~tV~~edL~~~  102 (138)
T 2enj_A           86 V---DLISETTVELYSLAER  102 (138)
T ss_dssp             C---SCCEEEEEESHHHHHH
T ss_pred             C---CeeeEEEEEHHHHHhh
Confidence            4   8999999999999865

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=92.09  E-value=2.7  Score=38.06  Aligned_cols=55  Identities=22%  Similarity=0.256  Sum_probs=39.3

Q ss_pred             CeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCC----CCceeEEEEEEC
Q 008910          297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ----SSELIGCAQVRL  351 (549)
Q Consensus       297 ~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~----~d~~lG~~~v~l  351 (549)
                      ..++|.+...+.+|.|+|++.+.+...  ....|.|.+++.....    ....+|.+-+||
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL  137 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKL  137 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEES
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEc
Confidence            357888889999999999999888643  3458999998865321    123566665555

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=91.24  E-value=3.3  Score=37.46  Aligned_cols=68  Identities=15%  Similarity=0.215  Sum_probs=49.2

Q ss_pred             eeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC-----CCceeEEEEEeccc----cccccccceecC
Q 008910          482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF-----GKRYLSRYFQNRKT----WLHDGSEALRLF  549 (549)
Q Consensus       482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~-----~~d~lG~~~i~l~~----l~~~~~~~~~~~  549 (549)
                      ..++|.+.+.+.+|.|+|++.+.++..  ...-|.+++++....     ....+|-+.++|.+    .+.+|...+.+|
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~dG~~L~DG~H~L~vy  155 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRYDGTTLRDGEHDLIVY  155 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCTTSCBCCSEEEEEEEE
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccCCCcEEccCCEEEEEE
Confidence            467888888899999999999998743  334788888864422     11378999999763    367777766654

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=89.79  E-value=1.6  Score=48.81  Aligned_cols=100  Identities=15%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce----eeecccccCCCCCccccEEEEEEe---cCCCCeEEEEEEE
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWD  519 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d  519 (549)
                      ...+.|+|.++.++...   ...+-||.+.+-.+.+    ...|..+....+|.|||-++|++.   -|.+..|.|+||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            46799999999998754   2456788877632112    234544445678999999999875   3577899999998


Q ss_pred             CCCC--C----------Cc-eeEEEEEecccc---ccccccceecC
Q 008910          520 HDTF--G----------KR-YLSRYFQNRKTW---LHDGSEALRLF  549 (549)
Q Consensus       520 ~~~~--~----------~d-~lG~~~i~l~~l---~~~~~~~~~~~  549 (549)
                      ....  +          .. .+|.+.+.+-+.   +..|...+.+|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~~l~~G~~~l~lw  338 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYKDQLKTGERCLYMW  338 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCTTSBBCCEEEEEECE
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECCcCccccCCEEEEEe
Confidence            5321  1          12 899999988763   55666665543

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=87.58  E-value=3.1  Score=46.90  Aligned_cols=101  Identities=19%  Similarity=0.196  Sum_probs=68.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCce----eeecccccCCCCCccccEEEEEEe---cCCCCeEEEEEEE
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWD  519 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d  519 (549)
                      ...+.|+|.++.++.... ....+-||.+.+-.+.+    ..+|+.+ ...+|.|||-++|.+.   -|....|.|+||+
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            468999999999886433 22456798888733222    2344433 3457889999999875   3577899999998


Q ss_pred             CCCCC----C-ceeEEEEEecccc---ccccccceecC
Q 008910          520 HDTFG----K-RYLSRYFQNRKTW---LHDGSEALRLF  549 (549)
Q Consensus       520 ~~~~~----~-d~lG~~~i~l~~l---~~~~~~~~~~~  549 (549)
                      .....    . ..||.+.+.+-+.   +..|...+.+|
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~~~~L~~G~~~L~lW  469 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLW  469 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCTTCBBCCEEEEEECE
T ss_pred             ecCccCcccccceeEEeeeeeEccCCeEEcCCeEEEee
Confidence            65421    2 3799999988764   56666666554

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=87.44  E-value=4  Score=34.77  Aligned_cols=124  Identities=11%  Similarity=0.118  Sum_probs=80.9

Q ss_pred             CceeEEEEEEEEccccccc-CCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC-------CCCEEEE
Q 008910          259 KPVGTLEVKLVQAKGLTNK-DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-------STQHLVV  330 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~-------~~~~L~i  330 (549)
                      +..+.+.|+|.++.--+.. ...+..+|..-+.+.=..-+.+.|.+.. +.+|.+|-+-.|.|.-.       .+..+.+
T Consensus        15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l   93 (156)
T 2yrb_A           15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   93 (156)
T ss_dssp             SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence            3458899999887632111 0113457766665542235567777666 88999999988888421       2447889


Q ss_pred             EEEECCCCCCCceeEEEEEECcccCCCce-eEEEEEccccccccCCC--ceeeEEEEEEEEe
Q 008910          331 RIYDDEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDT--KYRGQVHLELLYC  389 (549)
Q Consensus       331 ~v~d~~~~~~d~~lG~~~v~l~~l~~~~~-~~~w~~L~~~~~~~~~~--~~~G~l~l~l~~~  389 (549)
                      +++.... ...+.+|.+.|++.++..... .....+|...     .+  ..-|.|...++..
T Consensus        94 ELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~-----~g~~~~~G~LeywiRL~  149 (156)
T 2yrb_A           94 EVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGT-----KGDIPNFGTVEYWFRLR  149 (156)
T ss_dssp             EEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBS-----SSCCTTSEEEEEEEEEE
T ss_pred             EEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcC-----CCCcceEEEEEEEEEEe
Confidence            9988754 355799999999999854322 3334455431     23  4679999988875

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=80.10  E-value=8.2  Score=43.11  Aligned_cols=91  Identities=18%  Similarity=0.257  Sum_probs=61.0

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC---CeEEeeeeCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEE
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYD  334 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d  334 (549)
                      ...+.|+|.++.++...   ..++-||.+.+-.++.   ....|+.+.-..+|.|||...|.+.  + |....|.|.+|+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            46799999999988643   3467788877753221   1234544555678999999998875  2 345689999999


Q ss_pred             CCCC--C----------CCceeEEEEEECccc
Q 008910          335 DEGI--Q----------SSELIGCAQVRLCEL  354 (549)
Q Consensus       335 ~~~~--~----------~d~~lG~~~v~l~~l  354 (549)
                      ....  +          .+..+|.+.+++-+-
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECC
Confidence            6321  1          245899999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	549
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	8e-27
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	4e-14
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	6e-23
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-12
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-21
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-11
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-21
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	9e-14
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	9e-20
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	7e-17
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	5e-17
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-15
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-16
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-11
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	4e-16
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-10
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	7e-16
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	4e-14
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	9e-16
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-13
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	1e-15
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	1e-14
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	6e-14
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	3e-14
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	1e-09
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	4e-14
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	8e-12
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	9e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-13
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-12
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-10
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-10
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-09
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	3e-09
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	4e-09
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	1e-06

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  103 bits (258), Expect = 8e-27
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 10/138 (7%)

Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
            P GTLEV LV AKGL + D +   DPY  L  R   +K+  ++ +     P WNE F F
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMG--TTPEWNETFIF 64

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLVKDLDVQRDTK 377
            V + +   L  +I+D +     + +G A + L  +   G +      +VKD       +
Sbjct: 65  TVSEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE------E 117

Query: 378 YRGQVHLELLYCPFGMEN 395
           Y+G++ + L + P G  +
Sbjct: 118 YKGEIWVALSFKPSGPSS 135

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
            G L V ++ A+ L  +D +   DPYV LT +  + +           P WN+TF F V 
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQK-SNVAEGMGTTPEWNETFIFTVS 67

Query: 507 DGLHDMLIAEVWDHDTFGK 525
           +G  ++   +++D D   +
Sbjct: 68  EGTTELKA-KIFDKDVGTE 85

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.1 bits (228), Expect = 6e-23
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 12/132 (9%)

