Citrus Sinensis ID: 008915
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| 225447101 | 583 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.931 | 0.746 | 0.0 | |
| 255568683 | 583 | conserved hypothetical protein [Ricinus | 0.987 | 0.929 | 0.728 | 0.0 | |
| 356554456 | 584 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.933 | 0.714 | 0.0 | |
| 449453527 | 591 | PREDICTED: uncharacterized protein LOC10 | 0.923 | 0.857 | 0.729 | 0.0 | |
| 164564753 | 522 | CM0545.530.nc [Lotus japonicus] | 0.870 | 0.915 | 0.715 | 0.0 | |
| 42569568 | 585 | Lycopene beta/epsilon cyclase protein [A | 0.992 | 0.931 | 0.655 | 0.0 | |
| 357141364 | 593 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.895 | 0.642 | 0.0 | |
| 308044513 | 593 | uncharacterized protein LOC100502482 [Ze | 0.918 | 0.849 | 0.656 | 0.0 | |
| 326507200 | 611 | predicted protein [Hordeum vulgare subsp | 0.918 | 0.824 | 0.649 | 0.0 | |
| 115476458 | 614 | Os08g0422000 [Oryza sativa Japonica Grou | 0.921 | 0.824 | 0.646 | 0.0 |
| >gi|225447101|ref|XP_002273536.1| PREDICTED: uncharacterized protein LOC100241486 [Vitis vinifera] gi|297739195|emb|CBI28846.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/587 (74%), Positives = 490/587 (83%), Gaps = 44/587 (7%)
Query: 1 MVFLQLRHFN-GVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG 59
MV LQL+ N G+S PS +R+ + R +CLQ QA +PSRT+RIMESISVSGEVGGAG
Sbjct: 1 MVVLQLQQPNYGISQGPSLQR-RRQRALRTVCLQTQA-LPSRTQRIMESISVSGEVGGAG 58
Query: 60 GAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGT 119
GAYSY ALKRLDQ+WS+ICS QTV QE ++VVSS GLF S + DKAV TFDV+VCGGT
Sbjct: 59 GAYSYSALKRLDQLWSSICSAQTVYQEPRKVVSSVPGLFKHSAVDDKAVETFDVLVCGGT 118
Query: 120 LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF 179
LGIFIATALS KGLRV +VERN LKGREQEWNISRKELLELVE+GILVEDDI + TA KF
Sbjct: 119 LGIFIATALSSKGLRVGVVERNILKGREQEWNISRKELLELVEAGILVEDDIKQVTAAKF 178
Query: 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV 239
NPNRCGFEGKGEIWVEDILNLGVSP KLIE+VK+RF SLGGVIFEGYSVS+IC YE+AAV
Sbjct: 179 NPNRCGFEGKGEIWVEDILNLGVSPVKLIEVVKRRFTSLGGVIFEGYSVSNICIYEDAAV 238
Query: 240 LLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSS 299
L LAEG ILS+ L+IDAMGNFSPVVKQ+R GRKPDGVCLVVGSCARGF +NSTSDVIYSS
Sbjct: 239 LQLAEGNILSTRLLIDAMGNFSPVVKQMRGGRKPDGVCLVVGSCARGFTNNSTSDVIYSS 298
Query: 300 SSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQG 359
SSVKKVG+SEVQ FWEAFPAGSGP+DRTTYMFTY+DPQ PKLE+LLE YWD+MPEYQG
Sbjct: 299 SSVKKVGESEVQYFWEAFPAGSGPVDRTTYMFTYVDPQPKCPKLEDLLEDYWDMMPEYQG 358
Query: 360 VTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419
V+L++L+I RV++GIFPTYRDSPLPAAF+RILQFGDASGIQSPVSFGGFGSLTRHL RLS
Sbjct: 359 VSLEDLQILRVVFGIFPTYRDSPLPAAFDRILQFGDASGIQSPVSFGGFGSLTRHLERLS 418
Query: 420 TGVYEAVRGDFVDSYSLSLLNPYM------------------------------------ 443
TG+YEA+ G+F+DSY+LSLLNPYM
Sbjct: 419 TGIYEAITGNFLDSYNLSLLNPYMPNLSAAWLFQRAMSAKQQYDVSPDFISELLYVNFQS 478
Query: 444 --KLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFF 501
+LGDPVLRPFLQ DVI+FGPL KTLGLVML+KPQI+PSIFKQVG+PVL+DWSGHF
Sbjct: 479 MQRLGDPVLRPFLQ---DVIQFGPLVKTLGLVMLSKPQILPSIFKQVGVPVLLDWSGHFV 535
Query: 502 MLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYK 548
MLGYYT LSTF DP IR L+NAFP +MKY+W RYLEAWKYG+GLDYK
Sbjct: 536 MLGYYTFLSTFIDPAIRPLINAFPAKMKYKWKRYLEAWKYGAGLDYK 582
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568683|ref|XP_002525313.1| conserved hypothetical protein [Ricinus communis] gi|223535372|gb|EEF37046.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/590 (72%), Positives = 478/590 (81%), Gaps = 48/590 (8%)
Query: 1 MVFLQLRHFNGVSHFPSQ---VHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGG 57
M +QL NG+ +P + +++ +QR + LQ QA VPSRT+RIMESISVS EVGG
Sbjct: 1 MEVVQLGQCNGLFSYPKLSPLLQRRKERTQRSMSLQAQA-VPSRTQRIMESISVSNEVGG 59
Query: 58 AGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCG 117
AGGAYSYDALKRLDQIWS+ICS Q QE QQVVSS + S+ DL+D+ FDV+VCG
Sbjct: 60 AGGAYSYDALKRLDQIWSSICS-QAATQEPQQVVSSIPYVPSRLDLTDE--DRFDVVVCG 116
Query: 118 GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT 177
GTLGIFIA AL KGLRV IVERN LKGREQEWNISRKELLELVE GIL E+DI++A A
Sbjct: 117 GTLGIFIAAALIAKGLRVGIVERNILKGREQEWNISRKELLELVEVGILSENDIEKAIAA 176
Query: 178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA 237
KFNPNRCGFE KGE+WVEDILNLGVSPAKLIEI KK FISLGGVI EGYSVSSIC YE+A
Sbjct: 177 KFNPNRCGFEDKGEVWVEDILNLGVSPAKLIEITKKHFISLGGVILEGYSVSSICVYEDA 236
Query: 238 AVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIY 297
AVL LAEGK LS+ LIIDAMGNFSPVV+QIR GRKPDGVCLVVGSCARGF+DNSTSDVIY
Sbjct: 237 AVLQLAEGKTLSTRLIIDAMGNFSPVVRQIRGGRKPDGVCLVVGSCARGFEDNSTSDVIY 296
Query: 298 SSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEY 357
SSSS+K +G+SEVQLFWEAFPAGSGP+DRTTYMFTY+ PQ GSPKLE+LLE YWDLMP+Y
Sbjct: 297 SSSSMKNIGESEVQLFWEAFPAGSGPMDRTTYMFTYVSPQPGSPKLEDLLENYWDLMPKY 356
Query: 358 QGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 417
QGV+L+NLEI RVIYGIFPTY DSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR
Sbjct: 357 QGVSLENLEIMRVIYGIFPTYCDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 416
Query: 418 LSTGVYEAVRGDFVDSYSLSLLNPYM---------------------------------- 443
LS G+YEA+ GDF+D++SLSLLNPYM
Sbjct: 417 LSAGIYEAISGDFLDAHSLSLLNPYMPNLSASWLFQRAMSAKQKSNIYPEFVNDLLHVNF 476
Query: 444 ----KLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGH 499
+LGDPVLRPFLQ DVI+ PLAKTLG+VML KPQIIP+IFKQVGIPVL+DWSGH
Sbjct: 477 QSMQRLGDPVLRPFLQ---DVIQLEPLAKTLGIVMLTKPQIIPAIFKQVGIPVLLDWSGH 533
Query: 500 FFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 549
F ML YYT LS+FADPVIR L+N P ++KYEW R+LEAWKYGSGLDYKL
Sbjct: 534 FLMLSYYTFLSSFADPVIRPLINVLPLKLKYEWKRHLEAWKYGSGLDYKL 583
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554456|ref|XP_003545562.1| PREDICTED: uncharacterized protein LOC100784275 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/588 (71%), Positives = 475/588 (80%), Gaps = 43/588 (7%)
Query: 1 MVFLQLRHFNGVSHFP-SQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG 59
M+ L+L+ NG+S +K S+R + +PQA VPSRT+RIMES+SVSGEVGGAG
Sbjct: 1 MLLLRLQPINGISQLSVGTSFPHKKCSRRPLLSRPQA-VPSRTQRIMESVSVSGEVGGAG 59
Query: 60 GAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGT 119
GAYSY+ALKRLDQ WS+ICS+Q V QE QQVVS+ LF SDL+DKA G++DV+VCGGT
Sbjct: 60 GAYSYEALKRLDQQWSSICSSQEVVQEPQQVVSTIPSLFGSSDLADKAEGSYDVLVCGGT 119
Query: 120 LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF 179
LGIFIATAL +GLRVAIVERN LKGR+QEWNIS KELLELVE G+L EDDI+ ATA KF
Sbjct: 120 LGIFIATALCARGLRVAIVERNVLKGRDQEWNISTKELLELVEVGVLEEDDIERATAVKF 179
Query: 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV 239
NPNRCGFE KG+IWV DILNLGVSPAKLIEIVK RFISLGGVIFEG VS I YE+AAV
Sbjct: 180 NPNRCGFERKGDIWVNDILNLGVSPAKLIEIVKTRFISLGGVIFEGCGVSCINVYEDAAV 239
Query: 240 LLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSS 299
L L+ KILSS LIIDAMGNFSPVVKQIR GRKPDGVCLVVG+CARGF+ NSTSDVI+SS
Sbjct: 240 LKLSGDKILSSRLIIDAMGNFSPVVKQIRGGRKPDGVCLVVGTCARGFETNSTSDVIFSS 299
Query: 300 SSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQG 359
SS+KKVGDS+ QLFWEAFPAGSGPLDRTTY+FTY++PQ SPKLEELLE YWDLMPEYQG
Sbjct: 300 SSIKKVGDSKAQLFWEAFPAGSGPLDRTTYLFTYVEPQPASPKLEELLEAYWDLMPEYQG 359
Query: 360 VTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419
V+LDNLEI RVIYGIFPTYR SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGRLS
Sbjct: 360 VSLDNLEILRVIYGIFPTYRQSPLPAAFSRVLQFGDASGIQSPVSFGGFGSLTRHLGRLS 419
Query: 420 TGVYEAVRGDFVDSYSLSLLNPYM------------------------------------ 443
G++EA+ GD++DSYSLSLLNPYM
Sbjct: 420 AGIHEAINGDYLDSYSLSLLNPYMPNLSASWLFQRAMSAKKQSNVPADFINELLYTNFSC 479
Query: 444 --KLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFF 501
+LGDPVLRPFLQ DV++FGPL+KTLGLVML P+I+PSIFKQVGIPVL+DWS HF
Sbjct: 480 MQRLGDPVLRPFLQ---DVVQFGPLSKTLGLVMLTNPKILPSIFKQVGIPVLLDWSRHFL 536
Query: 502 MLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 549
LGYYT LSTFADP++R LN P + ++W R+LEAWKYG+GLDYKL
Sbjct: 537 GLGYYTFLSTFADPIVRPFLNTLPSKTSFQWKRHLEAWKYGAGLDYKL 584
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453527|ref|XP_004144508.1| PREDICTED: uncharacterized protein LOC101203820 [Cucumis sativus] gi|449493152|ref|XP_004159207.1| PREDICTED: uncharacterized LOC101203820 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/548 (72%), Positives = 456/548 (83%), Gaps = 41/548 (7%)
Query: 40 SRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFS 99
SRT+RIME ISV+GEVGGAGGAYSY+ALKRLDQIWS ICS Q + + Q+VV +G FS
Sbjct: 47 SRTQRIMEGISVTGEVGGAGGAYSYNALKRLDQIWSRICSDQEIPEAAQEVVRRVSGAFS 106
Query: 100 QSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLE 159
+SDL +KA+ TFDV+VCGGTLG+FIATALS KGLR+ IVERN LKGREQEWNISRKELLE
Sbjct: 107 RSDLEEKAIDTFDVLVCGGTLGVFIATALSLKGLRIGIVERNVLKGREQEWNISRKELLE 166
Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
LVE G++ ED+I++ATA KFNPNRC FEGKGEIWVE+ILNLGVSP KLIE+VKKRFISLG
Sbjct: 167 LVEVGVITEDEIEQATAMKFNPNRCAFEGKGEIWVENILNLGVSPEKLIELVKKRFISLG 226
Query: 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLV 279
GVIFEG +VSSIC Y++ V+ L++G ILSS L IDAMGNFSPVVKQIR GRKPDGVCLV
Sbjct: 227 GVIFEGCNVSSICIYDDTTVMQLSDGNILSSQLTIDAMGNFSPVVKQIRRGRKPDGVCLV 286
Query: 280 VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAG 339
VGSCARGF+DNSTSDVIYSSSS++KVG SEVQLFWEAFPAGSGP+DRTTYMFTYIDPQ G
Sbjct: 287 VGSCARGFRDNSTSDVIYSSSSLRKVGSSEVQLFWEAFPAGSGPVDRTTYMFTYIDPQPG 346
Query: 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399
SPKLEELLE YWDLMP+YQGV+LD+L+I R+IYG+FPTYR+SPLPAAF+R+LQFGDASGI
Sbjct: 347 SPKLEELLEEYWDLMPKYQGVSLDDLKILRIIYGVFPTYRNSPLPAAFDRVLQFGDASGI 406
Query: 400 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM---------------- 443
QSPVSFGGFGSLTRHLGRLSTG+YEAV +F+DS SLSLLNPYM
Sbjct: 407 QSPVSFGGFGSLTRHLGRLSTGIYEAVTENFLDSNSLSLLNPYMPNLSSSWLFQRAMSAK 466
Query: 444 ----------------------KLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQII 481
+LGDPVLRPFLQ DV++F PL +TLGLVML KPQ++
Sbjct: 467 QRSNISPYFINELLHVNFQSMQRLGDPVLRPFLQ---DVVQFVPLTQTLGLVMLTKPQLL 523
Query: 482 PSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKY 541
PSIFKQVGIPVL+DW GHF MLGYYT LSTF DP++RS L++ P+ +EW R LEAWKY
Sbjct: 524 PSIFKQVGIPVLLDWFGHFGMLGYYTFLSTFVDPIVRSFLSSLTPKETFEWKRRLEAWKY 583
Query: 542 GSGLDYKL 549
G+GLDYKL
Sbjct: 584 GAGLDYKL 591
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|164564753|dbj|BAF98233.1| CM0545.530.nc [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/531 (71%), Positives = 431/531 (81%), Gaps = 53/531 (9%)
Query: 1 MVFLQLRHFNGVSH------FPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGE 54
M+ LQL+ FNGVSH FP ++K S+R + L+PQA VPSRT+RIMES+SVSGE
Sbjct: 1 MLLLQLQPFNGVSHLTVGTPFP-----QKKCSRRTLLLRPQA-VPSRTQRIMESVSVSGE 54
Query: 55 VGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVI 114
VGGAGGAYSY+ALKRLDQ+WS++CS Q V QE QQVVSS LF SDL++KA G++DV+
Sbjct: 55 VGGAGGAYSYEALKRLDQLWSSLCSAQEVVQEPQQVVSSIPSLFRSSDLANKAEGSYDVV 114
Query: 115 VCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEA 174
VCGGTLGIFIATAL +GL+VAIVERN LKGREQ+WNISRKELLELVE G+L EDDI+ A
Sbjct: 115 VCGGTLGIFIATALCARGLKVAIVERNVLKGREQDWNISRKELLELVEVGVLEEDDIERA 174
Query: 175 TATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY 234
T+ FNPNRCGFE KG+IWV +IL+LGVSP KLIEIVK+RFISLGGVIFEG SVS I Y
Sbjct: 175 TSINFNPNRCGFESKGDIWVNNILHLGVSPVKLIEIVKERFISLGGVIFEGCSVSCINIY 234
Query: 235 ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSD 294
E+AAVL L+ KILSS LIIDAMGNFSP+VKQIR GRKPDGVCLVVG+CARGF+ NSTSD
Sbjct: 235 EDAAVLKLSGDKILSSRLIIDAMGNFSPIVKQIRRGRKPDGVCLVVGTCARGFESNSTSD 294
Query: 295 VIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLM 354
VI+SSSSVKKVGDS+ Q FWEAFPA SGPLDRTTYMFTY++ Q GSPKLEELLE YWDLM
Sbjct: 295 VIFSSSSVKKVGDSQAQYFWEAFPAASGPLDRTTYMFTYVEAQPGSPKLEELLEAYWDLM 354
Query: 355 PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRH 414
PEYQGV+LDNLEI RVIYGIFPTYR+SPLPAAF R+LQFGDASGIQSPVSFGGFGSLTRH
Sbjct: 355 PEYQGVSLDNLEILRVIYGIFPTYRESPLPAAFCRVLQFGDASGIQSPVSFGGFGSLTRH 414
Query: 415 LGRLSTGVYEAVRGDFVDSYSLSLLNPYM------------------------------- 443
LGR+S G+YEA+ GD++DSY+LSLLNPYM
Sbjct: 415 LGRISAGIYEAINGDYLDSYNLSLLNPYMPNLSASWLFQRAMSAKKQSNVPPDFINELLF 474
Query: 444 -------KLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 487
+LGDPVLRPFLQ DV++FGPL+KTLGLVML KPQI+PSIFKQ
Sbjct: 475 ANFSCMQRLGDPVLRPFLQ---DVVQFGPLSKTLGLVMLTKPQILPSIFKQ 522
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42569568|ref|NP_180823.3| Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana] gi|110742020|dbj|BAE98947.1| hypothetical protein [Arabidopsis thaliana] gi|330253614|gb|AEC08708.1| Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/589 (65%), Positives = 453/589 (76%), Gaps = 44/589 (7%)
Query: 1 MVFLQLRHFNGV--SHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGA 58
MV LQ+ FNG S +Q + R+ + +C+Q Q A PS T++IMESISV GE GGA
Sbjct: 1 MVVLQIHQFNGFVSSVSRAQTNQGRRRASTTVCVQTQLA-PSLTQKIMESISVGGEAGGA 59
Query: 59 GGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGG 118
GGAYSY+ALKRLD IWSNIC+ T QE QQ+VS +G + + VGTFD++VCGG
Sbjct: 60 GGAYSYNALKRLDNIWSNICTQPTGPQETQQIVSRVSGFSQDYSMGNNLVGTFDIVVCGG 119
Query: 119 TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATK 178
TLGIF+ATAL KGLRVA+VERN +KGR+QEWNISRKE+ EL E +L ED+I+E A K
Sbjct: 120 TLGIFLATALCAKGLRVAVVERNAIKGRDQEWNISRKEMKELTEVRVLTEDEIEEVIAAK 179
Query: 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA 238
FNPNRCGFE G+IWVEDILNLGVSPAKL+E VK+RFISLGGVI E S+SSI Y + A
Sbjct: 180 FNPNRCGFENLGDIWVEDILNLGVSPAKLVETVKQRFISLGGVILEDSSLSSIVIYNDLA 239
Query: 239 VLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYS 298
V+ L++G LSS L+IDAMGNFSP++KQI+ GRKPDG+CLVVGSCA GFK+NS+SDVIYS
Sbjct: 240 VMQLSKGDTLSSRLVIDAMGNFSPILKQIKRGRKPDGMCLVVGSCAHGFKENSSSDVIYS 299
Query: 299 SSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQ 358
SSSV +V DS VQLFWEAFPAGSGPLDRTTYMFTY +PQ+ SP LE+LLE YW LMP+YQ
Sbjct: 300 SSSVTRVADSNVQLFWEAFPAGSGPLDRTTYMFTYTEPQSTSPSLEDLLEEYWKLMPKYQ 359
Query: 359 GVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL 418
GV+LD LEI RV+YGIFPTYR+SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGRL
Sbjct: 360 GVSLDELEILRVVYGIFPTYRNSPLPAAFDRVLQFGDASGIQSPVSFGGFGSLTRHLGRL 419
Query: 419 STGVYEAVRGDFVDSYSLSLLNPYM----------------------------------- 443
S G+Y+A+ GD +DS SLS LNPYM
Sbjct: 420 SNGIYDAIDGDLLDSDSLSKLNPYMPNLSASWLFQRAMSAKQQLDVSRGFTNELLHVNFS 479
Query: 444 ---KLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHF 500
+LGDPVLRPFLQ D+I+FGPLAKTLGLVML KPQIIPSIF+QVGIPVL+DWS HF
Sbjct: 480 CMQRLGDPVLRPFLQ---DIIQFGPLAKTLGLVMLTKPQIIPSIFRQVGIPVLLDWSVHF 536
Query: 501 FMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 549
FMLG YTLLS + DP++R L P + ++EW R LEAWKYG+GLDY+L
Sbjct: 537 FMLGLYTLLSAYIDPLLRPSLEGLPSKTRFEWKRCLEAWKYGAGLDYEL 585
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357141364|ref|XP_003572198.1| PREDICTED: uncharacterized protein LOC100825935 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/584 (64%), Positives = 444/584 (76%), Gaps = 53/584 (9%)
Query: 13 SHFPSQVHGKRKVSQRCICL----------QPQAAVPSRTRRIMESISVSGEVGGAGGAY 62
+ P HG R V+ R C + A PSRT+ IM+ IS EVGGAGGAY
Sbjct: 12 AQLPWARHGGRLVAPRAGCGRRIVRVRASGEAGARPPSRTQMIMDKISGGDEVGGAGGAY 71
Query: 63 SYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGI 122
SY ALKRLDQI S+IC +Q V ++ ++V+ G DL + FDV+VCGGTLGI
Sbjct: 72 SYGALKRLDQICSSICQSQ-VDPKVPEIVTQVQGPSVDYDLGGGS-EIFDVLVCGGTLGI 129
Query: 123 FIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN 182
F+ATALSFKGLRV I+ERN +KGREQEWNISRKEL+E+VE GIL E ++++ ++ FNPN
Sbjct: 130 FVATALSFKGLRVGIIERNIIKGREQEWNISRKELMEIVEVGILSEGEVEQIISSDFNPN 189
Query: 183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL 242
RCGFE KGEIWVE ILNLG+SPAKL+EI+K+RFIS GG IFEG S+SSI +++ AVL L
Sbjct: 190 RCGFENKGEIWVEGILNLGISPAKLVEIMKERFISSGGAIFEGKSLSSISVHDDLAVLKL 249
Query: 243 AEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSV 302
++G L L++DAMGNFSP+V+QIRSGRKPDG+CLVVG+CARGF+ N+TSDVI+SSSSV
Sbjct: 250 SDGDCLPCRLVVDAMGNFSPIVRQIRSGRKPDGLCLVVGACARGFERNTTSDVIFSSSSV 309
Query: 303 KKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTL 362
KK G+S VQLFWEAFPAGSGP DRTTYMFTY+DPQ G PKLEELLE YWDLMPEYQ VTL
Sbjct: 310 KKAGNSGVQLFWEAFPAGSGPADRTTYMFTYVDPQFGFPKLEELLEIYWDLMPEYQDVTL 369
Query: 363 DNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 422
+ L+I+RVI+GIFPT+RDSPLPAAF+RILQ GDASGIQSPVSFGGFGSLTRHLGRLS G+
Sbjct: 370 ETLDIRRVIFGIFPTHRDSPLPAAFDRILQVGDASGIQSPVSFGGFGSLTRHLGRLSNGI 429
Query: 423 YEAVRGDFVDSYSLSLLNPYM--------------------------------------K 444
YEAV GDF+D+YSL LLNPYM K
Sbjct: 430 YEAVSGDFLDAYSLRLLNPYMPNLSASWLFQRAMSTRPQTNVSPTFINELLYANFQSMQK 489
Query: 445 LGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLG 504
LGD VLRPFLQ DVI+FGPL KTLGLVML++PQI+PSIFKQVG+ V+++WSGHF MLG
Sbjct: 490 LGDSVLRPFLQ---DVIQFGPLVKTLGLVMLSRPQILPSIFKQVGLGVILNWSGHFVMLG 546
Query: 505 YYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYK 548
YYT LS F DPV+R + + PPR KY+W RYLEAWKYG+GLDY+
Sbjct: 547 YYTFLSNFIDPVVRPWVESLPPRNKYQWKRYLEAWKYGAGLDYR 590
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|308044513|ref|NP_001183889.1| uncharacterized protein LOC100502482 [Zea mays] gi|238015286|gb|ACR38678.1| unknown [Zea mays] gi|413922261|gb|AFW62193.1| hypothetical protein ZEAMMB73_528743 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/547 (65%), Positives = 429/547 (78%), Gaps = 43/547 (7%)
Query: 40 SRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFS 99
SRT+ IM+ IS VGGAGGAYSY ALKRLDQIWS+IC Q ++ +VV+ GL +
Sbjct: 49 SRTQMIMDKISAGEGVGGAGGAYSYSALKRLDQIWSSICEAQA-DSKVPEVVTRVEGLLA 107
Query: 100 QSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLE 159
SDL + FDVIVCGGTLGIF+ATALS KGLR+ I+ERN +KGREQEWNISRKEL+E
Sbjct: 108 DSDLGSGS-EIFDVIVCGGTLGIFVATALSSKGLRIGIIERNIIKGREQEWNISRKELME 166
Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
+VE GIL E ++++ ++ FNPNRCGFE KGEIWVE+ILNLGVSPAKL+E +K+RFIS G
Sbjct: 167 IVEIGILSEAELEQIISSDFNPNRCGFEDKGEIWVENILNLGVSPAKLVENMKERFISSG 226
Query: 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLV 279
G IFE S+SSI Y++ AVL L++G LS L++DAMGNFSP+V+QIRSGRKPDG+CLV
Sbjct: 227 GAIFEEKSLSSIYVYDDLAVLKLSDGDSLSCRLVVDAMGNFSPIVRQIRSGRKPDGMCLV 286
Query: 280 VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAG 339
VG+CA GF+ N+TSD+I+SSSSVK+ G+S VQLFWEAFPAGSGP DRTTYMFTY+DP G
Sbjct: 287 VGACAHGFEKNTTSDIIFSSSSVKRAGNSGVQLFWEAFPAGSGPNDRTTYMFTYVDPTFG 346
Query: 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399
PKLEELLE +WDLMP YQ V L NL+I+RVI+GIFPTYRDSPLPAAF+RILQ GDASGI
Sbjct: 347 GPKLEELLEVFWDLMPAYQDVLLQNLDIRRVIFGIFPTYRDSPLPAAFDRILQVGDASGI 406
Query: 400 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM---------------- 443
QSPVSFGGFGSLTRHLGRLS+G+ EAV GDF+D++SL LLNPYM
Sbjct: 407 QSPVSFGGFGSLTRHLGRLSSGICEAVEGDFLDAHSLQLLNPYMPNLSASWLFQRAMSVR 466
Query: 444 ----------------------KLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQII 481
KLGD VLRPFLQ DVI+FGPL KTLGLVM+ +PQI+
Sbjct: 467 PHVNVSPTFINELLFANFQSMQKLGDSVLRPFLQ---DVIQFGPLVKTLGLVMITRPQIL 523
Query: 482 PSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKY 541
PSIFKQVG+ V+++WSGHF MLGYYT LST+ DP++RS + + PPR KY+W RYLEAW+Y
Sbjct: 524 PSIFKQVGLGVILEWSGHFMMLGYYTFLSTYIDPILRSWVESLPPRDKYQWKRYLEAWRY 583
Query: 542 GSGLDYK 548
G+GLDY+
Sbjct: 584 GAGLDYR 590
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326507200|dbj|BAJ95677.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/554 (64%), Positives = 426/554 (76%), Gaps = 50/554 (9%)
Query: 39 PSRTRRIMESISVSG-EVGGAGGAYSYDALKRLDQIWSNICST---QTVQQEIQQVVSSN 94
PSRT+ IM+ IS +G EVGGAGGAYSYDALKRLDQI S+ICS + + Q+V+
Sbjct: 59 PSRTQTIMDKISSAGDEVGGAGGAYSYDALKRLDQICSSICSAPQEASSSKAPPQIVTRV 118
Query: 95 AGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISR 154
G + +D TFDV+VCGGTLGIFIATALS++GLRV IVERN +KGREQEWNISR
Sbjct: 119 QGPARAA--ADLGAETFDVLVCGGTLGIFIATALSYRGLRVGIVERNAVKGREQEWNISR 176
Query: 155 KELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKR 214
KEL+E+V+ GIL E + ++ + FNPNRCGFEGKGEIWVEDIL+LG+SPAKL+EI+K R
Sbjct: 177 KELMEIVQVGILSEAEAEQVVTSDFNPNRCGFEGKGEIWVEDILHLGISPAKLVEIMKAR 236
Query: 215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPD 274
FIS GG IFEG SVSSI +++ AVL L++G L L++DAMGNFSP+V+QIRSGR+PD
Sbjct: 237 FISSGGEIFEGKSVSSISVHDDLAVLKLSDGDRLRCRLVVDAMGNFSPIVRQIRSGRRPD 296
Query: 275 GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSE---VQLFWEAFPAGSGPLDRTTYMF 331
G+CLVVG+CARGF+ N+TSDVI+SSSSVK VG VQLFWEAFPAGSGP DRTTYMF
Sbjct: 297 GLCLVVGACARGFEKNTTSDVIFSSSSVKSVGGDSGRGVQLFWEAFPAGSGPTDRTTYMF 356
Query: 332 TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRIL 391
TY+DPQ GSPKLEELLE +WDLMP YQ L+NL+I+RVIYGIFPTYRDSPLPAAF+RIL
Sbjct: 357 TYVDPQFGSPKLEELLEMFWDLMPGYQDTVLENLDIRRVIYGIFPTYRDSPLPAAFDRIL 416
Query: 392 QFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM-------- 443
Q GDASGIQSPVSFGGFGSLTRHLGRLS GVYEAV GDF+D+ SL LLNPYM
Sbjct: 417 QVGDASGIQSPVSFGGFGSLTRHLGRLSNGVYEAVSGDFLDAQSLKLLNPYMPNLSASWL 476
Query: 444 ------------------------------KLGDPVLRPFLQVLLDVIKFGPLAKTLGLV 473
KLGD VLRPFLQ DVI+FGPL KTLGLV
Sbjct: 477 FQRAMSTRPGSDISPTFINELLFANFQSMQKLGDSVLRPFLQ---DVIQFGPLVKTLGLV 533
Query: 474 MLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWN 533
M+++PQI+P IFKQVG+ V+++WSGHF MLGYYT LS+F P + + + PR +Y+W+
Sbjct: 534 MISRPQILPEIFKQVGVGVILNWSGHFVMLGYYTFLSSFVGPAVTPWVKSLAPRDRYQWD 593
Query: 534 RYLEAWKYGSGLDY 547
RYLEAW+YG+GLDY
Sbjct: 594 RYLEAWEYGAGLDY 607
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115476458|ref|NP_001061825.1| Os08g0422000 [Oryza sativa Japonica Group] gi|37573089|dbj|BAC98659.1| Glycine/D-amino acid oxidases-like [Oryza sativa Japonica Group] gi|113623794|dbj|BAF23739.1| Os08g0422000 [Oryza sativa Japonica Group] gi|215695103|dbj|BAG90294.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640571|gb|EEE68703.1| hypothetical protein OsJ_27354 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/549 (64%), Positives = 426/549 (77%), Gaps = 43/549 (7%)
Query: 38 VPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGL 97
PSRT+ IM+ IS EVGGAGGAYSY+ALKRLDQIWS+IC Q+ ++ +VV+ G
Sbjct: 68 APSRTQMIMDKISSGEEVGGAGGAYSYNALKRLDQIWSSICEAQS-DSKVPEVVTRVQGP 126
Query: 98 FSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKEL 157
DL D + FDV+VCGGTLGIF+ATALS+KGLRV I+ERN +KGREQEWNISRKEL
Sbjct: 127 LVDYDLGDGSE-IFDVLVCGGTLGIFVATALSYKGLRVGIIERNIIKGREQEWNISRKEL 185
Query: 158 LELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS 217
+ELVE GIL E++I++ ++ FNP RC FE KGEIWVE+ILNLG+SPAKL+EI+K+RF+S
Sbjct: 186 MELVEVGILSEEEIEQIISSDFNPTRCAFESKGEIWVENILNLGISPAKLVEIMKERFVS 245
Query: 218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC 277
GG IFEG S+SSI +++ AVL L++G L L+IDAMGNFSP+V+QIRSGRKPDGVC
Sbjct: 246 SGGAIFEGKSLSSISVHDDFAVLNLSDGGSLPCRLVIDAMGNFSPIVRQIRSGRKPDGVC 305
Query: 278 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 337
LVVG+CARGF N+TSD+I+SSSS+K+ G+S VQLFWE FPAGSGP DRTTYMFTY+DP
Sbjct: 306 LVVGTCARGFDRNTTSDIIFSSSSIKRAGNSGVQLFWEGFPAGSGPTDRTTYMFTYVDPH 365
Query: 338 AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDAS 397
+G PKLEELLE +WDLMP Y+ V L+NL+I RVI+GIFPTYR+SPLPAAF+R+LQ GDAS
Sbjct: 366 SGGPKLEELLETFWDLMPAYEDVVLENLDIMRVIFGIFPTYRNSPLPAAFDRVLQVGDAS 425
Query: 398 GIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM-------------- 443
GIQSPVSFGGFGSLTRHLGRLS G+YEAV GD +D+ SL LLNPYM
Sbjct: 426 GIQSPVSFGGFGSLTRHLGRLSNGIYEAVSGDLLDARSLQLLNPYMPNLSASWLFQRAMS 485
Query: 444 ------------------------KLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQ 479
KLGD VLRPFLQ DVI+FGPL KTLGLVM+ +PQ
Sbjct: 486 ARPQIDVSPTFINELLFANFESMQKLGDSVLRPFLQ---DVIQFGPLVKTLGLVMITRPQ 542
Query: 480 IIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAW 539
I+PSIFKQ G V+++WSGHF MLGYYT LSTF DP++R + + P R KY+W RYLEAW
Sbjct: 543 ILPSIFKQAGPGVILNWSGHFVMLGYYTFLSTFIDPILRPWVESLPLRNKYQWKRYLEAW 602
Query: 540 KYGSGLDYK 548
KYG+GLDY+
Sbjct: 603 KYGAGLDYR 611
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Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| TAIR|locus:2046422 | 585 | AT2G32640 [Arabidopsis thalian | 0.803 | 0.753 | 0.639 | 5e-190 |
| TAIR|locus:2046422 AT2G32640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1454 (516.9 bits), Expect = 5.0e-190, Sum P(2) = 5.0e-190
Identities = 285/446 (63%), Positives = 336/446 (75%)
Query: 1 MVFLQLRHFNG-VSHFP-SQVHGKRKVSQRCICLQPQAAVPSRTRRIMXXXXXXXXXXXX 58
MV LQ+ FNG VS +Q + R+ + +C+Q Q A PS T++IM
Sbjct: 1 MVVLQIHQFNGFVSSVSRAQTNQGRRRASTTVCVQTQLA-PSLTQKIMESISVGGEAGGA 59
Query: 59 XXXXXXDALKRLDQIWSNICXXXXXXXXXXXXXXXNAGLFSQS-DLSDKAVGTFDVIVCG 117
+ALKRLD IWSNIC +G FSQ + + VGTFD++VCG
Sbjct: 60 GGAYSYNALKRLDNIWSNICTQPTGPQETQQIVSRVSG-FSQDYSMGNNLVGTFDIVVCG 118
Query: 118 GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT 177
GTLGIF+ATAL KGLRVA+VERN +KGR+QEWNISRKE+ EL E +L ED+I+E A
Sbjct: 119 GTLGIFLATALCAKGLRVAVVERNAIKGRDQEWNISRKEMKELTEVRVLTEDEIEEVIAA 178
Query: 178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA 237
KFNPNRCGFE G+IWVEDILNLGVSPAKL+E VK+RFISLGGVI E S+SSI Y +
Sbjct: 179 KFNPNRCGFENLGDIWVEDILNLGVSPAKLVETVKQRFISLGGVILEDSSLSSIVIYNDL 238
Query: 238 AVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIY 297
AV+ L++G LSS L+IDAMGNFSP++KQI+ GRKPDG+CLVVGSCA GFK+NS+SDVIY
Sbjct: 239 AVMQLSKGDTLSSRLVIDAMGNFSPILKQIKRGRKPDGMCLVVGSCAHGFKENSSSDVIY 298
Query: 298 XXXXXXXXGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEY 357
DS VQLFWEAFPAGSGPLDRTTYMFTY +PQ+ SP LE+LLE YW LMP+Y
Sbjct: 299 SSSSVTRVADSNVQLFWEAFPAGSGPLDRTTYMFTYTEPQSTSPSLEDLLEEYWKLMPKY 358
Query: 358 QGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 417
QGV+LD LEI RV+YGIFPTYR+SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGR
Sbjct: 359 QGVSLDELEILRVVYGIFPTYRNSPLPAAFDRVLQFGDASGIQSPVSFGGFGSLTRHLGR 418
Query: 418 LSTGVYEAVRGDFVDSYSLSLLNPYM 443
LS G+Y+A+ GD +DS SLS LNPYM
Sbjct: 419 LSNGIYDAIDGDLLDSDSLSKLNPYM 444
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00025926001 | SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (583 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00025310001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (504 aa) | • | • | • | 0.927 | |||||
 | GSVIVG00016526001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (529 aa) | • | • | • | 0.919 | |||||
 | GSVIVG00031131001 | SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (583 aa) | • | • | 0.903 | ||||||
 | GSVIVG00027139001 | SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (569 aa) | • | • | 0.900 | ||||||
 | GSVIVG00037718001 | SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (306 aa) | • | 0.899 | |||||||
 | bch1 | SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (299 aa) | • | 0.899 | |||||||
 | GSVIVG00038227001 | SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (216 aa) | • | • | 0.525 | ||||||
 | GSVIVG00006111001 | SubName- Full=Chromosome chr14 scaffold_164, whole genome shotgun sequence; (332 aa) | • | • | 0.523 | ||||||
 | GSVIVG00022014001 | SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (291 aa) | • | • | 0.519 | ||||||
 | GSVIVG00022834001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa) | • | • | 0.506 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 549 | |||
| TIGR02032 | 295 | TIGR02032, GG-red-SF, geranylgeranyl reductase fam | 3e-04 | |
| COG0644 | 396 | COG0644, FixC, Dehydrogenases (flavoproteins) [Ene | 4e-04 |
| >gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 67/301 (22%), Positives = 120/301 (39%), Gaps = 25/301 (8%)
Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN--ISRKELLELVESGILV 167
+DV+V G G G A L+ KGLRV ++E+ + R + +S + L EL G L+
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF-PRYKPCGGALSPRALEELDLPGELI 59
Query: 168 EDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYS 227
+ + A F+PN EI +E L + E + +R G + G
Sbjct: 60 VNLVR--GARFFSPN----GDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTR 113
Query: 228 VSSICTYENAAVLLLAEGKI-LSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG 286
V + +++ V+++ + +++ ++I A G+ S V K++ ++P G AR
Sbjct: 114 VLDVEIHDDRVVVIVRGSEGTVTAKIVIGADGSRSIVAKKLGLKKEPR----EYGVAARA 169
Query: 287 FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEEL 346
+ +V V + FP G G + + + PK +
Sbjct: 170 EVEMPDEEVDEDFVEVYIDRGIVPGGYGWVFPKGDGTA--NVGVGSRSAEEGEDPK--KY 225
Query: 347 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406
L+ + PE L + E V + P +L GDA+G +P++
Sbjct: 226 LKDFLARRPE-----LKDAETVEVCGALIPI-GRPDEKLVRGNVLLVGDAAGHVNPLTGE 279
Query: 407 G 407
G
Sbjct: 280 G 280
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This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295 |
| >gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 66/305 (21%), Positives = 113/305 (37%), Gaps = 26/305 (8%)
Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGIL-- 166
+DV++ G G G A L+ GL V ++E+ + G ++ + L
Sbjct: 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG-------AKPCCGGGLSPRALEE 55
Query: 167 VEDDIDEATATKFNPNRCGFEG-KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEG 225
+ D DE K R F G K I V V AK + + +R G ++ G
Sbjct: 56 LIPDFDEEIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPG 115
Query: 226 YSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPVVKQI-RSGRKPDGVCLVVGSC 283
V+ + ++ V+ + G + + ++IDA G S + +++ RKP+ + V
Sbjct: 116 TRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEV 175
Query: 284 ARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPL-DRTTYMFTYIDPQAGSPK 342
D + +Y V G + FP G G +
Sbjct: 176 IEVPDDGDVEEFLYGPLDVGPGG------YGWIFPLGDGHANVGIGVLLDDPSL----SP 225
Query: 343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402
ELLER+ + L +I G P + P + +L GDA+G +P
Sbjct: 226 FLELLERFKE--HPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNP 283
Query: 403 VSFGG 407
++ G
Sbjct: 284 LTGEG 288
|
Length = 396 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 100.0 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 100.0 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 100.0 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 100.0 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 100.0 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 100.0 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 100.0 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 100.0 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 100.0 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 100.0 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 100.0 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 99.98 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 99.98 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.97 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 99.97 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 99.97 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 99.97 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 99.97 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 99.97 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 99.97 | |
| PLN02463 | 447 | lycopene beta cyclase | 99.97 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 99.97 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 99.96 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 99.96 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 99.96 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 99.96 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 99.96 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 99.96 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 99.96 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 99.96 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 99.96 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.96 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 99.96 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 99.96 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 99.96 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 99.95 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 99.95 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 99.95 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 99.95 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 99.95 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 99.95 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 99.95 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 99.95 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 99.94 | |
| PLN02985 | 514 | squalene monooxygenase | 99.94 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 99.94 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 99.94 | |
| PRK05868 | 372 | hypothetical protein; Validated | 99.94 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 99.94 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 99.93 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 99.93 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 99.93 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 99.92 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 99.9 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 99.9 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 99.9 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 99.87 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 99.85 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 99.83 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 99.78 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 99.77 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 99.38 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 99.34 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 99.28 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 99.26 | |
| PF08491 | 276 | SE: Squalene epoxidase; InterPro: IPR013698 This d | 99.25 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 99.24 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 99.24 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 99.24 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.21 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 99.18 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 99.09 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 99.07 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 99.04 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 99.03 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.02 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 99.0 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 99.0 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.96 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.95 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.93 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.91 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.89 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.87 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.86 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.86 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.85 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.84 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.84 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.82 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.8 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 98.78 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.76 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.74 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.72 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.69 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.68 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.66 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.63 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 98.62 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.62 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.59 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.58 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 98.54 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.54 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.54 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.52 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.52 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.52 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.51 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.51 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.5 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.49 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.46 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.46 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 98.44 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.44 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.43 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.42 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.42 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 98.42 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.41 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.36 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 98.35 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.34 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.33 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.32 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.32 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.32 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.3 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.29 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 98.28 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.28 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.25 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 98.24 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.23 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 98.23 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.23 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.22 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.2 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.19 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 98.19 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.18 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.17 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.15 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.12 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 98.11 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.1 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.1 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 98.1 | |