Query: 262 GTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
               V +++A  +T     D++   DPY  LF+   P+  K+++  NND+NP+WNE FEF
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY 378
           I++      L + +  D      E +G A   +  ++ G+ K+V            +   
Sbjct: 63  ILDPNQENVLEITLM-DANYVMDETLGTATFTVSSMKVGEKKEVPFIF--------NQVT 113

Query: 379 RGQVHLELLYCP 390
              + + L    
Sbjct: 114 EMVLEMSLEVAS 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 450 LSVTVILAENLP---ASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLNPIWNQTFDFVV 505
            +V V+ A  +      D++   DPYV L +    ++R +TR  N+ +NP+WN+TF+F++
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 506 EDGLHDMLIAEVWDHDTFGKRYL 528
           +    ++L   + D +      L
Sbjct: 65  DPNQENVLEITLMDANYVMDETL 87

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (218), Expect = 1e-21
 Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
           ++K VG L+VK+++A  L   D  GKSDP+ +L +        ++ T+  +LNP WN+ F
Sbjct: 1   DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKNLNPEWNKVF 57

Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376
            F ++D     L V ++D++G +  + +G   + L  +  G+     LK         + 
Sbjct: 58  TFPIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-----EQ 111

Query: 377 KYRGQVHLEL 386
            ++G ++LE+
Sbjct: 112 AFKGVIYLEM 121

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
           G+L V V+ A +L A+D  GK+DP+ +L +     R +T  V   LNP WN+ F F ++D
Sbjct: 6   GILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKNLNPEWNKVFTFPIKD 63

Query: 508 GLHDMLIAEVWDHDTF 523
               + +  V+D D  
Sbjct: 64  IHDVLEV-TVFDEDGD 78

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.0 bits (220), Expect = 1e-21
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.3 bits (161), Expect = 9e-14
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
              L V +I A  LPA D+ G +DPYV +  +   + + +T+V    LNP++N+ F F V
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92

Query: 506 --EDGLHDMLIAEVWDHDTFGK 525
              +     L+  V+D D F K
Sbjct: 93  PYSELGGKTLVMAVYDFDRFSK 114

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.2 bits (205), Expect = 9e-20
 Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF- 318
             L V +  AK L   D  G SDPY  L + P P  E  +K+KTI   LNP WNE F F 
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
           + E +  + L V I+D +    ++ +G     + EL+   V D W KL
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKL 121

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.1 bits (184), Expect = 7e-17
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVV---LTMKKSETRNKTRVVNDCLNPIWNQTFDF 503
           R VL V V  A+NL   D  G +DPYV    +   KSE++ KT+ +   LNP WN+TF F
Sbjct: 14  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 73

Query: 504 VVEDGLHD-MLIAEVWDHDTFGK 525
            +++   D  L  E+WD D   +
Sbjct: 74  QLKESDKDRRLSVEIWDWDLTSR 96

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 5e-17
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK--KSKTINNDLNPIWNEHFEFI 319
             L V ++ AK L +++     +PY  ++  P        ++KT+   L P WN+ F + 
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 320 V---EDESTQHLVVRIYDDEGIQSS--ELIGCAQVRLCELEPGKVKDVWLKL 366
                +   + L + ++D   ++    E +G   + L           W KL
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
              L VT++ A++LP+ +     +PYV +     +  + + +T+ V   L P WNQTF +
Sbjct: 13  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 72

Query: 504 VV---EDGLHDMLIAEVWDHDTFGK 525
                 +    ML   +WD     +
Sbjct: 73  SPVHRREFRERMLEITLWDQARVRE 97

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.8 bits (180), Expect = 3e-16
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT-----------KKSKTINNDLNP 310
           G L + ++QA+ L  +D  G SDP+  +++ P   +            +++K +   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 311 IWNEHFEFIV---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
            WN+   +     E    + L V ++D +   S++ +G   + L           W  L
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.1 bits (142), Expect = 3e-11
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 15/94 (15%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM------------KKSETRNKTRVVNDCLN 494
            G L + ++ A NL   D  G +DP+V + +              +E + +T+ V   LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 495 PIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK 525
           P WNQT  +     E  +   L   VWD+D F  
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSS 110

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 4e-16
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
             L++ ++ AK   NK       PY  + V     ++KK++  NN  +P W +    IV 
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWKQPLTVIVT 62

Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDLDVQRDTKY 378
                 L  R++  + ++S  L+G A + + E       K+++V + L +    +  T+ 
Sbjct: 63  P--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTL-QLGGDKEPTET 119

Query: 379 RGQVHLEL 386
            G + + L
Sbjct: 120 IGDLSICL 127

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           +  L +TVI A+            PYV +T+     + +    N+  +P W Q    +V 
Sbjct: 5   KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE--KCNNTNSPKWKQPLTVIVT 62

Query: 507 DGLHDMLIAEVWDHDTFGK 525
                     VW H T   
Sbjct: 63  PVSKLHF--RVWSHQTLKS 79

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.4 bits (177), Expect = 7e-16
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
            TL V +++A+ L   D+ G SDPY  + +    ++  K KT       N ++NE F F 
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           +  ES +   +   + D E    +E+IG   +       G     W ++  
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICD 123

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.4 bits (164), Expect = 4e-14
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDF 503
              L+V V+ A +LP SD+ G +DPYV + +    K  ++ KT V     N ++N+ F F
Sbjct: 14  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73

Query: 504 VV--EDGLHDMLIAEVWDHDTFGK 525
            +  E      +   V D +   +
Sbjct: 74  DIPCESLEEISVEFLVLDSERGSR 97

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.7 bits (175), Expect = 9e-16
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 259 KPVGTLEVKLVQAKGL--TNKDLIGKSDPYAVLFVRPLPEKTKKSKT---INNDLNPIWN 313
           +P   L V+++  + L   NK+     DP  ++ +  +   T   +T    NN  NP W+
Sbjct: 2   RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60

Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             FEF V       +   + D +    ++ IG + +    L+ G      + L
Sbjct: 61  MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHL 110

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.9 bits (160), Expect = 1e-13
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 450 LSVTVILAENLP--ASDLMGKADPYVVLTM---KKSETRNKTRVV-NDCLNPIWNQTFDF 503
           L V +I  + LP    +     DP V++ +    +     +T V+ N+  NP W+  F+F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 504 VVEDGLHDMLIAEVWDHDTFGK 525
            V      ++   V D+D+  K
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSK 87

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 1e-15
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
               V + +A+GL   D     SDPY  + + P  +   K++ +   L+P ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 321 ---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK 368
                     L   I   +     ++IG   + L  +E  + K  +  +++ 
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGK-ADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFV 504
           R    V +  A  LPA D     +DPY+ +T + + + + KTRV+   L+P +++TF F 
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80

Query: 505 V---EDGLHDMLIAEVWDHDTFGK 525
                      L   +   D F +
Sbjct: 81  GIPYTQIQELALHFTILSFDRFSR 104

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.7 bits (167), Expect = 1e-14
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
           G L V +++   L   D  G SDP+  L+++P   K  K  ++     LNP +NE F + 
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           +   D + + L + ++D +  +S++ IG  Q+ +     G+    W + +K+ D
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKD 126

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.8 bits (162), Expect = 6e-14
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
           +G L V +I   +L A D  G +DP+V L +      + ++KT++    LNP +N+ F +
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73

Query: 504 VV--EDGLHDMLIAEVWDHDTFGK 525
            +   D     L   VWD+D    
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKS 97

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 3e-14
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
             L V  ++A      +  G  D Y    V       + ++      L+  W E     +
Sbjct: 26  AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
             E+  T  L + +   +      + G  ++ L           W +L
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 5/89 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM--KKSETRNKTRVVNDCLNPIWNQTFDFV 504
           +  L VT + A      +  G  D YV  ++  +      +T +    L+  W +     
Sbjct: 25  KAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81

Query: 505 VEDGLHDMLIAEVWDHDTFGKRYLSRYFQ 533
           + +         +           S   +
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSRHSVAGE 110

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
           G L V +++A  L   DL G SDPY    +     + KK KT    N LNP +NE   F 
Sbjct: 20  GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79

Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
           V  E      L + + D + I  +E+IG  +V     +P   ++ W +++ 
Sbjct: 80  VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLA 129

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 8e-12
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 503
            G+L+VT+I A NL A DL G +DPYV  ++    +   + KT +  + LNP +N+   F
Sbjct: 19  AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 78

Query: 504 VV--EDGLHDMLIAEVWDHDTFGK 525
            V  E   +  L   V D+D  G 
Sbjct: 79  DVAPESVENVGLSIAVVDYDCIGH 102

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 66.5 bits (161), Expect = 9e-14
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 27/142 (19%)

Query: 262 GTLEVKLVQAKGLTNKDL-----------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNP 310
           G L++K+ +A  L                    DPY  L V     +  ++ T     +P
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKTNSP 63

Query: 311 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKLVK 368
            W++ F   V +     L V      G    + +    ++  EL     +  + W+ L  
Sbjct: 64  AWHDEFVTDVCNGRKIELAVFHDAPIGYD--DFVANCTIQFEELLQNGSRHFEDWIDLEP 121

Query: 369 DLDVQRDTKYRGQVHLELLYCP 390
                      G+V++ +    
Sbjct: 122 ----------EGKVYVIIDLSG 133

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 14/92 (15%)

Query: 444 VIIRGVLSVTVILAENLPASDLM-----------GKADPYVVLTMKKSETRNKTRVVNDC 492
           V+  G+L + +  A +L  +                 DPY+ L +  S    +T      
Sbjct: 2   VVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG-QTATKQKT 60

Query: 493 LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG 524
            +P W+  F   V +G    L   V+     G
Sbjct: 61  NSPAWHDEFVTDVCNGRKIEL--AVFHDAPIG 90

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.8 bits (162), Expect = 1e-13
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
           G L V +++AK L   D+ G SDPY  + +    ++   KK+    N LNP +NE F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
           V  E  Q   +VV + D + I  ++ IG   V             W  ++ +  
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE--LRHWSDMLANPR 136

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.7 bits (154), Expect = 1e-12
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF 503
            G L+V ++ A+NL   D+ G +DPYV + + ++  R    KT +  + LNP +N++F F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 504 VV--EDGLHDMLIAEVWDHDTFGK 525
            V  E      ++  V D+D  GK
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGK 107

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.4 bits (138), Expect = 1e-10
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 507
            +L V V  A+   A     K + YV L ++    ++ T  V     P W Q F F +  
Sbjct: 2   SLLCVGVKKAKFDGA---QEKFNTYVTLKVQN--VKSTTIAVR-GSQPSWEQDFMFEINR 55

Query: 508 GLHDMLIAEVWDHDTFGKRYLSRYFQNRKTWLHDGSE 544
               + + EVW+        +   +   +T      E
Sbjct: 56  LDLGLTV-EVWNKGLIWDTMVGTVWIPLRTIRQSNEE 91

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
           L V + +AK    ++   K + Y  L V+      K +        P W + F F +   
Sbjct: 4   LCVGVKKAKFDGAQE---KFNTYVTLKVQ----NVKSTTIAVRGSQPSWEQDFMFEINRL 56

Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
               L V ++ ++G+    ++G   + L  +     +    WL L     +  D++  G 
Sbjct: 57  -DLGLTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQA-IMADSEICGT 113

Query: 382 V 382
            
Sbjct: 114 K 114

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 447 RGVLSVTVILAENLPASDLMGKADPYVVL-TMKKSETRNKTRVVNDCLNPIWNQTFDFVV 505
              L V ++ A +LPA D  G +DPYV +  +   + + +T+V    LNPI+N+TF F V
Sbjct: 17  SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 76

Query: 506 --EDGLHDMLIAEVWDHDTFGK 525
              +     L   V+D D F +
Sbjct: 77  PLAELAQRKLHFSVYDFDRFSR 98

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 12/80 (15%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMK------KSETRNKTRVVNDCLNPIWNQT--F 501
           LS+TVI  + L           YV + +       K   R K     + +NP+W +    
Sbjct: 3   LSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 502 DFVVEDGLHDMLIAEVWDHD 521
              +       L   V +  
Sbjct: 59  FEKILMPELASLRVAVMEEG 78

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 4e-09
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-----INNDLNPIWNEH-- 315
           TL + ++  + L+ +        Y  + +  LP   K+          N +NP+W E   
Sbjct: 2   TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 57

Query: 316 FEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
               +       L V + ++      + +G   + +  L  G
Sbjct: 58  VFEKILMPELASLRVAVMEEGN----KFLGHRIIPINALNSG 95

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 450 LSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVE 506
           L ++    E          + P+  + MK    ++           + P W  TFD  + 
Sbjct: 5   LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64

Query: 507 DGLHDMLIAEVWDHDTFGKRYLSRY 531
           +G    ++      D   +  +   
Sbjct: 65  EGRVIQIVLMRAAEDPMSEVTVGVS 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	549
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.86
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.86
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.84
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.78
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.78
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.77
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.77
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.75
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.74
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.73
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.72
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.72
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.71
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.71
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.7
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.68
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.68
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.67
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.67
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.67
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.67
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.66
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.66
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.65
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.65
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.65
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.64
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.64
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.64
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.64
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.62
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.61
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.61
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.59
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.58
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.58
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.55
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.36
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.29
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.21
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	94.96
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	87.28

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4e-22  Score=169.10  Aligned_cols=122  Identities=29%  Similarity=0.548  Sum_probs=106.3

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  338 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~  338 (549)
                      ++.|.|+|+|++|++|+.++..|.+||||+++++   +++++|++++++.||.|||+|.|.+.++ .+.|.|+|||++..
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~   78 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD   78 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcC---CeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence            5789999999999999999999999999999997   6789999999999999999999999876 46899999999998


Q ss_pred             CCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEe
Q 008910          339 QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       339 ~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      ++|++||++.+++.++..+.  ..|+.|...   ....+.+|+|++++.|.
T Consensus        79 ~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~---~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          79 KPPDFLGKVAIPLLSIRDGQ--PNCYVLKNK---DLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEEEECCBCEEEGGGCCSSC--CEECCCBCS---CTTSCCSSEEEEEEEEE
T ss_pred             cCcceEEEEEEEHHHCCCCC--ceEEEcccc---CCCCceeEEEEEEEEEE
Confidence            88999999999999997765  467777432   22445679999999886

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=1e-21  Score=168.91  Aligned_cols=125  Identities=34%  Similarity=0.577  Sum_probs=108.4

Q ss_pred             CceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeC-CCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 008910          259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (549)
Q Consensus       259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~  337 (549)
                      .+.|+|+|+|++|++|+.++..|++||||+++++   .+.++|++++ ++.||.|||+|.|.+.+. ...|.|+|||++.
T Consensus         7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~---~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~   82 (136)
T d1wfja_           7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDV   82 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSS
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEe---eeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecC
Confidence            5789999999999999999999999999999987   6678888876 689999999999999875 4579999999999


Q ss_pred             CCCCceeEEEEEECcccC-CCceeEEEEEccccccccCCCceeeEEEEEEEEeeccc
Q 008910          338 IQSSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM  393 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~  393 (549)
                      .++|++||++.++|.++. .+.....|+.+.+      +++..|+|++++.|.|.+.
T Consensus        83 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~------~~~~~G~i~l~l~~~p~~p  133 (136)
T d1wfja_          83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE------TTEEEEEEEEEEEEEECCS
T ss_pred             CCCCCEEEEEEEEhHHhcccCCcCcEEEEecC------CCccCEEEEEEEEEEeCCC
Confidence            989999999999999874 4555678988853      4567899999999998543

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.7e-21  Score=161.55  Aligned_cols=121  Identities=26%  Similarity=0.522  Sum_probs=106.3

Q ss_pred             eeEEEEEEEEccccccc---CCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 008910          261 VGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  337 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~  337 (549)
                      .+.|+|+|++|+||+..   |..|.+||||++.+++...++++|+++.++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            47899999999999863   456899999999998655678999999999999999999999988777789999999987