| PLN02612 | 567 | phytoene desaturase | 98.09 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.09 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.09 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 98.09 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.09 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.09 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.08 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 98.06 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.05 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.05 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.05 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.04 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.04 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 98.04 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.02 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.01 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 98.0 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 98.0 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.99 | |
| PRK06370 | 463 | mercuric reductase; Validated | 97.98 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 97.97 | |
| PLN02507 | 499 | glutathione reductase | 97.94 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 97.93 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 97.93 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 97.92 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 97.91 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 97.9 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 97.89 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.89 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 97.89 | |
| PLN02546 | 558 | glutathione reductase | 97.88 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 97.87 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 97.85 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 97.85 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.85 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.83 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.83 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.82 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 97.81 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.78 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.76 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.76 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.75 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.73 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 97.73 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 97.7 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.69 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.68 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 97.65 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.62 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 97.6 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.6 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 97.59 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 97.59 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 97.58 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 97.56 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 97.54 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.54 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.51 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.48 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.47 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 97.45 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.41 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.41 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.4 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.39 | |
| TIGR02352 | 337 | thiamin_ThiO glycine oxidase ThiO. This family con | 97.33 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 97.33 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 97.31 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 97.31 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 97.29 | |
| PRK06116 | 450 | glutathione reductase; Validated | 97.27 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 97.27 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 97.18 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.17 | |
| TIGR03197 | 381 | MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri | 97.16 | |
| PLN02507 | 499 | glutathione reductase | 97.14 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 97.13 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.12 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.09 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 97.09 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 97.09 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.08 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.07 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 97.06 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 97.05 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 97.03 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 97.01 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 97.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 97.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 96.98 | |
| PRK06370 | 463 | mercuric reductase; Validated | 96.98 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 96.97 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 96.95 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 96.93 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 96.92 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 96.89 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 96.89 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 96.89 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 96.88 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 96.87 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 96.86 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 96.85 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 96.85 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 96.82 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 96.79 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 96.76 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 96.75 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 96.72 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 96.71 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 96.71 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 96.71 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 96.69 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 96.67 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 96.66 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 96.66 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 96.65 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 96.64 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 96.63 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 96.63 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 96.63 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 96.62 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 96.56 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 96.56 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 96.55 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 96.51 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 96.51 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 96.5 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 96.46 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 96.46 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 96.4 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 96.33 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 96.32 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 96.27 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.26 | |
| PLN02785 | 587 | Protein HOTHEAD | 96.25 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 96.24 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 96.24 | |
| PLN02268 | 435 | probable polyamine oxidase | 96.21 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 96.13 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 96.12 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 96.07 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 96.07 | |
| PLN02676 | 487 | polyamine oxidase | 96.02 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 96.01 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 95.97 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 95.96 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 95.95 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 95.91 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 95.89 | |
| PF00996 | 438 | GDI: GDP dissociation inhibitor; InterPro: IPR0182 | 95.88 | |
| TIGR03377 | 516 | glycerol3P_GlpA glycerol-3-phosphate dehydrogenase | 95.77 | |
| PLN02546 | 558 | glutathione reductase | 95.75 | |
| PLN02568 | 539 | polyamine oxidase | 95.67 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 95.61 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 95.61 | |
| PRK05675 | 570 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.59 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 95.58 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 95.45 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 95.44 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 95.36 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 95.33 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 95.32 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 95.31 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 95.29 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 95.28 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 95.26 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 95.16 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 95.16 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 95.14 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 95.04 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 94.97 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 94.83 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 94.83 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 94.83 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 94.76 | |
| PLN02487 | 569 | zeta-carotene desaturase | 94.75 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 94.68 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 94.67 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 94.58 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 94.46 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 94.39 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 94.16 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 94.04 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 94.01 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 94.0 | |
| PLN02976 | 1713 | amine oxidase | 93.99 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 93.88 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 93.69 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 93.65 | |
| PLN03000 | 881 | amine oxidase | 93.55 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 93.39 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 93.25 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 92.95 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 92.54 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 92.5 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 92.37 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 92.37 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 92.22 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 92.03 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 91.59 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 91.59 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 91.56 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 91.51 | |
| KOG4405 | 547 | consensus GDP dissociation inhibitor [Signal trans | 91.42 | |
| COG5044 | 434 | MRS6 RAB proteins geranylgeranyltransferase compon | 91.33 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 91.11 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 90.89 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 90.7 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 90.63 | |
| KOG1439 | 440 | consensus RAB proteins geranylgeranyltransferase c | 90.18 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 90.16 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 89.42 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 89.14 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 89.12 | |
| PRK13230 | 279 | nitrogenase reductase-like protein; Reviewed | 88.33 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 88.17 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 88.09 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 87.86 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.79 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 87.75 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 87.74 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 87.52 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 87.44 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 87.44 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 87.01 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 86.99 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 86.51 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 86.49 | |
| PF01593 | 450 | Amino_oxidase: Flavin containing amine oxidoreduct | 86.4 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 86.35 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 86.25 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 86.09 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.84 | |
| TIGR03467 | 419 | HpnE squalene-associated FAD-dependent desaturase. | 85.77 | |
| PLN02676 | 487 | polyamine oxidase | 85.75 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 85.67 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 85.33 | |
| TIGR01287 | 275 | nifH nitrogenase iron protein. This model describe | 85.28 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 85.23 | |
| PRK13235 | 274 | nifH nitrogenase reductase; Reviewed | 84.95 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.77 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.67 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 84.65 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 84.43 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 84.15 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 84.1 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 84.09 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 83.85 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.8 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 83.62 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 83.58 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 83.58 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 83.34 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 83.23 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 82.66 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 82.62 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.38 | |
| PRK13236 | 296 | nitrogenase reductase; Reviewed | 82.12 | |
| PRK13234 | 295 | nifH nitrogenase reductase; Reviewed | 82.07 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 82.04 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 81.59 | |
| PRK13185 | 270 | chlL protochlorophyllide reductase iron-sulfur ATP | 81.55 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 81.01 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 80.95 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 80.86 | |
| PLN02487 | 569 | zeta-carotene desaturase | 80.83 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 80.55 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 80.47 | |
| PF01593 | 450 | Amino_oxidase: Flavin containing amine oxidoreduct | 80.23 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 80.14 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 80.01 |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=293.56 Aligned_cols=346 Identities=18% Similarity=0.209 Sum_probs=224.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC--CCCCCccccCCHHHHHHHHHcCCCCcccchhhhh---h--cc-C
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT--LKGREQEWNISRKELLELVESGILVEDDIDEATA---T--KF-N 180 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~--~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~---~--~~-~ 180 (549)
.+||+||||| +|+++|+.|+++|++|+||||.+ +....+...|++++++.|+++|+++. ++..-. . .. .
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~--i~~~~~~~~~~~~~~~ 79 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDR--LEALGVPPLHVMVVDD 79 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhh--hhhccCCceeeEEEec
Confidence 5899999976 59999999999999999999982 22334677899999999999998532 221100 0 00 1
Q ss_pred C--CcccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEc-CCcEEEcCEEEEc
Q 008915 181 P--NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDA 256 (549)
Q Consensus 181 ~--~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~-dG~~i~ArlVI~A 256 (549)
. ..+.|.. ..... ..+++.+.+..|.+.|.+++.+.+ ++++.+++|+.++.++++++++++ +|++++||+||+|
T Consensus 80 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgA 157 (387)
T COG0654 80 GGRRLLIFDA-AELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGA 157 (387)
T ss_pred CCceeEEecc-cccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEEC
Confidence 1 1233332 11121 345688999999999999999887 699999999999999999999998 8999999999999
Q ss_pred cCCChHHHHHhcCCC----CCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEE
Q 008915 257 MGNFSPVVKQIRSGR----KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (549)
Q Consensus 257 DG~~S~vrrql~~~~----~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~ 332 (549)
||.+|.+|+++++.. .+.+.+++........+.....+.+...+++ ..+|..+. ....++.
T Consensus 158 DG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~p~~~~---~~~~~~~ 222 (387)
T COG0654 158 DGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPF------------ALLPLPDN---RSSVVWS 222 (387)
T ss_pred CCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCce------------EEEecCCC---ceeEEEE
Confidence 999999999998332 2333343322211101111122222222211 13454422 2222222
Q ss_pred ccCCCC---CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchh
Q 008915 333 YIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFG 409 (549)
Q Consensus 333 ~~~~~~---~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g 409 (549)
...... ...+.++..+.+.+.+|.... +....... ....+|.....+.++..+|++|+|||||.+||++|||+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~n 299 (387)
T COG0654 223 LPPGPAEDLQGLSDEEFLRELQRRLGERDP--LGRVTLVS-SRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGAN 299 (387)
T ss_pred CChhhHHHHhcCCHHHHHHHHHHhcCcccc--cceEEEcc-ccccccccchhhhheecCcEEEEeeccccCCCccccchh
Confidence 211100 011333333444444444311 11111111 123567765566788889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhcC
Q 008915 410 SLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVG 489 (549)
Q Consensus 410 ~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~g 489 (549)
++++|+..|++.|.++...+. + ...|++|++.+....... ..+++ .+...+.+.......+++.+
T Consensus 300 lgl~Da~~La~~L~~~~~~~~-~---~~~L~~Y~~~R~~~~~~~-------~~~s~----~~~~~~~~~~~~~~~~r~~~ 364 (387)
T COG0654 300 LALEDAAALAEALAAAPRPGA-D---AAALAAYEARRRPRAEAI-------QKLSR----ALGRLFSADGPFARFLRNLG 364 (387)
T ss_pred hhhhhHHHHHHHHHHHhhcCc-c---HHHHHHHHHhhhhHHHHH-------HHHHH----HHhhhhccCCcHHHHHHHHH
Confidence 999999999999999987532 2 456789996554322111 12222 22457888888888988888
Q ss_pred hhh
Q 008915 490 IPV 492 (549)
Q Consensus 490 ~~~ 492 (549)
+..
T Consensus 365 l~~ 367 (387)
T COG0654 365 LRL 367 (387)
T ss_pred HHh
Confidence 774
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=293.59 Aligned_cols=354 Identities=17% Similarity=0.120 Sum_probs=222.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-------CccccCCHHHHHHHHHcCCCCcccch------hhh
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDID------EAT 175 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-------~r~~~IS~~~l~~L~~lGl~~~~eie------~~i 175 (549)
+|||+||||| +|+++|+.|+++|++|+|||+.+.+.. .+...+++.+++.|+.+|+|+..+-. .+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 6999999976 599999999999999999999864321 13346899999999999999643210 000
Q ss_pred hhccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 176 ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 176 ~~~~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
...+....+.|.. ..+.. ...++.+++..|++.|.+++.+. |++++.+++++++..+++++.|++++|++++|++||
T Consensus 85 ~~~~~~~~~~~~~-~~~~~-~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDA-AELKL-PELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecc-cccCC-CccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence 0011222233321 11111 22457799999999999998876 889999999999998888888988888899999999
Q ss_pred EccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 255 DAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
+|||.+|++|++++.+.. +.+.|.++.......+.....+.+...++ .. .+|..++ ....++
T Consensus 163 ~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~-~~p~~~~---~~~~v~ 227 (391)
T PRK08020 163 GADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGP-----------RA-FLPLFDN---WASLVW 227 (391)
T ss_pred EeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCC-----------EE-EeECCCC---cEEEEE
Confidence 999999999999876532 23334332221111111111112211111 11 2454432 222222
Q ss_pred EccCCCCC----cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 008915 332 TYIDPQAG----SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (549)
Q Consensus 332 ~~~~~~~~----~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G 407 (549)
+...... ..+.+++.+.+.+.+|.. +..+... ..+.+|.......++..+|++|+|||||.+||+.|||
T Consensus 228 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG 300 (391)
T PRK08020 228 -YDSPARIRQLQAMSMAQLQQEIAAHFPAR----LGAVTPV--AAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQG 300 (391)
T ss_pred -ECCHHHHHHHHCCCHHHHHHHHHHHhhhh----ccceEec--cccEeecceeehhhhccCcEEEEechhhccCCcccch
Confidence 1110000 012233333333333321 1122111 2245677655566788899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhh
Q 008915 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 487 (549)
Q Consensus 408 ~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~ 487 (549)
+|++++|+..|++.+.++.+.+. +......|+.|++.+..... .++.+++.. ..+|+++......+|+
T Consensus 301 ~n~al~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~R~~~~~-------~~~~~~~~l----~~~~~~~~~~~~~~R~ 368 (391)
T PRK08020 301 VNLGYRDVDALLDVLVNARSYGE-AWASEAVLKRYQRRRMADNL-------LMQSGMDLF----YAGFSNNLPPLRFARN 368 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHcCCchHHHHHHH
Confidence 99999999999999998876543 33344567899965432110 112233333 4578888888889999
Q ss_pred cChhh--hHhhHHH
Q 008915 488 VGIPV--LVDWSGH 499 (549)
Q Consensus 488 ~g~~~--~~~~~~~ 499 (549)
.|+.. .+.+++.
T Consensus 369 ~~l~~~~~~~~~k~ 382 (391)
T PRK08020 369 LGLMAAQRAGVLKR 382 (391)
T ss_pred HHHHHHhcCHHHHH
Confidence 88875 4445444
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=294.01 Aligned_cols=338 Identities=15% Similarity=0.153 Sum_probs=215.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-----CCccccCCHHHHHHHHHcCCCCcccchhhhhhccCC---
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-----REQEWNISRKELLELVESGILVEDDIDEATATKFNP--- 181 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-----~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~--- 181 (549)
+||+||||| +|+++|+.|+++|++|+|+|+.+... ..+.+.|+++++..|+++|+|+.. +.. ...+..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l--~~~-~~~~~~~~~ 78 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEEL--EKF-VAEMQDIYV 78 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHH--Hhh-cCCCcEEEE
Confidence 799999976 59999999999999999999975422 246778999999999999998642 211 111100
Q ss_pred ------CcccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 182 ------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 182 ------~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
..+.+.. .....+++.+++..|++.|.+++.+.+ ++++.+++++++..++++++|+++++ +++||+||
T Consensus 79 ~~~~g~~~~~~~~----~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvI 153 (374)
T PRK06617 79 VDNKASEILDLRN----DADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLI 153 (374)
T ss_pred EECCCceEEEecC----CCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEE
Confidence 0111211 011234688999999999999998876 68999999999999999999998766 89999999
Q ss_pred EccCCChHHHHHhcCCC--CCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEE
Q 008915 255 DAMGNFSPVVKQIRSGR--KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~--~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~ 332 (549)
+|||.+|.+|++++.+. ...+.+.+........+.+...+.+... +.+| .+|..++. ....++.
T Consensus 154 gADG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~~~~~~~~~~~~-----------g~~~-~lPl~~~~--~~~~vw~ 219 (374)
T PRK06617 154 ICDGANSKVRSHYFANEIEKPYQTALTFNIKHEKPHENCAMEHFLPL-----------GPFA-LLPLKDQY--ASSVIWS 219 (374)
T ss_pred EeCCCCchhHHhcCCCcccccCCeEEEEEEeccCCCCCEEEEEecCC-----------CCEE-EeECCCCC--eEEEEEe
Confidence 99999999999987653 1124443332211111111122333222 2244 56776541 1233333
Q ss_pred ccCCCCC-----c-ccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 333 YIDPQAG-----S-PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 333 ~~~~~~~-----~-~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
....... . ..+.++++.++ +. . ++.+.... ....+|.+.....+++.+|++|+|||||.+||++||
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~-~~~i~~~~-~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQ 291 (374)
T PRK06617 220 TSSDQAALIVNLPVEEVRFLTQRNA---GN---S-LGKITIDS-EISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQ 291 (374)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHhh---ch---h-cCceeecc-ceeEEEeeeeeccceecCCEEEEEcccccCCCCccc
Confidence 2110000 0 01122222211 11 0 12222111 124567776556678899999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFK 486 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~ 486 (549)
|+|++++|+..|++.|. .. ..|+.|++.+..... .++.+++.. ..+|.+...+...+|
T Consensus 292 G~n~gl~Da~~La~~L~----~~-------~~L~~Ye~~R~~~~~-------~~~~~t~~l----~~~f~~~~~~~~~~R 349 (374)
T PRK06617 292 GLNQGIKDIEILSMIVS----NN-------GTLQEYQKLRQEDNF-------IMYKLTDEL----NNIFSNYSKNLRCLR 349 (374)
T ss_pred cHHHHHHHHHHHHHHHc----Cc-------chHHHHHHHHhHHHH-------HHHHHHHHH----HHHHcCCchHHHHHH
Confidence 99999999998887662 11 346899965543221 222344433 457888888888889
Q ss_pred hcChhh--hHhhHHHH
Q 008915 487 QVGIPV--LVDWSGHF 500 (549)
Q Consensus 487 ~~g~~~--~~~~~~~~ 500 (549)
+.|+.. .+.|+|..
T Consensus 350 ~~~l~~~~~~~~~k~~ 365 (374)
T PRK06617 350 QIGFKVINNFKPIKNL 365 (374)
T ss_pred HHHHHHHhcCHHHHHH
Confidence 888874 44555543
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=294.92 Aligned_cols=350 Identities=16% Similarity=0.130 Sum_probs=216.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-------CccccCCHHHHHHHHHcCCCCcccchh-hhhhcc-
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDE-ATATKF- 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-------~r~~~IS~~~l~~L~~lGl~~~~eie~-~i~~~~- 179 (549)
+|||+||||| +|+++|+.|+++|++|+||||.+.+.. .+...|++.+++.|+++|+|+...-.. ......
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 5899999965 699999999999999999999886432 244567899999999999986421110 000100
Q ss_pred --CC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEE
Q 008915 180 --NP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (549)
Q Consensus 180 --~~---~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlV 253 (549)
.. ..+.|... ....+ ..++.+++..|++.|.+++.+. |++++.+++|++++.+++++.|++.+|++++||+|
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~~-~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 83 VWDKDSFGRIAFDDQ-SMGYS-HLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLV 160 (400)
T ss_pred EEeCCCCceEEEccc-ccCCC-ccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEE
Confidence 11 12222210 01111 1346799999999999999886 78999999999999989999999988999999999
Q ss_pred EEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEE
Q 008915 254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l 330 (549)
|+|||.+|.||++++++.. +.+.+.+........+.......+. +.++++ .+|..++. ...+.
T Consensus 161 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~~--~~~~~ 226 (400)
T PRK08013 161 VGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFH-----------GDGILA-FLPLSDPH--LCSIV 226 (400)
T ss_pred EEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEc-----------CCCCEE-EEECCCCC--eEEEE
Confidence 9999999999999987643 2233332211111100111111111 123444 56765431 22333
Q ss_pred EEccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 008915 331 FTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (549)
Q Consensus 331 ~~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G 407 (549)
+........ ....+++.+.+...++. .+...++.... ..+|.......+++.+|++|+|||||.+||++|||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~l~~~~~~~~~-~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG 301 (400)
T PRK08013 227 WSLSPEEAQRMQQAPEEEFNRALAIAFDN----RLGLCELESER-QVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQG 301 (400)
T ss_pred EEcCHHHHHHHHcCCHHHHHHHHHHHHhH----hhCceEecCCc-cEEecceeecccccCCcEEEEechhhcCCccccCc
Confidence 333211000 01112222222222211 01222222111 23455544556788999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhh
Q 008915 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 487 (549)
Q Consensus 408 ~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~ 487 (549)
+|++++|+..|++.|..++..+. +......|+.|++.+... .+ .++.+++.. ..++.++......+|+
T Consensus 302 ~n~gi~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~R~~~----~~---~~~~~~~~~----~~l~~~~~~~~~~~R~ 369 (400)
T PRK08013 302 VNLGFMDAAELIAELRRLHRQGK-DIGQHLYLRRYERSRKHS----AA---LMLAGMQGF----RDLFAGNNPAKKLLRD 369 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHH----HH---HHHHHHHHH----HHHHcCCchHHHHHHH
Confidence 99999999999999988876553 222334578999644322 12 112222222 4567777777778887
Q ss_pred cChhh
Q 008915 488 VGIPV 492 (549)
Q Consensus 488 ~g~~~ 492 (549)
+++..
T Consensus 370 ~~l~~ 374 (400)
T PRK08013 370 IGLKL 374 (400)
T ss_pred HHHHH
Confidence 77664
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=289.47 Aligned_cols=341 Identities=17% Similarity=0.142 Sum_probs=218.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC------CccccCCHHHHHHHHHcCCCCcccchhhhhhccC--
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKFN-- 180 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~------~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~-- 180 (549)
.+||+||||| +|+++|+.|+++|++|+||||.+.++. .+...+++.+++.|+++|+|+.. +......+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~--~~~~~~~~~~~ 83 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAV--RAARAQPYRRM 83 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhh--hHhhCCcccEE
Confidence 6999999975 599999999999999999999876532 24457899999999999999652 211011111
Q ss_pred -------CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEE
Q 008915 181 -------PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (549)
Q Consensus 181 -------~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlV 253 (549)
...+.|... .+ .+..+++.+++..|.+.|.+++.+.|++++.+++|+++..++++++|++++|++++|++|
T Consensus 84 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v 161 (392)
T PRK08773 84 RVWDAGGGGELGFDAD-TL-GREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA 161 (392)
T ss_pred EEEeCCCCceEEechh-cc-CCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence 011222110 11 112345779999999999999998999999999999999988899998888889999999
Q ss_pred EEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCC-ceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDN-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~-~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
|+|||.+|.+++++++..+ +...+.+.. .....+.. ...+.+... +.+. .+|..++ ...+
T Consensus 162 V~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~-----------g~~~-~lP~~~~---~~~~ 225 (392)
T PRK08773 162 IAADGAASTLRELAGLPVSRHDYAQRGVVAF-VDTEHPHQATAWQRFLPT-----------GPLA-LLPFADG---RSSI 225 (392)
T ss_pred EEecCCCchHHHhhcCCceEEEeccEEEEEE-EEccCCCCCEEEEEeCCC-----------CcEE-EEECCCC---ceEE
Confidence 9999999999999876532 111222111 11011111 111111111 1122 4565544 2333
Q ss_pred EEEccCCCC------Ccc-cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCC
Q 008915 330 MFTYIDPQA------GSP-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402 (549)
Q Consensus 330 l~~~~~~~~------~~~-~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~P 402 (549)
++.+..... ... ..+++.+.|...++.+.. ... ...+|.+.....++..+|++|+|||||.+||
T Consensus 226 ~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P 296 (392)
T PRK08773 226 VWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRV--------ASP-RTAFPLRRQLVQQYVSGRVLTLGDAAHVVHP 296 (392)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEe--------cCC-ccEeechhhhhhhhcCCcEEEEechhhcCCC
Confidence 333321000 011 122333333333332221 111 1245666555567889999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHH
Q 008915 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIP 482 (549)
Q Consensus 403 ltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~ 482 (549)
++|||+|++++|+..|++.|.++++.+. +..+...|++||+.+..... -++.+++ .+..+|++.....
T Consensus 297 ~~GqG~n~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~y~~~R~~~~~-------~~~~~~~----~l~~~f~~~~~~~ 364 (392)
T PRK08773 297 LAGQGVNLGLRDVAALQQLVRQAHARRA-DWAAPHRLQRWARTRRSDNT-------VAAYGFD----AINRVFSNDEMHL 364 (392)
T ss_pred chhchhhhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHH-------HHHHHHH----HHHHHHcCCChHH
Confidence 9999999999999999999999887653 34456678999964432210 0111222 2356788888888
Q ss_pred HHHhhcChh
Q 008915 483 SIFKQVGIP 491 (549)
Q Consensus 483 ~~~~~~g~~ 491 (549)
..+|+.|+.
T Consensus 365 ~~~r~~~l~ 373 (392)
T PRK08773 365 TLLRGSVLG 373 (392)
T ss_pred HHHHHHHHH
Confidence 888887776
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=285.83 Aligned_cols=345 Identities=15% Similarity=0.077 Sum_probs=219.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC-CCCccccCCHHHHHHHHHcCCCCcccchhhhhhccC------
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQEWNISRKELLELVESGILVEDDIDEATATKFN------ 180 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~-~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~------ 180 (549)
.+|||+||||| +|+++|+.|+++|++|+||||.+.. ...+..++++.+++.|.++|+|+. +.+.......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~--~~~~~~~~~~~~~~~~ 82 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLER--FLELPHQKVRTLRFEI 82 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhH--HhhcccceeeeEEEEE
Confidence 36999999976 5999999999999999999998643 334566899999999999999864 2211100010
Q ss_pred CC----cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE-EE--EcCCc-EEEcC
Q 008915 181 PN----RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LL--LAEGK-ILSSH 251 (549)
Q Consensus 181 ~~----~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~--~~dG~-~i~Ar 251 (549)
.+ .+.|.. ...+..+++.+++..+.+.|.+++.+. |++++.+++++++..+++++. |. ..+|+ +++|+
T Consensus 83 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~ 159 (407)
T PRK06185 83 GGRTVTLADFSR---LPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRAD 159 (407)
T ss_pred CCeEEEecchhh---cCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeC
Confidence 01 011111 111122345688889999999988765 789999999999988877653 33 34564 79999
Q ss_pred EEEEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCC--ceeeeeecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 252 LIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDN--STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 252 lVI~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~--~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
+||+|||.+|.+|+++++..+ +.+.+..+. ....+.+ ...+.+ . ..++++ .+|.. + .
T Consensus 160 ~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~-----~~g~~~-llP~~-~---~ 221 (407)
T PRK06185 160 LVVGADGRHSRVRALAGLEVREFGAPMDVLWFR--LPREPDDPESLMGRF------G-----PGQGLI-MIDRG-D---Y 221 (407)
T ss_pred EEEECCCCchHHHHHcCCCccccCCCceeEEEe--cCCCCCCCcccceEe------c-----CCcEEE-EEcCC-C---e
Confidence 999999999999999887542 222221111 1100010 011111 1 124454 56765 3 2
Q ss_pred eEEEEEccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCC
Q 008915 327 TTYMFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV 403 (549)
Q Consensus 327 ~~~l~~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pl 403 (549)
....+........ ..+.+++.+.+.+..|.+... ++.++.... ...+|.......++..+|++|+|||||.+||+
T Consensus 222 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-l~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~ 299 (407)
T PRK06185 222 WQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADR-VAELKSWDD-VKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPV 299 (407)
T ss_pred EEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHH-HhhcCCccc-cEEEEEeccccccccCCCeEEEeccccccCcc
Confidence 2233332221111 113445555555555654332 222211111 12456655556678889999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCC--cH
Q 008915 404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQ--II 481 (549)
Q Consensus 404 tg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~--ll 481 (549)
+|||+|++++|+..|++.|.++++.++... ..|+.|++.+..... .++.+++.. ..++.++. .+
T Consensus 300 ~GqG~nlgl~Da~~La~~l~~~~~~~~~~~---~~L~~Y~~~R~~~~~-------~~~~~~~~~----~~~~~~~~~~~~ 365 (407)
T PRK06185 300 GGVGINLAIQDAVAAANILAEPLRRGRVSD---RDLAAVQRRREFPTR-------VTQALQRRI----QRRLLAPALAGR 365 (407)
T ss_pred cccchhHHHHHHHHHHHHHHHHhccCCccH---HHHHHHHHHhhhHHH-------HHHHHHHHH----HHhhccccccCc
Confidence 999999999999999999999987764322 567999965543221 233444443 45778877 77
Q ss_pred HHHHhhcChhh
Q 008915 482 PSIFKQVGIPV 492 (549)
Q Consensus 482 ~~~~~~~g~~~ 492 (549)
..++|++|+..