Q ss_pred             CCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      . +|++||++.++|+++..+...+.|++|.+        ...|+|++++.+.|
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~--------~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ--------VTEMVLEMSLEVAS  125 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT--------TEEEEEEEEEECCC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEccC--------CCeEEEEEEEEEEe
Confidence            5 68999999999999999999999999942        45799999998865

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.78  E-value=8.4e-19  Score=150.09  Aligned_cols=117  Identities=20%  Similarity=0.327  Sum_probs=99.3

Q ss_pred             eeEEEEEEEEcccccccC-----------CCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEE
Q 008910          261 VGTLEVKLVQAKGLTNKD-----------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLV  329 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d-----------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~  329 (549)
                      .|.|+|+|++|++|++.+           ..+.+||||+++++  .....+|+++.++.||.|||+|.|.+.+.  +.|.
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~--~~~~~~T~~~~~t~~P~Wne~f~f~v~~~--~~l~   80 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIE   80 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC--CCcCcEeeEEcCCCCccCccEEEEEEecC--CceE
Confidence            599999999999998753           34678999999997  22346899999999999999999999753  5899


Q ss_pred             EEEEECCCCCCCceeEEEEEECcccCCC--ceeEEEEEccccccccCCCceeeEEEEEEEEeec
Q 008910          330 VRIYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  391 (549)
Q Consensus       330 i~v~d~~~~~~d~~lG~~~v~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  391 (549)
                      |+|||++.+++|++||++.++|+++..+  ...+.|++|.          +.|++++.+.+.|.
T Consensus        81 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------p~G~v~l~v~~~~~  134 (136)
T d1gmia_          81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE----------PEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB----------SSCEEEEEEEEEEE
T ss_pred             EEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC----------CCcEEEEEEEEEeC
Confidence            9999999999999999999999998544  4567899984          35999999998763

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=4.6e-19  Score=153.38  Aligned_cols=110  Identities=31%  Similarity=0.492  Sum_probs=99.1

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEEC
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~  335 (549)
                      ....+.|.|+|++|+||+.++..|.+||||++++.+...+.++|++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        30 ~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~  109 (143)
T d1rsya_          30 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF  109 (143)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred             eCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEc
Confidence            345689999999999999999999999999999987667789999999999999999999987543  456899999999


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      +..+++++||++.++|.++..+...++|++|+
T Consensus       110 d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_         110 DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             CSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             CCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            99989999999999999998888889999985

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2e-18  Score=147.01  Aligned_cols=121  Identities=26%  Similarity=0.356  Sum_probs=98.1

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  340 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~  340 (549)
                      .+.|.|+|++|+++++++..+.+||||++.++   ++.++|++++++.||.|||.|.|.+.+  .+.|.|+|||++.+++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~   79 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS   79 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEEC---CeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCC
Confidence            38899999999999998888899999999997   678999999999999999999999864  4689999999999999


Q ss_pred             CceeEEEEEECcccC---CCceeE--EEEEccccccccCCCceeeEEEEEEEEe
Q 008910          341 SELIGCAQVRLCELE---PGKVKD--VWLKLVKDLDVQRDTKYRGQVHLELLYC  389 (549)
Q Consensus       341 d~~lG~~~v~l~~l~---~~~~~~--~w~~L~~~~~~~~~~~~~G~l~l~l~~~  389 (549)
                      |++||++.++|.++.   .+....  .|+.+...   .......|+|.+.+.+.
T Consensus        80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~---~~~~~~~G~L~v~l~~~  130 (133)
T d2nq3a1          80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD---KEPTETIGDLSICLDGL  130 (133)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES---SCTTSEEEEEEEEEESE
T ss_pred             CceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC---CCCceEEEEEEEEEeeE
Confidence            999999999999873   233333  44444322   23456789999988765

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1.2e-18  Score=148.51  Aligned_cols=107  Identities=35%  Similarity=0.539  Sum_probs=93.8

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC--CCCeEEeeeeCCCCCCeeccEEEEEEecCC-CCEEEEEEEECCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG  337 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~~  337 (549)
                      .+.|.|+|++|+||+.+|..|.+||||++++.+.  ...+++|+++++|.||.|||+|.|.+.... ...|.|+|||+|.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            4889999999999999999999999999999643  345789999999999999999999987542 4579999999999


Q ss_pred             CCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       338 ~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      .++|++||++.+++.++..+. .+.|++|..
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~~-~~~W~~L~~  123 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKAG-VDGWFKLLS  123 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred             CCCCcEeEEEEEeHHHcCCCC-CCeEEECCC
Confidence            999999999999999987654 578999965

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.6e-18  Score=147.26  Aligned_cols=111  Identities=30%  Similarity=0.460  Sum_probs=93.9

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEEC
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  335 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~  335 (549)
                      .+..+.|.|+|++|+||+.++..|.+||||++++.+...++++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        14 ~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~   93 (130)
T d1dqva1          14 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDF   93 (130)
T ss_dssp             CSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEEC
T ss_pred             ECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEc
Confidence            356799999999999999999999999999999976666789999999999999999999998643  456799999999


Q ss_pred             CCCCCCceeEEEEEECcc-cC-CCceeEEEEEccc
Q 008910          336 EGIQSSELIGCAQVRLCE-LE-PGKVKDVWLKLVK  368 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~-l~-~~~~~~~w~~L~~  368 (549)
                      +.+++|++||++.+++.. +. .......|++|.+
T Consensus        94 ~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          94 DRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             CSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             CCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            999999999999998653 32 2234567999863

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.7e-17  Score=140.98  Aligned_cols=121  Identities=18%  Similarity=0.322  Sum_probs=93.1

Q ss_pred             eEEEEEEEEcccccc--cCCCCCCCcEEEEEEee--CCCCeEEeeeeCC-CCCCeeccEEEEEEecCCCCEEEEEEEECC
Q 008910          262 GTLEVKLVQAKGLTN--KDLIGKSDPYAVLFVRP--LPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDE  336 (549)
Q Consensus       262 g~L~V~v~~a~~L~~--~d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~  336 (549)
                      ..|+|+|++|++|+.  .+..+.+||||++++..  ...++++|+++++ ++||.|||+|.|.+..+....|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            479999999999975  45567899999999963  2346788888755 479999999999988776778999999999


Q ss_pred             CCCCCceeEEEEEECcccCCCceeEEEEEccccccccCCCceeeEEEEEEEE
Q 008910          337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  388 (549)
Q Consensus       337 ~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  388 (549)
                      ..++|++||++.++|.++.+|   ..|++|....   ...-..+.|.+++.+
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~---g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKN---GDQHPSATLFVKISI  129 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTT---SCEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC---CEEEECCCCC---cCCCCCCEEEEEEEE
Confidence            998999999999999999765   4588885321   122245677777765

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1e-17  Score=142.27  Aligned_cols=96  Identities=30%  Similarity=0.459  Sum_probs=80.9

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~  523 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++.. ..++++|+++++|.||.|||.|.|.+...  ....|.|+|||++.+
T Consensus        17 ~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~   96 (130)
T d1dqva1          17 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF   96 (130)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred             CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCC
Confidence            478999999999999999999999999999843 34578999999999999999999998643  345799999999988


Q ss_pred             CC-ceeEEEEEecccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~  542 (549)
                      ++ ++||++.|++...+.+.
T Consensus        97 ~~d~~iG~~~i~~~~~l~~~  116 (130)
T d1dqva1          97 SRHDLIGQVVLDNLLELAEQ  116 (130)
T ss_dssp             SCCCEEEEEECCCTTGGGSS
T ss_pred             CCCceEEEEEECchhhhhcC
Confidence            76 69999999865544433

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.4e-18  Score=142.73  Aligned_cols=95  Identities=33%  Similarity=0.501  Sum_probs=85.3

Q ss_pred             ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCC
Q 008910          445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  524 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~  524 (549)
                      ...|.|.|+|++|++|+.++..|.+||||++++++  .+++|+++++|.||.|||.|.|.+.++ ...|.|+|||++..+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~   79 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDK   79 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT--EEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC--eEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCc
Confidence            35699999999999999999999999999999987  788999999999999999999999865 468999999999887


Q ss_pred             C-ceeEEEEEecccccccc
Q 008910          525 K-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~~  542 (549)
                      + ++||++.|++.++....
T Consensus        80 ~d~~lG~~~i~l~~l~~~~   98 (126)
T d2ep6a1          80 PPDFLGKVAIPLLSIRDGQ   98 (126)
T ss_dssp             EEEECCBCEEEGGGCCSSC
T ss_pred             CcceEEEEEEEHHHCCCCC
Confidence            6 59999999999986543

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=2.1e-17  Score=140.73  Aligned_cols=94  Identities=33%  Similarity=0.514  Sum_probs=81.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC-CCCeEEEEEEECCCC
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF  523 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~~~~  523 (549)
                      +.|.|+|++|+||+.++..|.+||||++++..   ...+++|+++++|.||.|||.|.|.+..+ ....|.|+|||++..
T Consensus        15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~   94 (132)
T d1a25a_          15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT   94 (132)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCC
Confidence            78999999999999999999999999999832   34578999999999999999999998754 335799999999998


Q ss_pred             CC-ceeEEEEEeccccccc
Q 008910          524 GK-RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~  541 (549)
                      ++ ++||++.|++.++...
T Consensus        95 ~~d~~iG~~~i~l~~l~~~  113 (132)
T d1a25a_          95 SRNDFMGSLSFGISELQKA  113 (132)
T ss_dssp             SCCEEEEEEEEEHHHHTTC
T ss_pred             CCCcEeEEEEEeHHHcCCC
Confidence            76 5999999999998543

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.2e-18  Score=149.01  Aligned_cols=109  Identities=23%  Similarity=0.441  Sum_probs=93.3

Q ss_pred             eeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCC-----------CeEEeeeeCCCCCCeeccEEEEEEec---CCCC
Q 008910          261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE-----------KTKKSKTINNDLNPIWNEHFEFIVED---ESTQ  326 (549)
Q Consensus       261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~kT~~~~~t~nP~w~e~f~f~v~~---~~~~  326 (549)
                      .|.|.|+|++|+||+.++..|.+||||++++.+...           ++++|++++++.||.|||+|.|....   ....
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            489999999999999999999999999999953322           23578889999999999999997432   2456


Q ss_pred             EEEEEEEECCCCCCCceeEEEEEECcccCCCceeEEEEEcccc
Q 008910          327 HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  369 (549)
Q Consensus       327 ~L~i~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~~  369 (549)
                      .|.|.|||++.+++|++||++.++|.++..+.....|++|.+.
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            8999999999999999999999999999877778899999754

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=6.2e-17  Score=135.85  Aligned_cols=118  Identities=18%  Similarity=0.274  Sum_probs=92.7

Q ss_pred             eEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910          262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (549)
Q Consensus       262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  341 (549)
                      +.|.|+|++|++|..++   +.||||++.++   +++.+|.+++ +.||.|||+|.|.+.++ .+.|.|+|||++.. .|
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~---~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~d   72 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ---NVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-WD   72 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEET---TEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-CE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeC---CEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-CC
Confidence            68999999999999876   67999999997   6788888876 56999999999999877 46899999999876 69


Q ss_pred             ceeEEEEEECcccCC--CceeEEEEEccccccc------cCCCceeeEEEEEEEE
Q 008910          342 ELIGCAQVRLCELEP--GKVKDVWLKLVKDLDV------QRDTKYRGQVHLELLY  388 (549)
Q Consensus       342 ~~lG~~~v~l~~l~~--~~~~~~w~~L~~~~~~------~~~~~~~G~l~l~l~~  388 (549)
                      ++||++.|+|+++..  ......|+.|......      .........|.++++|
T Consensus        73 ~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          73 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             cceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            999999999999853  3446789999653311      1112335577777776

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=6.1e-17  Score=139.78  Aligned_cols=102  Identities=28%  Similarity=0.406  Sum_probs=84.9

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  523 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~  523 (549)
                      .+.|.|+|++|+||+..+..|.+||||++++.. ...+++|++++++.||.|||.|.|.+...  ....|.|+|||++..
T Consensus        33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~  112 (143)
T d1rsya_          33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  112 (143)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCC
Confidence            378999999999999999889999999999843 34578999999999999999999988633  456899999999988


Q ss_pred             CC-ceeEEEEEeccccccccccceecC
Q 008910          524 GK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      ++ ++||++.|++.++... .....||
T Consensus       113 ~~~~~iG~~~i~L~~~~~~-~~~~~W~  138 (143)
T d1rsya_         113 SKHDIIGEFKVPMNTVDFG-HVTEEWR  138 (143)
T ss_dssp             SCCEEEEEEEEEGGGCCCS-SCEEEEE
T ss_pred             CCCcEEEEEEEEchhccCC-CCCccEE
Confidence            76 5999999999998433 3344554

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-16  Score=136.71  Aligned_cols=110  Identities=20%  Similarity=0.270  Sum_probs=90.9

Q ss_pred             ccCceeEEEEEEEEcccccccCCCC-CCCcEEEEEEeeCCCCeEEeeeeCCCCCCeeccEEEEEEecC---CCCEEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRI  332 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v  332 (549)
                      |....+.|.|+|++|+||+.++..+ .+||||++.+.+.+.+.++|++++++.||.|||+|.|.....   ....|.|+|
T Consensus        17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V   96 (138)
T d1ugka_          17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI   96 (138)
T ss_dssp             EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence            3456789999999999999988765 479999999987777789999999999999999999974322   245799999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCC-ceeEEEEEc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKL  366 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~-~~~~~w~~L  366 (549)
                      ||++.+++|++||++.++|+++... .....|..+
T Consensus        97 ~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_          97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             EECCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            9999999999999999999998543 334456554

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.9e-17  Score=137.74  Aligned_cols=108  Identities=16%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC-CCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  334 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d  334 (549)
                      ....+.|.|+|++|++|..   .|.+||||++++.+.. ...++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        22 ~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d   98 (138)
T d1wfma_          22 DCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT   98 (138)
T ss_dssp             ETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred             CCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEee
Confidence            3456899999999999953   4678999999997543 2357899999999999999999998643  45689999999


Q ss_pred             CCCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       335 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      ++.++++++||++.|+|.++..+...+.|+.|.+
T Consensus        99 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_          99 CDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             ecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            9999999999999999999987777899999964

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.8e-17  Score=135.40  Aligned_cols=109  Identities=24%  Similarity=0.427  Sum_probs=86.6

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCC--CCeEEeeeeCCCCCCeeccEEEEE-EecC--CCCEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRI  332 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~v  332 (549)
                      .+..+.|.|+|++|+||+.++..+.+||||++++.+..  ..+++|++++++.||.|||+|.|. +...  ....|.|+|
T Consensus        10 ~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v   89 (125)
T d2bwqa1          10 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL   89 (125)
T ss_dssp             ETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred             ECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEE
Confidence            34568999999999999999988999999999997543  346899999999999999999996 4322  345799999


Q ss_pred             EECCCC--CCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          333 YDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       333 ~d~~~~--~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      ||++..  .++++||++.++|+++..... .+|++|+
T Consensus        90 ~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          90 WDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             EEC-------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             EECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence            999975  345699999999999875543 5799983

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=5.1e-17  Score=140.27  Aligned_cols=101  Identities=29%  Similarity=0.476  Sum_probs=82.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC------------ceeeecccccCCCCCccccEEEEEEe---cCCCCe
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKS------------ETRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDM  512 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~------------~~~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~  512 (549)
                      |.|.|+|++|+||+..+..|.+||||++++...            ..++||++++++.||.|||.|.|..-   +.....
T Consensus        18 ~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~   97 (142)
T d1rh8a_          18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT   97 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCE
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCE
Confidence            679999999999999999999999999998321            13468999999999999999999742   224568