T Consensus 366 ~~~~R~~~l~~ 376 (407)
T PRK06185 366 GPLGPPLLLRL 376 (407)
T ss_pred cccCCchHHHH
Confidence 88889888874
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=284.49 Aligned_cols=345 Identities=19% Similarity=0.189 Sum_probs=218.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhh--cc-C-CCc-
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT--KF-N-PNR- 183 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~--~~-~-~~~- 183 (549)
.||||||||| +|+++|+.|+++|++|+||||.+.+...+.+.++..+++.|+++|+|+...-...... .+ . .+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 6999999976 5999999999999999999999876666778899999999999999864211000000 00 0 010
Q ss_pred -----ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 184 -----CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 184 -----i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
..|.. ..+ ....+++.+++..+.+.|.+++.+.++..+.+++|+++..+++++.|++++|++++||+||+|||
T Consensus 87 ~~~~~~~~~~-~~~-~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG 164 (388)
T PRK07494 87 IRAPEVRFRA-AEI-GEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADG 164 (388)
T ss_pred CCCceEEEcH-Hhc-CCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecC
Confidence 01110 000 11234678999999999999998876544889999999999999999988888999999999999
Q ss_pred CChHHHHHhcCCC---CCCceeeEEeEeeeccCCCc-eeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEcc
Q 008915 259 NFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (549)
Q Consensus 259 ~~S~vrrql~~~~---~~~~~~~~vg~~~~g~~~~~-~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~ 334 (549)
.+|.+++++++.. .+.+.+.++... ...+... ..+++.. .+.++ .+|..++ ...+++...
T Consensus 165 ~~S~vr~~~g~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~-----------~g~~~-~~Pl~~~---~~~~v~~~~ 228 (388)
T PRK07494 165 RNSPVREAAGIGVRTWSYPQKALVLNFT-HSRPHQNVSTEFHTE-----------GGPFT-QVPLPGR---RSSLVWVVR 228 (388)
T ss_pred CCchhHHhcCCCceecCCCCEEEEEEEe-ccCCCCCEEEEEeCC-----------CCcEE-EEECCCC---cEEEEEECC
Confidence 9999999987653 233334332221 1121111 1222211 12233 4676644 333433322
Q ss_pred CCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 335 DPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 335 ~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
..... ..+.+++.+.+...++.+ ++..+.... ...+|.....+.++..+|++|+|||||.+||++|||+|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~ 303 (388)
T PRK07494 229 PAEAERLLALSDAALSAAIEERMQSM----LGKLTLEPG-RQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLG 303 (388)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh----cCCeEEccC-CcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchh
Confidence 11000 112223333332223222 122211111 1346666555557788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhcChh
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIP 491 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~g~~ 491 (549)
++|+..|++.|..... + ......|+.|++.+......+ +.+++. +..++.++......+|++++.
T Consensus 304 l~Da~~La~~L~~~~~-~---~~~~~~L~~Y~~~R~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~R~~~l~ 368 (388)
T PRK07494 304 LRDVATLVEIVEDRPE-D---PGSAAVLAAYDRARRPDILSR-------TASVDL----LNRSLLSDFLPVQDLRAAGLH 368 (388)
T ss_pred HHHHHHHHHHHHhcCC-C---cchHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHcCCchHHHHHHHHHHH
Confidence 9999999998876321 1 223456799996544322122 222332 256788888888888888877
Q ss_pred h
Q 008915 492 V 492 (549)
Q Consensus 492 ~ 492 (549)
.
T Consensus 369 ~ 369 (388)
T PRK07494 369 L 369 (388)
T ss_pred H
Confidence 3
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=282.98 Aligned_cols=354 Identities=13% Similarity=0.095 Sum_probs=219.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC---------CCCccccCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK---------GREQEWNISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~---------~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
.|||+||||| +|+++|+.|+++|++|+|+||.+.. ...+...+++++++.|+++|+|+. +.......+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~--l~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDG--IAARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhh--hhHhhCccc
Confidence 5899999976 5999999999999999999998731 123455789999999999999864 221100011
Q ss_pred ------CC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEc
Q 008915 180 ------NP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSS 250 (549)
Q Consensus 180 ------~~---~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~A 250 (549)
+. ..+.|.. ..... ..+++.+++..+.+.|.+++.+.|++++.++++++++.++++++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a 157 (405)
T PRK05714 80 SEMQVWDGSGTGQIHFSA-ASVHA-EVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRA 157 (405)
T ss_pred eeEEEEcCCCCceEEecc-cccCC-CccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence 00 1112211 01111 2245678899999999999988899999999999999998999999888889999
Q ss_pred CEEEEccCCChHHHHHhcCCCCC---CceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccc-
Q 008915 251 HLIIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR- 326 (549)
Q Consensus 251 rlVI~ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~- 326 (549)
++||+|||.+|.+|++++...+. .+.+.+........+.......+. + .+.++ .+|..++....
T Consensus 158 ~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~g~~~-~~P~~~~~~~~~ 225 (405)
T PRK05714 158 PLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFT---D--------DGPLA-FLPLERDGDEHW 225 (405)
T ss_pred CEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcC---C--------CCCeE-EeeCCCCCCCCe
Confidence 99999999999999998765322 222221111000000111111111 0 12233 46764321111
Q ss_pred eEEEEEccCCCC------Ccc-cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCC
Q 008915 327 TTYMFTYIDPQA------GSP-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399 (549)
Q Consensus 327 ~~~l~~~~~~~~------~~~-~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~ 399 (549)
....+....... ... ..+++.+.|...++++... .. ...+|++.....++..+|++|+|||||.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~--~~~~~l~~~~~~~~~~~rv~LlGDAAH~ 296 (405)
T PRK05714 226 CSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSA-------DP--RLCVPLRQRHAKRYVEPGLALIGDAAHT 296 (405)
T ss_pred EEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceec-------CC--ccEEecceeehhhhccCCEEEEEecccc
Confidence 122222211000 000 1222223333332222111 11 1235665555567888999999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCC
Q 008915 400 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQ 479 (549)
Q Consensus 400 v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ 479 (549)
+||++|||+|++++|+..|++.|..++..+. +.+....|+.|++.+..... .++.+++.. ..++.++.
T Consensus 297 ~~P~~GQG~n~al~DA~~La~~L~~~~~~g~-~~~~~~~L~~Ye~~R~~~~~-------~~~~~~~~~----~~~~~~~~ 364 (405)
T PRK05714 297 IHPLAGQGVNLGFLDAAVLAEVLLHAAERGE-RLADVRVLSRFERRRMPHNL-------ALMAAMEGF----ERLFQADP 364 (405)
T ss_pred CCCcccccccHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHCCCc
Confidence 9999999999999999999999988876552 12233567999965442221 222333322 45778888
Q ss_pred cHHHHHhhcChhh--hHhhHHHH
Q 008915 480 IIPSIFKQVGIPV--LVDWSGHF 500 (549)
Q Consensus 480 ll~~~~~~~g~~~--~~~~~~~~ 500 (549)
.+...+|+.++.. .+.+++.+
T Consensus 365 ~~~~~~R~~~l~~~~~~~~~k~~ 387 (405)
T PRK05714 365 LPLRWLRNTGLKLVDQMPEAKAL 387 (405)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHH
Confidence 8888889888875 34455543
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=287.11 Aligned_cols=358 Identities=16% Similarity=0.164 Sum_probs=220.0
Q ss_pred ccEEEEcch-HHHHHHHHHHh----CCCcEEEEccCCCCC-------------CCccccCCHHHHHHHHHcCCCCcccch
Q 008915 111 FDVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKG-------------REQEWNISRKELLELVESGILVEDDID 172 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr----~GlrVlLIEr~~~~~-------------~~r~~~IS~~~l~~L~~lGl~~~~eie 172 (549)
|||+||||| +|+++|+.|++ +|++|+||||++.+. ..+..+|++.+++.|+.+|+|+.. .
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l--~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHI--Q 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhh--h
Confidence 799999976 59999999998 899999999965332 235678999999999999998642 1
Q ss_pred hhhhhcc------C---CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcC---CEEEeCceEEEEEEE------
Q 008915 173 EATATKF------N---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTY------ 234 (549)
Q Consensus 173 ~~i~~~~------~---~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G---~~v~~~t~v~~i~~~------ 234 (549)
..-...+ . ...+.|.... ....+++.+++..|.+.|.+++.+.+ ++++.+++|++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~ 155 (437)
T TIGR01989 79 SDRIQPFGRMQVWDGCSLALIRFDRDN---GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPND 155 (437)
T ss_pred hhcCCceeeEEEecCCCCceEEeecCC---CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccC
Confidence 1100000 0 0112222111 11234678999999999999998775 799999999999752
Q ss_pred -CCEEEEEEcCCcEEEcCEEEEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccC-CCceeeeeecCCcccccCCCC
Q 008915 235 -ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSE 309 (549)
Q Consensus 235 -~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~-~~~~~ei~~~~~~~~~~~~~~ 309 (549)
+++++|++.+|++++|++||+|||.+|.+|+++++... +.+.+.+.....+..+ .+...+.+...
T Consensus 156 ~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~---------- 225 (437)
T TIGR01989 156 NSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPT---------- 225 (437)
T ss_pred CCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCC----------
Confidence 46788988889999999999999999999999987643 3333333222111111 11222333221
Q ss_pred ceeEEEEecCCCCCccceEEEEEccCCCC------CcccHHHHH-HHH---HHhCcc----------cc---cccC----
Q 008915 310 VQLFWEAFPAGSGPLDRTTYMFTYIDPQA------GSPKLEELL-ERY---WDLMPE----------YQ---GVTL---- 362 (549)
Q Consensus 310 ~~~~W~~fP~~~g~~~~~~~l~~~~~~~~------~~~~L~~l~-~~~---~~~lp~----------~~---~~~l---- 362 (549)
+.++ .+|..++ ....++....... ....+.+.+ +.+ ....|. +. ...+
T Consensus 226 -g~~~-~lPl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~ 300 (437)
T TIGR01989 226 -GPIA-LLPLPDN---NSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSK 300 (437)
T ss_pred -CCEE-EeECCCC---CEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 2233 3565544 2323333211000 001112212 111 000010 00 0000
Q ss_pred -----C-c-eeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhh
Q 008915 363 -----D-N-LEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYS 435 (549)
Q Consensus 363 -----~-~-~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~ 435 (549)
. . .++.......+|.....+.++..+|++|+|||||.+||++|||+|++++|+..|++.|.++++.+. +.++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~-~~~~ 379 (437)
T TIGR01989 301 SCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGA-DIGS 379 (437)
T ss_pred cccccCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCC-ChhH
Confidence 0 0 000111113456655556678889999999999999999999999999999999999999887653 3334
Q ss_pred hHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhcChhh--hHhhHHHH
Q 008915 436 LSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPV--LVDWSGHF 500 (549)
Q Consensus 436 l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~g~~~--~~~~~~~~ 500 (549)
...|+.|++.+..... .++.+++.. ..++.++......+|..++.. -+.|++++
T Consensus 380 ~~~L~~Y~~~R~~~~~-------~v~~~t~~l----~~l~~~~~~~~~~~R~~~l~~~~~~~~~k~~ 435 (437)
T TIGR01989 380 ISSLKPYERERYAKNV-------VLLGLVDKL----HKLYATDFPPVVALRTFGLNLTNYIGPLKNF 435 (437)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHcCCccHHHHHHHHHHHHhhhCHHhHHh
Confidence 4568999965443322 223344433 456788888888888887764 34444443
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-31 Score=280.84 Aligned_cols=349 Identities=16% Similarity=0.124 Sum_probs=213.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCC-----CCccccCCHHHHHHHHHcCCCCccc-chhhhhhc---
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKG-----REQEWNISRKELLELVESGILVEDD-IDEATATK--- 178 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~-----~~r~~~IS~~~l~~L~~lGl~~~~e-ie~~i~~~--- 178 (549)
.|||+||||| +|+++|+.|+++|++|+|+|+.. .+. ..+...|++++++.|+++|+|++.. ........
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 5899999976 59999999999999999999962 211 2355679999999999999986421 00000000
Q ss_pred cCC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 179 FNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 179 ~~~---~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
++. +.+.|... .... ..+++.+++..|.+.|.+++.+. |++++.+++|+++..+++++.|++++|++++||+||
T Consensus 84 ~~~~~~~~~~~~~~-~~~~-~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAE-SMAQ-PDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEecc-ccCC-CccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEE
Confidence 011 12222211 1111 12456788899999999998775 689999999999999889999999889999999999
Q ss_pred EccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCCce-eeeeecCCcccccCCCCceeEEEEecCCCCCccceEEE
Q 008915 255 DAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~-~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l 330 (549)
+|||.+|.+|++++.+.. +.+.+.... +....+.... .+.+.. + +.+. .+|..++ ....+.
T Consensus 162 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~----------~-g~~~-~lp~~~~--~~~~~~ 226 (405)
T PRK08850 162 GADGANSWLRRQMDIPLTHWDYGHSALVAN-VRTVDPHNSVARQIFTP----------Q-GPLA-FLPMSEP--NMSSIV 226 (405)
T ss_pred EeCCCCChhHHHcCCCeeEEeeccEEEEEE-EEccCCCCCEEEEEEcC----------C-CceE-EEECCCC--CeEEEE
Confidence 999999999999987643 223332221 1111111111 112111 1 2222 4566543 122223
Q ss_pred EEccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 008915 331 FTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (549)
Q Consensus 331 ~~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G 407 (549)
+.......+ ..+.+++.+...+.++.. +...+.... ...+|.......++..+|++|+|||||.+||++|||
T Consensus 227 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG 301 (405)
T PRK08850 227 WSTEPLRAEALLAMSDEQFNKALTAEFDNR----LGLCEVVGE-RQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQG 301 (405)
T ss_pred EECCHHHHHHHHcCCHHHHHHHHHHHHhhh----hCcEEEccc-ccEEecceeeccccccCcEEEEEhhhhcCCcccccc
Confidence 322110000 001122222222222110 111111111 123566554556788999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhh
Q 008915 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 487 (549)
Q Consensus 408 ~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~ 487 (549)
+|++++|+..|++.|..++..+. +.+....|+.|++.+.... + .++.+++.. ..++.++......+|.
T Consensus 302 ~n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~R~~~~----~---~~~~~~~~l----~~~~~~~~~~~~~~R~ 369 (405)
T PRK08850 302 VNLGLLDAASLAQEILALWQQGR-DIGLKRNLRGYERWRKAEA----A---KMIAAMQGF----RDLFSGSNPAKKLVRG 369 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhHHH----H---HHHHHHHHH----HHHHCCCchHHHHHHH
Confidence 99999999999999988876542 2233456799996543222 2 222333322 3466677777777787
Q ss_pred cChhh
Q 008915 488 VGIPV 492 (549)
Q Consensus 488 ~g~~~ 492 (549)
.++..
T Consensus 370 ~~l~~ 374 (405)
T PRK08850 370 IGMSL 374 (405)
T ss_pred HHHHH
Confidence 77664
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=281.30 Aligned_cols=349 Identities=15% Similarity=0.126 Sum_probs=211.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-------CCccccCCHHHHHHHHHcCCCCcccchhhhhhccC-
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-------REQEWNISRKELLELVESGILVEDDIDEATATKFN- 180 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-------~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~- 180 (549)
.|||+||||| +|+++|+.|+++|++|+|+|+.+... ..++..|++++++.|+.+|+|+.. .......+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~--~~~~~~~~~~ 80 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSI--VAMRVCPYKR 80 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhh--hHhhCCccce
Confidence 4899999976 59999999999999999999875321 124457999999999999998642 111000010
Q ss_pred -------CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCE
Q 008915 181 -------PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (549)
Q Consensus 181 -------~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~Arl 252 (549)
.....|.. ..+.. ..+++.+++..|.+.|.+++.+. +++++.++++++++.++++++|++++|.+++|++
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~-~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l 158 (384)
T PRK08849 81 LETWEHPECRTRFHS-DELNL-DQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW 158 (384)
T ss_pred EEEEeCCCceEEecc-cccCC-CccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence 01111111 11111 12356777778889999988665 5799999999999999999999999999999999
Q ss_pred EEEccCCChHHHHHhcCCC---CCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 253 IIDAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~---~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
||+|||.+|++|++++++. .+.+.+.++.......+.+...+.+...++.. ..|..++ ...+
T Consensus 159 vIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~------------~~pl~~~---~~~~ 223 (384)
T PRK08849 159 VIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRS------------FLPLCGN---QGSL 223 (384)
T ss_pred EEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEE------------EeEcCCC---ceEE
Confidence 9999999999999988653 23333333221111111111112221111111 1344322 1112
Q ss_pred EEEccCCCC---CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 330 l~~~~~~~~---~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
++....... ...+.+++.+.+.+.+|.. +..+... ....+|.......++..+|++|+|||||.++|+.||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQ 297 (384)
T PRK08849 224 VWYDSPKRIKQLSAMNPEQLRSEILRHFPAE----LGEIKVL--QHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQ 297 (384)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHhhhh----hCcEEec--cceEeeccccccchhccCCEEEEEcccccCCCCccc
Confidence 221110000 0002233333333333321 1222222 123566655455678889999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFK 486 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~ 486 (549)
|+|++++|+..|++.+.. .+. ...+.|+.||+.+..... ..+.+++.. ..++.++..+...+|
T Consensus 298 G~n~al~Da~~L~~~l~~---~~~---~~~~~L~~Ye~~R~~~~~-------~~~~~~~~~----~~~~~~~~~~~~~~R 360 (384)
T PRK08849 298 GVNLGFKDVDVLLAETEK---QGV---LNDASFARYERRRRPDNL-------LMQTGMDLF----YKTFSNSLTPLKFVR 360 (384)
T ss_pred hHhHHHHHHHHHHHHHHh---cCC---CcHHHHHHHHHHHhHHHH-------HHHHHHHHH----HHHhcCCchHHHHHH
Confidence 999999999998876642 221 223457899965432211 112233322 457777777778888
Q ss_pred hcChhh--hHhhHHHH
Q 008915 487 QVGIPV--LVDWSGHF 500 (549)
Q Consensus 487 ~~g~~~--~~~~~~~~ 500 (549)
+.++.. .++++++.
T Consensus 361 ~~~l~~~~~~~~~k~~ 376 (384)
T PRK08849 361 NAALKLAENSGPLKTQ 376 (384)
T ss_pred HHHHHHHhccHHHHHH
Confidence 887775 45555544
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=273.80 Aligned_cols=307 Identities=17% Similarity=0.145 Sum_probs=188.2
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
...+|||+||||| +|+++|..||++|++|+|+||+..........|+. ..+.++|+++. .+........+.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~---~~l~~lgl~~~-----~~~~~i~~~~~~ 107 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPL---CMVGEFDLPLD-----IIDRKVTKMKMI 107 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccH---hHHhhhcCcHH-----HHHHHhhhheEe
Confidence 3447999999965 69999999999999999999986432222234654 35566777532 111111111111
Q ss_pred ccCCcccccc-----ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE---CCEEEEEEcC-------C--cEE
Q 008915 186 FEGKGEIWVE-----DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAE-------G--KIL 248 (549)
Q Consensus 186 f~~~~~l~~~-----~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dgv~V~~~d-------G--~~i 248 (549)
..+...+..+ ......++|..|+++|.+++.++|++++.+ +++++... ++.+.|++.+ | .++
T Consensus 108 ~p~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v 186 (450)
T PLN00093 108 SPSNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTL 186 (450)
T ss_pred cCCceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEE
Confidence 1111111111 111124899999999999999999999876 57777642 2456666532 3 479
Q ss_pred EcCEEEEccCCChHHHHHhcCCCCCCceeeEEeEeeec----cC-CCceeeeeecCCcccccCCCCceeEEEEecCCCCC
Q 008915 249 SSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG----FK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGP 323 (549)
Q Consensus 249 ~ArlVI~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g----~~-~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~ 323 (549)
+||+||+|||++|.++++++.+.. ..+..+...... .+ +....++++... +.+ ..|.| +||.++.
T Consensus 187 ~a~~VIgADG~~S~vrr~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~p-----~~Y~W-ifP~g~~- 256 (450)
T PLN00093 187 EVDAVIGADGANSRVAKDIDAGDY--DYAIAFQERIKIPDDKMEYYEDLAEMYVGDD-VSP-----DFYGW-VFPKCDH- 256 (450)
T ss_pred EeCEEEEcCCcchHHHHHhCCCCc--ceeEEEEEEEeCChhhccccCCeEEEEeCCC-CCC-----CceEE-EEECCCc-
Confidence 999999999999999999976532 222222111110 00 122345544332 222 47889 8999853
Q ss_pred ccceEEEEEccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCC
Q 008915 324 LDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV 403 (549)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pl 403 (549)
..+.+..... ..+++++++.+...+++. +...++.+...+.+|.. ...++..+|++|||||||+++|+
T Consensus 257 --~~VG~g~~~~----~~~~~~~~~~l~~~~~~~----l~~~~~~~~~~~~ip~~--~~~~~~~~~vlLvGDAAg~v~P~ 324 (450)
T PLN00093 257 --VAVGTGTVVN----KPAIKKYQRATRNRAKDK----IAGGKIIRVEAHPIPEH--PRPRRVRGRVALVGDAAGYVTKC 324 (450)
T ss_pred --EEEEEEEccC----CCChHHHHHHHHHHhhhh----cCCCeEEEEEEEEcccc--cccceeCCCcEEEeccccCCCcc
Confidence 3344433221 224444444333332211 11222334444566763 23466789999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhc
Q 008915 404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKL 445 (549)
Q Consensus 404 tg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l 445 (549)
+|+|++.+++++..+++.|.++++.+.. ..+.+.|+.|++.
T Consensus 325 tGeGI~~Am~sg~~AAe~i~~~~~~g~~-~~s~~~L~~Y~~~ 365 (450)
T PLN00093 325 SGEGIYFAAKSGRMCAEAIVEGSENGTR-MVDEADLREYLRK 365 (450)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCC-cCCHHHHHHHHHH
Confidence 9999999999999999999999987631 1123446889863
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-30 Score=273.67 Aligned_cols=345 Identities=19% Similarity=0.189 Sum_probs=212.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCC--CcEEEEccCCCCC---CCccccCCHHHHHHHHHcCCCCcccchhhhhh--cc-C
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATAT--KF-N 180 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~G--lrVlLIEr~~~~~---~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~--~~-~ 180 (549)
.|||+||||| +|+++|+.|+++| ++|+|+||++... ..+...|++++++.|+++|+++...-...... .+ .
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 3899999975 5999999999995 9999999987643 23567899999999999999864210000000 00 0
Q ss_pred --C------CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCE
Q 008915 181 --P------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (549)
Q Consensus 181 --~------~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~Arl 252 (549)
. ..+.|.+. ........+.+++..|.+.|.+++.+.|++++.+++|++++.+++++.|++++|.+++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 158 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGE--VEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL 158 (403)
T ss_pred CCCCCCCccceEEeccc--ccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence 0 00111110 0011223457899999999999999889999999999999998899999988888999999
Q ss_pred EEEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
||+|||.+|.+++++++... +...+.++. .....+........+ . ..+++| .+|..++ ...+
T Consensus 159 vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~-----~~g~~~-~~Pl~~~---~~~~ 223 (403)
T PRK07333 159 LVAADGARSKLRELAGIKTVGWDYGQSGIVCT-VEHERPHGGRAEEHF-----L-----PAGPFA-ILPLKGN---RSSL 223 (403)
T ss_pred EEEcCCCChHHHHHcCCCcccccCCCEEEEEE-EEcCCCCCCEEEEEe-----C-----CCCceE-EeECCCC---CeEE
Confidence 99999999999999876532 222332221 111111111111111 1 134556 6888766 3333
Q ss_pred EEEccCCC------CCcc-cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCC
Q 008915 330 MFTYIDPQ------AGSP-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402 (549)
Q Consensus 330 l~~~~~~~------~~~~-~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~P 402 (549)
.+...... .... ...++.+.|...++.+ ..... ...+|.......++..+|++|||||||.++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P 294 (403)
T PRK07333 224 VWTERTADAERLVALDDLVFEAELEQRFGHRLGEL--------KVLGK-RRAFPLGLTLARSFVAPRFALVGDAAHGIHP 294 (403)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCce--------EeccC-ccEeechhhhhhhccCCCEEEEechhhcCCC
Confidence 33321100 0000 1122222222222221 11111 0124444334456788999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHH
Q 008915 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIP 482 (549)
Q Consensus 403 ltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~ 482 (549)
++|||+|++++|+..|++.|..+++.+. +......|+.|++.+......+ +..++.. ..++.++..+.
T Consensus 295 ~~GqG~n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Ye~~R~~~~~~~-------~~~~~~~----~~~~~~~~~~~ 362 (403)
T PRK07333 295 IAGQGLNLGLKDVAALAEVVVEAARLGL-DIGSLDVLERYQRWRRFDTVRM-------GVTTDVL----NRLFSNDSTLL 362 (403)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHhHHHHHH-------HHHHHHH----HHHHcCCchHH
Confidence 9999999999999999999998886542 2223456789996443221111 1122211 34566666666
Q ss_pred HHHhhcChhh
Q 008915 483 SIFKQVGIPV 492 (549)
Q Consensus 483 ~~~~~~g~~~ 492 (549)
..+|+.++..
T Consensus 363 ~~~r~~~~~~ 372 (403)
T PRK07333 363 RSVRDIGLGL 372 (403)
T ss_pred HHHHHHHHHH
Confidence 6667665553
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=273.62 Aligned_cols=347 Identities=20% Similarity=0.203 Sum_probs=206.6
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC---CccccCCHHHHHHHHHcCCCCcccchhhhh--h--cc-
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATA--T--KF- 179 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~---~r~~~IS~~~l~~L~~lGl~~~~eie~~i~--~--~~- 179 (549)
.+|||+||||| +|+++|+.|+++|++|+|+||++.++. .+...+++..++.|.++|++++. ..... . .+
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l--~~~~~~~~~~~~~ 94 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKI--LPQIGKFRQIRLS 94 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhh--HhhcCCccEEEEE
Confidence 36999999965 699999999999999999999987642 24568999999999999998642 11100 0 00
Q ss_pred --C-CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcC-C--cEEEcCE
Q 008915 180 --N-PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAE-G--KILSSHL 252 (549)
Q Consensus 180 --~-~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~d-G--~~i~Arl 252 (549)
. ...+.|.. ..+.. ...++.+.+..|.+.|.+++.+. +++++.++++++++.+++++.|++++ + .+++||+
T Consensus 95 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adl 172 (415)
T PRK07364 95 DADYPGVVKFQP-TDLGT-EALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKL 172 (415)
T ss_pred eCCCCceeeecc-ccCCC-CccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeE
Confidence 0 00111110 01111 11234455557888999988775 67999999999999888888888863 2 3699999
Q ss_pred EEEccCCChHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
||+|||.+|.+|++++.... +...|..........+.....+.+. ..+++| .+|..++ ...+
T Consensus 173 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~---~~~~ 237 (415)
T PRK07364 173 VVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFW-----------PSGPFA-ILPLPGN---RCQI 237 (415)
T ss_pred EEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEec-----------CCCCeE-EeECCCC---CEEE
Confidence 99999999999999876432 1122221111110000111111111 123455 6788755 2333
Q ss_pred EEEccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 330 MFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 330 l~~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
++.......+ ..+.+++.+.+.+.++.. +.+++.... ...+|.......++..+|++|||||||.++|++||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~Gq 312 (415)
T PRK07364 238 VWTAPHAQAKALLALPEAEFLAELQQRYGDQ----LGKLELLGD-RFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQ 312 (415)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHhhhh----hcCceecCC-CceecchhhhhhhhcCCcEEEEecccccCCCcccc
Confidence 3322110000 001122222222222211 011111111 11345544344567889999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFK 486 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~ 486 (549)
|+|++++|+..|++.+..+++.+. +..+.+.|+.|++.+.... . .++.+++.. ..++.++..+...+|
T Consensus 313 G~n~al~DA~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~R~~~~----~---~~~~~s~~~----~~~~~~~~~~~~~~r 380 (415)
T PRK07364 313 GLNLGIRDAAALAQVLQTAHQRGE-DIGSLAVLKRYERWRKREN----W---LILGFTDLL----DRLFSNQWWPLVVVR 380 (415)
T ss_pred cHhHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHH----H---HHHHHHHHH----HHHHcCCchHHHHHH
Confidence 999999999999999988875432 2222356789996433221 1 112222222 345677777777777
Q ss_pred hcChh
Q 008915 487 QVGIP 491 (549)
Q Consensus 487 ~~g~~ 491 (549)
+.++.
T Consensus 381 ~~~~~ 385 (415)
T PRK07364 381 RLGLW 385 (415)
T ss_pred HHHHH
Confidence 76555
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=265.90 Aligned_cols=311 Identities=23% Similarity=0.300 Sum_probs=208.2
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCCCCcc--ccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~--~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
.+|||||||| |+|+++|+.||++|++|+|+||+..++.+.+ ..+++..++.+ ......+ +........+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l---~~~~~~~----i~~~v~~~~~~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEEL---IPDFDEE----IERKVTGARIY 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHh---CCCcchh----hheeeeeeEEE
Confidence 3799999995 5699999999999999999999999887543 35666655544 2211111 22222222233
Q ss_pred ccCCc-cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC-cEEEcCEEEEccCCChHH
Q 008915 186 FEGKG-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 186 f~~~~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG-~~i~ArlVI~ADG~~S~v 263 (549)
+.+.. .+..+...++.|++..|+++|.+++.++|++++.+++++++..+++++++.+..+ .+++||+||+|||.+|.+
T Consensus 75 ~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 75 FPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSAL 154 (396)
T ss_pred ecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHH
Confidence 33111 1222223478899999999999999999999999999999999998887776544 689999999999999999
Q ss_pred HHHhcCCC-CCCceeeEEeEeeeccC-CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCcc
Q 008915 264 VKQIRSGR-KPDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP 341 (549)
Q Consensus 264 rrql~~~~-~~~~~~~~vg~~~~g~~-~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~ 341 (549)
++.++... ++......+... ...+ +....+.++...... ..+|.| .||.+++. ....+..........+
T Consensus 155 ~~~lg~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~-----~~Gy~w-ifP~~~~~--~~VG~g~~~~~~~~~~ 225 (396)
T COG0644 155 ARKLGLKDRKPEDYAIGVKEV-IEVPDDGDVEEFLYGPLDVG-----PGGYGW-IFPLGDGH--ANVGIGVLLDDPSLSP 225 (396)
T ss_pred HHHhCCCCCChhheeEEeEEE-EecCCCCceEEEEecCCccC-----CCceEE-EEECCCce--EEEEEEEecCCcCCCc
Confidence 99998762 222222111111 1222 122223332211122 368999 89999762 3444443333211223
Q ss_pred cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHH
Q 008915 342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTG 421 (549)
Q Consensus 342 ~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~ 421 (549)
.. +++++|....+. .....+ .+......+.+|.......+.+.+++++|||||++++|++|+|+..++..+..+++.
T Consensus 226 ~~-~~l~~f~~~~~~-~~~~~~-~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~ 302 (396)
T COG0644 226 FL-ELLERFKEHPAI-RKLLLG-GKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEA 302 (396)
T ss_pred hH-HHHHHHHhCccc-chhccC-CceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHH
Confidence 44 788888765432 221111 233445567888876433337889999999999999999999999999999999999
Q ss_pred HHHHHhCCCCChhhhHhhhhhhh
Q 008915 422 VYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 422 i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
|.++++.+ ... |..|++
T Consensus 303 i~~~~~~~---~~~---l~~Y~~ 319 (396)
T COG0644 303 IAEALEGG---EEA---LAEYER 319 (396)
T ss_pred HHHHHHcC---hhH---HHHHHH
Confidence 99999876 233 456874
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=268.66 Aligned_cols=349 Identities=13% Similarity=0.117 Sum_probs=208.6
Q ss_pred CCCCcccEEEEcch-HHHHHHHHHHhCC----CcEEEEccCCCCC---CCccccCCHHHHHHHHHcCCCCccc--chhhh
Q 008915 106 KAVGTFDVIVCGGT-LGIFIATALSFKG----LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDD--IDEAT 175 (549)
Q Consensus 106 ~~~~~yDVIIVGGg-~G~~~Aa~LAr~G----lrVlLIEr~~~~~---~~r~~~IS~~~l~~L~~lGl~~~~e--ie~~i 175 (549)
+.+..|||+||||| +|+++|+.|+++| ++|+|+|+.+.+. ..+...+++.+++.|+++|+|+... ++.+.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~ 86 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH 86 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence 45567999999975 6999999999987 5799999986543 2367789999999999999997521 11111
Q ss_pred hhcc-CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC---cEEEcC
Q 008915 176 ATKF-NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSH 251 (549)
Q Consensus 176 ~~~~-~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG---~~i~Ar 251 (549)
..+. ..+...|.. .....+ .+++.+++..|.+.|.+++.+.|++++.++++++++.++++++++++++ ++++||
T Consensus 87 ~~~~~~~g~~~~~~-~~~~~~-~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~ 164 (398)
T PRK06996 87 VSQRGHFGRTLIDR-DDHDVP-ALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRAR 164 (398)
T ss_pred EecCCCCceEEecc-cccCCC-cCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeee
Confidence 1110 111222221 111122 2467899999999999999999999999999999999999999998754 589999
Q ss_pred EEEEccCC-ChHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccce
Q 008915 252 LIIDAMGN-FSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT 327 (549)
Q Consensus 252 lVI~ADG~-~S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~ 327 (549)
+||+|||. .|.++++++.... +.+.+.+.....+..+.....+.+...++ + ..+|..++.....
T Consensus 165 lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~----------~--~~lp~~~~~~~~~ 232 (398)
T PRK06996 165 IAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGP----------L--ALLPLGGPRQADY 232 (398)
T ss_pred EEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCC----------e--EEeECCCCCCCcE
Confidence 99999997 5778888766532 22334322111111111111111111111 1 1345543210012
Q ss_pred EEEEEccCCCC---CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCC
Q 008915 328 TYMFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS 404 (549)
Q Consensus 328 ~~l~~~~~~~~---~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plt 404 (549)
.+++....... ...+.++..+.+.+.++.. +..+...... ..+|.+.....++..+||+|+|||||.+||++
T Consensus 233 ~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~-~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~ 307 (398)
T PRK06996 233 ALVWCCAPDEAARRAALPDDAFLAELGAAFGTR----MGRFTRIAGR-HAFPLGLNAARTLVNGRIAAVGNAAQTLHPVA 307 (398)
T ss_pred EEEEECCHHHHHHHHcCCHHHHHHHHHHHhccc----cCceEEecce-EEEeeecccccceecCCEEEEEhhhccCCccc
Confidence 22222211000 0001112222222222110 1112111111 13566655556788899999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHH
Q 008915 405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSI 484 (549)
Q Consensus 405 g~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~ 484 (549)
|||+|++++|+..|++.|.. .+. . ...|..|++.+..... .++.+++.. ..++.++..+...
T Consensus 308 GQG~n~ai~Da~~La~~L~~---~~~-~---~~~L~~Y~~~R~~~~~-------~~~~~s~~l----~~~~~~~~~~~~~ 369 (398)
T PRK06996 308 GQGLNLGLRDAHTLADALSD---HGA-T---PLALATFAARRALDRR-------VTIGATDLL----PRLFTVDSRPLAH 369 (398)
T ss_pred chhHHHHHHHHHHHHHHHHh---cCC-c---HHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHcCCchHHHH
Confidence 99999999999999988854 222 2 2347899964432211 222333332 3456666667777
Q ss_pred HhhcChh
Q 008915 485 FKQVGIP 491 (549)
Q Consensus 485 ~~~~g~~ 491 (549)
+|+.++.
T Consensus 370 ~R~~~l~ 376 (398)
T PRK06996 370 LRGAALT 376 (398)
T ss_pred HHhHHHH
Confidence 7777665
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=267.24 Aligned_cols=358 Identities=18% Similarity=0.181 Sum_probs=213.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC------CCccccCCHHHHHHHHHcCCCCcccchhh-hhhc---
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG------REQEWNISRKELLELVESGILVEDDIDEA-TATK--- 178 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~------~~r~~~IS~~~l~~L~~lGl~~~~eie~~-i~~~--- 178 (549)
+|||+||||| +|+++|+.|+++|++|+|+||.+.++ ..+...|++..++.|+++|+++...-... ....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 5999999976 59999999999999999999998743 12345688889999999999754211100 0000
Q ss_pred cC---CCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 179 FN---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 179 ~~---~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
+. ...+.|... . .....+++.+++..+.+.|.+++.+ .|++++.+++|++++.+++++.|++++|++++||+||
T Consensus 83 ~~~~~~~~~~~~~~-~-~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 83 LNGRSPFALTFDAR-G-RGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLV 160 (392)
T ss_pred EcCCCCceeEeehh-h-cCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEE
Confidence 00 011112110 0 0112235668888899999988854 5889999999999998888888988888899999999
Q ss_pred EccCCChHHHHHhcCCCCCC---ceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 255 DAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~~~~---~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
+|||.+|.+++++++..... ..+.. .......++......++ + ..+.+| .||..++ ...+.+
T Consensus 161 ~AdG~~S~vr~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~-~~~~~~-~~P~~~~---~~~~~~ 225 (392)
T PRK09126 161 AADSRFSATRRQLGIGADMHDFGRTMLV-CRMRHELPHHHTAWEWF---------G-YGQTLA-LLPLNGH---LSSLVL 225 (392)
T ss_pred EeCCCCchhhHhcCCCccccccCCeEEE-EEEeccCCCCCEEEEEe---------c-CCCCeE-EeECCCC---CEEEEE
Confidence 99999999999987654321 11211 11111111111000000 0 123455 6888765 334444
Q ss_pred EccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCch
Q 008915 332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (549)
Q Consensus 332 ~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~ 408 (549)
........ ..+.+++.++..+.++.. +........ ...+|.......++..+|++|+|||||.++|++|||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~ 300 (392)
T PRK09126 226 TLPPDQIEALLALDPEAFAAEVTARFKGR----LGAMRLVSS-RHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGF 300 (392)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCC-CcEeechHHHHHHHhhcceEEEehhhhcCCCcccchh
Confidence 33221000 001122222211222111 111111111 1234444333446778999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhc
Q 008915 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQV 488 (549)
Q Consensus 409 g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~ 488 (549)
|++++|+..|++.|..+++.+. +....+.|+.|++........... .++. +..++.++......+|+.
T Consensus 301 ~~ai~da~~la~~L~~~~~~~~-~~~~~~~l~~Y~~~r~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~r~~ 368 (392)
T PRK09126 301 NLGLKGQDILARLILAAARRGQ-DIGAASLLERYERKHRLATRPLYH-------ATNA----IAALYTDDRPPARLLRRA 368 (392)
T ss_pred hhhHHHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHHCCCchHHHHHHHH
Confidence 9999999999999998886431 112234568999654433222221 2221 234566666666677776
Q ss_pred Chhhh--HhhHHHHH
Q 008915 489 GIPVL--VDWSGHFF 501 (549)
Q Consensus 489 g~~~~--~~~~~~~~ 501 (549)
.+..+ .+|++.++
T Consensus 369 ~~~~~~~~~~~~~~~ 383 (392)
T PRK09126 369 VLRAANRFPPLKQAI 383 (392)
T ss_pred HHHHHhhChHHHHHH
Confidence 66543 34555443
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=260.24 Aligned_cols=297 Identities=18% Similarity=0.151 Sum_probs=188.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccC-CCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~-~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
||||||||| +|+++|..||++|++|+|+||+ +.+.. ..+.|+.. .+.++|+.+ +.+...+....+....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~-cg~~i~~~---~l~~l~i~~-----~~~~~~~~~~~~~~~~ 71 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKP-CGGAIPPC---LIEEFDIPD-----SLIDRRVTQMRMISPS 71 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCc-CcCCcCHh---hhhhcCCch-----HHHhhhcceeEEEcCC
Confidence 799999965 6999999999999999999998 32222 34567764 456667653 2222222211111111
Q ss_pred Cccc--cccccccc--eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC------C--cEEEcCEEEEc
Q 008915 189 KGEI--WVEDILNL--GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE------G--KILSSHLIIDA 256 (549)
Q Consensus 189 ~~~l--~~~~~l~~--~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d------G--~~i~ArlVI~A 256 (549)
+..+ ..+...++ .+++..|++.|.+++.+.|++++.+ +|+++..+++++.|++.+ | .+++||+||+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~A 150 (388)
T TIGR02023 72 RVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGA 150 (388)
T ss_pred CceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEEC
Confidence 1111 11111123 5899999999999999999999765 699998888888887653 2 37999999999
Q ss_pred cCCChHHHHHhcCCCCCCceeeEEeEeeec----cC-CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 257 MGNFSPVVKQIRSGRKPDGVCLVVGSCARG----FK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 257 DG~~S~vrrql~~~~~~~~~~~~vg~~~~g----~~-~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
||.+|.++++++.+.+.. ....+...... .. +.+..++++.. ++.+ .+|.| .||.++. ....+.
T Consensus 151 dG~~S~v~r~lg~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-----~~y~w-v~P~~~~---~~vg~~ 219 (388)
T TIGR02023 151 DGANSPVAKELGLPKNLP-RVIAYQERIKLPDDKMAYYEELADVYYGG-EVSP-----DFYGW-VFPKGDH---IAVGTG 219 (388)
T ss_pred CCCCcHHHHHcCCCCCCc-EEEEEEEEecCCchhcccCCCeEEEEECC-CcCC-----CceEE-EeeCCCe---eEEeEE
Confidence 999999999998753321 11111111110 00 12233443332 2222 36899 8999753 333332
Q ss_pred EccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 332 TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 332 ~~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
... ...+.+++++.+.+.++ + ...+..+...+.+|.. ...++..+|+++||||||+++|++|+|++.+
T Consensus 220 ~~~----~~~~~~~~~~~l~~~~~-~-----~~~~~~~~~~~~ip~~--~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A 287 (388)
T TIGR02023 220 TGT----HGFDAKQLQANLRRRAG-L-----DGGQTIRREAAPIPMK--PRPRWDFGRAMLVGDAAGLVTPASGEGIYFA 287 (388)
T ss_pred ECC----CCCCHHHHHHHHHHhhC-C-----CCceEeeeeeEecccc--ccccccCCCEEEEeccccCcCCcccccHHHH
Confidence 221 12245555555555433 1 1111222233456663 2235667999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhc
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKL 445 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l 445 (549)
++++..+++.|.++++.++ .+.|+.|++.
T Consensus 288 ~~sg~~aa~~i~~~l~~~~-----~~~L~~Y~~~ 316 (388)
T TIGR02023 288 MKSGQMAAQAIAEYLQNGD-----ATDLRHYERK 316 (388)
T ss_pred HHHHHHHHHHHHHHHhcCC-----HHHHHHHHHH
Confidence 9999999999999998653 2346889953
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=260.52 Aligned_cols=340 Identities=16% Similarity=0.139 Sum_probs=199.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
+|||||||| +|+++|..||++|++|+||||++.........|+. ..|.++|++.. .+....+...+...+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~---~~l~~~g~~~~-----~~~~~i~~~~~~~p~~ 72 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPL---CMVDEFALPRD-----IIDRRVTKMKMISPSN 72 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccH---hhHhhccCchh-----HHHhhhceeEEecCCc
Confidence 699999965 69999999999999999999986533222234654 34667787532 2221121111110011
Q ss_pred cccccc---cccc--ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE---ECCEEEEEE--cC-----C--cEEEcCE
Q 008915 190 GEIWVE---DILN--LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT---YENAAVLLL--AE-----G--KILSSHL 252 (549)
Q Consensus 190 ~~l~~~---~~l~--~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~---~~dgv~V~~--~d-----G--~~i~Arl 252 (549)
..+... ...+ ..+++..|++.|.+++.++|++++.++ ++++.. .++.+.|++ .+ | .+++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~ 151 (398)
T TIGR02028 73 IAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDA 151 (398)
T ss_pred eEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCE
Confidence 111110 0112 358999999999999999999998885 777643 234455553 22 3 3799999
Q ss_pred EEEccCCChHHHHHhcCCCCCCceeeEEeEeeeccC------CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 253 IIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFK------DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g~~------~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
||+|||.+|.++++++.+.. ..+..+....+ ++ +.+..++++.. .+.| .+|.| +||.++. .
T Consensus 152 VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~-~~~p-----~gY~W-ifP~~~~---~ 218 (398)
T TIGR02028 152 VIGADGANSRVAKEIDAGDY--SYAIAFQERIR-LPDEKMAYYDDLAEMYVGD-DVSP-----DFYGW-VFPKCDH---V 218 (398)
T ss_pred EEECCCcchHHHHHhCCCCc--ceEEEEEEEee-CChhhcccCCCeEEEEeCC-CCCC-----CceEE-EEECCCe---E
Confidence 99999999999999976432 22222222221 11 11233444432 2222 46999 8999853 3
Q ss_pred eEEEEEccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 327 TTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 327 ~~~l~~~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
.+.+.... ....++++.+.+....+. . +...+..+...+.+|.. ...++..+|++|||||||++||++|+
T Consensus 219 ~VG~g~~~----~~~~~~~~~~~l~~~~~~--~--~~~~~~~~~~~~~ip~~--~~~~~~~~~~llvGDAAg~v~P~tGe 288 (398)
T TIGR02028 219 AVGTGTVA----AKPEIKRLQSGIRARAAG--K--VAGGRIIRVEAHPIPEH--PRPRRVVGRVALVGDAAGYVTKCSGE 288 (398)
T ss_pred EEEEEeCC----CCccHHHHHHhhhhhhhh--c--cCCCcEEEEEEEecccc--ccccEECCCEEEEEcCCCCCCccccc
Confidence 33332221 122344433322211111 0 11112223334566764 23466789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFK 486 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~ 486 (549)
|++.+++++..+++.+.++++.++.. .+...|+.|+++-++.+...++ +...++ +.+.++...+..++.
T Consensus 289 GI~~A~~sg~~aa~~i~~~~~~~~~~-~~~~~l~~Y~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~ 357 (398)
T TIGR02028 289 GIYFAAKSGRMCAEAIVEESRLGGAV-TEEGDLAGYLRRWDKEYRPTYR-------VLDLLQ---RVFYRSNAGREAFVE 357 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCc-CCHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHcCCcHHHHHHHH
Confidence 99999999999999999999876521 1223457899643322222222 222222 344456666666666
Q ss_pred hcChhhh
Q 008915 487 QVGIPVL 493 (549)
Q Consensus 487 ~~g~~~~ 493 (549)
.+.-..+
T Consensus 358 ~~~~~~~ 364 (398)
T TIGR02028 358 MCADEHV 364 (398)
T ss_pred HhcCcch
Confidence 6644433
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=257.92 Aligned_cols=311 Identities=18% Similarity=0.188 Sum_probs=196.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC------CccccCCHHHHHHHHHcCCCCcccchhhhhhcc-----
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKF----- 179 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~------~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~----- 179 (549)
||+||||| +|+++|..|+++|++|+|+||++.++. .+...+++..+..|.++|++++. ........
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~--~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKI--EPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhh--hhhcCCCceEEEE
Confidence 89999975 599999999999999999999987643 25578999999999999998542 22011111
Q ss_pred -CCC---cccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 180 -NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 180 -~~~---~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
... .+.+... .. .....++.+++..|.+.|.+.+.+.| ++++.+++|+++..+++++.|++++|++++||+||
T Consensus 79 ~~~~~~~~~~~~~~-~~-~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi 156 (385)
T TIGR01988 79 SDGGSFGALHFDAD-EI-GLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLV 156 (385)
T ss_pred EeCCCCceEEechh-hc-CCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEE
Confidence 110 1111100 00 01123467899999999999998887 89999999999998888999988889899999999
Q ss_pred EccCCChHHHHHhcCCCCC---CceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 255 DAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
+|||.+|.++++++...+. ...+.+.. .....+........ +. ..+++| .||..++ ...+.+
T Consensus 157 ~adG~~S~vr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~-----~~g~~~-~~p~~~~---~~~~~~ 221 (385)
T TIGR01988 157 GADGANSKVRQLAGIPTTGWDYGQSAVVAN-VKHERPHQGTAWER-----FT-----PTGPLA-LLPLPDN---RSSLVW 221 (385)
T ss_pred EeCCCCCHHHHHcCCCccccccCCeEEEEE-EEecCCCCCEEEEE-----ec-----CCCCEE-EeECCCC---CeEEEE
Confidence 9999999999998754321 12222111 11000010000000 11 123455 6888765 333333
Q ss_pred EccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCch
Q 008915 332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (549)
Q Consensus 332 ~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~ 408 (549)
...+.... ..+.+++.+.+.+.++... .++.... ....+|.......++..+|++|+|||||.++|++|+|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~ 296 (385)
T TIGR01988 222 TLPPEEAERLLALSDEEFLAELQRAFGSRL----GAITLVG-ERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGL 296 (385)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhhc----CceEecc-CcceeechhhhhhheecCceEEEecccccCCccccchh
Confidence 33221000 0122333333333322211 1111111 12345654434446778999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 409 g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
+++++|+..|++.|.++++.+. +......|+.|++...
T Consensus 297 ~~Ai~da~~La~~L~~~~~~~~-~~~~~~~l~~y~~~r~ 334 (385)
T TIGR01988 297 NLGLRDVAALAEVLEDARRRGE-DIGSPRVLQRYERRRR 334 (385)
T ss_pred hhhHHHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHH
Confidence 9999999999999998876441 1122345689995443
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=261.53 Aligned_cols=362 Identities=16% Similarity=0.158 Sum_probs=236.4
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
...|||+||||| +|+++|+.|+++|++|+|||+.+.....+.|.++. ..+.++|+.+ .+...+....+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~---~~l~~lgl~~------~l~~~w~~~~v~~ 96 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWV---DEFEALGLLD------CLDTTWPGAVVYI 96 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHH---HHHHHCCcHH------HHHhhCCCcEEEE
Confidence 346999999965 69999999999999999999986543333444433 3566677632 2222332222323
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHH
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrq 266 (549)
...........+ ..|++..|++.|.+++.+.|++++ .++|++++.+++++.|++++|++++||+||+|||.+|++.+.
T Consensus 97 ~~~~~~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~ 174 (447)
T PLN02463 97 DDGKKKDLDRPY-GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQY 174 (447)
T ss_pred eCCCCccccCcc-eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCC
Confidence 221111111111 248999999999999988899886 579999999888999999889899999999999999987642
Q ss_pred hcCCCCCCceeeEEeEeee----ccCCCceeeeeecCCcccc--------cCCCCceeEEEEecCCCCCccceEEEEEcc
Q 008915 267 IRSGRKPDGVCLVVGSCAR----GFKDNSTSDVIYSSSSVKK--------VGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (549)
Q Consensus 267 l~~~~~~~~~~~~vg~~~~----g~~~~~~~ei~~~~~~~~~--------~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~ 334 (549)
.....+ ......+...+ .++ .+ ..++.++..... ......++.| ++|.+++ . .+ +...
T Consensus 175 -~~~~~~-g~Q~a~Gi~~ev~~~p~d-~~-~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY-~~P~~~~---~-~~-vEeT 244 (447)
T PLN02463 175 -DKPFNP-GYQVAYGILAEVDSHPFD-LD-KMLFMDWRDSHLGNNPELRARNSKLPTFLY-AMPFSSN---R-IF-LEET 244 (447)
T ss_pred -CCCCCc-cceeeeeEEeecCCCCcc-cc-cchhhhcChhhccccchhhhccCCCCceEE-EEecCCC---e-EE-EEee
Confidence 111111 11001122221 111 10 111111111100 0000145777 8999865 2 11 1111
Q ss_pred ----CCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhh
Q 008915 335 ----DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS 410 (549)
Q Consensus 335 ----~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~ 410 (549)
........+++.+.++++.++ +...++.+.+.+.||.... .+...+|+++|||||+++||.||.||..
T Consensus 245 ~l~s~~~~~~~~lk~~L~~~l~~~G------i~~~~i~~~E~~~IPmg~~--~~~~~~~~~~~G~aag~v~p~tG~~i~~ 316 (447)
T PLN02463 245 SLVARPGLPMDDIQERMVARLRHLG------IKVKSVEEDEKCVIPMGGP--LPVIPQRVLGIGGTAGMVHPSTGYMVAR 316 (447)
T ss_pred eeecCCCCCHHHHHHHHHHHHHHCC------CCcceeeeeeeeEeeCCCC--CCCCCCCEEEecchhcCcCCCccccHHH
Confidence 111111256666666665432 2223445566788998643 3445789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCC--------ChhhhHhhhhhh-------------------------------hcCcccch
Q 008915 411 LTRHLGRLSTGVYEAVRGDFV--------DSYSLSLLNPYM-------------------------------KLGDPVLR 451 (549)
Q Consensus 411 ~lrd~~~La~~i~~Al~~g~l--------~~~~l~~L~~Y~-------------------------------~l~d~~~~ 451 (549)
+++.+..+++.|.++++++.. +....+.|.+|+ +|.++.++
T Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~~~~~ 396 (447)
T PLN02463 317 TLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWH 396 (447)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCHHHcc
Confidence 999999999999999997764 233334555555 56667777
Q ss_pred hHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhcChhhhHhhHHHHH
Q 008915 452 PFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFF 501 (549)
Q Consensus 452 ~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~g~~~~~~~~~~~~ 501 (549)
.|+. +.+.+.+|+.+++..+...|+-+.+-+-..|...++.+++.+.
T Consensus 397 gfl~---~~~~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~ 443 (447)
T PLN02463 397 GFLS---SRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLI 443 (447)
T ss_pred cccc---CCCChHHHHHHHHHHHHhCCHHHHHHHHHcCChhHHHHHHHhc
Confidence 7777 7777888888888888888999999888899998888888764
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=263.56 Aligned_cols=313 Identities=20% Similarity=0.226 Sum_probs=183.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+|||+||||| +|+++|+.|+++|++|+||||.+.+... +...+++..++.|.++|+++. +..... ........+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--~~~~~~-~~~~~~~~~~ 77 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDE--ILARGS-PHEVMRIFFY 77 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHH--HHHHSE-EECEEEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhh--hhhhcc-cccceeeEee
Confidence 4899999976 5999999999999999999999876543 456788999999999998743 111100 0000000000
Q ss_pred C--------------Cccc--cccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---Cc--
Q 008915 188 G--------------KGEI--WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK-- 246 (549)
Q Consensus 188 ~--------------~~~l--~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d---G~-- 246 (549)
. ...+ ..+......+++..|++.|.+.+.+.|++++.+++++++..+++++.+.+.+ |+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~ 157 (356)
T PF01494_consen 78 DGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEE 157 (356)
T ss_dssp EETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEE
T ss_pred cccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCcee
Confidence 0 0001 1111223568999999999999999999999999999999999998776643 33
Q ss_pred EEEcCEEEEccCCChHHHHHhcCCCCCCcee---eEEeEeee-ccCCCceeeeeecCCcccccCCCCceeEEEEecCCCC
Q 008915 247 ILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC---LVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG 322 (549)
Q Consensus 247 ~i~ArlVI~ADG~~S~vrrql~~~~~~~~~~---~~vg~~~~-g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g 322 (549)
+++||+||+|||.+|.+|++++...+....+ ........ .+++......+.. .. ..+.+| .+|..++
T Consensus 158 ~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~-~~p~~~~ 228 (356)
T PF01494_consen 158 TIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIY---SP-----PSGGFA-IIPLENG 228 (356)
T ss_dssp EEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEE---EE-----TTEEEE-EEEETTT
T ss_pred EEEEeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccc---cc-----ccccee-EeeccCC
Confidence 7999999999999999999987552211111 11111111 1111100111111 01 234444 6787753
Q ss_pred CccceEEEEE--ccCCCCCc--c-cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCC
Q 008915 323 PLDRTTYMFT--YIDPQAGS--P-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDAS 397 (549)
Q Consensus 323 ~~~~~~~l~~--~~~~~~~~--~-~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA 397 (549)
. ...+++. ........ . ..+++++.+....... .. ...+... ..+|.......++..+||+||||||
T Consensus 229 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~--~~~~~~~~~~~~~~~grv~LiGDAA 300 (356)
T PF01494_consen 229 D--RSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPD-LL---ETEIDEI--SAWPIPQRVADRWVKGRVLLIGDAA 300 (356)
T ss_dssp T--EEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTC-HH---HHEEEEE--EEEEEEEEEESSSEETTEEE-GGGT
T ss_pred c--cceEEEeeecccccccccccccccccccccccccccc-cc---ccccccc--cccccccccccccccceeEEeccce
Confidence 1 2222222 22211111 1 2223332222221110 00 1111111 1233332233467779999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 398 GIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 398 ~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
|.++|++|+|+|.++.|+..|++.|..+++. ... -+.|+.|++.+
T Consensus 301 h~~~P~~GqG~n~Ai~da~~La~~L~~~~~g-~~~---~~~l~~Y~~~r 345 (356)
T PF01494_consen 301 HAMDPFSGQGINMAIEDAAALAELLAAALKG-EAS---EEALKAYEQER 345 (356)
T ss_dssp EEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT-SSH---HHHHHHHHHHH
T ss_pred eeecccccCCCCcccccHHHHHHHHHHHhcC-CcH---HHHHHHHHHHH
Confidence 9999999999999999999999999988763 212 24578999533
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=254.89 Aligned_cols=345 Identities=17% Similarity=0.170 Sum_probs=203.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCC-CcEEEEccCCCCCCC-----ccccCCHHHHHHHHHcCCCCcccchhhhhhcc---CC
Q 008915 112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTLKGRE-----QEWNISRKELLELVESGILVEDDIDEATATKF---NP 181 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G-lrVlLIEr~~~~~~~-----r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~---~~ 181 (549)
||+||||| +|+++|+.|+++| ++|+|+||.+.++.. +...++++.++.|+++|+++...-........ ..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 89999975 5999999999999 999999999876542 44678999999999999985421000000000 00
Q ss_pred ---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEcc
Q 008915 182 ---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 182 ---~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~AD 257 (549)
..+.+.. ..... ...++.+++..|.+.|.+++.+. |++++.+++|+++..++++++|++++|.+++||+||+||
T Consensus 81 ~~~~~~~~~~-~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRA-SEFGL-PALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEech-hhcCC-CccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEec
Confidence 0111110 00111 12346789999999999999884 899999999999998889999998888899999999999
Q ss_pred CCChHHHHHhcCCCCC---CceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEcc
Q 008915 258 GNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (549)
Q Consensus 258 G~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~ 334 (549)
|.+|.+++++++.... .+.+.... +....+.... .+.. +. ..+.++ .+|..++. ...+.+...
T Consensus 159 G~~S~vr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~---~~-----~~g~~~-~~p~~~~~--~~~~~~~~~ 224 (382)
T TIGR01984 159 GANSKVRELLSIPTEEHDYNQTALIAN-IRHEQPHQGC--AFER---FT-----PHGPLA-LLPLKDNY--RSSLVWCLP 224 (382)
T ss_pred CCChHHHHHcCCCCcccccCCEEEEEE-EEecCCCCCE--EEEe---eC-----CCCCeE-ECcCCCCC--CEEEEEECC
Confidence 9999999998765322 12222211 1111111000 0000 00 112233 57776541 233333321
Q ss_pred CCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 335 DPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 335 ~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
..... ....++..+.+.+.++.. +.++..... ...+|.......++..+|++|||||||.++|++|||+|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~a 299 (382)
T TIGR01984 225 SKQADTIANLPDAEFLAELQQAFGWR----LGKITQVGE-RKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLG 299 (382)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCC-ccEeecchhhhhheecCCEEEEeecccccCCccccchhhh
Confidence 10000 011122222222222110 111111111 1234444334446677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhhcChh
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIP 491 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~~g~~ 491 (549)
++|+..|++.|..++. + . ..-..|+.|++......... +.+++. +..++.+|......+|+..+.
T Consensus 300 l~Da~~La~~L~~~~~-~-~--~~~~~l~~Y~~~r~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~r~~~~~ 364 (382)
T TIGR01984 300 LRDVETLAEVLIDARI-D-L--GTYALLQEYLRRRQFDQFIT-------IGLTDG----LNRLFSNHIPLLRALRNLGLL 364 (382)
T ss_pred HHHHHHHHHHHHHhcc-C-c--cCHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHcCCchHHHHHHHHHHH
Confidence 9999999998877651 1 1 22344689995433221111 112221 134566676666666666555
Q ss_pred h
Q 008915 492 V 492 (549)
Q Consensus 492 ~ 492 (549)
.
T Consensus 365 ~ 365 (382)
T TIGR01984 365 A 365 (382)
T ss_pred H
Confidence 3
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-28 Score=262.57 Aligned_cols=308 Identities=19% Similarity=0.223 Sum_probs=195.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC--CCccccCCHHHHHHHHHcCCCCcccchhhh-hhc-cCCCcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG--REQEWNISRKELLELVESGILVEDDIDEAT-ATK-FNPNRC 184 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~--~~r~~~IS~~~l~~L~~lGl~~~~eie~~i-~~~-~~~~~i 184 (549)
++||+||||| +|+++|+.|+++|++|+||||.+.+. ..+...+++.+++.|+++|++++. .... ... ......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l--~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRF--LAQGQVAQVTGFAAT 80 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHH--HhcCCccccceeeeE
Confidence 5899999965 69999999999999999999988653 235667999999999999997532 1110 000 000111
Q ss_pred cccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHH
Q 008915 185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 185 ~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vr 264 (549)
.+.. ..+..+..+++.+.+..+.+.|.+++.+.|++++.+++++++..+++++.|++.+|++++|++||+|||.+|.+|
T Consensus 81 ~~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 81 RLDI-SDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred eccc-ccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 1110 111122234566788899999999999889999999999999999999999887888999999999999999999
Q ss_pred HHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCC-CCCccceEEEEEccCCCC-C
Q 008915 265 KQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAG-SGPLDRTTYMFTYIDPQA-G 339 (549)
Q Consensus 265 rql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~-~g~~~~~~~l~~~~~~~~-~ 339 (549)
+++++..+ +...+.++... .++........ . ..+.+. .+|.. ++ ...+++....... .
T Consensus 160 ~~lgi~~~g~~~~~~~~~~dv~---~~~~~~~~~~~-----~-----~~g~~~-~~~~~~~~---~~~~~~~~~~~~~~~ 222 (488)
T PRK06834 160 KAAGIDFPGWDPTTSYLIAEVE---MTEEPEWGVHR-----D-----ALGIHA-FGRLEDEG---PVRVMVTEKQVGATG 222 (488)
T ss_pred hhcCCCCCCCCcceEEEEEEEE---ecCCCCcceee-----C-----CCceEE-EeccCCCC---eEEEEEecCCCCCCC
Confidence 99976543 22222211111 11000000000 0 112221 24433 22 2222222211111 1
Q ss_pred cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHH
Q 008915 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419 (549)
Q Consensus 340 ~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La 419 (549)
..+.+++.+.+.+.++.- .......+. ..++.....+.++..+||+|+|||||.++|+.|||+|++++|+..|+
T Consensus 223 ~~~~~~~~~~l~~~~g~~--~~~~~~~~~----~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLa 296 (488)
T PRK06834 223 EPTLDDLREALIAVYGTD--YGIHSPTWI----SRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLG 296 (488)
T ss_pred CCCHHHHHHHHHHhhCCC--CccccceeE----EeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHH
Confidence 224455544444444311 111111111 22344334456788899999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 420 TGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 420 ~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
..|...++.. + .-..|..|++.+.
T Consensus 297 wkLa~vl~g~--~--~~~lLd~Ye~eRr 320 (488)
T PRK06834 297 WKLAQVVKGT--S--PESLLDTYHAERH 320 (488)
T ss_pred HHHHHHHcCC--C--cHHHHHHHHHHHH
Confidence 9888887642 1 2356789995433
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=254.58 Aligned_cols=348 Identities=15% Similarity=0.179 Sum_probs=204.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc-
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF- 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f- 186 (549)
.+||+||||| +|+++|+.|+++|++|+|+||.+.++.. +...|++..++.|+++|+++.. ........ ..+.+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~--~~~~~~~~--~~~~~~ 80 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDV--FAAGGLRR--DAMRLY 80 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHH--Hhcccccc--cceEEe
Confidence 6999999975 5999999999999999999999876532 3345888999999999998542 11000000 00111
Q ss_pred cCCcc---cccc--cccc--ceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEE--EEEEcCCcEEEcCEEEEc
Q 008915 187 EGKGE---IWVE--DILN--LGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDA 256 (549)
Q Consensus 187 ~~~~~---l~~~--~~l~--~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv--~V~~~dG~~i~ArlVI~A 256 (549)
..+.. +... ...+ +.+++..|.+.|.+++.+ .|++++.+++++++..+++++ .|++++|++++|++||+|
T Consensus 81 ~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgA 160 (388)
T PRK07045 81 HDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGA 160 (388)
T ss_pred cCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEEC
Confidence 11110 0000 1112 357888999999999865 478999999999999877764 577778889999999999
Q ss_pred cCCChHHHHHh-cCCC---CCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEE
Q 008915 257 MGNFSPVVKQI-RSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (549)
Q Consensus 257 DG~~S~vrrql-~~~~---~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~ 332 (549)
||.+|.+|+++ +.+. ++...+.. +.....-.......+++. ...+++| .||..++ ...+.+.
T Consensus 161 DG~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~p~~~~---~~~~~~~ 226 (388)
T PRK07045 161 DGARSMIRDDVLRMPAERVPYATPMAF-GTIALTDSVRECNRLYVD---------SNQGLAY-FYPIGDQ---ATRLVVS 226 (388)
T ss_pred CCCChHHHHHhhCCCcccCCCCcceeE-EEEeccCCccccceEEEc---------CCCceEE-EEEcCCC---cEEEEEE
Confidence 99999999975 3332 12222221 221110000011111111 1245666 6887654 2333333
Q ss_pred ccCCCCC---c-ccHHHHHHHHHHhC-cccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 008915 333 YIDPQAG---S-PKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (549)
Q Consensus 333 ~~~~~~~---~-~~L~~l~~~~~~~l-p~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G 407 (549)
....... . ...+++.+.+.+.+ +..... ++.... ...+..+|.......++..+|++|||||||.++|++|||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG 304 (388)
T PRK07045 227 FPADEMQGYLADTTRTKLLARLNEFVGDESADA-MAAIGA-GTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQG 304 (388)
T ss_pred eccccchhccCCCCHHHHHHHHhhhcCccchHH-HhccCc-ccccceeecCccccccccCCCEEEEEccccccCCCcccc
Confidence 2221110 0 11222222222222 111111 111110 111223444433345677899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhh
Q 008915 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 487 (549)
Q Consensus 408 ~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~ 487 (549)
+|.+++|+..|++.|..++..+. ..-+.|+.|++.+....... +.+++.. ...+.+.......++.
T Consensus 305 ~n~ai~Da~~La~~L~~~~~~~~---~~~~~L~~Ye~~R~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~ 370 (388)
T PRK07045 305 MNLAIEDAGELGACLDLHLSGQI---ALADALERFERIRRPVNEAV-------ISYGHAL----ATTYHDRAALVANFRS 370 (388)
T ss_pred HHHHHHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHhhhHHHHH-------HhhhHHH----hhhcccchhHHHHHHh
Confidence 99999999999999987764321 22346789996544322111 1222222 3456677777777665
Q ss_pred cChh
Q 008915 488 VGIP 491 (549)
Q Consensus 488 ~g~~ 491 (549)
....
T Consensus 371 ~~~~ 374 (388)
T PRK07045 371 QLQT 374 (388)
T ss_pred hhhc
Confidence 5443
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=263.70 Aligned_cols=309 Identities=19% Similarity=0.212 Sum_probs=195.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhh--ccC--CCc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATAT--KFN--PNR 183 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~--~~~--~~~ 183 (549)
+|||+||||| +|+++|+.|+++|++|+||||++.+.. .+...+++.+++.|+++|++++..-...... .+. ...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 5899999965 699999999999999999999987643 4667899999999999999753210000000 010 001
Q ss_pred ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc--CC-cEEEcCEEEEccCCC
Q 008915 184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG-KILSSHLIIDAMGNF 260 (549)
Q Consensus 184 i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--dG-~~i~ArlVI~ADG~~ 260 (549)
+.|. ....+....+.+++..+++.|.+++.+.|++++.+++++++..++++++|++. +| ++++||+||+|||.+
T Consensus 82 ~~~~---~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 82 LDFS---ALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred CCcc---cCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 1111 01111223456889999999999998889999999999999999999888775 45 479999999999999
Q ss_pred hHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCC
Q 008915 261 SPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 337 (549)
Q Consensus 261 S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~ 337 (549)
|.+|+++++..+ +...+..........+....... +. ..+.+| .+|..++ ...+.+...+..
T Consensus 159 S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~g~~~-~~P~~~~---~~~~~~~~~~~~ 223 (493)
T PRK08244 159 SIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSL------CT-----REGGVM-IVPLSGG---IYRVLIIDPERP 223 (493)
T ss_pred hHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEE------Ee-----CCceEE-EEECCCC---eEEEEEEcCCcc
Confidence 999999976532 11222111111111111111111 11 124455 6888765 233333221111
Q ss_pred --C-C-cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHH
Q 008915 338 --A-G-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTR 413 (549)
Q Consensus 338 --~-~-~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lr 413 (549)
. . ..+.+++.+.+.+.++..-. .....+. ..++.......++..+||+|+|||||.++|++|||+|++++
T Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~----~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~ 297 (493)
T PRK08244 224 QVPKDEPVTLEELKTSLIRICGTDFG--LNDPVWM----SRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQ 297 (493)
T ss_pred cccCCCCCCHHHHHHHHHHhhCCCCC--cCCeeEE----EecccceeeHhhhccCcEEEeecceeccCCccccccccchh
Confidence 1 1 12455555555444432111 1111111 12333333344677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 414 HLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 414 d~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
|+..|+..|..+++. . + ....|+.|++.+
T Consensus 298 DA~~La~~La~~l~g-~-~--~~~lL~~Ye~eR 326 (493)
T PRK08244 298 DAMNLGWKLAAAIKG-W-A--PDWLLDSYHAER 326 (493)
T ss_pred hHHHHHHHHHHHHcC-C-C--CchhhhhhHHHH
Confidence 999999999988853 2 1 224578999543
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=259.37 Aligned_cols=321 Identities=17% Similarity=0.180 Sum_probs=195.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCc--cccCCHHHHHHHHHcCCCCcccchhhhhhc---c--C
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATK---F--N 180 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r--~~~IS~~~l~~L~~lGl~~~~eie~~i~~~---~--~ 180 (549)
.+||||||||| +|+++|+.||++|++|+||||.++++.+. ...++...++.+.. ++.....++..+..+ + .