Q ss_pred             EEEEEEECCCCCC-ceeEEEEEeccccccccccceecC
Q 008910          513 LIAEVWDHDTFGK-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       513 l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      |.|+|||++.+++ ++||++.|++.++... .....||
T Consensus        98 L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~-~~~~~W~  134 (142)
T d1rh8a_          98 LEVTVWDYDRFSSNDFLGEVLIDLSSTSHL-DNTPRWY  134 (142)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEETTSCGGG-TTCCEEE
T ss_pred             EEEEEEEecCCCCCeeeEEEEEEhHHcCCC-CCceEEE
Confidence            9999999998877 5999999999998544 3344554

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.67  E-value=6.6e-17  Score=138.37  Aligned_cols=100  Identities=28%  Similarity=0.426  Sum_probs=85.4

Q ss_pred             cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeeccccc-CCCCCccccEEEEEEecCCCCeEEEEEEECCCCC
Q 008910          446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  524 (549)
Q Consensus       446 ~~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~  524 (549)
                      ..|.|.|+|++|++|+..+..|.+||||+++++.  .+++|++++ ++.||.|||.|.|.+.++ ...|+|+|||++..+
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~--~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~   84 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGT   84 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--CEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCT
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee--eeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCC
Confidence            4699999999999999999999999999999886  566777776 589999999999999864 456999999999887


Q ss_pred             C-ceeEEEEEeccccccccccceec
Q 008910          525 K-RYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       525 ~-d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      + ++||++.|++.+++..+.....|
T Consensus        85 ~d~~iG~~~i~L~~l~~~~~~~~~~  109 (136)
T d1wfja_          85 EDDAVGEATIPLEPVFVEGSIPPTA  109 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEE
T ss_pred             CCCEEEEEEEEhHHhcccCCcCcEE
Confidence            6 59999999999987765544433

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=4.1e-16  Score=133.56  Aligned_cols=92  Identities=28%  Similarity=0.413  Sum_probs=79.0

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..+.+||||++++.   ....++||++++++.||.|||.|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~   93 (137)
T d2cm5a1          14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD   93 (137)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCC
Confidence            47899999999999998888899999999983   234568999999999999999999998643  3458999999999


Q ss_pred             CCCC-ceeEEEEEecccc
Q 008910          522 TFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l  538 (549)
                      ..++ ++||++.+++.++
T Consensus        94 ~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          94 IGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             SSSCCEEEEEEEEETTCC
T ss_pred             CCCCCCEEEEEEeCcccc
Confidence            8776 5999999999864

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.2e-16  Score=131.92  Aligned_cols=101  Identities=27%  Similarity=0.463  Sum_probs=79.3

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCceeeecccccCCCCCccccEEEEE-EecC--CCCeEEEEEEEC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFV-VEDG--LHDMLIAEVWDH  520 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~--~~~~l~i~V~d~  520 (549)
                      .+.|.|+|++|+||+..+..+.+||||++++.   ....+++|++++++.||.|||.|.|. +...  ....|.|+|||+
T Consensus        13 ~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~   92 (125)
T d2bwqa1          13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   92 (125)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEEC
Confidence            37899999999999999888999999999983   23456899999999999999999996 4322  345799999999


Q ss_pred             CCCC--C-ceeEEEEEeccccccccccceecC
Q 008910          521 DTFG--K-RYLSRYFQNRKTWLHDGSEALRLF  549 (549)
Q Consensus       521 ~~~~--~-d~lG~~~i~l~~l~~~~~~~~~~~  549 (549)
                      +.++  + ++||++.|+++++..++.  ..||
T Consensus        93 ~~~~~~~~~~iG~~~i~l~~~~~~~~--~~Wy  122 (125)
T d2bwqa1          93 ARVREEESEFLGEILIELETALLDDE--PHWY  122 (125)
T ss_dssp             -------CEEEEEEEEEGGGCCCSSC--EEEE
T ss_pred             CCCCCCCCeeEEEEEEEchhcCCCCC--CEEE
Confidence            9764  2 499999999999865543  3454

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-16  Score=134.85  Aligned_cols=95  Identities=23%  Similarity=0.439  Sum_probs=82.9

Q ss_pred             ccEEEEEEEEeecCCCCC---CCCCCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCC
Q 008910          447 RGVLSVTVILAENLPASD---LMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT  522 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~---~~g~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~  522 (549)
                      ++.|.|+|++|+||+...   ..|.+||||++.+++ ...+++|+++.++.||.|||+|.|.+.++....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            478999999999999743   457899999999965 3467899999999999999999999987777789999999998


Q ss_pred             CCCceeEEEEEeccccccc
Q 008910          523 FGKRYLSRYFQNRKTWLHD  541 (549)
Q Consensus       523 ~~~d~lG~~~i~l~~l~~~  541 (549)
                      .++++||++.++++++...
T Consensus        82 ~~d~~lG~~~i~L~~l~~~  100 (126)
T d1rlwa_          82 VMDETLGTATFTVSSMKVG  100 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCTT
T ss_pred             CCCCeEEEEEEEHHHccCC
Confidence            7778999999999998544

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.5e-16  Score=134.03  Aligned_cols=92  Identities=25%  Similarity=0.325  Sum_probs=72.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..+.+||||++++..   ...+++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~   93 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE   93 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCC
Confidence            378999999999999999888999999999832   22467899999999999999999998643  3347999999999


Q ss_pred             CCCC-ceeEEEEEecccc
Q 008910          522 TFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l  538 (549)
                      .+++ ++||++.|++.+.
T Consensus        94 ~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          94 RGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             TTSCCEEEEEEEESTTCC
T ss_pred             CCCCCCEEEEEEEcchhC
Confidence            8876 5999999999764

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.2e-16  Score=136.57  Aligned_cols=112  Identities=30%  Similarity=0.443  Sum_probs=93.1

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  332 (549)
                      +.+..|.|.|+|++|+||+..+..+.+||||++++.+.+..  .++|++++++.||+|||+|.|.+...  ....|.|.|
T Consensus        20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v   99 (157)
T d1uowa_          20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV   99 (157)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence            34567999999999999999998899999999999864433  46799999999999999999998654  345899999


Q ss_pred             EECCCCCCCceeEEEEEECccc------------CCCceeEEEEEccc
Q 008910          333 YDDEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVK  368 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l------------~~~~~~~~w~~L~~  368 (549)
                      ||++.++++++||++.+++...            .++.....|+.|..
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         100 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             EECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             cccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            9999999999999999999753            23445567888754

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.1e-16  Score=131.65  Aligned_cols=96  Identities=24%  Similarity=0.345  Sum_probs=78.5

Q ss_pred             ccEEEEEEEEeecCCCCCCCC-CCCcEEEEEEeC-CceeeecccccCCCCCccccEEEEEE-ecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMG-KADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVV-EDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g-~~dpyv~v~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v-~~~--~~~~l~i~V~d~~  521 (549)
                      ...|.|+|++|+||+..+..+ .+||||++++.. ...+++|++++++.||.|||.|.|.. ...  ....|.|+|||++
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d  100 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECC
Confidence            367999999999999887665 479999999842 24578899999999999999999973 321  2457999999999


Q ss_pred             CCCC-ceeEEEEEecccccccc
Q 008910          522 TFGK-RYLSRYFQNRKTWLHDG  542 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~  542 (549)
                      .+++ ++||++.|+|+++....
T Consensus       101 ~~~~~~~iG~~~i~L~~~~~~~  122 (138)
T d1ugka_         101 RFSRDDIIGEVLIPLSGIELSE  122 (138)
T ss_dssp             SSCCCCCCEEEEEECTTCCCTT
T ss_pred             CCCCCcEEEEEEEEcccccCCC
Confidence            8876 69999999999984433

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=4.6e-16  Score=133.33  Aligned_cols=98  Identities=24%  Similarity=0.305  Sum_probs=78.1

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  332 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v  332 (549)
                      +.+..|.|.|+|++|+||+.++..+.+||||++++.+.+..  +++|++++++.||.|||+|.|.+...  ....|.|.|
T Consensus        10 Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v   89 (138)
T d1w15a_          10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV   89 (138)
T ss_dssp             EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred             EcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEE
Confidence            33556899999999999999998899999999999754333  46799999999999999999997543  344699999