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEEEeC
Confidence 46999999965 69999999999999999999999887542 12344444443321 332211222222111 0 0
Q ss_pred C--CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 181 P--NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 181 ~--~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
. ..+.|... ....+..-++.++|..|+++|.+++++.|++++.+++|+++..+++++.....++.+++|++||+|||
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG 161 (429)
T PRK10015 83 ESAVTLDFHRE-QPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG 161 (429)
T ss_pred CCceEeecccC-CCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccC
Confidence 0 11112111 11111122578999999999999999999999999999999887777653333556899999999999
Q ss_pred CChHHHHHhcCCCC--CCceeeEEeEeeeccCCCceeeee----------ecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 259 NFSPVVKQIRSGRK--PDGVCLVVGSCARGFKDNSTSDVI----------YSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 259 ~~S~vrrql~~~~~--~~~~~~~vg~~~~g~~~~~~~ei~----------~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
.+|.++++++.... +......+.... ..+.....+.+ ...+... ++..++.| .||..+. .
T Consensus 162 ~~s~v~~~lg~~~~~~~~~~~~gvk~~~-~~~~~~i~~~~~~~~~~g~~w~~~g~~~---~g~~g~G~-~~~~~d~---v 233 (429)
T PRK10015 162 VNSMLGRSLGMVPASDPHHYAVGVKEVI-GLTPEQINDRFNITGEEGAAWLFAGSPS---DGLMGGGF-LYTNKDS---I 233 (429)
T ss_pred cchhhhcccCCCcCCCcCeEEEEEEEEE-eCCHHHhhHhhcCCCCCCeEEEecCccC---CCCCCceE-EEEcCCc---E
Confidence 99999998876432 222222221111 12111000000 0000000 00112333 4454432 3
Q ss_pred eEEEEEcc-CCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCC--
Q 008915 327 TTYMFTYI-DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSP-- 402 (549)
Q Consensus 327 ~~~l~~~~-~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~P-- 402 (549)
...+.... +......++.+++++|. ..|.++.. +...+......+.+|.... ...+.+.+|+++|||||+++||
T Consensus 234 ~vGv~~~~~~~~~~~~~~~~~l~~~~-~~p~~~~~-~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~ 311 (429)
T PRK10015 234 SLGLVCGLGDIAHAQKSVPQMLEDFK-QHPAIRPL-ISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLG 311 (429)
T ss_pred EEEEEEehhhhccCCCCHHHHHHHHh-hChHHHHH-hcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccC
Confidence 33332221 11112347788888874 56655443 2333334444456776532 2236788999999999999995
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 403 ltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
++++|++.++.+...+|+.+.+|++.++++...| +.|++
T Consensus 312 ~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l---~~Y~~ 350 (429)
T PRK10015 312 FTVRGMDLAIASAQAAATTVIAAKERADFSASSL---AQYKR 350 (429)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCccccH---HHHHH
Confidence 5999999999999999999999999887776665 68885
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=254.08 Aligned_cols=344 Identities=19% Similarity=0.161 Sum_probs=206.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC------CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKFNPN 182 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~------~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~ 182 (549)
.|||+||||| +|+++|+.|++.|++|+|+||.+.+.. .+...+++.+++.|..+|++++. +..... ...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~--~~~~~~--~~~ 80 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQAL--DAARLA--PVY 80 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhh--hhhcCC--cce
Confidence 6899999976 599999999999999999999987643 13346889999999999998642 110000 001
Q ss_pred cccccCC--ccccc------cccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEE
Q 008915 183 RCGFEGK--GEIWV------EDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (549)
Q Consensus 183 ~i~f~~~--~~l~~------~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlV 253 (549)
.+.+.+. ..+.. .....+.+++..|++.|.+++++.| ++++ +++++++..+++++.|++++|.+++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~v 159 (388)
T PRK07608 81 DMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLV 159 (388)
T ss_pred EEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEE
Confidence 1111110 00110 0112456889999999999998887 7888 99999998888899999888888999999
Q ss_pred EEccCCChHHHHHhcCCCCC---CceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEE
Q 008915 254 IDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l 330 (549)
|+|||.+|.+++.++..... .+.+.++..... ...... ...+ +. ..+++| .+|..++ .....
T Consensus 160 I~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~----~~-----~~~~~~-~~p~~~~---~~~~~ 224 (388)
T PRK07608 160 VGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAE-RPHRGT-AYQW----FR-----DDGILA-LLPLPDG---HVSMV 224 (388)
T ss_pred EEeCCCCchHHHhcCCCccccccCCEEEEEEEEec-CCCCCE-EEEE----ec-----CCCCEE-EeECCCC---CeEEE
Confidence 99999999999998765322 222222111100 000000 0000 01 124555 6788765 23222
Q ss_pred EEccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 008915 331 FTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (549)
Q Consensus 331 ~~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G 407 (549)
+........ ..+.+++.+.+....+.. +..+....... .+|........+..+|+++||||||.++|++|||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG 299 (388)
T PRK07608 225 WSARTAHADELLALSPEALAARVERASGGR----LGRLECVTPAA-GFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQG 299 (388)
T ss_pred EECCHHHHHHHHCCCHHHHHHHHHHHHHHh----cCCceecCCcc-eeecchhhhhhhhcCceEEEeccccccCCccccc
Confidence 332110000 011122222222222110 11122111111 2454433445677899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHhh
Q 008915 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 487 (549)
Q Consensus 408 ~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~~ 487 (549)
+|.+++|+..|++.|..+...++. ...+.|+.|++...+....+. .+++. +..++.++..+...+|+
T Consensus 300 ~n~ai~da~~La~~L~~~~~~~~~--~~~~~l~~Ye~~R~~~~~~~~-------~~~~~----~~~~~~~~~~~~~~~r~ 366 (388)
T PRK07608 300 MNLGLRDVAALADVLAGREPFRDL--GDLRLLRRYERARREDILALQ-------VATDG----LQRLFALPGPLARWLRN 366 (388)
T ss_pred cchhHHHHHHHHHHHHHhhccCCC--ccHHHHHHHHHHHHHHHHHHH-------HHHHH----HHHHHcCCchHHHHHHH
Confidence 999999999999998776432222 223567899964432222211 12221 23466677666666676
Q ss_pred cChh
Q 008915 488 VGIP 491 (549)
Q Consensus 488 ~g~~ 491 (549)
..+.
T Consensus 367 ~~~~ 370 (388)
T PRK07608 367 AGMA 370 (388)
T ss_pred HHHH
Confidence 6554
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=237.83 Aligned_cols=286 Identities=21% Similarity=0.222 Sum_probs=185.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
|||+||||| +|+++|+.|+++|++|+||||...++.. ....+++..++.|...+.. ... ..+...+....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-----~~~~~~~~~~~ 72 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL---IVN-----LVRGARFFSPN 72 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh---hhh-----heeeEEEEcCC
Confidence 799999976 5999999999999999999999876542 3345666665555333211 010 01100110010
Q ss_pred Ccc--ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC-CcEEEcCEEEEccCCChHHHH
Q 008915 189 KGE--IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPVVK 265 (549)
Q Consensus 189 ~~~--l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d-G~~i~ArlVI~ADG~~S~vrr 265 (549)
+.. ...+....+.+++..|.+.|.+++.+.|++++.+++++++..+++++.+.+.+ +.+++||+||+|||.+|.+++
T Consensus 73 ~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~ 152 (295)
T TIGR02032 73 GDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAK 152 (295)
T ss_pred CcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHH
Confidence 111 11112234568999999999999998999999999999999988888877654 458999999999999999999
Q ss_pred HhcCCCCCCceeeEEeEeeecc--C-CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCccc
Q 008915 266 QIRSGRKPDGVCLVVGSCARGF--K-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPK 342 (549)
Q Consensus 266 ql~~~~~~~~~~~~vg~~~~g~--~-~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~~ 342 (549)
+++....+...+.......... + ..+...++..... . ..++.| .+|..++ .....+..... ....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~-~~P~~~~---~~~v~~~~~~~-~~~~~ 221 (295)
T TIGR02032 153 KLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGI-S-----PGGYGW-VFPKGDG---TANVGVGSRSA-EEGED 221 (295)
T ss_pred hcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCc-C-----CCceEE-EEeCCCC---eEEEeeeeccC-CCCCC
Confidence 8876543333332221111110 0 1122233322211 1 246788 7998765 22222222221 12347
Q ss_pred HHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHH
Q 008915 343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTG 421 (549)
Q Consensus 343 L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~ 421 (549)
+++.+++|....|.+. +.++.+...+.+|... ...+...+|++++|||||++||++|+|++++++|+..+++.
T Consensus 222 ~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~-~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~ 294 (295)
T TIGR02032 222 LKKYLKDFLARRPELK-----DAETVEVIGAPIPIGR-PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEV 294 (295)
T ss_pred HHHHHHHHHHhCcccc-----cCcEEeeeceeeccCC-CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhh
Confidence 8899999998887643 3333333334455532 34467889999999999999999999999999998887765
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=250.77 Aligned_cols=292 Identities=16% Similarity=0.178 Sum_probs=184.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
..||||||||| +|+++|+.|+++|++|+|||+..... ..|.++.. .+.++|+. ..+...+....+.+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~--~n~GvW~~---~l~~lgl~------~~i~~~w~~~~v~~~ 175 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWED---EFKDLGLE------DCIEHVWRDTIVYLD 175 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC--Cccccchh---HHHhcCcH------HHHHhhcCCcEEEec
Confidence 36999999965 69999999999999999999864322 23455543 35566652 223333333333333
Q ss_pred CCccccccccccc-eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEE-EEcCCcEEEcCEEEEccCCChHHHH
Q 008915 188 GKGEIWVEDILNL-GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEGKILSSHLIIDAMGNFSPVVK 265 (549)
Q Consensus 188 ~~~~l~~~~~l~~-~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V-~~~dG~~i~ArlVI~ADG~~S~vrr 265 (549)
....+.... .+ .|++..|++.|.+++.+.|+++ .+++|+++..+++++.+ .+.+|.+++|++||+|||.+|...-
T Consensus 176 ~~~~~~~~~--~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~ 252 (529)
T PLN02697 176 DDKPIMIGR--AYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLL 252 (529)
T ss_pred CCceeeccC--cccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhh
Confidence 222222211 23 4899999999999998889987 67899999887777654 4567889999999999999994211
Q ss_pred HhcCC-C-CCCceeeEEeEeee--ccC-CCceeeeeecCCcc--c---ccCCCCceeEEEEecCCCCCccceEEE-EEcc
Q 008915 266 QIRSG-R-KPDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSV--K---KVGDSEVQLFWEAFPAGSGPLDRTTYM-FTYI 334 (549)
Q Consensus 266 ql~~~-~-~~~~~~~~vg~~~~--g~~-~~~~~ei~~~~~~~--~---~~~~~~~~~~W~~fP~~~g~~~~~~~l-~~~~ 334 (549)
+.... . ...+.+ .|...+ ..+ +.+. .++.++... . ........++| ++|.+++ ..++ .++.
T Consensus 253 ~~~~~~~~~~~Q~a--~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlY-vlP~~~~----~~~VE~T~l 324 (529)
T PLN02697 253 QYEVGGPRVCVQTA--YGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLY-AMPMSST----RVFFEETCL 324 (529)
T ss_pred ccccCCCCcccEEE--EEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEE-EeecCCC----eEEEEEeee
Confidence 11111 1 111222 222221 111 2222 233332211 0 01112356888 8999865 2222 2221
Q ss_pred -CCC-CCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHH
Q 008915 335 -DPQ-AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT 412 (549)
Q Consensus 335 -~~~-~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~l 412 (549)
... .....+++.+.+|++..+ + ...++.+.+.|.+|..... +...+++++|||||+++||.||.||..++
T Consensus 325 ~~~~~l~~~~l~~~L~~~l~~~G-i-----~~~~i~~~E~g~iPm~g~~--~~~~~~vl~vG~AAG~vhPsTGy~v~~~l 396 (529)
T PLN02697 325 ASKDAMPFDLLKKRLMSRLETMG-I-----RILKTYEEEWSYIPVGGSL--PNTEQKNLAFGAAASMVHPATGYSVVRSL 396 (529)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC-C-----CcceEEEEEeeeecCCCCC--cccCCCeeEeehhhcCCCCchhhhHHHHH
Confidence 111 112356666666766542 2 2334566778999996432 22378999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 008915 413 RHLGRLSTGVYEAVRGDF 430 (549)
Q Consensus 413 rd~~~La~~i~~Al~~g~ 430 (549)
+.+..+|+.|.++++.++
T Consensus 397 ~~A~~~A~~ia~~l~~~~ 414 (529)
T PLN02697 397 SEAPKYASVIARILKNVS 414 (529)
T ss_pred HhHHHHHHHHHHHhhCCc
Confidence 999999999999998775
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-27 Score=254.10 Aligned_cols=310 Identities=15% Similarity=0.136 Sum_probs=196.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhh---hccCCCc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNPNR 183 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~---~~~~~~~ 183 (549)
..+||+||||| +|+++|+.|+++|++|+||||.+.+.. .++..+++.+++.|+.+|++++..-..... ..+..+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~ 83 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGK 83 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCc
Confidence 36999999965 699999999999999999999986643 355568899999999999875321000000 0011111
Q ss_pred -ccccC--Ccccc-ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 184 -CGFEG--KGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 184 -i~f~~--~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
+.... ...+. ......+.+.+..+++.|.+++.+.|++++.+++|+++.++++++++.+.+|++++||+||+|||.
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCC
Confidence 10000 00000 011112457788899999999999999999999999999999999888878889999999999999
Q ss_pred ChHHHHHhcCCCCCC---ceeeEEeE-eeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccC
Q 008915 260 FSPVVKQIRSGRKPD---GVCLVVGS-CARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID 335 (549)
Q Consensus 260 ~S~vrrql~~~~~~~---~~~~~vg~-~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~ 335 (549)
+|.+|++++++.+.. .....+-. ....+++... .+.+. . + ...++| +|..++ ...++....
T Consensus 164 ~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~-~~~~~-~---~----~g~~~~--~p~~~~---~~r~~~~~~- 228 (487)
T PRK07190 164 RSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPE-IIVFQ-A---E----TSDVAW--IPREGE---IDRFYVRMD- 228 (487)
T ss_pred CHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcc-eEEEE-c---C----CCCEEE--EECCCC---EEEEEEEcC-
Confidence 999999998764321 11111111 1111221000 01110 0 1 234555 566543 222222221
Q ss_pred CCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCcc-CCcEEEeCCCCCCCCCCCCCchhhHHHH
Q 008915 336 PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRH 414 (549)
Q Consensus 336 ~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~-~~rvlLVGDAA~~v~Pltg~G~g~~lrd 414 (549)
......+++.+...+.+... ...+.+..+. ..+|.......++. .+||+|+|||||.++|..|||+|.+++|
T Consensus 229 --~~~~t~~~~~~~l~~~~~~~-~~~~~~~~w~----s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqD 301 (487)
T PRK07190 229 --TKDFTLEQAIAKINHAMQPH-RLGFKEIVWF----SQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLAD 301 (487)
T ss_pred --CCCCCHHHHHHHHHHhcCCC-CCceEEEEEE----EEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHH
Confidence 11224455555444433111 1112222221 34566555566775 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 415 LGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 415 ~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
+..|+..|...++.. + ....|..|+.
T Consensus 302 A~nL~wkLa~v~~g~--a--~~~lLdtY~~ 327 (487)
T PRK07190 302 AFNLIWKLNMVIHHG--A--SPELLQSYEA 327 (487)
T ss_pred HHHHHHHHHHHHcCC--C--cHHHHHHHHH
Confidence 999999998877643 2 2355789994
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=245.32 Aligned_cols=349 Identities=16% Similarity=0.166 Sum_probs=203.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhC---CCcEEEEccCCCCC------CCccccCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK---GLRVAIVERNTLKG------REQEWNISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~---GlrVlLIEr~~~~~------~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
.|||+||||| +|+++|+.|+++ |++|+|+||..... ..+...+++..+..|+++|+++...-........
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 6999999965 699999999998 99999999963221 1245678888999999999986421111000000
Q ss_pred ---CCCc---ccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCE
Q 008915 180 ---NPNR---CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (549)
Q Consensus 180 ---~~~~---i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~Arl 252 (549)
.... ..+.. ..... ...++.+++..|++.|.+.+.+. |++++.+++++++..+++++.|++++|.+++|++
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (395)
T PRK05732 83 HVSDRGHAGFVRLDA-EDYGV-PALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRL 160 (395)
T ss_pred EEecCCCCceEEeeh-hhcCC-CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence 0000 11110 01111 12246688889999999988764 6899999999999888889999988888899999
Q ss_pred EEEccCCChHHHHHhcCCCCCC---ceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 253 IIDAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~~~~---~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
||+|||.+|.++++++...... ..+.. ..+.. ........+.. +. ..+.++ .+|.+++ ...+
T Consensus 161 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~---~~-----~~g~~~-~~p~~~g---~~~~ 225 (395)
T PRK05732 161 LVAADGSHSALREALGIDWQQHPYEQVAVI-ANVTT--SEAHQGRAFER---FT-----EHGPLA-LLPMSDG---RCSL 225 (395)
T ss_pred EEEecCCChhhHHhhCCCccceecCCEEEE-EEEEe--cCCCCCEEEEe---ec-----CCCCEE-EeECCCC---CeEE
Confidence 9999999999999987653221 12211 11110 00000111100 00 012333 5777665 2322
Q ss_pred EEEccCCCC---CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 330 l~~~~~~~~---~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
.+....... ...+.++..+.+...++. . +..+..... ...+|.......++..+|++|+|||||.++|++||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~-~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~Gq 300 (395)
T PRK05732 226 VWCHPLEDAEEVLSWSDAQFLAELQQAFGW-R---LGRITHAGK-RSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQ 300 (395)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHHh-h---hcceeecCC-cceecccccchhhhccCcEEEEeecccccCCcccc
Confidence 222211000 001122222222222111 0 011100000 11234433334456789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHHHHh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPSIFK 486 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~~~~ 486 (549)
|+|.+++|+..|++.|..+++.+. +....+.|+.|++...... + ..+.+++.+ ..++.++......+|
T Consensus 301 G~~~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~Y~~~R~~~~----~---~~~~~~~~~----~~~~~~~~~~~~~~r 368 (395)
T PRK05732 301 GFNLGLRDVMSLAETLTQALARGE-DIGDYAVLQRYQQRRQQDR----E---ATIGFTDGL----VRLFANRWAPLVVGR 368 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHH----H---HHHHHHHHH----HHHHcCCChHHHHHH
Confidence 999999999999999988876532 1122245789995443222 1 112222222 345667766666666
Q ss_pred hcChhh
Q 008915 487 QVGIPV 492 (549)
Q Consensus 487 ~~g~~~ 492 (549)
...+..
T Consensus 369 ~~~~~~ 374 (395)
T PRK05732 369 NLGLMA 374 (395)
T ss_pred HHHHHH
Confidence 665543
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=257.54 Aligned_cols=310 Identities=17% Similarity=0.137 Sum_probs=186.3
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-CCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.++||+||||| .|+++|+.|+++|++|+||||.+.+. ..+.+.+++.+++.|+++|++++. ... ......+.|
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l--~~~---~~~~~~~~~ 83 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEV--LPH---TTPNHGMRF 83 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHH--Hhh---cccCCceEE
Confidence 36999999965 59999999999999999999998654 346778999999999999997531 111 010001111
Q ss_pred c--CCccc-ccc--------ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEc--CC--cEEEc
Q 008915 187 E--GKGEI-WVE--------DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EG--KILSS 250 (549)
Q Consensus 187 ~--~~~~l-~~~--------~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~--dG--~~i~A 250 (549)
. .+..+ ..+ ....+.+++..+.+.|.+.+.+. |++++.+++|+++++++++++|+++ +| ++++|
T Consensus 84 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~a 163 (538)
T PRK06183 84 LDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRA 163 (538)
T ss_pred EcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEE
Confidence 1 01000 000 01124577888999999998775 8899999999999999999998886 46 47999
Q ss_pred CEEEEccCCChHHHHHhcCCCCC---CceeeEEeEeeeccCC-CceeeeeecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 251 HLIIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 251 rlVI~ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~~-~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
|+||+|||.+|.+|+++++.... .....++......... ......++ .+ +..++ .+|..++ .
T Consensus 164 d~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~--~~p~~~~---~ 229 (538)
T PRK06183 164 RYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYC-----DP----ARPYT--SVRLPHG---R 229 (538)
T ss_pred EEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEE-----CC----CCCEE--EEEcCCC---e
Confidence 99999999999999999764321 1111111110000000 00000100 00 12222 3555443 2
Q ss_pred eEEEEEccCC-CCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCC
Q 008915 327 TTYMFTYIDP-QAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF 405 (549)
Q Consensus 327 ~~~l~~~~~~-~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg 405 (549)
..+.+..... ......-.+.+.+++..... .....++.+.. .+........++..+||+|+|||||.++|+.|
T Consensus 230 ~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~--~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~G 303 (538)
T PRK06183 230 RRWEFMLLPGETEEQLASPENVWRLLAPWGP----TPDDAELIRHA--VYTFHARVADRWRSGRVLLAGDAAHLMPPFAG 303 (538)
T ss_pred EEEEEEeCCCCChhhcCCHHHHHHHHHhhCC----CCcceEEEEEE--eeeEccEEhhhhccCCEEEEechhhcCCCccc
Confidence 2233332211 11111111222233322210 01122222211 12221122346778999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 406 ~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
||+|++++|+..|+..|...++... .-..|..|++.+.
T Consensus 304 QG~n~gi~DA~~La~kLa~~~~g~~----~~~~L~~Ye~eR~ 341 (538)
T PRK06183 304 QGMNSGIRDAANLAWKLAAVLRGRA----GDALLDTYEQERR 341 (538)
T ss_pred cchhhhHHHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHH
Confidence 9999999999999998886664321 2345789995443
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=254.80 Aligned_cols=313 Identities=15% Similarity=0.118 Sum_probs=187.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhh---hccCC-Cc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNP-NR 183 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~---~~~~~-~~ 183 (549)
++||+||||| +|+++|+.|+++|++|+||||++.+.. .+...|++.+++.|+++|++++..-..... ..+.. ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 5899999965 699999999999999999999986643 356678999999999999975311000000 00110 10
Q ss_pred c---cccCC-c-cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE---cCCcEEEcCEEEE
Q 008915 184 C---GFEGK-G-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLIID 255 (549)
Q Consensus 184 i---~f~~~-~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~---~dG~~i~ArlVI~ 255 (549)
+ .+... . ....+....+.+++..+++.|.+++.+.|++++.++++++++++++++++++ .++++++||+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVg 162 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVG 162 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEE
Confidence 0 00000 0 0011112235678889999999999988999999999999999999988877 4566899999999
Q ss_pred ccCCChHHHHHhcCCCCC---Cc-eeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 256 AMGNFSPVVKQIRSGRKP---DG-VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 256 ADG~~S~vrrql~~~~~~---~~-~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
|||.+|.+|+++++.... .. .+.++.......+. .....+.. . ..+.+ ..+|..++ ....+.+
T Consensus 163 ADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~-~~~~~-~~~p~~~~--~~~~~~~ 229 (502)
T PRK06184 163 ADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDR-DAWHQWPD--------G-DMGMI-ALCPLPGT--DLFQIQA 229 (502)
T ss_pred CCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCC-cceEEccC--------C-CCcEE-EEEEccCC--CeEEEEE
Confidence 999999999999865431 11 22211111111110 11111110 0 11222 24565433 1222222
Q ss_pred EccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 332 TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 332 ~~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
............+++.+.+....+.. ...+....+ ...++.....+.++..+||+|+|||||.++|+.|||+|.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~----~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~g 304 (502)
T PRK06184 230 PLPPGGEPDLSADGLTALLAERTGRT-DIRLHSVTW----ASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTS 304 (502)
T ss_pred EcCCCccCCCCHHHHHHHHHHhcCCC-Ccceeeeee----eeccccceeEhhhhcCCcEEEeccccccCCCcccccccch
Confidence 22211111112222222222222211 111111111 1122322223346778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhc
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKL 445 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l 445 (549)
++|+..|+..|...++. . . ...|..|++.
T Consensus 305 i~DA~~LawkLa~vl~g-~-~---~~lL~~Ye~e 333 (502)
T PRK06184 305 VQDAYNLGWKLAAVLAG-A-P---EALLDTYEEE 333 (502)
T ss_pred HHHHHHHHHHHHHHHcC-C-C---HHHHHHHHHH
Confidence 99999999998887764 2 1 2357899943
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=252.03 Aligned_cols=320 Identities=15% Similarity=0.192 Sum_probs=191.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCc--cccCCHHHHHHHHHcCCCCcccchhhhhhc---c--C
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATK---F--N 180 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r--~~~IS~~~l~~L~~lGl~~~~eie~~i~~~---~--~ 180 (549)
++||||||||| +|+++|+.||++|++|+||||..+++.+. ...++...++.+.. .++....++..+..+ + .
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP-GFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhh-hhhhcCcccceeeeeeEEEEcC
Confidence 47999999965 69999999999999999999999887542 12344444433311 111111122221111 0 0
Q ss_pred CCcc--cccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 181 PNRC--GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 181 ~~~i--~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
...+ .+... ....+....+.++|..|+++|.+++.+.|++++++++|+++..+++.+++...+|.+++|++||+|||
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G 161 (428)
T PRK10157 83 KSAMTMDYCNG-DETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADG 161 (428)
T ss_pred CCceeeccccc-cccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeC
Confidence 0111 11111 01111223577899999999999999999999999999999887777654445677899999999999
Q ss_pred CChHHHHHhcCCCC--CCceeeEEeEeeec----cC------CCc-eeeeeecCCcccccCCCCceeEEEEecCCCCCcc
Q 008915 259 NFSPVVKQIRSGRK--PDGVCLVVGSCARG----FK------DNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLD 325 (549)
Q Consensus 259 ~~S~vrrql~~~~~--~~~~~~~vg~~~~g----~~------~~~-~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~ 325 (549)
.+|.++++++...+ +..++..+....+. .+ +.. ...++... +.. + -.++.| .|+..+.
T Consensus 162 ~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~---g-~~ggG~-~~~~~~~--- 232 (428)
T PRK10157 162 VNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGS-PTD---G-LMGGGF-LYTNENT--- 232 (428)
T ss_pred CCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEEC-CCC---C-CcCcee-EEEcCCe---
Confidence 99999999876532 33333222111110 00 000 01111110 100 0 112234 4565432
Q ss_pred ceEEEEE-ccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCCC
Q 008915 326 RTTYMFT-YIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSPV 403 (549)
Q Consensus 326 ~~~~l~~-~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~Pl 403 (549)
....+.. .........+..++++.| ..+|.++.. +...+........+|.... ...+.+.+++++|||||+++||+
T Consensus 233 ~svG~~~~~~~~~~~~~~~~~~l~~~-~~~p~v~~~-~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~ 310 (428)
T PRK10157 233 LSLGLVCGLHHLHDAKKSVPQMLEDF-KQHPAVAPL-IAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNL 310 (428)
T ss_pred EEEEEEEehHHhcccCCCHHHHHHHH-HhCchHHHH-hCCCeEHHHHhhHhhcCCcccCCceecCCeEEEeccccccccc
Confidence 3333322 222112234667777765 456655432 2222221122234554322 22356789999999999999995
Q ss_pred --CCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 404 --SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 404 --tg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
+|.|++.++.....+|+.+.++++.++.++..| +.|++
T Consensus 311 g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l---~~Y~~ 350 (428)
T PRK10157 311 GFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKL---AEYRQ 350 (428)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhH---HHHHH
Confidence 899999999999999999999999887766555 68885
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=243.06 Aligned_cols=313 Identities=17% Similarity=0.182 Sum_probs=181.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC---CCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~---~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
++||+||||| +|+++|+.|+++|++|+|+||.+.+ ...+...++++.++.|+++|++++. ... ........+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l--~~~-~~~~~~~~~~ 78 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERM--DRE-GLVHDGIELR 78 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHH--Hhc-CCccCcEEEE
Confidence 5899999965 5999999999999999999999853 2223445889999999999997542 111 0000111111
Q ss_pred ccCC-ccccccc----cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-ECCEEEEEEc-CCc--EEEcCEEEEc
Q 008915 186 FEGK-GEIWVED----ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLIIDA 256 (549)
Q Consensus 186 f~~~-~~l~~~~----~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V~~~-dG~--~i~ArlVI~A 256 (549)
+.+. ..+..+. .....+.+..+.+.|.+++.+.|++++.+++++++.. +++++.|++. +|+ +++||+||+|
T Consensus 79 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgA 158 (392)
T PRK08243 79 FDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGC 158 (392)
T ss_pred ECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEEC
Confidence 1110 0011100 0112346677888888888888999999999999976 6677777773 664 7999999999
Q ss_pred cCCChHHHHHhcCCCCCC--ceee--EEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEE
Q 008915 257 MGNFSPVVKQIRSGRKPD--GVCL--VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (549)
Q Consensus 257 DG~~S~vrrql~~~~~~~--~~~~--~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~ 332 (549)
||.+|.+|++++...... .... ..+.... .+ ....++++. . .+.++.| .+|.+.+ ...+++.
T Consensus 159 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~---~-----~~~~~~~-~~~~~~~---~~~~~~~ 224 (392)
T PRK08243 159 DGFHGVSRASIPAGALRTFERVYPFGWLGILAE-AP-PVSDELIYA---N-----HERGFAL-CSMRSPT---RSRYYLQ 224 (392)
T ss_pred CCCCCchhhhcCcchhhceecccCceEEEEeCC-CC-CCCCceEEe---e-----CCCceEE-EecCCCC---cEEEEEE
Confidence 999999999986532111 1000 0001000 00 000111111 0 1234555 3444332 2222222
Q ss_pred ccC-CCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 333 YID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 333 ~~~-~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
+.. ........++..+.+...++......+....... ...+|.......++..+|++|||||||.++|++|||+|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~a 302 (392)
T PRK08243 225 CPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIE--KSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLA 302 (392)
T ss_pred ecCCCCcccCChhHHHHHHHHhcCcccccccccCcccc--ccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHH
Confidence 211 1111112222333333333321100000000010 1123333233346677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
++|+..|++.|..+++.+. .+.|+.|++..
T Consensus 303 i~Da~~La~~L~~~~~~~~-----~~~L~~Ye~~r 332 (392)
T PRK08243 303 ASDVRYLARALVEFYREGD-----TALLDAYSATA 332 (392)
T ss_pred HHHHHHHHHHHHHHhccCC-----HHHHHHHHHHH
Confidence 9999999999988876531 24578999543
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=238.09 Aligned_cols=295 Identities=14% Similarity=0.143 Sum_probs=177.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC----C-CccccCCHHHHHHHHHcCCCCccc-chhhhhhccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG----R-EQEWNISRKELLELVESGILVEDD-IDEATATKFNPN 182 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~----~-~r~~~IS~~~l~~L~~lGl~~~~e-ie~~i~~~~~~~ 182 (549)
.|||+||||| +|+++|+.|+++ ++|+|+||++.+. . .....|+++.++.|.++|++.... +.... .+...
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~--~~~~~ 77 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ--IFAVK 77 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc--cceee
Confidence 3899999965 699999999999 9999999987532 1 234579999999999999874321 11100 01001
Q ss_pred cccccCCcccccc-ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE-cCCc--EEEcCEEEEccC
Q 008915 183 RCGFEGKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMG 258 (549)
Q Consensus 183 ~i~f~~~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~dG~--~i~ArlVI~ADG 258 (549)
.+.+.. .+... ....+.++|..|+++|.+.+ +.|++++.+++++++..+++++.|++ ++|+ +++|++||+|||
T Consensus 78 ~~~~~~--~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG 154 (351)
T PRK11445 78 TIDLAN--SLTRNYQRSYINIDRHKFDLWLKSLI-PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADG 154 (351)
T ss_pred Eecccc--cchhhcCCCcccccHHHHHHHHHHHH-hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCC
Confidence 111111 11000 01124699999999999854 67899999999999998889988876 4564 799999999999
Q ss_pred CChHHHHHhcCCCCCCceeeEEeEeeeccCC--C-ceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccC
Q 008915 259 NFSPVVKQIRSGRKPDGVCLVVGSCARGFKD--N-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID 335 (549)
Q Consensus 259 ~~S~vrrql~~~~~~~~~~~~vg~~~~g~~~--~-~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~ 335 (549)
.+|.+|++++........ ++. .+-+.. . ....+++... . ..+|.| .||..+. ......+.
T Consensus 155 ~~S~vr~~l~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~f~~~-~------~~~~~W-~~p~~~~----~~~g~~~~- 217 (351)
T PRK11445 155 ANSMVRRHLYPDHQIRKY---VAI-QQWFAEKHPVPFYSCIFDNE-I------TDCYSW-SISKDGY----FIFGGAYP- 217 (351)
T ss_pred CCcHHhHHhcCCCchhhE---EEE-EEEecCCCCCCCcceEEecc-C------CCceEE-EeCCCCc----EEeccccc-
Confidence 999999998754322111 111 111111 1 1111222111 1 247899 7998643 22211121
Q ss_pred CCCCcccHHHHHH---HHHHhCcccccccCCceeEeeeeeeeeccccCCCC-CccCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 336 PQAGSPKLEELLE---RYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 336 ~~~~~~~L~~l~~---~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~-~~~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
.. +..+.++ +++..++. ...+. .+...+.++....... ....+|+++||||||++||++|+|++.+
T Consensus 218 -~~---~~~~~~~~l~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~a 287 (351)
T PRK11445 218 -MK---DGRERFETLKEKLSAFGF----QFGKP--VKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYA 287 (351)
T ss_pred -cc---chHHHHHHHHHHHHhccc----ccccc--cccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHH
Confidence 11 1122222 23222211 01110 1111122222111111 2245899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
++++..+++.|.++. .. .++.|++..
T Consensus 288 l~sa~~la~~l~~~~------~~---~~~~y~~~~ 313 (351)
T PRK11445 288 LDSARILSEVLNKQP------EK---LNTAYWRKT 313 (351)
T ss_pred HHhHHHHHHHHHhcc------cc---hHHHHHHHH
Confidence 999999998886653 12 247899543
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=239.48 Aligned_cols=305 Identities=19% Similarity=0.173 Sum_probs=181.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~- 188 (549)
||+||||| +|+++|+.|+++|++|+|+||.+.+... +.+.|+++.+..|..+|+++. +... ......+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~--~~~~---~~~~~~~~~~~~ 76 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKG--IKNA---GQILSTMNLLDD 76 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHH--HHhc---CCcccceeEEcC
Confidence 79999976 5999999999999999999999876533 456789999999999998743 1110 00001111110
Q ss_pred -Ccc---ccc-cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 189 -KGE---IWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 189 -~~~---l~~-~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+.. +.. ....++.+++..|.+.|.+.+. ..+++.+++|++++.+++++.|++++|+++++++||+|||.+|.+
T Consensus 77 ~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 77 KGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred CCCEEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence 100 000 1123467899999999998865 358999999999998888999999889899999999999999999
Q ss_pred HHHhcCCCCCCc--eeeEEeEee-eccCC-CceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCC--C
Q 008915 264 VKQIRSGRKPDG--VCLVVGSCA-RGFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP--Q 337 (549)
Q Consensus 264 rrql~~~~~~~~--~~~~vg~~~-~g~~~-~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~--~ 337 (549)
|++++...+... .....+... ...+. ....+. + . ..+.+| .+|..++ ...+.+..... .
T Consensus 155 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~-----~-----~~g~~~-~~p~~~~---~~~~~~~~~~~~~~ 219 (373)
T PRK06753 155 RQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEY-W-----G-----TKGRFG-IVPLLNN---QAYWFITINAKERD 219 (373)
T ss_pred HHHhCCCCCceEcceEEEEEEeccccccCccceEEE-E-----c-----CCCEEE-EEEcCCC---eEEEEEEeccccCC
Confidence 999875432211 110111111 01000 001111 1 0 134566 6787754 22222222111 1
Q ss_pred CC-cccHHHHHHHHHHh-CcccccccCCceeEeeeeeeeeccccCC-CCCccCCcEEEeCCCCCCCCCCCCCchhhHHHH
Q 008915 338 AG-SPKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDASGIQSPVSFGGFGSLTRH 414 (549)
Q Consensus 338 ~~-~~~L~~l~~~~~~~-lp~~~~~~l~~~~~~r~~~g~~P~~~~~-~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd 414 (549)
+. ...-.+.+.+++.. .+.++.+ ++..... ..+ ..+.+... ..++..+|++|||||||.++|++|||.|++++|
T Consensus 220 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~D 296 (373)
T PRK06753 220 PKYSSFGKPHLQAYFNHYPNEVREI-LDKQSET-GIL-HHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMED 296 (373)
T ss_pred cccccccHHHHHHHHhcCChHHHHH-HHhCCcc-cce-eeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHH
Confidence 01 11111222222222 2222221 1111000 000 11222211 235677999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCccc
Q 008915 415 LGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPV 449 (549)
Q Consensus 415 ~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~ 449 (549)
+..|++.|.. .. .-+.|+.|++.....
T Consensus 297 a~~L~~~L~~----~~----~~~al~~Y~~~r~~~ 323 (373)
T PRK06753 297 AIVLANCLNA----YD----FEKALQRYDKIRVKH 323 (373)
T ss_pred HHHHHHHhhh----cc----HHHHHHHHHHHhhHH
Confidence 9988877742 11 124568999655433
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=243.93 Aligned_cols=314 Identities=14% Similarity=0.130 Sum_probs=182.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
-+|+||||| +|+++|+.|+++|++|.|+||.+..+. .+...|+++.++.|.++|++++. ... .+.+..+.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l--~~~---~~~~~~~~~~~ 77 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRL--SGT---GVTPKALYLMD 77 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHH--hhc---ccCcceEEEec
Confidence 369999976 599999999999999999999876543 35678999999999999998542 111 11111111111
Q ss_pred Cc--------c---cccc--ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEc---CCcEEEcC
Q 008915 189 KG--------E---IWVE--DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EGKILSSH 251 (549)
Q Consensus 189 ~~--------~---l~~~--~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~---dG~~i~Ar 251 (549)
+. . .... ....+.+++..|.+.|.+++.+. +++++.+++|+++..++++++|++. ++++++||
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~ad 157 (400)
T PRK06475 78 GRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAA 157 (400)
T ss_pred CCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecC
Confidence 00 0 0000 00113589999999999998764 6899999999999988888888763 34589999
Q ss_pred EEEEccCCChHHHHHhcCCC-CCCceeeEEeEee-eccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 252 LIIDAMGNFSPVVKQIRSGR-KPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 252 lVI~ADG~~S~vrrql~~~~-~~~~~~~~vg~~~-~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
+||+|||.+|.+|++++... .+.......+.+. ..++. ...+.+..........+.+.. +. .+|..++. ...+
T Consensus 158 lvIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~-~~-~~p~~~~~--~~~~ 232 (400)
T PRK06475 158 YLIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPA-SFLSAMPEHKAVSAWLGNKAH-FI-AYPVKGGK--FFNF 232 (400)
T ss_pred EEEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcch-hhhhhcccCCceEEEEcCCCE-EE-EEEccCCc--EEEE
Confidence 99999999999999985432 1212211111111 11110 000000000000000011222 22 57776541 2222
Q ss_pred EEEccCCC-C---C-cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCc-cCCcEEEeCCCCCCCCCC
Q 008915 330 MFTYIDPQ-A---G-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA-AFNRILQFGDASGIQSPV 403 (549)
Q Consensus 330 l~~~~~~~-~---~-~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~-~~~rvlLVGDAA~~v~Pl 403 (549)
+....+.. . . ....+++.+.|-...|.+... ++... . ...+|++...+.++ ..+|++|||||||.++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-i~~~~---~-~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~ 307 (400)
T PRK06475 233 VAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQI-LAAID---E-WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPF 307 (400)
T ss_pred EEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHH-HhcCC---c-eeECcCcccCCCcceecCCEEEEecccccCCch
Confidence 22111111 0 1 112222222221122222221 11111 1 12456665444444 458999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 404 tg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
+|||.|++++|+..|++.|.. .++ ...|+.|++.+.
T Consensus 308 ~GqG~n~aieDa~~La~~L~~----~~~----~~aL~~Ye~~R~ 343 (400)
T PRK06475 308 AAQGAAMAIEDAAALAEALDS----DDQ----SAGLKRFDSVRK 343 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhc----CCH----HHHHHHHHHHHH
Confidence 999999999999999987742 221 245789996544
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=238.86 Aligned_cols=289 Identities=18% Similarity=0.177 Sum_probs=177.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCc-ccccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR-CGFEGK 189 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~-i~f~~~ 189 (549)
|||||||| +|+++|..|++.|++|+|||+++..+....|.++...+ .++++ +..+...+.... +.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~- 70 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDL---SDLGL------ADCVEHVWPDVYEYRFPK- 70 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhh---hhhch------hhHHhhcCCCceEEecCC-
Confidence 89999965 69999999999999999999987555445666665543 33342 222222222211 11111
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CCEEEEEEcCCcEEEcCEEEEccCCChHHHHHhc
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrql~ 268 (549)
.....+. ....+++..|++.|.+++.+.|++++ .++++++..+ ++.+.|++++|++++|++||+|||.+|.+++...
T Consensus 71 ~~~~~~~-~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~ 148 (388)
T TIGR01790 71 QPRKLGT-AYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRF 148 (388)
T ss_pred cchhcCC-ceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccC
Confidence 1111111 12358999999999999988888886 5578888776 6677788878889999999999999996643211
Q ss_pred CCCCCCceeeEEeEeee--ccC-CCceeeeeecCCcccc-cC---CCCceeEEEEecCCCCCccceEEEEEccCCCC---
Q 008915 269 SGRKPDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSVKK-VG---DSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA--- 338 (549)
Q Consensus 269 ~~~~~~~~~~~vg~~~~--g~~-~~~~~ei~~~~~~~~~-~~---~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~--- 338 (549)
.....-+.+ .|...+ ..+ +.+ ..++++...... .+ +....++| .||.+++ ..++- ......
T Consensus 149 ~~~~~~q~~--~G~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~f~~-~lP~~~~----~~~v~-~~~~~~~~~ 219 (388)
T TIGR01790 149 PLNVGFQVA--YGVEARLSRPPHGPS-SMVIMDARVDQLAAPELKGYRPTFLY-AMPLGST----RVFIE-ETSLADRPA 219 (388)
T ss_pred CCCceEEEE--EEEEEEEcCCCCCCC-ceEEEeccccccccccccCCCCceEE-EeecCCC----eEEEE-eccccCCCC
Confidence 111111111 122221 111 111 123333211110 00 01123788 8999764 22221 111111
Q ss_pred -CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHH
Q 008915 339 -GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 417 (549)
Q Consensus 339 -~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~ 417 (549)
....+++.+.+|++.++ + ...++.+...+.+|.....+ ...+|+++||||||++||+||+||+.+++++..
T Consensus 220 ~~~~~~~~~l~~~~~~~g-~-----~~~~i~~~~~~~iP~~~~~~--~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~ 291 (388)
T TIGR01790 220 LPRDRLRQRILARLNAQG-W-----QIKTIEEEEWGALPVGLPGP--FLPQRVAAFGAAAGMVHPTTGYSVARALSDAPG 291 (388)
T ss_pred CCHHHHHHHHHHHHHHcC-C-----eeeEEEeeeeEEEecccCCC--ccCCCeeeeechhcCcCCcccccHHHHHHHHHH
Confidence 11245566666665442 1 12223444567888865432 377999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 008915 418 LSTGVYEAVRGD 429 (549)
Q Consensus 418 La~~i~~Al~~g 429 (549)
+++.|.++++.+
T Consensus 292 la~~l~~~~~~~ 303 (388)
T TIGR01790 292 LAAAIAQALCQS 303 (388)
T ss_pred HHHHHHHHhccC
Confidence 999999998765
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=249.57 Aligned_cols=294 Identities=16% Similarity=0.177 Sum_probs=168.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC--CCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL--KGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~--~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+||||||||| +|+++|+.|+++|++|+|+||.++ +.+.....|+++.++.|+++|+++.. +... .......+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l--~~i~-~~~~~~~v~~ 109 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECA--EGIG-MPCFGYVVFD 109 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhH--hhcC-cceeeeEEEE
Confidence 6999999976 599999999999999999999873 22222336899999999999998642 2111 0111111110
Q ss_pred cCCcccccc---ccccceeCHHHHHHHHHHHH---HhcCCEEEeCceEEEEEEECC-------EEEEEEcC---------
Q 008915 187 EGKGEIWVE---DILNLGVSPAKLIEIVKKRF---ISLGGVIFEGYSVSSICTYEN-------AAVLLLAE--------- 244 (549)
Q Consensus 187 ~~~~~l~~~---~~l~~~V~~~~L~~~L~~~a---~~~G~~v~~~t~v~~i~~~~d-------gv~V~~~d--------- 244 (549)
..+..+..+ ...+..+++..|.+.|.+++ ...++++++ ++++++..+++ +++++.++
T Consensus 110 ~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f 188 (567)
T PTZ00367 110 HKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPF 188 (567)
T ss_pred CCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCccccccccc
Confidence 101111111 11234567788888888887 335778865 47888755433 35555443
Q ss_pred --------------CcEEEcCEEEEccCCChHHHHHhcCCCC-CC-ceeeEEeEeeec--cCCCceeeeeecCCcccccC
Q 008915 245 --------------GKILSSHLIIDAMGNFSPVVKQIRSGRK-PD-GVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVG 306 (549)
Q Consensus 245 --------------G~~i~ArlVI~ADG~~S~vrrql~~~~~-~~-~~~~~vg~~~~g--~~~~~~~ei~~~~~~~~~~~ 306 (549)
+++++|++||+|||.+|.+|++++...+ ++ ..+. .+..... .+....+.+++.
T Consensus 189 ~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~-~g~~~~~~~lp~~~~~~v~~g-------- 259 (567)
T PTZ00367 189 REDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHF-VGLVLKNVRLPKEQHGTVFLG-------- 259 (567)
T ss_pred ccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEE-EEEEEecccCCCCCeeEEEEc--------
Confidence 5689999999999999999999975422 11 1121 1222211 112222232221
Q ss_pred CCCceeEEEEecCCCCCccceEEEEEccCC-CCCcccHHHHHHHH-HHhCcc-cccc---cCCceeEeeeeeeeeccccC
Q 008915 307 DSEVQLFWEAFPAGSGPLDRTTYMFTYIDP-QAGSPKLEELLERY-WDLMPE-YQGV---TLDNLEIQRVIYGIFPTYRD 380 (549)
Q Consensus 307 ~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~-~~~~~~L~~l~~~~-~~~lp~-~~~~---~l~~~~~~r~~~g~~P~~~~ 380 (549)
..+.+| .||.+++. ... +..+... .+......+.+.+. ...+|+ ++.. .+.+.. ....+|....
T Consensus 260 --~~gpi~-~yPl~~~~--~r~-lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~----~l~~~p~~~~ 329 (567)
T PTZ00367 260 --KTGPIL-SYRLDDNE--LRV-LVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTK----RIRSMPNARY 329 (567)
T ss_pred --CCceEE-EEEcCCCe--EEE-EEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccC----CeEEeeHhhC
Confidence 124455 68887652 222 2223221 11100112211111 111111 1100 001000 0112344433
Q ss_pred CCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 008915 381 SPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 426 (549)
Q Consensus 381 ~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al 426 (549)
.+.++..+|++|||||||++||++|||+|.+++|+..|++.|..+.
T Consensus 330 p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~ 375 (567)
T PTZ00367 330 PPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIK 375 (567)
T ss_pred CCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 3445677899999999999999999999999999999999887643
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=243.97 Aligned_cols=308 Identities=15% Similarity=0.077 Sum_probs=177.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~- 188 (549)
||+||||| +|+++|+.|+++|++|+|+||.+..+. ...+.+++..+..|+++|+++.. .. ..+....+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l--~~---~~~~~~~~~~~~~ 76 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQL--RE---AGYQIEHVRSVDP 76 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHH--Hh---ccCCccceEEEcC
Confidence 79999976 599999999999999999999876543 24567788889999999987531 11 111111111110
Q ss_pred -Ccc---cc---cccccc---ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 189 -KGE---IW---VEDILN---LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 189 -~~~---l~---~~~~l~---~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
+.. +. .....+ +.+.+..|.+.|.+++. .+++++.+++|++++.++++++|++++|++++||+||+|||
T Consensus 77 ~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG 155 (391)
T PRK07588 77 TGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG 155 (391)
T ss_pred CCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence 000 00 001111 46889999999988664 47899999999999998899999998999999999999999
Q ss_pred CChHHHHHhcCCCC-CCc-e-eeEEeEeeeccC--CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEc
Q 008915 259 NFSPVVKQIRSGRK-PDG-V-CLVVGSCARGFK--DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY 333 (549)
Q Consensus 259 ~~S~vrrql~~~~~-~~~-~-~~~vg~~~~g~~--~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~ 333 (549)
.+|.+|+++..... +.. . +.........+. .......+. + ...++- .+|..++ ...+++..
T Consensus 156 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~-~g~~~~-~~p~~~~---~~~~~~~~ 221 (391)
T PRK07588 156 LHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYN---------E-VGRQVA-RVALRGD---RTLFLFIF 221 (391)
T ss_pred CCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEe---------C-CCCEEE-EEecCCC---CeEEEEEE
Confidence 99999997643221 111 1 111010011111 000011110 0 112222 5676554 22233322
Q ss_pred cCCCC----CcccHHHHHHHHHHh-CcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCch
Q 008915 334 IDPQA----GSPKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (549)
Q Consensus 334 ~~~~~----~~~~L~~l~~~~~~~-lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~ 408 (549)
..... ......+.+.+.+.. .+....+ ++...-.... .+.+.......++..+|++|+|||||.++|+.|||.
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~ 299 (391)
T PRK07588 222 RAEHDNPPLTPAEEKQLLRDQFGDVGWETPDI-LAALDDVEDL-YFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGS 299 (391)
T ss_pred EcCCccccCCHHHHHHHHHHHhccCCccHHHH-HHhhhcccch-heeeeeeeccCccccCCEEEEEccccCCCCccCCcH
Confidence 21111 111222222222211 1111111 0000000000 001111112235678999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 409 g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
|++++|+..|++.|.... +. .-..|+.||+...
T Consensus 300 n~aieDa~~La~~L~~~~--~~----~~~al~~Y~~~R~ 332 (391)
T PRK07588 300 GLAITEAYVLAGELARAG--GD----HRRAFDAYEKRLR 332 (391)
T ss_pred HHHHHHHHHHHHHHHhcc--CC----HHHHHHHHHHHHH
Confidence 999999999998886421 11 1234689996443
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=244.75 Aligned_cols=314 Identities=16% Similarity=0.138 Sum_probs=187.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-CCccccCCHHHHHHHHHcCCCCcccchhh-hhh----cc-C
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEA-TAT----KF-N 180 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-~~r~~~IS~~~l~~L~~lGl~~~~eie~~-i~~----~~-~ 180 (549)
.++||+||||| +|+++|+.|+++|++|+||||++... ..+.+.++..+++.|+++|++++. .+. ... .+ .
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l--~~~~~~~~~~~~~~~ 99 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERM--VDKGVSWNVGKVFLR 99 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHH--HhhCceeeceeEEeC
Confidence 46999999965 69999999999999999999997543 346778999999999999997531 111 000 00 0
Q ss_pred CCc-ccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEc--CCc-EEEcCEEEE
Q 008915 181 PNR-CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EGK-ILSSHLIID 255 (549)
Q Consensus 181 ~~~-i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~--dG~-~i~ArlVI~ 255 (549)
... ..+.............+.+++..|++.|.+++.+. +++++.+++++++..+++++++++. +|. +++|++||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVg 179 (547)
T PRK08132 100 DEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIA 179 (547)
T ss_pred CCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEE
Confidence 000 01110000000001123467888999999999876 6799999999999999898887764 344 799999999
Q ss_pred ccCCChHHHHHhcCCCCC---CceeeEEeEeee-ccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 256 AMGNFSPVVKQIRSGRKP---DGVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 256 ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~-g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
|||.+|.+|+++++.... .....++..... .++. ....++. .+.. ...++| .+|..++ ...+.+
T Consensus 180 ADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~--~~~~~~~-~~~~-----~~~~~~-~~~~~~~---~~~~~~ 247 (547)
T PRK08132 180 CDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPT--ERWFWFD-PPFH-----PGQSVL-LHRQPDN---VWRIDF 247 (547)
T ss_pred CCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCC--eeeEEEe-ccCC-----CCcEEE-EEeCCCC---eEEEEE
Confidence 999999999998765331 111211111111 1110 0011111 0111 123444 4555433 222112
Q ss_pred EccC-CCCCc-ccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchh
Q 008915 332 TYID-PQAGS-PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFG 409 (549)
Q Consensus 332 ~~~~-~~~~~-~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g 409 (549)
.... ..+.. ...+++.+...+.++.. .+.++.. ...++.......++..+||+|+|||||.++|+.|||+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~--~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n 320 (547)
T PRK08132 248 QLGWDADPEAEKKPENVIPRVRALLGED-----VPFELEW--VSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGAN 320 (547)
T ss_pred ecCCCCCchhhcCHHHHHHHHHHHcCCC-----CCeeEEE--EEeeeeeeeeecccccccEEEEecccccCCCccccccc
Confidence 1111 11111 12222222222223211 1111111 11233333334567889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 410 SLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 410 ~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
++++|+..|+..|...++.. . .-+.|+.|++.+.
T Consensus 321 ~gi~DA~~LawkLa~vl~g~-~---~~~lL~~Ye~eR~ 354 (547)
T PRK08132 321 SGIQDADNLAWKLALVLRGR-A---PDSLLDSYASERE 354 (547)
T ss_pred chHHHHHHHHHHHHHHHcCC-C---cHHHHHHHHHHHH
Confidence 99999999999988877542 1 2346789995443
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=239.57 Aligned_cols=360 Identities=17% Similarity=0.199 Sum_probs=203.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~- 188 (549)
||+||||| +|+++|+.|+++|++|+|+||++.++.. ...+++++.++.|.++|+++. +... ......+.+..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~--l~~~---~~~~~~~~~~~~ 76 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDA--LDAI---GIRTRELAYFNR 76 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHH--HHhh---CCCCcceEEEcC
Confidence 89999976 5999999999999999999999866532 345788899999999998753 2111 11001111110
Q ss_pred -Cccccc-------cc-cccceeCHHHHHHHHHHHHHhc-CC-EEEeCceEEEEEEECCEEEEEEcCC-----cEEEcCE
Q 008915 189 -KGEIWV-------ED-ILNLGVSPAKLIEIVKKRFISL-GG-VIFEGYSVSSICTYENAAVLLLAEG-----KILSSHL 252 (549)
Q Consensus 189 -~~~l~~-------~~-~l~~~V~~~~L~~~L~~~a~~~-G~-~v~~~t~v~~i~~~~dgv~V~~~dG-----~~i~Arl 252 (549)
+..++. .. ...+.++|..|++.|.+++.+. |. +++.+++|+++..+++++++.+.++ ++++||+
T Consensus 77 ~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adl 156 (413)
T PRK07538 77 HGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDV 156 (413)
T ss_pred CCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeE
Confidence 111110 00 0124589999999999998764 65 6999999999998888877776542 3899999
Q ss_pred EEEccCCChHHHHHhcCCC-CCC--ceeeEEeEee-eccCCCceeeeeecCCcccccCCCCceeEEEEecCCCC--C--c
Q 008915 253 IIDAMGNFSPVVKQIRSGR-KPD--GVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG--P--L 324 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~-~~~--~~~~~vg~~~-~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g--~--~ 324 (549)
||+|||.+|.+|+++.... ++. +.....+.+. ..+.... .++.. .. ..+.+. .||..++ + .
T Consensus 157 vIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~-------g~-~~~~~~-~~p~~~~~~~~g~ 225 (413)
T PRK07538 157 LIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGR--SMVMA-------GH-LDGKLV-VYPISEPVDADGR 225 (413)
T ss_pred EEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCC--cEEEE-------cC-CCCEEE-EEECCCCcccCCc
Confidence 9999999999999986433 111 1111111110 0000000 00000 00 011122 4554321 0 0
Q ss_pred cceEEEEEccCC---C------CCcccHHHHHHHHHHhCcc---cccccCCceeEeeeeeeeeccccCC-CCCccCCcEE
Q 008915 325 DRTTYMFTYIDP---Q------AGSPKLEELLERYWDLMPE---YQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRIL 391 (549)
Q Consensus 325 ~~~~~l~~~~~~---~------~~~~~L~~l~~~~~~~lp~---~~~~~l~~~~~~r~~~g~~P~~~~~-~~~~~~~rvl 391 (549)
....+.+..... . ......+++++.|....+. +... +... ... -.+|.+... ..++..+|++
T Consensus 226 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~---~~~-~~~p~~~~~~~~~w~~grv~ 300 (413)
T PRK07538 226 QLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPAL-IRAA---EAI-YEYPMVDRDPLPRWTRGRVT 300 (413)
T ss_pred eEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHH-HhcC---cce-eeccccccCCCCcccCCcEE
Confidence 112222222111 0 0111345554433222111 1111 1100 011 124555433 2356779999
Q ss_pred EeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhH---H
Q 008915 392 QFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLA---K 468 (549)
Q Consensus 392 LVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~---~ 468 (549)
|||||||.++|++|||.|.+++|+..|++.|.+. ++ .-+.|+.|++...+......+ .+... .
T Consensus 301 LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~----~~~aL~~Ye~~R~~~~~~~~~-------~s~~~~~~~ 366 (413)
T PRK07538 301 LLGDAAHPMYPVGSNGASQAILDARALADALAAH---GD----PEAALAAYEAERRPATAQIVL-------ANRLNGPEG 366 (413)
T ss_pred EEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CC----HHHHHHHHHHHhhHHHHHHHH-------HhhhcChHH
Confidence 9999999999999999999999999999888652 22 234578999654433222222 11110 0
Q ss_pred HHHHHHhhCCCcHHHHHhhcChhhhHhhHHHHHHHHHH
Q 008915 469 TLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYY 506 (549)
Q Consensus 469 ~l~~~~~~~P~ll~~~~~~~g~~~~~~~~~~~~~~~~~ 506 (549)
++-......|.-+..+...+.-..+..++..|-.+..|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
T PRK07538 367 VLQLVEERAPGGFADIDDVISSAELEAIAARYKAAAGF 404 (413)
T ss_pred HHHHHHhhCCCCccchhhcCCHHHHHHHHHHHHHhhCC
Confidence 01112334678888888777766666666555544443
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=238.22 Aligned_cols=317 Identities=15% Similarity=0.187 Sum_probs=175.5
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC-CCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccC----
Q 008915 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQEWNISRKELLELVESGILVEDDIDEATATKFN---- 180 (549)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~-~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~---- 180 (549)
.+.+||||||||| +|+++|++|+++|++|+|+||... +.......++++.+..|+++|+++.. +........
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l--~~~~~~~~~~~~v 117 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCL--EGIDAQKATGMAV 117 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchh--hhccCcccccEEE
Confidence 3457999999976 599999999999999999999854 22223446888899999999998642 221111111
Q ss_pred --CCc---ccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCE---EEEEEcCCc--EEE
Q 008915 181 --PNR---CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA---AVLLLAEGK--ILS 249 (549)
Q Consensus 181 --~~~---i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg---v~V~~~dG~--~i~ 249 (549)
.+. +.|.....-......++.+++..|.+.|.+++.+. ++++.++ +++++..+++. +++...+|+ +++
T Consensus 118 ~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~ 196 (514)
T PLN02985 118 YKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTAL 196 (514)
T ss_pred EECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEE
Confidence 110 11110000000012346789999999999999876 5677755 57777655543 333334565 577
Q ss_pred cCEEEEccCCChHHHHHhcCCCCCCceeeEEeEeeec--cCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccce
Q 008915 250 SHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT 327 (549)
Q Consensus 250 ArlVI~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g--~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~ 327 (549)
||+||+|||.+|.+|++++...+...... ++..... .+......+++. ..+.+. .+|.+++ ..
T Consensus 197 AdLVVgADG~~S~vR~~l~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~l-~ypi~~~---~~ 261 (514)
T PLN02985 197 APLTVVCDGCYSNLRRSLNDNNAEVLSYQ-VGYISKNCRLEEPEKLHLIMS----------KPSFTM-LYQISST---DV 261 (514)
T ss_pred CCEEEECCCCchHHHHHhccCCCcceeEe-EEEEEccccCCCCCcceEEcC----------CCceEE-EEEeCCC---eE
Confidence 99999999999999999975433211111 1111110 111111222211 112222 5676654 22
Q ss_pred EEEEEccCC-CCC--cccHHHHHHHHH-HhCcc-cccc---cCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCC
Q 008915 328 TYMFTYIDP-QAG--SPKLEELLERYW-DLMPE-YQGV---TLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399 (549)
Q Consensus 328 ~~l~~~~~~-~~~--~~~L~~l~~~~~-~~lp~-~~~~---~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~ 399 (549)
..++.+... .+. ...+.+.+.+.. ..+|+ +++. ..++.. .....|...........+|++|+|||||+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~----~~~~~p~~~l~~~~~~~~~vvLiGDAaH~ 337 (514)
T PLN02985 262 RCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGA----HIKVVPTKRMSATLSDKKGVIVLGDAFNM 337 (514)
T ss_pred EEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhccccc----ceeecCcccccccccCCCCEEEEeccccc
Confidence 222222211 110 112222222211 11111 1110 001100 01123433322223445899999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCCh-hhhHhhhhhhhcCc
Q 008915 400 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDS-YSLSLLNPYMKLGD 447 (549)
Q Consensus 400 v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~-~~l~~L~~Y~~l~d 447 (549)
+||++|||+|.++.|+..|++.|... . +..+. ...+.|+.|++.+.
T Consensus 338 ~~P~~GQGmn~AleDA~vLa~lL~~~-~-~~~~~~~~~~aL~~y~~~Rk 384 (514)
T PLN02985 338 RHPAIASGMMVLLSDILILRRLLQPL-S-NLGNANKVSEVIKSFYDIRK 384 (514)
T ss_pred CCCCccccHhHHHHHHHHHHHHhhhc-c-cccchhHHHHHHHHHHHHhh
Confidence 99999999999999999999988653 1 10011 22356789996544
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=243.67 Aligned_cols=314 Identities=17% Similarity=0.153 Sum_probs=187.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHhC-CCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhc---cCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATK---FNPN 182 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~-GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~---~~~~ 182 (549)
.++||+||||| +|+++|+.|++. |++|.||||.+.+.. .+...|++.+++.|+++|++++..-+...... +++.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 37999999965 699999999994 999999999875433 35567899999999999998642111111000 1110
Q ss_pred -----ccc----ccCCccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEECC---EEEEEEc-----
Q 008915 183 -----RCG----FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN---AAVLLLA----- 243 (549)
Q Consensus 183 -----~i~----f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d---gv~V~~~----- 243 (549)
.+. +........+.. .+.+++..+.+.|.+++.+.|. ++..++++++++++++ .|+|+++
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~-~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFP-HVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CccccceeccccccccCCCCCCCc-cEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 000 000000000111 1467888999999999988765 7788999999987653 4777774
Q ss_pred -CC--cEEEcCEEEEccCCChHHHHHhcCCCC---CCceeeEEeEee-eccCCCceeeeeecCCcccccCCCCceeEEEE
Q 008915 244 -EG--KILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEA 316 (549)
Q Consensus 244 -dG--~~i~ArlVI~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~-~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~ 316 (549)
+| ++++||+||+|||++|.||+++++... ..+.+.++.... ..+++......+.. +.+..++ .
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~--------~~~g~~~--~ 259 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQS--------ASEGSIL--L 259 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEec--------CCCceEE--E
Confidence 34 489999999999999999999987543 222222221111 12322111101110 0022333 3
Q ss_pred ecCCCCCccceEEEEEccCCC--C----CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCc-----
Q 008915 317 FPAGSGPLDRTTYMFTYIDPQ--A----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA----- 385 (549)
Q Consensus 317 fP~~~g~~~~~~~l~~~~~~~--~----~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~----- 385 (549)
+|..++. ...+.+...... . ...+.+++.+.+.+.++.+.. ....+.+ +..++.....+.++
T Consensus 260 ~P~~~g~--~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~-~~~~v~w----~s~y~i~~r~a~~f~~~~~ 332 (634)
T PRK08294 260 IPREGGY--LVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTL-DVKEVAW----WSVYEVGQRLTDRFDDVPA 332 (634)
T ss_pred EECCCCe--EEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCC-ceeEEeE----Eecccccceehhhcccccc
Confidence 6765441 122222221111 0 112566766666555543211 1112211 11222222222222
Q ss_pred -----cCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 386 -----AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 386 -----~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
..+||+|+|||||.++|..|||+|.++.|+..|+..|...++.. + ....|..|+.
T Consensus 333 ~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~--a--~~~lL~tYe~ 392 (634)
T PRK08294 333 EEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGR--S--PPELLHTYSA 392 (634)
T ss_pred cccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCC--C--cHHHHHHHHH
Confidence 35899999999999999999999999999999999998887642 2 2345789994
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=235.03 Aligned_cols=310 Identities=15% Similarity=0.139 Sum_probs=172.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC---CCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~---~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
.+||+||||| +|+++|+.|+++|++|+|+||.+.+. ..+...|+++.++.|+++|++++. ... ......+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l--~~~---~~~~~~~~ 76 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERM--DRE---GLVHEGTE 76 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHH--Hhc---CceecceE
Confidence 4899999976 59999999999999999999998532 224445889999999999998542 111 01001111
Q ss_pred cc-CCcc--cccccc---cc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-ECCEEEEEEc-CCc--EEEcCEEE
Q 008915 186 FE-GKGE--IWVEDI---LN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLII 254 (549)
Q Consensus 186 f~-~~~~--l~~~~~---l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V~~~-dG~--~i~ArlVI 254 (549)
+. ++.. +..+.. .. ....+..+.+.|.+++.+.|++++.+++++.+.. +++.+.|++. +|+ +++||+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvI 156 (390)
T TIGR02360 77 IAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIA 156 (390)
T ss_pred EeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEE
Confidence 11 0000 111100 01 1234567888899998888999999988877754 5566777775 675 79999999
Q ss_pred EccCCChHHHHHhcCCCCC--Cceee--EEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEE
Q 008915 255 DAMGNFSPVVKQIRSGRKP--DGVCL--VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~~~--~~~~~--~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l 330 (549)
+|||.+|.||++++....+ .+... ..+.... .+ .....+++. +.+.++.+ +|..++. ...+.
T Consensus 157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~--------~~~~~~~~--~~~~~~~--~~~~~ 222 (390)
T TIGR02360 157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSE-TP-PVSHELIYS--------NHERGFAL--CSMRSAT--RSRYY 222 (390)
T ss_pred ECCCCchhhHHhcCcccceeeeccCCcceEEEecC-CC-CCCCceEEE--------eCCCceEE--EeccCCC--cceEE
Confidence 9999999999997543211 11000 0011100 00 000011110 00122222 2332110 11122
Q ss_pred EEccCCCC-CcccHHHHHHHHHHhCc-ccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCch
Q 008915 331 FTYIDPQA-GSPKLEELLERYWDLMP-EYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (549)
Q Consensus 331 ~~~~~~~~-~~~~L~~l~~~~~~~lp-~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~ 408 (549)
+....... .....+.+.+...+.++ .+.........+. ....|.......++..+|++|||||||.++|+.|||+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~ 299 (390)
T TIGR02360 223 VQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIE---KSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGL 299 (390)
T ss_pred EEcCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCccc---eeeeeHHhhccccCccCCEEEEEccccCCCCCcCCch
Confidence 22211000 00011111222222221 1111100000000 1223443333446778999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 409 g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
|++++|+..|++.|.++..++ .-..|+.|++..
T Consensus 300 n~aieDA~~La~~L~~~~~~~-----~~~al~~Y~~~R 332 (390)
T TIGR02360 300 NLAASDVHYLYEALLEHYQEG-----SSAGIEGYSARA 332 (390)
T ss_pred hHHHHHHHHHHHHHHHHhccC-----hHHHHHHHHHHH
Confidence 999999999999987765432 123468899644
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=228.58 Aligned_cols=307 Identities=16% Similarity=0.089 Sum_probs=175.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
-||+||||| +|+++|+.|+++|++|+|+||++.++.. ....+++..++.|+++|+++. ++.. ........+....
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~--~~~~-~~~~~~~~~~~~~ 78 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAA--AQEH-KTRIRGASFVDRD 78 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHH--HHhh-ccCccceEEEeCC
Confidence 489999976 5999999999999999999999876543 334677888999999998753 2111 0011000000000
Q ss_pred Ccccc-------ccc---cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 189 KGEIW-------VED---ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 189 ~~~l~-------~~~---~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
+..+. ... ...+.+.+..|.+.|.+++ ..|++++.++++++++.++++++|++++|++++||+||+|||
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 00000 000 0124577888888776544 468899999999999988889999999999999999999999
Q ss_pred CChHHHHHhcCCCCC-Cc-eeeE--EeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEcc
Q 008915 259 NFSPVVKQIRSGRKP-DG-VCLV--VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (549)
Q Consensus 259 ~~S~vrrql~~~~~~-~~-~~~~--vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~ 334 (549)
.+|.+|+++...... .. .... ...+....+ .+....++ . +.+. .+. .||..++......+.|...