Q ss_pred             EECCCCCCCceeEEEEEECccc
Q 008910          333 YDDEGIQSSELIGCAQVRLCEL  354 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l  354 (549)
                      ||++.++++++||+|.+++...
T Consensus        90 ~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          90 LDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             EECCTTSCCEEEEEEEESTTCC
T ss_pred             EeCCCCCCCCEEEEEEEcchhC
Confidence            9999999999999999999753

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=8e-16  Score=134.77  Aligned_cols=92  Identities=29%  Similarity=0.487  Sum_probs=79.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~  521 (549)
                      .+.|.|+|++|+||+..+..+.+||||++++...   ..+++|++++++.||+|||.|.|.+...  ....|.|+|||++
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~  103 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccC
Confidence            3789999999999999998899999999998532   2356899999999999999999998754  3458999999999


Q ss_pred             CCCC-ceeEEEEEecccc
Q 008910          522 TFGK-RYLSRYFQNRKTW  538 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l  538 (549)
                      .+++ ++||++.|++.+.
T Consensus       104 ~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_         104 KIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             SSSCCCEEEEEEEETTCC
T ss_pred             CCCCCceeEEEEEecccC
Confidence            9876 5999999999763

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=9.1e-16  Score=131.35  Aligned_cols=108  Identities=23%  Similarity=0.408  Sum_probs=89.3

Q ss_pred             cCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeC--CCCeEEeeeeCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 008910          258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  333 (549)
Q Consensus       258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~  333 (549)
                      .+..|.|.|+|++|+||+.++..+.+||||++++.+.  ...+++|++++++.||.|||+|.|.+...  ....|.|.||
T Consensus        11 ~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~   90 (137)
T d2cm5a1          11 STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVW   90 (137)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred             ECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEee
Confidence            3567999999999999999998899999999999643  24467899999999999999999998643  3558999999


Q ss_pred             ECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       334 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      |++..+++++||+|.+++.++.  ...++|+.|.
T Consensus        91 ~~~~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~  122 (137)
T d2cm5a1          91 DYDIGKSNDYIGGCQLGISAKG--ERLKHWYECL  122 (137)
T ss_dssp             ECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHH
T ss_pred             eCCCCCCCCEEEEEEeCccccC--cchhhhhhHh
Confidence            9999999999999999997642  2234566554

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.3e-16  Score=131.78  Aligned_cols=91  Identities=25%  Similarity=0.324  Sum_probs=80.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCC-
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-  525 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~-  525 (549)
                      .+.|.|+|++|++++..+..+.+||||++.+++  ++++|+++++|.||.|||.|.|.+.+  .+.|.|+|||++.+++ 
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d   80 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG--QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSD   80 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETT--EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC--eEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCC
Confidence            378999999999999988888999999999987  67899999999999999999999874  4689999999999887 


Q ss_pred             ceeEEEEEeccccccc
Q 008910          526 RYLSRYFQNRKTWLHD  541 (549)
Q Consensus       526 d~lG~~~i~l~~l~~~  541 (549)
                      ++||++.+++.+++..
T Consensus        81 ~~iG~~~i~L~~l~~~   96 (133)
T d2nq3a1          81 VLLGTAALDIYETLKS   96 (133)
T ss_dssp             EEEEEEEEEHHHHHHH
T ss_pred             ceEEEEEEEHHHhhhh
Confidence            5999999999998653

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.62  E-value=7.1e-16  Score=131.55  Aligned_cols=99  Identities=19%  Similarity=0.352  Sum_probs=84.3

Q ss_pred             ccccEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeE
Q 008910          445 IIRGVLSVTVILAENLPASD-----------LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDML  513 (549)
Q Consensus       445 ~~~g~L~v~v~~a~~L~~~~-----------~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l  513 (549)
                      ..+|.|.|+|.+|++|++.+           ..+.+||||++++++ ....+|+++.++.||.|||.|.|.+.+.  ..|
T Consensus         3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~-~~~~~T~~~~~t~~P~Wne~f~f~v~~~--~~l   79 (136)
T d1gmia_           3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKTNSPAWHDEFVTDVCNG--RKI   79 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred             cEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCC-CcCcEeeEEcCCCCccCccEEEEEEecC--Cce
Confidence            35799999999999998753           456789999999976 3456899999999999999999999753  579


Q ss_pred             EEEEEECCCCCC-ceeEEEEEeccccccccccce
Q 008910          514 IAEVWDHDTFGK-RYLSRYFQNRKTWLHDGSEAL  546 (549)
Q Consensus       514 ~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~  546 (549)
                      .|+|||++.+++ ++||++.|++++++.+++...
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~  113 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF  113 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEE
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcce
Confidence            999999999876 599999999999988765543

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=3.5e-15  Score=124.40  Aligned_cols=109  Identities=13%  Similarity=0.258  Sum_probs=86.0

Q ss_pred             EEEEEEEcccccccCCCCCCCcEEEEEEeeC--CCCeEEeeeeCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 008910          264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  341 (549)
Q Consensus       264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d  341 (549)
                      +.|.++.+..++  ...+.+||||++++.+.  ....++|+++++|+||+|||+|.|.+.+  .+.|.|.|||+|    +
T Consensus         7 ~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d----d   78 (123)
T d1bdya_           7 ISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----T
T ss_pred             EEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----c
Confidence            444445555443  44688999999999742  1234678889999999999999999975  458999999976    6


Q ss_pred             ceeEEEEEECccc-----CCCceeEEEEEccccccccCCCceeeEEEEEEEEee
Q 008910          342 ELIGCAQVRLCEL-----EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  390 (549)
Q Consensus       342 ~~lG~~~v~l~~l-----~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  390 (549)
                      +++|.+.+++.++     ..+...+.|+.|.          ..|+|++++.|.+
T Consensus        79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~----------~~Gkl~l~v~~f~  122 (123)
T d1bdya_          79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ----------PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred             cccCccEEehhheeeccccCCCcccEEEeCC----------CCEEEEEEEEEec
Confidence            8999999999987     3567889999983          4699999999974

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.1e-15  Score=127.76  Aligned_cols=99  Identities=21%  Similarity=0.330  Sum_probs=78.5

Q ss_pred             cEEEEEEEEeecCCCC--CCCCCCCcEEEEEEeC---CceeeecccccCC-CCCccccEEEEEEecCCCCeEEEEEEECC
Q 008910          448 GVLSVTVILAENLPAS--DLMGKADPYVVLTMKK---SETRNKTRVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWDHD  521 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~--~~~g~~dpyv~v~~~~---~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~~~~l~i~V~d~~  521 (549)
                      ..|.|+|++|++|+..  +..+.+||||++++.+   ...+++|++++++ .||.|||+|+|.+..+....|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            4799999999999754  4577899999999843   3467889887654 79999999999998777778999999999


Q ss_pred             CCCC-ceeEEEEEecccccccccccee
Q 008910          522 TFGK-RYLSRYFQNRKTWLHDGSEALR  547 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~  547 (549)
                      ..++ ++||++.|+++++. .|...++
T Consensus        84 ~~~~d~~iG~~~i~l~~l~-~g~~~~~  109 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLK-QGYRHVH  109 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBC-CEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccC-CCCEEEE
Confidence            9886 59999999999884 3433333

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.9e-15  Score=125.76  Aligned_cols=90  Identities=16%  Similarity=0.151  Sum_probs=76.2

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC--CceeeecccccCCCCCccccEEEEEEecC--CCCeEEEEEEECCC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK--SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT  522 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~  522 (549)
                      .+.|.|+|++|+||+.   .|.+||||++++..  ...+++|++++++.||.|||.|.|.+...  ....|.|+|||++.
T Consensus        25 ~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~  101 (138)
T d1wfma_          25 KAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc
Confidence            3789999999999964   46789999999953  23467899999999999999999998643  35689999999998