T Consensus 158 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~-------~-g~~~-~~~-~~~~~~~~~~~~~~~~~~~ 226 (372)
T PRK05868 158 LHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLE-LDYWQTWH-------Y-GDST-MAG-VYSARNNTEARAALAFMDT 226 (372)
T ss_pred CCchHHHHhcCCcccceeecceEEEEEEcCCCCC-CCcceEEE-------e-cCCc-EEE-EEecCCCCceEEEEEEecC
Confidence 999999998543211 11 0000 001110000 01111110 0 1112 222 4666543111112222221
Q ss_pred CCCCC---cc-cHHHHHHHHHHh---CcccccccCCceeEeeeeeeeec-cccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 335 DPQAG---SP-KLEELLERYWDL---MPEYQGVTLDNLEIQRVIYGIFP-TYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 335 ~~~~~---~~-~L~~l~~~~~~~---lp~~~~~~l~~~~~~r~~~g~~P-~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
+...+ .+ ..+++.+.|... .|.+.+. +.... .. +++ .......+++.+||+|||||||.++|++||
T Consensus 227 ~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~-~~~~~--~~---~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~Gq 300 (372)
T PRK05868 227 ELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHY-MRSAP--DF---YFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQ 300 (372)
T ss_pred CcccccCChHHHHHHHHHHHhhCCCchHHHHhh-cccCC--ce---eeccceEEecCCCCCCCeeeeecccccCCCccCc
Confidence 11101 11 233444444311 1222211 11110 00 122 111122366789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
|.|+++.|+..|++.|... .+++ -+.|+.||+
T Consensus 301 Ga~~AleDa~~La~~L~~~--~~~~----~~al~~ye~ 332 (372)
T PRK05868 301 GTSVALLGAYILAGELKAA--GDDY----QLGFANYHA 332 (372)
T ss_pred cHHHHHHHHHHHHHHHHhc--CCCH----HHHHHHHHH
Confidence 9999999999999888542 1111 234688994
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=230.54 Aligned_cols=311 Identities=13% Similarity=0.112 Sum_probs=187.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
..||+||||| +|+++|..|+++|++|+|+||.+.++.. +...|+++.++.|.++|+++.. ... .+....+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~--~~~---~~~~~~~~~~ 78 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAA--RQR---AVFTDHLTMM 78 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHH--Hhh---ccCCcceEEE
Confidence 5899999976 5999999999999999999999876543 3456889999999999987532 111 1101111111
Q ss_pred C---Ccc---cccc----ccc---cceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEE
Q 008915 188 G---KGE---IWVE----DIL---NLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (549)
Q Consensus 188 ~---~~~---l~~~----~~l---~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlV 253 (549)
. +.. +... ..+ .+.+++..|.+.|.+++.+.+ ++++.+++++++..+++++.|.+.+|++++|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 158 (396)
T PRK08163 79 DAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDAL 158 (396)
T ss_pred eCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEE
Confidence 0 000 0000 001 135889999999999998775 7999999999999888889998888889999999
Q ss_pred EEccCCChHHHHHhcCC-CCCCceeeEEeEee-eccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEE
Q 008915 254 IDAMGNFSPVVKQIRSG-RKPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~-~~~~~~~~~vg~~~-~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~ 331 (549)
|+|||.+|.+|+++... ..+.......+... ..++.. .. ........+ ...++| .||..++. ...+++
T Consensus 159 V~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~-~~-----~~~~~~~~g-~~~~~~-~~p~~~g~--~~~~~~ 228 (396)
T PRK08163 159 IGCDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPED-LR-----INAPVLWAG-PHCHLV-HYPLRGGE--QYNLVV 228 (396)
T ss_pred EECCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcch-hc-----cCccEEEEc-CCceEE-EEEecCCe--EEEEEE
Confidence 99999999999887322 12222111111111 111110 00 000000001 123455 67876551 222223
Q ss_pred EccCCCC-----CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCC-CCCccCCcEEEeCCCCCCCCCCCC
Q 008915 332 TYIDPQA-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDASGIQSPVSF 405 (549)
Q Consensus 332 ~~~~~~~-----~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~-~~~~~~~rvlLVGDAA~~v~Pltg 405 (549)
.+..... ...+.+++.+.|....|.++.. ++.... +..++.+... ..++..+|++|+|||||.++|++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~G 303 (396)
T PRK08163 229 TFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQM-LDKPTS----WKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMA 303 (396)
T ss_pred EECCCCCcccccCCCCHHHHHHHHcCCChHHHHH-HhcCCc----eeEccccCCCcccccccCcEEEEecccccCCcchh
Confidence 2221110 1123455555554445554432 111110 0111222111 225567999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 406 ~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
||.|.+++|+..|++.|... .++ .-..|+.|++..
T Consensus 304 qG~n~ai~Da~~La~~L~~~--~~~----~~~al~~y~~~R 338 (396)
T PRK08163 304 QGACMALEDAVTLGKALEGC--DGD----AEAAFALYESVR 338 (396)
T ss_pred ccHHHHHHHHHHHHHHHHhc--ccc----HHHHHHHHHHHH
Confidence 99999999999999877542 111 124478999544
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=238.29 Aligned_cols=313 Identities=14% Similarity=0.155 Sum_probs=182.6
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhh-hhcc------
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEAT-ATKF------ 179 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i-~~~~------ 179 (549)
.++||+||||| +|+++|+.|+++|++|+|+||++.+.. .+...+++.+++.|+++|++++ +.+.- ...+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~--l~~~g~~~~~~~~~~~ 83 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADE--VRSAGLPVDYPTDIAY 83 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHH--HHhhcCCccccCCceE
Confidence 36999999975 699999999999999999999976543 3566799999999999998753 21110 0000
Q ss_pred ----CCC---cccccCCc-cc---------cccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEE
Q 008915 180 ----NPN---RCGFEGKG-EI---------WVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLL 241 (549)
Q Consensus 180 ----~~~---~i~f~~~~-~l---------~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~ 241 (549)
... ++.+.... .. +......+.+++..|.+.|.+++.+. +++++.+++|+++..++++++++
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~ 163 (545)
T PRK06126 84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTAT 163 (545)
T ss_pred EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEE
Confidence 000 01110000 00 00011235688889999999999765 78999999999999988888877
Q ss_pred Ec---CCc--EEEcCEEEEccCCChHHHHHhcCCCCCCc-eeeEEeEeee--ccCC---CceeeeeecCCcccccCCCCc
Q 008915 242 LA---EGK--ILSSHLIIDAMGNFSPVVKQIRSGRKPDG-VCLVVGSCAR--GFKD---NSTSDVIYSSSSVKKVGDSEV 310 (549)
Q Consensus 242 ~~---dG~--~i~ArlVI~ADG~~S~vrrql~~~~~~~~-~~~~vg~~~~--g~~~---~~~~ei~~~~~~~~~~~~~~~ 310 (549)
+. +|+ +++||+||+|||.+|.||+++++...... ....+..... .... .......+...| +
T Consensus 164 ~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p-------~- 235 (545)
T PRK06126 164 VEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNP-------D- 235 (545)
T ss_pred EEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECC-------C-
Confidence 64 354 79999999999999999999976532111 0000111111 0000 000000000000 0
Q ss_pred eeEEEEecCCCCCccceEEEEE-ccCCCCC-cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCC
Q 008915 311 QLFWEAFPAGSGPLDRTTYMFT-YIDPQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFN 388 (549)
Q Consensus 311 ~~~W~~fP~~~g~~~~~~~l~~-~~~~~~~-~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~ 388 (549)
.... .+|...+ ..+.+. +...... ..+-++..+.+.+.++. .. ..++... ..++.......++..+
T Consensus 236 ~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~i~~~--~~w~~~~~~a~~~~~g 303 (545)
T PRK06126 236 RRGV-LVAIDGR----DEWLFHQLRGGEDEFTIDDVDARAFVRRGVGE--DI---DYEVLSV--VPWTGRRLVADSYRRG 303 (545)
T ss_pred ccEE-EEEECCC----CeEEEEEecCCCCCCCCCHHHHHHHHHHhcCC--CC---CeEEEee--cccchhheehhhhccC
Confidence 0111 1222211 122222 2111111 11222222222222221 11 1111111 1233333344577789
Q ss_pred cEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 389 RILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 389 rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
||+|+|||||.++|+.|||+|+++.|+..|+..|...++.. + ..+.|+.|++.+.
T Consensus 304 Rv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~--~--~~~lL~~Y~~eR~ 358 (545)
T PRK06126 304 RVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGW--A--GPALLDSYEAERR 358 (545)
T ss_pred CEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCC--C--cHHHHhhhHHHhh
Confidence 99999999999999999999999999999999998776431 1 2356789995443
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=222.29 Aligned_cols=308 Identities=18% Similarity=0.158 Sum_probs=181.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
..||+||||| +|+++|+.|+++|++|+|+||.+.++.. ....+++..++.|.++|+++. +....+....+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~-----~~~~~~~~~~~~~~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDE-----CLEAGFGFDGVDLF 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHH-----HHHhCCCccceEEE
Confidence 5799999976 5999999999999999999998765432 334678889999999998642 11111111111111
Q ss_pred C--Ccc--------ccccc-cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEc
Q 008915 188 G--KGE--------IWVED-ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 256 (549)
Q Consensus 188 ~--~~~--------l~~~~-~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~A 256 (549)
. +.. ..... .....+++..|.+.|.+.+.+.|++++.+++|+++..+++++.|.+.+|++++||+||+|
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~A 158 (375)
T PRK06847 79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGA 158 (375)
T ss_pred CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEEC
Confidence 0 000 00000 112457889999999999988899999999999999888888898888989999999999
Q ss_pred cCCChHHHHHh-cCCCCCC--ceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEc
Q 008915 257 MGNFSPVVKQI-RSGRKPD--GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY 333 (549)
Q Consensus 257 DG~~S~vrrql-~~~~~~~--~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~ 333 (549)
||.+|.+++++ +....+. ......+.... .+..+...++.. ....+. .+|..++ ..+++..
T Consensus 159 dG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~-~~p~~~~----~~~~~~~ 222 (375)
T PRK06847 159 DGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPR-PAEVDRSLMYLG----------PTTKAG-VVPLSED----LMYLFVT 222 (375)
T ss_pred cCCCcchhhHhcCCCCCceeccceEEEEEecC-CCCccceEEEeC----------CCcEEE-EEcCCCC----eEEEEEe
Confidence 99999999987 3221211 11100010000 000000011110 112222 4566543 2223322
Q ss_pred cCCCC----CcccHHHHHHHHHHhCcc--cccccCCceeEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 334 IDPQA----GSPKLEELLERYWDLMPE--YQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 334 ~~~~~----~~~~L~~l~~~~~~~lp~--~~~~~l~~~~~~r~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
.+... ....+.+.+.+.+...+. .+.. .+.+.-... ....|.+.. .+.++..+|++|||||||.++|++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~Gq 300 (375)
T PRK06847 223 EPRPDNPRIEPDTLAALLRELLAPFGGPVLQEL-REQITDDAQ-VVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQ 300 (375)
T ss_pred ccCcccccCChHHHHHHHHHHHhhcCchHHHHH-HHhcCCccc-eeeccHhhccCCCCccCCeEEEEechhccCCCCccc
Confidence 11110 011233333333332221 1111 000100001 112344332 22356789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
|.|.+++|+..|++.|... . ...+.|+.|++.+.
T Consensus 301 G~n~aieDA~~La~~L~~~----~---~~~~al~~Y~~~R~ 334 (375)
T PRK06847 301 GAGMAIEDAIVLAEELARH----D---SLEAALQAYYARRW 334 (375)
T ss_pred cHHHHHHHHHHHHHHHhhC----C---cHHHHHHHHHHHHH
Confidence 9999999999988877541 1 12345689995443
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-24 Score=224.65 Aligned_cols=318 Identities=16% Similarity=0.170 Sum_probs=174.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC--ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE--QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~--r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.+||+||||| +|+++|+.|+++|++|+|+||.+.+... ....++++.++.|.++|+++..+. ........+..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~----~~~~~~~~~~~ 81 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADI----GVPSRERIYLD 81 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccc----ccCccceEEEe
Confidence 5899999976 5999999999999999999998754322 234578899999999999753211 00000000000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHH
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrq 266 (549)
..+..+.........+.+..+.+.|.+.+ .+.+++.+++|+++..++++++|++++|++++|++||+|||.+|.+|++
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~ 159 (386)
T PRK07236 82 RDGRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQ 159 (386)
T ss_pred CCCCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHH
Confidence 00111110000011245667777777654 2458999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCC--ceeeEEeEeee-ccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCc------cceEEEEEccCCC
Q 008915 267 IRSGRKPD--GVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPL------DRTTYMFTYIDPQ 337 (549)
Q Consensus 267 l~~~~~~~--~~~~~vg~~~~-g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~------~~~~~l~~~~~~~ 337 (549)
+....++. +.+...+.... .++.. ..+.+.. .+....+ ....++ .||..+... ....+++......
T Consensus 160 l~~~~~~~~~g~~~~~~~v~~~~~~~~-~~~~~~~--~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (386)
T PRK07236 160 LLPDVRPTYAGYVAWRGLVDEAALPPE-ARAALRD--RFTFQLG-PGSHIL-GYPVPGEDGSTEPGKRRYNWVWYRNAPA 234 (386)
T ss_pred hCCCCCCCcCCeEEEEEecchHHcCch-hhhhccc--ceEEEEc-CCceEE-EEECCCCCCCcCCCCcEEEEEEEecCCC
Confidence 84322222 21111111111 01100 0000000 0000000 011122 333221100 0111111110000
Q ss_pred ---------------------C--Ccc-cHHHHHHHHHHhC-cccccccCCceeEeeeeeeeeccccCCCCCccCCcEEE
Q 008915 338 ---------------------A--GSP-KLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ 392 (549)
Q Consensus 338 ---------------------~--~~~-~L~~l~~~~~~~l-p~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlL 392 (549)
+ ..+ .++++.+.+...+ |.++.+ ++... .+ + ..+.+.....++..+|++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~--~~-~-~~~~~~~~~~~~~~grv~L 309 (386)
T PRK07236 235 GEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAEL-VEATA--QP-F-VQAIFDLEVPRMAFGRVAL 309 (386)
T ss_pred ccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHH-HhhCc--Cc-h-hhhhhcccCcccccCcEEE
Confidence 0 011 2333333333212 223332 11111 00 0 1233333334567899999
Q ss_pred eCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCccc
Q 008915 393 FGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPV 449 (549)
Q Consensus 393 VGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~ 449 (549)
||||||.++|+.|||.|.+++|+..|++.|..+. . ..-..|+.|++.+.+.
T Consensus 310 iGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~--~----~~~~al~~Ye~~R~~r 360 (386)
T PRK07236 310 LGDAAFVARPHTAAGVAKAAADAVALAEALAAAA--G----DIDAALAAWEAERLAV 360 (386)
T ss_pred EecccccCCCcchhhHHHHHHHHHHHHHHHHhcc--c----chHHHHHHHHHHhhHH
Confidence 9999999999999999999999999998886531 1 1224568999655433
|
|
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-25 Score=223.64 Aligned_cols=327 Identities=17% Similarity=0.147 Sum_probs=208.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhC----CCcEEEEccCCCCC----------CCccccCCHHHHHHHHHcCCCCcccchhh
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK----GLRVAIVERNTLKG----------REQEWNISRKELLELVESGILVEDDIDEA 174 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~----GlrVlLIEr~~~~~----------~~r~~~IS~~~l~~L~~lGl~~~~eie~~ 174 (549)
.||||||||| +|.++|+.|... -+||+|+|-...+. .+|.-.+|+.++..|..+|+|+. +.+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~--i~~~ 113 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDH--IFHD 113 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHH--hhhh
Confidence 7999999975 699999999743 68999999873321 23556799999999999999863 2222
Q ss_pred hhhccCC---------CcccccCCccccccccccceeCHHHHHHHHHH--HHHh-cCCEEEeCceEEEEEEE------C-
Q 008915 175 TATKFNP---------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKK--RFIS-LGGVIFEGYSVSSICTY------E- 235 (549)
Q Consensus 175 i~~~~~~---------~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~--~a~~-~G~~v~~~t~v~~i~~~------~- 235 (549)
....++. ..+.|.. .... ...++.+++..+...|.. ...+ ..+++...+.+.++... +
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~-d~~~--~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n 190 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDH-DNVG--IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN 190 (481)
T ss_pred ccccccceeeecccchhhhhhcc-cccc--ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC
Confidence 2222211 1122221 1111 123578888888888873 3333 36799999999988762 1
Q ss_pred -CEEEEEEcCCcEEEcCEEEEccCCChHHHHHhcCC---CCCCceeeEE--eEeeeccCCCceeeeeecCCccc--ccCC
Q 008915 236 -NAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSG---RKPDGVCLVV--GSCARGFKDNSTSDVIYSSSSVK--KVGD 307 (549)
Q Consensus 236 -dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrql~~~---~~~~~~~~~v--g~~~~g~~~~~~~ei~~~~~~~~--~~~~ 307 (549)
....|++.||..+.+||+|+|||.+|++|+..++. +.++.+..+. ..+.+........+.|...||+. |+++
T Consensus 191 ~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d 270 (481)
T KOG3855|consen 191 GMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSD 270 (481)
T ss_pred cceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeeccccc
Confidence 24567778899999999999999999999988775 3455544322 12221122345567777788887 4556
Q ss_pred CCceeEEEEecCCCCC---------cc-c-eEEEEEccCCC-CCc-----ccH----HHHHHHHHHhCcccccccCCcee
Q 008915 308 SEVQLFWEAFPAGSGP---------LD-R-TTYMFTYIDPQ-AGS-----PKL----EELLERYWDLMPEYQGVTLDNLE 366 (549)
Q Consensus 308 ~~~~~~W~~fP~~~g~---------~~-~-~~~l~~~~~~~-~~~-----~~L----~~l~~~~~~~lp~~~~~~l~~~~ 366 (549)
+-..++|..-|..... .+ . ..+...+.+.. ... +.. +.++.+.. ...+.+.. ..-++
T Consensus 271 ~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k-~~~~~q~p-p~V~~ 348 (481)
T KOG3855|consen 271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSK-RLANQQYP-PSVFE 348 (481)
T ss_pred ccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccC-cccccccC-CeEEE
Confidence 6678899654322110 00 0 00000000000 000 011 11221111 11110000 01122
Q ss_pred EeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 367 IQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 367 ~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
+.......||+.+.++..++.+|+.|||||||.+||++|||.|++..|+..|.+.+.+|+.+|. +.++...|+.|++
T Consensus 349 v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~-DlgS~~~L~~y~~ 425 (481)
T KOG3855|consen 349 VGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGL-DLGSVEHLEPYER 425 (481)
T ss_pred ecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcc-cccchhhhhHHHH
Confidence 2233334689888778899999999999999999999999999999999999999999999984 8899999999995
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=221.11 Aligned_cols=320 Identities=19% Similarity=0.159 Sum_probs=179.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC-CC-C---ccccCCHHHHHHHHHcCCCCcccchhh--hh----
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GR-E---QEWNISRKELLELVESGILVEDDIDEA--TA---- 176 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~-~~-~---r~~~IS~~~l~~L~~lGl~~~~eie~~--i~---- 176 (549)
..++|+||||| +|+++|+.|+++|++|.|+||.+.. +. . +...|+++.++.|+++|++...++... +.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 46899999976 5999999999999999999997632 11 1 346799999999999997533222211 00
Q ss_pred hcc-C--CCc--ccccCCccc-cccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEc
Q 008915 177 TKF-N--PNR--CGFEGKGEI-WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSS 250 (549)
Q Consensus 177 ~~~-~--~~~--i~f~~~~~l-~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~A 250 (549)
..+ . .+. +.+...... .......+.|+|..|++.|.+++.. ..++.+++|+++..++++++|.+++|++++|
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~a 237 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSGDKVTVVLENGQRYEG 237 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEEEEECCCCEEEc
Confidence 000 0 010 111100000 0001123578999999999766421 2467899999999999999999989989999
Q ss_pred CEEEEccCCChHHHHHhcCCCCC--CceeeEEeEeeeccCC--CceeeeeecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 251 HLIIDAMGNFSPVVKQIRSGRKP--DGVCLVVGSCARGFKD--NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 251 rlVI~ADG~~S~vrrql~~~~~~--~~~~~~vg~~~~g~~~--~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
++||+|||.+|.+|+++....++ .+.+...+.+ ...+. .......+ .+ ..+++- .+|..++. .
T Consensus 238 DlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~-~~~p~~~~~~~~~~~--------~G-~~~~~v-~~~v~~g~--~ 304 (668)
T PLN02927 238 DLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIA-DFIPADIESVGYRVF--------LG-HKQYFV-SSDVGGGK--M 304 (668)
T ss_pred CEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEc-CCCcccccccceEEE--------Ec-CCeEEE-EEcCCCCe--E
Confidence 99999999999999987432222 1111111111 10000 00000000 00 122221 33443331 1
Q ss_pred eEEEEEccCC---CCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCC-CCccCCcEEEeCCCCCCCCC
Q 008915 327 TTYMFTYIDP---QAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQSP 402 (549)
Q Consensus 327 ~~~l~~~~~~---~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~-~~~~~~rvlLVGDAA~~v~P 402 (549)
..+.|...+. .......+++.+.|-...|.++.+ +...... ....++.+...+ .++..+|++|+|||||.++|
T Consensus 305 ~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~el-I~~t~~~--~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P 381 (668)
T PLN02927 305 QWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDL-LHATEED--AILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQP 381 (668)
T ss_pred EEEEEEECCccccccchhHHHHHHHHhccCCHHHHHH-HHhCccc--cceeeeEEeccCCCccccCcEEEEcCccCCCCC
Confidence 1111211110 001112333333332233333322 1111000 001123332222 24567999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCC---CChhhhHhhhhhhhcC
Q 008915 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDF---VDSYSLSLLNPYMKLG 446 (549)
Q Consensus 403 ltg~G~g~~lrd~~~La~~i~~Al~~g~---l~~~~l~~L~~Y~~l~ 446 (549)
..|||.|+++.|+..|+..|.++++... ........|+.|++.+
T Consensus 382 ~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R 428 (668)
T PLN02927 382 NMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESR 428 (668)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHH
Confidence 9999999999999999999988764310 0112234578999543
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=216.11 Aligned_cols=320 Identities=16% Similarity=0.174 Sum_probs=180.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCC-CcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhh---hccCCCccc
Q 008915 112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA---TKFNPNRCG 185 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G-lrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~---~~~~~~~i~ 185 (549)
.|+||||| .|+++|..|+++| ++|+|+||.+..+.. ....|+++.+..|..+|+.+. ++..-. ..+....+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~--~~~~~~~~~~~~~~~~~~ 79 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEA--YTQVADSTPAPWQDIWFE 79 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhH--HHHHhcCCCccCcceeEE
Confidence 58999976 5889999999998 699999998765432 344678899999999998643 211110 000000011
Q ss_pred ccCCc---cccc--ccccc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 186 FEGKG---EIWV--EDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 186 f~~~~---~l~~--~~~l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
+.... .+.. ....+ ..++|..|.+.|.+.+. ...++.+++|+++..++++++|.+++|.+++|++||+|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~ 157 (414)
T TIGR03219 80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGI 157 (414)
T ss_pred EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCc
Confidence 11100 0000 00111 25788889998887763 35688899999999888999999988989999999999999
Q ss_pred ChHHHHHhcCC-----CCCC--ceeeEEeEeee-ccCCC-ce--eeeeecCCcccccCCCCceeEEEEecCCCCCccceE
Q 008915 260 FSPVVKQIRSG-----RKPD--GVCLVVGSCAR-GFKDN-ST--SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328 (549)
Q Consensus 260 ~S~vrrql~~~-----~~~~--~~~~~vg~~~~-g~~~~-~~--~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~ 328 (549)
+|.+|+++... ..+. +.+..-+.+.. .+... .. .+-.....+.... + ..+.++ .||..++. ...
T Consensus 158 ~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~-~~p~~~g~--~~~ 232 (414)
T TIGR03219 158 KSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYL-G-LDGHIL-TFPVRQGR--LIN 232 (414)
T ss_pred cHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEE-c-CCCeEE-EEECCCCc--EEE
Confidence 99999987421 1111 11111111110 00000 00 0000000000001 1 123344 57877652 222
Q ss_pred EEEEccCCC-------C-----CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccC-CCCCccCCcEEEeCC
Q 008915 329 YMFTYIDPQ-------A-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGD 395 (549)
Q Consensus 329 ~l~~~~~~~-------~-----~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~-~~~~~~~~rvlLVGD 395 (549)
++....+.. . .....+++.+.|....|.++.+ ++... .. ..++.+.. ...+++.+|++||||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~~--~~--~~~~~~~~~~~~~w~~grv~LiGD 307 (414)
T TIGR03219 233 VVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARAL-LECIP--AP--TLWALHDLAELPGYVHGRVALIGD 307 (414)
T ss_pred EEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHH-HHhCC--CC--CceeeeecccccceeeCcEEEEEc
Confidence 222221110 0 0113445555443333333322 11110 00 01222221 123567799999999
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcc
Q 008915 396 ASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDP 448 (549)
Q Consensus 396 AA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~ 448 (549)
|||.+.|..|||.|+++.|+..|++.|......+. + --..|+.||+...+
T Consensus 308 AAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~-~--~~~al~~Ye~~R~~ 357 (414)
T TIGR03219 308 AAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAG-D--LPALLEAYDDVRRP 357 (414)
T ss_pred ccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcc-h--HHHHHHHHHHHHhH
Confidence 99999999999999999999999988876533221 1 12347899965443
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=207.74 Aligned_cols=279 Identities=22% Similarity=0.353 Sum_probs=178.9
Q ss_pred cEEEEcch-HHHHHHHHH--HhCCCcEEEEccCCCC--CCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 112 DVIVCGGT-LGIFIATAL--SFKGLRVAIVERNTLK--GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~L--Ar~GlrVlLIEr~~~~--~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
|||||||| +|+++|..| ++.|++|+|||+++.. ...+.|..+...+. .++.++...++...+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~-----------~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLG-----------PLDSLVSHRWSGWRVYF 69 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccccccc-----------chHHHHheecCceEEEe
Confidence 89999965 699999999 8889999999998765 33345644322211 13456666666555655
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHH
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrq 266 (549)
.+...... ....+.|++..|++.|.+++. +++.++.+++|+++..+++++.|.+++|++++|++||||+|..|+..+.
T Consensus 70 ~~~~~~~~-~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~ 147 (374)
T PF05834_consen 70 PDGSRILI-DYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARP 147 (374)
T ss_pred CCCceEEc-ccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccccccc
Confidence 54332211 111247999999999999998 6667888999999999998888999899999999999999988773322
Q ss_pred hcCCCCCCceeeEEeEeee---c-cCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCC--Cc
Q 008915 267 IRSGRKPDGVCLVVGSCAR---G-FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA--GS 340 (549)
Q Consensus 267 l~~~~~~~~~~~~vg~~~~---g-~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~--~~ 340 (549)
.+. +.. .|...+ . | +.+...+ .+.. ..... .+.+++| +.|.+++. .... .++-...+ ..
T Consensus 148 ~~~-----Q~f--~G~~v~~~~~~f-~~~~~~l-MD~r-~~~~~-~~~~F~Y-~lP~~~~~-alvE--~T~fs~~~~~~~ 212 (374)
T PF05834_consen 148 LGL-----QHF--YGWEVETDEPVF-DPDTATL-MDFR-VPQSA-DGPSFLY-VLPFSEDR-ALVE--ETSFSPRPALPE 212 (374)
T ss_pred ccc-----cee--EEEEEeccCCCC-CCCceEE-EEec-ccCCC-CCceEEE-EEEcCCCe-EEEE--EEEEcCCCCCCH
Confidence 211 111 122111 1 2 1112122 2221 11100 1457777 89998652 1111 11111111 12
Q ss_pred ccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHH
Q 008915 341 PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLST 420 (549)
Q Consensus 341 ~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~ 420 (549)
..+++.+.+|++.+ ++...++.+.+.|.||.......+...++++.+|+||+++||.||.+|..+++.+..+++
T Consensus 213 ~~~~~~l~~~l~~~------g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~ 286 (374)
T PF05834_consen 213 EELKARLRRYLERL------GIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIAD 286 (374)
T ss_pred HHHHHHHHHHHHHc------CCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHH
Confidence 25566666666542 234566777888999996444556677889999999999999999998888887665555
Q ss_pred HHHH
Q 008915 421 GVYE 424 (549)
Q Consensus 421 ~i~~ 424 (549)
.+.+
T Consensus 287 ~l~~ 290 (374)
T PF05834_consen 287 ALAK 290 (374)
T ss_pred HHhh
Confidence 5443
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-21 Score=196.40 Aligned_cols=293 Identities=18% Similarity=0.179 Sum_probs=159.4
Q ss_pred ccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccC--CCcccc
Q 008915 111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFN--PNRCGF 186 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~--~~~i~f 186 (549)
-+|||||||+ |+++|.+|+|+|++|+|+|+...+|.. ...++.-+..+.|+.+|+-+ .+.+..- .+++-.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e------~i~~~gip~~~~v~~ 76 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKE------QIREQGIPLGGRVLI 76 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHH------HHHHhcCcccceeee
Confidence 4799999885 999999999999999999998777654 34566666888898888421 1111111 111110
Q ss_pred cC--Ccc---cccccc--ccceeCHHHHHHHHHHHHHhcCCEEEeCc------eEEEEEEECCEEEEEEcCCcEEEcCEE
Q 008915 187 EG--KGE---IWVEDI--LNLGVSPAKLIEIVKKRFISLGGVIFEGY------SVSSICTYENAAVLLLAEGKILSSHLI 253 (549)
Q Consensus 187 ~~--~~~---l~~~~~--l~~~V~~~~L~~~L~~~a~~~G~~v~~~t------~v~~i~~~~dgv~V~~~dG~~i~ArlV 253 (549)
++ +.+ +..++. .-..+.+..+.+.+...+... .+++.+. ....++......+|.+.+|.++++|++
T Consensus 77 ~~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dll 155 (420)
T KOG2614|consen 77 HGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLL 155 (420)
T ss_pred ecCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCC-CeeecccccccccccceeeecccccceecCCCcEEEeeEE
Confidence 10 111 111111 001233444444444333332 3555553 334444444456678888999999999
Q ss_pred EEccCCChHHHHHhcCC-CCCCceeeEEeEeeeccC-CCce-eeeeecCCcccccCCCCceeEEEEecCCCCCccceEEE
Q 008915 254 IDAMGNFSPVVKQIRSG-RKPDGVCLVVGSCARGFK-DNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~-~~~~~~~~~vg~~~~g~~-~~~~-~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l 330 (549)
|+|||+.|.||++++.. ..++..|-..+... ++ ++.. ..++. +.. +.-++| |.+.. ....|.
T Consensus 156 igCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~--~~~~~~~~~~vf~----~~~----~~~~~~---~~~~~--~~~~y~ 220 (420)
T KOG2614|consen 156 IGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGF--IPNGIPFGKKVFA----IYG----NGLHSW---PRPGF--HLIAYW 220 (420)
T ss_pred EEcCchHHHHHHHhcccCCcceeEEEEeeeee--ccCCCCcccceec----ccC----CeEEEc---ccCCc--eEEEEE
Confidence 99999999999999765 33444433222211 11 1111 11111 110 122222 11111 122222
Q ss_pred EEc--------cCC-CCC--cccHHHHHHHHHHhCcccccc-cCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCC
Q 008915 331 FTY--------IDP-QAG--SPKLEELLERYWDLMPEYQGV-TLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG 398 (549)
Q Consensus 331 ~~~--------~~~-~~~--~~~L~~l~~~~~~~lp~~~~~-~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~ 398 (549)
+.- ... .++ .....++.+.|.+.+|++-.. ..+.+. .++. -..|.+....-+...++++|+|||||
T Consensus 221 ~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~-~t~l-~~r~p~~~i~~~~s~~~vvL~GDAaH 298 (420)
T KOG2614|consen 221 FLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIV-RTPL-ADRPPWPLISVKCSPGNVVLLGDAAH 298 (420)
T ss_pred eecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhh-hchh-hhcCCcCeeeeccCCCeEEEeccccc
Confidence 220 010 011 113345555555555555443 111111 1111 11122111111334569999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHh
Q 008915 399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVR 427 (549)
Q Consensus 399 ~v~Pltg~G~g~~lrd~~~La~~i~~Al~ 427 (549)
.+-|.-|||.|.++.|+..|++.+.+|..
T Consensus 299 aM~Pf~GQG~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 299 AMTPFLGQGGNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred ccCCcccccccchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999986
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=191.65 Aligned_cols=272 Identities=15% Similarity=0.190 Sum_probs=156.7
Q ss_pred cEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
||+||||| +|+++|+.|+++ |++|+|+|+.+..+..+.|......+... + ...++.++...+....+.+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~---~---~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDA---Q---HAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchh---h---hhhhhhhheEeCCCCEEECcc
Confidence 89999976 599999999987 99999999987655555564432221110 0 001334444445444444432
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHHhc
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrql~ 268 (549)
... ..... -+.|++..|.+.|.+++.. + ++.+++|+++ +++++++ ++|++++|++||+|+|.+|+-....+
T Consensus 75 ~~~-~l~~~-Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~~ 145 (370)
T TIGR01789 75 YRR-KLKTA-YRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSAHLKGG 145 (370)
T ss_pred hhh-hcCCC-ceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCccccce
Confidence 111 11111 2468889999999877643 3 7779999988 5566555 68889999999999999985322211
Q ss_pred CCCCCCceeeEEeEeee---ccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCC----Ccc
Q 008915 269 SGRKPDGVCLVVGSCAR---GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA----GSP 341 (549)
Q Consensus 269 ~~~~~~~~~~~vg~~~~---g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~----~~~ 341 (549)
. .+ ..|...+ .+ +.+.. ++.+...-+ +++..++ ++.|.+++ ..+ +.+....+ ...
T Consensus 146 --~----Q~-f~G~~~r~~~p~-~~~~~-~lMD~~~~q---~~g~~F~-Y~lP~~~~----~~l-vE~T~~s~~~~l~~~ 207 (370)
T TIGR01789 146 --F----QV-FLGREMRLQEPH-GLENP-IIMDATVDQ---LAGYRFV-YVLPLGSH----DLL-IEDTYYADDPLLDRN 207 (370)
T ss_pred --e----eE-EEEEEEEEcCCC-CCCcc-EEEeeeccC---CCCceEE-EECcCCCC----eEE-EEEEeccCCCCCCHH
Confidence 1 11 1121111 12 11111 122221111 1123433 36788754 222 22211111 122
Q ss_pred cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccC---CCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHH
Q 008915 342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD---SPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL 418 (549)
Q Consensus 342 ~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~---~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~L 418 (549)
.+++.+.+|....+ ....++.+...|.+|.... .+.....++++++|||||++||.||+||+.+++++..|
T Consensus 208 ~l~~~l~~~~~~~g------~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~l 281 (370)
T TIGR01789 208 ALSQRIDQYARANG------WQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADAL 281 (370)
T ss_pred HHHHHHHHHHHHhC------CCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHH
Confidence 45555666654431 2233344555678897432 11112356799999999999999999999999998777
Q ss_pred HHHH
Q 008915 419 STGV 422 (549)
Q Consensus 419 a~~i 422 (549)
++.+
T Consensus 282 a~~~ 285 (370)
T TIGR01789 282 AAQP 285 (370)
T ss_pred Hhcc
Confidence 7654
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-20 Score=201.05 Aligned_cols=297 Identities=19% Similarity=0.216 Sum_probs=156.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCC---CcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhh-----hcc---
Q 008915 112 DVIVCGGT-LGIFIATALSFKG---LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA-----TKF--- 179 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G---lrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~-----~~~--- 179 (549)
|||||||| +|.++|+.|++.+ ++|+|||+...|+..-.....+.....+..+|+.+.+-+.++.. ..|
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w 80 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW 80 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence 79999975 6999999999998 99999999988775433344444455667777643211111110 000
Q ss_pred C---------CCc-------ccc------------c---------------CCc-----cccccccccceeCHHHHHHHH
Q 008915 180 N---------PNR-------CGF------------E---------------GKG-----EIWVEDILNLGVSPAKLIEIV 211 (549)
Q Consensus 180 ~---------~~~-------i~f------------~---------------~~~-----~l~~~~~l~~~V~~~~L~~~L 211 (549)
. .+. +.| . ++. ....+...++.+|+..|++.|
T Consensus 81 ~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L 160 (454)
T PF04820_consen 81 GERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFL 160 (454)
T ss_dssp SSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHH
T ss_pred CCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHH
Confidence 0 000 000 0 000 000111234679999999999
Q ss_pred HHHHHhcCCEEEeCceEEEEEEECCEE--EEEEcCCcEEEcCEEEEccCCChHHHHHh-cCCCC--CCce-eeE-EeEee
Q 008915 212 KKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQI-RSGRK--PDGV-CLV-VGSCA 284 (549)
Q Consensus 212 ~~~a~~~G~~v~~~t~v~~i~~~~dgv--~V~~~dG~~i~ArlVI~ADG~~S~vrrql-~~~~~--~~~~-~~~-vg~~~ 284 (549)
++.+.+.|+++++++ |+++..++++. .|.+++|++++||++|||+|..|.+.++. +.+.. .+.. |-. +....