Q ss_pred             CCC-ceeEEEEEeccccc
Q 008910          523 FGK-RYLSRYFQNRKTWL  539 (549)
Q Consensus       523 ~~~-d~lG~~~i~l~~l~  539 (549)
                      +++ ++||++.|++.++-
T Consensus       102 ~~~~~~iG~~~i~L~~l~  119 (138)
T d1wfma_         102 FSRHSVAGELRLGLDGTS  119 (138)
T ss_dssp             SCTTSCSEEEEEESSSSS
T ss_pred             cccceeeeEEEEEhHHcc
Confidence            886 59999999999983

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=2.6e-15  Score=125.82  Aligned_cols=89  Identities=24%  Similarity=0.323  Sum_probs=77.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCce
Q 008910          448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKRY  527 (549)
Q Consensus       448 g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~  527 (549)
                      +.|.|+|.+|++|..++   ..||||++++++  .+.+|.+++ +.||.|||.|.|.+.++ ...|.|+|||++..++++
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~--~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~   74 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN--VKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTM   74 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETT--EEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCC--EEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcc
Confidence            57999999999999866   579999999986  788888875 56999999999999876 467999999998877679


Q ss_pred             eEEEEEeccccccccc
Q 008910          528 LSRYFQNRKTWLHDGS  543 (549)
Q Consensus       528 lG~~~i~l~~l~~~~~  543 (549)
                      ||++.|+++++...+.
T Consensus        75 lG~~~I~L~~l~~~~~   90 (128)
T d2cjta1          75 VGTVWIPLRTIRQSNE   90 (128)
T ss_dssp             EEEEEEEGGGSCBCSS
T ss_pred             eEEEEEEehhhccCCC
Confidence            9999999999976543

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=6.1e-16  Score=133.76  Aligned_cols=93  Identities=31%  Similarity=0.381  Sum_probs=79.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEec--CCCCeEEEEEEECC
Q 008910          447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  521 (549)
Q Consensus       447 ~g~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~  521 (549)
                      .|.|.|+|++|+||+..+..+.+||||++++...   ..+++|++++++.||.|||.|.|.+..  .....|.|+|||++
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~   98 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD   98 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecC
Confidence            4889999999999999888889999999998532   336789999999999999999998763  23457999999999


Q ss_pred             CCCC-ceeEEEEEeccccc
Q 008910          522 TFGK-RYLSRYFQNRKTWL  539 (549)
Q Consensus       522 ~~~~-d~lG~~~i~l~~l~  539 (549)
                      ..++ ++||++.|+++.+.
T Consensus        99 ~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          99 CIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             SSSCCEEEEECCCSSCTTC
T ss_pred             CCCCCcEEEEEEECchHcC
Confidence            8876 59999999998763

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=3.3e-16  Score=135.50  Aligned_cols=110  Identities=28%  Similarity=0.447  Sum_probs=90.2

Q ss_pred             ccCceeEEEEEEEEcccccccCCCCCCCcEEEEEEeeCCCC--eEEeeeeCCCCCCeeccEEEEEEec--CCCCEEEEEE
Q 008910          257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI  332 (549)
Q Consensus       257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v  332 (549)
                      |.+..|.|.|+|++|+||+..+..+.+||||++++.+.+..  +++|++++++.||.|||+|.|.+..  .....|.|.|
T Consensus        15 Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v   94 (145)
T d1dqva2          15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV   94 (145)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred             EcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEE
Confidence            44567999999999999999998899999999999754332  5789999999999999999998753  2445799999


Q ss_pred             EECCCCCCCceeEEEEEECcccCCCceeEEEEEcc
Q 008910          333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  367 (549)
Q Consensus       333 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~  367 (549)
                      ||++..+++++||++.+++..+.. ....+|+.|.
T Consensus        95 ~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~  128 (145)
T d1dqva2          95 VDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEML  128 (145)
T ss_dssp             EECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSS
T ss_pred             EecCCCCCCcEEEEEEECchHcCc-hhhHHHHHHH
Confidence            999999999999999999987532 2235676654

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.6e-12  Score=104.95  Aligned_cols=95  Identities=21%  Similarity=0.392  Sum_probs=71.7

Q ss_pred             EEEEEEEEcccccccCCCCCCCcEEEEEEee---CCCCeEEeee--eCCCCCCeeccE-EEE-EEecCCCCEEEEEEEEC
Q 008910          263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP---LPEKTKKSKT--INNDLNPIWNEH-FEF-IVEDESTQHLVVRIYDD  335 (549)
Q Consensus       263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~~--~~~t~nP~w~e~-f~f-~v~~~~~~~L~i~v~d~  335 (549)
                      .|.|+|++|++|+.+    +.||||++++..   +..++++|++  ..++.||.|||+ |.| .+..+....|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999865    479999999852   1233445544  477899999976 444 34445555899999998


Q ss_pred             CCCCCCceeEEEEEECcccCCCceeEEEEEccc
Q 008910          336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  368 (549)
Q Consensus       336 ~~~~~d~~lG~~~v~l~~l~~~~~~~~w~~L~~  368 (549)
                      +    |++||++.+|++.+..|   ..+++|..
T Consensus        78 d----~~~lG~~~ipl~~l~~G---yR~vpL~~  103 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG---YHHLCLHS  103 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE---EEEEEEEC
T ss_pred             C----CCEEEEEEEEcccCcCC---ceEEEccC
Confidence            5    78999999999999876   35667753

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.7e-12  Score=103.53  Aligned_cols=92  Identities=23%  Similarity=0.385  Sum_probs=68.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeC----Cceeeeccc--ccCCCCCccccE-EEEE-EecCCCCeEEEEEEEC
Q 008910          449 VLSVTVILAENLPASDLMGKADPYVVLTMKK----SETRNKTRV--VNDCLNPIWNQT-FDFV-VEDGLHDMLIAEVWDH  520 (549)
Q Consensus       449 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~----~~~~~kT~~--~~~t~nP~wne~-f~f~-v~~~~~~~l~i~V~d~  520 (549)
                      .|.|+|++|++|+..    ..||||++++.+    ...+++|++  ..++.||.|||. |.|. +..+....|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            589999999999865    369999999843    123344443  357899999976 4443 4445556899999997


Q ss_pred             CCCCCceeEEEEEeccccccccccceec
Q 008910          521 DTFGKRYLSRYFQNRKTWLHDGSEALRL  548 (549)
Q Consensus       521 ~~~~~d~lG~~~i~l~~l~~~~~~~~~~  548 (549)
                      +   +++||++.++++.+ ..|.+.++|
T Consensus        78 d---~~~lG~~~ipl~~l-~~GyR~vpL  101 (122)
T d2zkmx2          78 G---NKFLGHRIIPINAL-NSGYHHLCL  101 (122)
T ss_dssp             T---TEEEEEEEEEGGGB-CCEEEEEEE
T ss_pred             C---CCEEEEEEEEcccC-cCCceEEEc
Confidence            5   57999999999887 555555554

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=2.1e-11  Score=101.10  Aligned_cols=84  Identities=13%  Similarity=0.188  Sum_probs=65.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---ceeeecccccCCCCCccccEEEEEEecCCCCeEEEEEEECCCCCCc
Q 008910          450 LSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKR  526 (549)
Q Consensus       450 L~v~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d  526 (549)
                      +.+.++.+..++  ...+.+||||++++...   .+.++|.++++|+||+|||+|+|.+.+  ...|.|.|||++   ++
T Consensus         7 ~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d~   79 (123)
T d1bdya_           7 ISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---ED   79 (123)
T ss_dssp             EEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---TE
T ss_pred             EEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---cc
Confidence            444445444443  44678999999999542   234678888999999999999999975  457999999976   46


Q ss_pred             eeEEEEEecccccc
Q 008910          527 YLSRYFQNRKTWLH  540 (549)
Q Consensus       527 ~lG~~~i~l~~l~~  540 (549)
                      ++|.+.+++.++..
T Consensus        80 ~~g~~~i~l~~l~~   93 (123)
T d1bdya_          80 PMSEVTVGVSVLAE   93 (123)
T ss_dssp             EEEEEEEEHHHHHH
T ss_pred             ccCccEEehhheee
Confidence            99999999998865