T Consensus 161 ~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~ 239 (454)
T PF04820_consen 161 RRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQV 239 (454)
T ss_dssp HHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEEE
T ss_pred HHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEec
Confidence 999999999999885 88888887764 46677899999999999999999988773 32211 1111 110 00111
Q ss_pred eccCC-CceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCcccHHHHHHHHHHhCcccccccCC
Q 008915 285 RGFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLD 363 (549)
Q Consensus 285 ~g~~~-~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~ 363 (549)
..... ..+..+. .. ..+|+| .+|..++ ... .+.+.... .+-++.++++.+.++..... .
T Consensus 240 ~~~~~~~~~T~~~----a~------~~GW~W-~IPL~~~---~~~-G~V~s~~~---~s~~~A~~~l~~~l~~~~~~--~ 299 (454)
T PF04820_consen 240 PNEDPPEPYTRST----AF------EAGWIW-YIPLQNR---RGS-GYVYSSDF---ISDDEAEAELLAYLGGSPEA--E 299 (454)
T ss_dssp E-SSCTTSSEEEE----EE------SSEEEE-EEEESSE---EEE-EEEEETTT---SHHHHHHHHHHHHHTCHCTT--S
T ss_pred CcCCCCCCceeEE----ec------CCceEE-EccCCCc---ceE-EEEecccc---CCHHHHHHHHHHhcchhhhc--c
Confidence 10100 0111110 01 358999 7899865 333 22233211 12233334444443332211 1
Q ss_pred ceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhh
Q 008915 364 NLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (549)
Q Consensus 364 ~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~ 443 (549)
. ...+...| ...+...+|+++|||||+++|||.++|+.+++.. ++.|.+++..+..+.. .++.|+
T Consensus 300 ~-~~i~~~~g-------~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~a----a~~l~~~l~~~~~~~~---~~~~Yn 364 (454)
T PF04820_consen 300 P-RHIRFRSG-------RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSA----AEALAEALPDDDFSPA---ALDRYN 364 (454)
T ss_dssp C-EEEE-S-E-------EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHH----HHHHHHTHHCTTCCHH---HHHHHH
T ss_pred h-hhhccccc-------chhhcccCCEEEEcchhhccCccccccHHHHHHH----HHHHHHhcccCCCCHH---HHHHHH
Confidence 1 11111111 1336678999999999999999999999888874 4455666666654433 346677
Q ss_pred h
Q 008915 444 K 444 (549)
Q Consensus 444 ~ 444 (549)
+
T Consensus 365 ~ 365 (454)
T PF04820_consen 365 R 365 (454)
T ss_dssp H
T ss_pred H
Confidence 3
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=191.44 Aligned_cols=294 Identities=16% Similarity=0.113 Sum_probs=159.1
Q ss_pred cEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhcc---CCCcc
Q 008915 112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKF---NPNRC 184 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~---~~~~i 184 (549)
+|+||||| +|+++|+.|+++ |++|+|+||++..+.. ....++++.+..|..++ +. +...+...+ ....+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~---~~-~~~~~~~~~~~~~~~~~ 77 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAAD---PV-SAAAIGDAFNHWDDIDV 77 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcC---HH-HHHHHHHhcccCCceEE
Confidence 69999976 588899999998 9999999998865432 23467888777776544 10 111111111 11111
Q ss_pred cccCCcccccccccc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 185 GFEGKGEIWVEDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 185 ~f~~~~~l~~~~~l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
.+.+ ... ...... +.+++..|++.|.+++.+.|++++.+++++++.. ...++|+||+|||.+|.+
T Consensus 78 ~~~g-~~~-~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S~v 143 (765)
T PRK08255 78 HFKG-RRI-RSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA------------LAADADLVIASDGLNSRI 143 (765)
T ss_pred EECC-EEE-EECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------hhcCCCEEEEcCCCCHHH
Confidence 1211 111 111111 3588999999999999999999999998876531 125799999999999999
Q ss_pred HHHhcCCCCCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEE-EecCCCCCccceEEEEEccCC-----C
Q 008915 264 VKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE-AFPAGSGPLDRTTYMFTYIDP-----Q 337 (549)
Q Consensus 264 rrql~~~~~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~-~fP~~~g~~~~~~~l~~~~~~-----~ 337 (549)
|+++.....+...........-+.... ...+-+...+. ..+++|. .||..++ ...+++...+. .
T Consensus 144 R~~~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~------~~g~~~~~~y~~~~~---~~~~~~~~~~~~~~~~~ 213 (765)
T PRK08255 144 RTRYADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEET------EHGWFQAHAYRFDDD---TSTFIVETPEEVWRAAG 213 (765)
T ss_pred HHHHHhhcCCceecCCCceEEecCCCc-ccceeEEEEec------CCceEEEEEeeeCCC---CcEEEEEcCHHHHHhcC
Confidence 998643211110000000001111100 00000000000 1233331 4666544 23333333210 0
Q ss_pred C---Ccc-cHHHHHHHHHHhCcccccccCCceeE-eeeeeeeeccccCCCCCccCCc----EEEeCCCCCCCCCCCCCch
Q 008915 338 A---GSP-KLEELLERYWDLMPEYQGVTLDNLEI-QRVIYGIFPTYRDSPLPAAFNR----ILQFGDASGIQSPVSFGGF 408 (549)
Q Consensus 338 ~---~~~-~L~~l~~~~~~~lp~~~~~~l~~~~~-~r~~~g~~P~~~~~~~~~~~~r----vlLVGDAA~~v~Pltg~G~ 408 (549)
. ... ..+.+.+.|-...+....+ ..... ....+..++. ....++..+| ++|+|||||.++|..|||.
T Consensus 214 ~~~~~~~~~~~~l~~~f~~~~~~~~li--~~~~~~~~~~w~~~~~--~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~ 289 (765)
T PRK08255 214 LDEMSQEESIAFCEKLFADYLDGHPLM--SNASHLRGSAWINFPR--VVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGT 289 (765)
T ss_pred CccCCHHHHHHHHHHHhHHhcCCCccc--ccccccccceeeecce--eccCCCccCCCcccEEEEEcCcccCCCCcchhH
Confidence 0 011 2223333333333322111 11100 0000111111 1223566778 9999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhh
Q 008915 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (549)
Q Consensus 409 g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~ 443 (549)
|++++|+..|++.|.... . .....|+.|+
T Consensus 290 ~~aieDa~~La~~L~~~~--~----~~~~al~~ye 318 (765)
T PRK08255 290 KLALEDAIELARCLHEHP--G----DLPAALAAYE 318 (765)
T ss_pred HHHHHHHHHHHHHHHHcc--c----cHHHHHHHHH
Confidence 999999999999886531 1 1234567888
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-17 Score=163.46 Aligned_cols=297 Identities=18% Similarity=0.203 Sum_probs=166.9
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCCCCccccCCHHHHHHHHHcCCCCcc-cchhhhhhccCCCc
Q 008915 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEWNISRKELLELVESGILVED-DIDEATATKFNPNR 183 (549)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~~~r~~~IS~~~l~~L~~lGl~~~~-eie~~i~~~~~~~~ 183 (549)
.+.++||||||+| +|+++|++|+|.|.||.||||.- .|.+.-..-+.++....|.+||+-+.. +|+...+..|
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy---- 117 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGY---- 117 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeee----
Confidence 4557999999977 59999999999999999999974 232221223566777889999986431 2333323222
Q ss_pred ccccCCcccccc--------ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc--CCc--EEEc
Q 008915 184 CGFEGKGEIWVE--------DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSS 250 (549)
Q Consensus 184 i~f~~~~~l~~~--------~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~--dG~--~i~A 250 (549)
.-|.++++...+ +.-+..+.+.+|.+.|++++.+....-+++-+|+++..+++-++ |+.+ .|+ +..|
T Consensus 118 ~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~A 197 (509)
T KOG1298|consen 118 AIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFA 197 (509)
T ss_pred EEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEec
Confidence 112222221111 12245678889999999999887665556667888866665222 3333 333 7899
Q ss_pred CEEEEccCCChHHHHHhcCCCCCCceeeEEeEeeec--cCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceE
Q 008915 251 HLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328 (549)
Q Consensus 251 rlVI~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g--~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~ 328 (549)
.|-|.|||-.|.+||.+.-.....-....+|.+..+ .+....++++.+. |.. +- .||.+.. +. .
T Consensus 198 pLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~-psp---------il-~Y~ISSt--Ev-R 263 (509)
T KOG1298|consen 198 PLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILSK-PSP---------IL-VYQISST--EV-R 263 (509)
T ss_pred ceEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEecC-CCc---------EE-EEEecch--he-E
Confidence 999999999999999986432211001123333322 2233345665542 211 11 4565543 12 2
Q ss_pred EEEEccCC-CCC--cccHHHHHHHHH-HhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCC
Q 008915 329 YMFTYIDP-QAG--SPKLEELLERYW-DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS 404 (549)
Q Consensus 329 ~l~~~~~~-~~~--~~~L~~l~~~~~-~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plt 404 (549)
.++.+... -+. +..+.+.+.+-. -..|+--+-.+-.. +........|..+..+......+++++|||-.+-||++
T Consensus 264 cl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~a-v~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPlt 342 (509)
T KOG1298|consen 264 CLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEA-VDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLT 342 (509)
T ss_pred EEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHH-hhccchhcCccccCCCCcCCCCceEEEcccccccCCcc
Confidence 23333220 010 101222221111 11111000000000 00001123455544444556789999999999999999
Q ss_pred CCchhhHHHHHHHHHHHH
Q 008915 405 FGGFGSLTRHLGRLSTGV 422 (549)
Q Consensus 405 g~G~g~~lrd~~~La~~i 422 (549)
|+|+-.++-|+..|-..|
T Consensus 343 ggGMtV~l~Di~lLr~ll 360 (509)
T KOG1298|consen 343 GGGMTVALSDIVLLRRLL 360 (509)
T ss_pred CCceEeehhHHHHHHHHh
Confidence 999999998877666554
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=124.88 Aligned_cols=133 Identities=24% Similarity=0.318 Sum_probs=92.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccc---------cCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEW---------NISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~---------~IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
+|||+||||| +|+++|+.|++.|++|+|+||...++.. .| .+.......|.++|+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg-~~~gg~~~~~~~v~~~~~~~l~~~gv~------------- 90 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG-MWGGGMLFNKIVVQEEADEILDEFGIR------------- 90 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccCccccccccchHHHHHHHHHCCCC-------------
Confidence 6999999965 6999999999999999999998765421 11 1111122233333321
Q ss_pred CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EE---EEEEc---------CCc
Q 008915 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLLA---------EGK 246 (549)
Q Consensus 180 ~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv---~V~~~---------dG~ 246 (549)
|... .+. .+.+++..+...|.+++.+.|++++.+++|+++..+++ .+ ++... +..
T Consensus 91 ------~~~~----~~g--~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~ 158 (257)
T PRK04176 91 ------YKEV----EDG--LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPL 158 (257)
T ss_pred ------ceee----cCc--ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcE
Confidence 1000 000 13468889999999999999999999999999987666 22 22210 124
Q ss_pred EEEcCEEEEccCCChHHHHHhc
Q 008915 247 ILSSHLIIDAMGNFSPVVKQIR 268 (549)
Q Consensus 247 ~i~ArlVI~ADG~~S~vrrql~ 268 (549)
+++||+||+|+|++|.+.+.+.
T Consensus 159 ~i~Ak~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 159 TIEAKAVVDATGHDAEVVSVLA 180 (257)
T ss_pred EEEcCEEEEEeCCCcHHHHHHH
Confidence 7999999999999999998763
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=122.04 Aligned_cols=132 Identities=27% Similarity=0.430 Sum_probs=90.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc---------CCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~---------IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
+|||+||||| +|+++|+.|+++|++|+||||+..++.. .|. +.....+.+.++|+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg-~~~gg~~~~~~~~~~~~~~~l~~~gi-------------- 85 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG-SWGGGMLFSKIVVEKPAHEILDEFGI-------------- 85 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc-ccCCCcceecccccchHHHHHHHCCC--------------
Confidence 6999999965 6999999999999999999999876522 121 00011112222221
Q ss_pred CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE--EE-EEEc-----------CC
Q 008915 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AV-LLLA-----------EG 245 (549)
Q Consensus 180 ~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~-V~~~-----------dG 245 (549)
.+.... . ..+..++..+.+.|.+++.+.|++++.+++++++..++++ +. |.++ +.
T Consensus 86 -----~~~~~~-----~-g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~ 154 (254)
T TIGR00292 86 -----RYEDEG-----D-GYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDP 154 (254)
T ss_pred -----Ceeecc-----C-ceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCC
Confidence 111000 0 0123577789999999999999999999999999887762 21 2221 12
Q ss_pred cEEEcCEEEEccCCChHHHHHh
Q 008915 246 KILSSHLIIDAMGNFSPVVKQI 267 (549)
Q Consensus 246 ~~i~ArlVI~ADG~~S~vrrql 267 (549)
.+++|++||+|+|+.|++.+.+
T Consensus 155 ~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 155 LTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred EEEEcCEEEEeecCCchHHHHH
Confidence 3799999999999999998876
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-10 Score=116.37 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=57.7
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChHH-HHHhc
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV-VKQIR 268 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~v-rrql~ 268 (549)
..+++..+.+.|.+.+++.|++++.+++|+++..++++++ |.+++|+ ++|+.||.|.|.+|.- .+.++
T Consensus 142 g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~ 211 (358)
T PF01266_consen 142 GVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLG 211 (358)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTT
T ss_pred ccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeeccc
Confidence 4589999999999999999999999999999999999998 9998887 9999999999999874 44443
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-11 Score=116.38 Aligned_cols=131 Identities=26% Similarity=0.374 Sum_probs=83.7
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCCCCcccc---------CCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~---------IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
+|||+|||| ++|+++|..||++|+||+++||+..++.. .|. +.......|+++|+-
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg-~~~Gg~lf~~iVVq~~a~~iL~elgi~------------- 82 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG-MWGGGMLFNKIVVQEEADEILDELGIP------------- 82 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT-TTS-CTT---EEEETTTHHHHHHHT---------------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc-ccccccccchhhhhhhHHHHHHhCCce-------------
Confidence 699999995 56999999999999999999998766521 121 111122333333321
Q ss_pred CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEEC-CE---EEEEEc---------CCc
Q 008915 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA---AVLLLA---------EGK 246 (549)
Q Consensus 180 ~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dg---v~V~~~---------dG~ 246 (549)
+... .+ .-+..|...+-..|..++.++|++++..+.|+++...+ +. +++... |--
T Consensus 83 ------y~~~-----~~-g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl 150 (230)
T PF01946_consen 83 ------YEEY-----GD-GYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL 150 (230)
T ss_dssp -------EE------SS-EEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred ------eEEe-----CC-eEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence 1100 01 11456788888999999999999999999999999887 43 333332 123
Q ss_pred EEEcCEEEEccCCChHHHHH
Q 008915 247 ILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 247 ~i~ArlVI~ADG~~S~vrrq 266 (549)
+++|++||||+|+.+++.+.
T Consensus 151 ~i~ak~ViDaTGHda~v~~~ 170 (230)
T PF01946_consen 151 TIRAKVVIDATGHDAEVVRV 170 (230)
T ss_dssp EEEESEEEE---SSSSSTSH
T ss_pred eEEEeEEEeCCCCchHHHHH
Confidence 89999999999999876543
|
|
| >PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=114.52 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=105.0
Q ss_pred EcCEEEEccCCChHHHHHhcCCCCCCceeeEEeEeeec--cCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccc
Q 008915 249 SSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (549)
Q Consensus 249 ~ArlVI~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g--~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (549)
.|+++|.|||..|.+|+++. ..++.-....+|...++ .+....++++... .+.++ .|+.+.. -
T Consensus 1 ~A~LtivaDG~~S~fRk~l~-~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~----------~~pil-~YqI~~~---e 65 (276)
T PF08491_consen 1 FAPLTIVADGCFSKFRKELS-DNKPQVRSYFVGLILKDAPLPKPNHGHVILGK----------PGPIL-LYQISSN---E 65 (276)
T ss_pred CCCEEEEecCCchHHHHhhc-CCCCceeeeEEEEEEcCCCCCCCCceEEEEcC----------CCcEE-EEEcCCC---c
Confidence 37899999999999999987 33333333344544432 2344567776643 12344 6777654 2
Q ss_pred eEEEEEccCC-CCC--cccHHHHHHHH-HHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCC
Q 008915 327 TTYMFTYIDP-QAG--SPKLEELLERY-WDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402 (549)
Q Consensus 327 ~~~l~~~~~~-~~~--~~~L~~l~~~~-~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~P 402 (549)
+..++.+... .+. +.++++.+.+. .-.+|+--+..+... +........|.....+.....++++++|||+++.||
T Consensus 66 tR~Lvdvp~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~a-l~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHP 144 (276)
T PF08491_consen 66 TRVLVDVPGPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKA-LEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHP 144 (276)
T ss_pred eEEEEEeCCCccCCccchHHHHHHHHHHHhhchHHHHHHHHHH-hccCCcceecccccCCCCCCCCCEEEEehhhcCcCC
Confidence 4445544432 111 22555555433 233443211111000 011112346666655556677999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCCCC-h-hhhHhhhhhh
Q 008915 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVD-S-YSLSLLNPYM 443 (549)
Q Consensus 403 ltg~G~g~~lrd~~~La~~i~~Al~~g~l~-~-~~l~~L~~Y~ 443 (549)
+||||+..++.|+..|++.|... .+++ . .-.+.++.|.
T Consensus 145 LTGgGMTVAl~Dv~lL~~lL~~~---~dl~d~~~v~~~l~~f~ 184 (276)
T PF08491_consen 145 LTGGGMTVALNDVVLLRDLLSPI---PDLSDTKAVLEALKKFH 184 (276)
T ss_pred ccccchhhHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHH
Confidence 99999999999999999988776 2222 2 2244567776
|
SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=110.32 Aligned_cols=132 Identities=27% Similarity=0.371 Sum_probs=92.5
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCCCCcccc---------CCHHHHHHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~---------IS~~~l~~L~~lGl~~~~eie~~i~~~~ 179 (549)
+-||||||+ |.|+++|+.||++|+||+++||+-.++- ..|. +-...-+.|+++|+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG-G~w~GGmlf~~iVv~~~a~~iL~e~gI-------------- 94 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG-GIWGGGMLFNKIVVREEADEILDEFGI-------------- 94 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC-cccccccccceeeecchHHHHHHHhCC--------------
Confidence 579999995 5699999999999999999999876542 1121 10111223333332
Q ss_pred CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-E---EEEEEc---------CCc
Q 008915 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-A---AVLLLA---------EGK 246 (549)
Q Consensus 180 ~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-g---v~V~~~---------dG~ 246 (549)
.+...+ +. -++.|+..+-..|..++.++|++|+..+.|+++...++ + +++... |--
T Consensus 95 -----~ye~~e-----~g-~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl 163 (262)
T COG1635 95 -----RYEEEE-----DG-YYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPL 163 (262)
T ss_pred -----cceecC-----Cc-eEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcc
Confidence 111000 10 14567788888999999999999999999999988777 3 333321 234
Q ss_pred EEEcCEEEEccCCChHHHHHh
Q 008915 247 ILSSHLIIDAMGNFSPVVKQI 267 (549)
Q Consensus 247 ~i~ArlVI~ADG~~S~vrrql 267 (549)
+++|++||||+|+.-++.+-+
T Consensus 164 ~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 164 TIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred eeeEEEEEeCCCCchHHHHHH
Confidence 899999999999999888655
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-09 Score=109.63 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=59.0
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC-hHHHHHhcCCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF-SPVVKQIRSGR 271 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~-S~vrrql~~~~ 271 (549)
..+++..+.+.|.+++.+.|++++.+++|+++..+++.+.|.++++ +++|+.||.|.|.. |.+++.++...
T Consensus 140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~ 211 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEI 211 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCC
Confidence 4579999999999999989999999999999998888888877555 79999888888876 56777776543
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.1e-09 Score=114.85 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=56.2
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC----cEEEcCEEEEccCCChH-HHHHh
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLIIDAMGNFSP-VVKQI 267 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG----~~i~ArlVI~ADG~~S~-vrrql 267 (549)
.+++..+...+.+.+.+.|++++..++|+++..+++.+.|++.++ .+++|+.||.|+|.+|. +++++
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 222 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRV 222 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhc
Confidence 478899999999999999999999999999988877777776554 26999999999999986 54433
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=119.47 Aligned_cols=157 Identities=23% Similarity=0.280 Sum_probs=101.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-------ccccCCHHHH--HHHHHcCCCCcccchhhhhhcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-------QEWNISRKEL--LELVESGILVEDDIDEATATKF 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-------r~~~IS~~~l--~~L~~lGl~~~~eie~~i~~~~ 179 (549)
.+|||||||| +|+++|..++++|.+|+|||+.+-++++ |+ |++..+. +.+.+.+=-. .-+...+ .+|
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrC-N~Tn~~~~~~~ls~~p~~~-~fl~sal-~~f 79 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRC-NFTNSEAPDEFLSRNPGNG-HFLKSAL-ARF 79 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCc-cccccccHHHHHHhCCCcc-hHHHHHH-HhC
Confidence 6999999975 6999999999999999999999876643 22 4432211 1122211000 0001110 112
Q ss_pred CCCc-ccccC--Cccccccccccc----eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCE
Q 008915 180 NPNR-CGFEG--KGEIWVEDILNL----GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (549)
Q Consensus 180 ~~~~-i~f~~--~~~l~~~~~l~~----~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~Arl 252 (549)
.+.. +.|-. +..++.. ..+. .-....+.++|..++++.|++++.+++|.++..++++..|.+++|++++|+-
T Consensus 80 t~~d~i~~~e~~Gi~~~e~-~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEE-DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred CHHHHHHHHHhcCCeeEEc-cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 1110 01100 1111111 1121 1345678899999999999999999999999999889999998998999999
Q ss_pred EEEccCCCh-----------HHHHHhcCC
Q 008915 253 IIDAMGNFS-----------PVVKQIRSG 270 (549)
Q Consensus 253 VI~ADG~~S-----------~vrrql~~~ 270 (549)
||-|+|..| ++++|+|..
T Consensus 159 lilAtGG~S~P~lGstg~gy~iA~~~G~~ 187 (408)
T COG2081 159 LILATGGKSWPKLGSTGFGYPIARQFGHT 187 (408)
T ss_pred EEEecCCcCCCCCCCCchhhHHHHHcCCc
Confidence 999999776 567777654
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-08 Score=113.07 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=54.5
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---Cc--EEEcCEEEEccCCChH-HHHH
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSP-VVKQ 266 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d---G~--~i~ArlVI~ADG~~S~-vrrq 266 (549)
.+|+..|...+.+.+.+.|++++.+++|+++..+++.+.|++.+ |+ +++|+.||.|+|.+|. +.++
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~ 222 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDD 222 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhh
Confidence 37888888888888889999999999999998877777776653 43 7999999999999986 4443
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-08 Score=105.74 Aligned_cols=304 Identities=20% Similarity=0.222 Sum_probs=162.3
Q ss_pred CCcccEEEEcc-hHHHHHHHHHH------hCCCcEEEEccCCCCCCCcc--ccCCHHHHHHHHHcCCCCc--ccchhhhh
Q 008915 108 VGTFDVIVCGG-TLGIFIATALS------FKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVE--DDIDEATA 176 (549)
Q Consensus 108 ~~~yDVIIVGG-g~G~~~Aa~LA------r~GlrVlLIEr~~~~~~~r~--~~IS~~~l~~L~~lGl~~~--~eie~~i~ 176 (549)
.+.|||+|||| |+|+++|+.|. .+-+||+|+||+..++.+-- --|-+..+.+|. -=|.+ .++...+.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~--P~wke~~apl~t~vT 151 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELL--PDWKEDGAPLNTPVT 151 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhC--cchhhcCCccccccc
Confidence 34799999996 57999998663 23789999999988764310 012223333331 01111 11221111
Q ss_pred hccCCCccccc-CCcc------ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE--cC---
Q 008915 177 TKFNPNRCGFE-GKGE------IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AE--- 244 (549)
Q Consensus 177 ~~~~~~~i~f~-~~~~------l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~d--- 244 (549)
+ ..+.|- ++.. ....+.-||+|+-..|.++|.++|.+.|++|+.+..+.++..++|+.+..+ +|
T Consensus 152 ~----d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI 227 (621)
T KOG2415|consen 152 S----DKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGI 227 (621)
T ss_pred c----cceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccc
Confidence 1 111111 0111 122233478899999999999999999999999999999988888755433 22
Q ss_pred ------------CcEEEcCEEEEccCCChHHHHHhcCCCCCCcee--eEEeE----eeeccC--CCceeeeeecCC-ccc
Q 008915 245 ------------GKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--LVVGS----CARGFK--DNSTSDVIYSSS-SVK 303 (549)
Q Consensus 245 ------------G~~i~ArlVI~ADG~~S~vrrql~~~~~~~~~~--~~vg~----~~~g~~--~~~~~ei~~~~~-~~~ 303 (549)
|-++.|+.-|-|.|-+--+.+|+-.....+.-| .+.|. +++ ++ +...+++.-..+ |+.
T Consensus 228 ~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWe-i~~~~~~pG~v~HT~GwPl~ 306 (621)
T KOG2415|consen 228 SKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWE-IDPENHNPGEVAHTLGWPLD 306 (621)
T ss_pred cCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEe-cChhhcCCcceeeeccCccc
Confidence 237999999999999888888753221111000 01111 111 11 112222211111 111
Q ss_pred ccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCcc--cHHHHHHHHHHhCcccccccCCceeEeeeeeeeecc---c
Q 008915 304 KVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP--KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPT---Y 378 (549)
Q Consensus 304 ~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~--~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~---~ 378 (549)
+ +...+-| .|-..+. ..+..+.. ...-.+| +.-+.|+++ ...|.++.+ ++.-+ +..+|...+ .
T Consensus 307 ~--~tYGGsF--lYh~~d~---~VavGlVV-gLdY~NP~lsP~~EFQk~-K~hP~i~~v-leGgk--~i~YgARaLNEGG 374 (621)
T KOG2415|consen 307 N--DTYGGSF--LYHFNDP---LVAVGLVV-GLDYKNPYLSPYKEFQKM-KHHPSISKV-LEGGK--RIAYGARALNEGG 374 (621)
T ss_pred C--CccCcee--EEEcCCC---eEEEEEEE-EecCCCCCCCHHHHHHHh-hcCcchhhh-hcCcc--eeeehhhhhccCC
Confidence 1 0011112 1223322 22221111 1111223 223333333 456777765 33322 222222111 1
Q ss_pred cCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCC
Q 008915 379 RDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF 430 (549)
Q Consensus 379 ~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~ 430 (549)
+++-.+..+++=+|||=+|++++---=-|-..+|......||.|-+|++...
T Consensus 375 fQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~ 426 (621)
T KOG2415|consen 375 FQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLP 426 (621)
T ss_pred cccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCc
Confidence 2233366778889999999998755556777777776667888999997654
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-08 Score=106.28 Aligned_cols=69 Identities=10% Similarity=0.001 Sum_probs=52.0
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CCEE-EEEEcCCcEEEcC-EEEEccCCChHHHHHhcCC
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA-VLLLAEGKILSSH-LIIDAMGNFSPVVKQIRSG 270 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv-~V~~~dG~~i~Ar-lVI~ADG~~S~vrrql~~~ 270 (549)
.+++..+...|.+.+.+.|++++++++|+++... ++.+ .|.+++| +++|+ +||+|+|..|.+++.++..
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~ 250 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR 250 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC
Confidence 4678888888899999999999999999999764 3443 3666566 68887 5566677667777766554
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-09 Score=111.14 Aligned_cols=159 Identities=21% Similarity=0.247 Sum_probs=103.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCC--CcEEEEccCCCCCCCc----------cccCCHH-------------HHHHHHHc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQ----------EWNISRK-------------ELLELVES 163 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~G--lrVlLIEr~~~~~~~r----------~~~IS~~-------------~l~~L~~l 163 (549)
+|||+||||| +|+++|..|++.+ ++|+||||...++... ..+-.++ ..+..+++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~ 82 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL 82 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 6999999987 5999999999998 9999999998754210 0100111 12223333
Q ss_pred CC-----------CCcccchhhhhhcc-----CCCc-ccccCC------cc---------ccccccccceeCHHHHHHHH
Q 008915 164 GI-----------LVEDDIDEATATKF-----NPNR-CGFEGK------GE---------IWVEDILNLGVSPAKLIEIV 211 (549)
Q Consensus 164 Gl-----------~~~~eie~~i~~~~-----~~~~-i~f~~~------~~---------l~~~~~l~~~V~~~~L~~~L 211 (549)
++ +.+++++.+- ..| ++-. +...+. .+ ++.+. +..|++..+-..|
T Consensus 83 ~~~f~~~g~l~vA~~e~e~~~L~-~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~--~giV~~~~~t~~l 159 (429)
T COG0579 83 GIPFINCGKLSVATGEEEVERLE-KLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPS--GGIVDPGELTRAL 159 (429)
T ss_pred CCcccccCeEEEEEChHHHHHHH-HHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCC--CceEcHHHHHHHH
Confidence 31 1112221111 111 1111 111110 11 11111 3458999999999
Q ss_pred HHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcE-EEcCEEEEccCCChH-HHHHhcCCC
Q 008915 212 KKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSP-VVKQIRSGR 271 (549)
Q Consensus 212 ~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~-i~ArlVI~ADG~~S~-vrrql~~~~ 271 (549)
.+.+.+.|+++..+++|+++..++|+ ..+.+.+|++ ++||.||.|-|..|- +++..+.+.
T Consensus 160 ~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 160 AEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence 99999999999999999999999994 5666777766 999999999998875 777776654
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.7e-09 Score=108.77 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=54.0
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.+++..+...+.+.+.+.|++++++++|+++..+++++.|.+++| +++|+.||.|+|..|.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 478888888888888888999999999999998888888887666 7999999999999865
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=114.97 Aligned_cols=148 Identities=24% Similarity=0.322 Sum_probs=74.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-------ccccCCHHHH--HHH-HHcCCCCcccchhhhhhcc
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-------QEWNISRKEL--LEL-VESGILVEDDIDEATATKF 179 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-------r~~~IS~~~l--~~L-~~lGl~~~~eie~~i~~~~ 179 (549)
|||+||||| +|+++|+.+|+.|.+|+|+||+..++.+ |+ |++.... ..+ ...+- ...-+...+ ..|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrC-N~tn~~~~~~~~~~~~~~-~~~f~~~~l-~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRC-NLTNLNIDPSEFLSGYGR-NPKFLKSAL-KRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT--EEEETTSSGGGEECS-TB-TTTCTHHHH-HHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCc-cccccccchhhHhhhccc-chHHHHHHH-hcC
Confidence 899999975 5999999999999999999999876531 11 2221000 000 00000 000000000 011
Q ss_pred CCCc-ccccC--Cccccc-cc--cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCE
Q 008915 180 NPNR-CGFEG--KGEIWV-ED--ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHL 252 (549)
Q Consensus 180 ~~~~-i~f~~--~~~l~~-~~--~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~Arl 252 (549)
++.. +.|.. +-+... ++ ++...-....+.++|.+.+.+.|++++.+++|+++..++++ +.|.++++.++.||-
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 0000 00000 000000 00 01111234567889999999999999999999999998888 778886777999999
Q ss_pred EEEccCCCh
Q 008915 253 IIDAMGNFS 261 (549)
Q Consensus 253 VI~ADG~~S 261 (549)
||-|+|..|
T Consensus 158 vILAtGG~S 166 (409)
T PF03486_consen 158 VILATGGKS 166 (409)
T ss_dssp EEE----SS
T ss_pred EEEecCCCC
Confidence 999999876
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.6e-09 Score=115.68 Aligned_cols=145 Identities=17% Similarity=0.180 Sum_probs=88.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCCCCccc----cCCHH-HHHHHHHcCCCCcccchhhhhhccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEW----NISRK-ELLELVESGILVEDDIDEATATKFNPN 182 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~~~r~~----~IS~~-~l~~L~~lGl~~~~eie~~i~~~~~~~ 182 (549)
+||||||||| +|+.+|+++|+.|.+|+|||++. ..+...+. .+..+ -+..+..+|-.....++... ..+.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~g-iq~r-- 80 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTG-IQFR-- 80 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhcc-Ccee--
Confidence 6999999976 68899999999999999999874 22211110 11111 12334444421000001100 0010
Q ss_pred cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCC
Q 008915 183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 183 ~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~ 260 (549)
......+...+.+ ...+|+..+.+.+.+.+.+. |++++ .++|+++..+++.+. |.+.+|..+.|+.||+|+|.+
T Consensus 81 ~ln~skGpAV~s~---RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 81 MLNTSKGPAVRAL---RAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred ecccCCCCceeCc---HHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 0000001112221 13588988999999888876 56775 567899887777655 777788899999999999976
Q ss_pred h
Q 008915 261 S 261 (549)
Q Consensus 261 S 261 (549)
+
T Consensus 157 L 157 (618)
T PRK05192 157 L 157 (618)
T ss_pred h
Confidence 5
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=107.79 Aligned_cols=70 Identities=20% Similarity=0.182 Sum_probs=60.1
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH-HHHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|.+++| +++|+.||.|+|.+|+ +++.++..
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 4578999999999999999999999999999988888888887666 7999999999999995 66666643
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-08 Score=108.51 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=56.5
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEc---CC--cEEEcCEEEEccCCChH-HHHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLA---EG--KILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~---dG--~~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
..||+..+.+.|.+.+++.|++++++++|+++..+++ ++.|++. +| .+++|+.||.|.|.+|. +++.++..
T Consensus 173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 3589999999999999999999999999999988654 5666542 23 26999999777777664 77777765
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=112.02 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=55.8
Q ss_pred ceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCE-EEEEEc---CCc--EEEcCEEEEccCCCh-HHHHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENA-AVLLLA---EGK--ILSSHLIIDAMGNFS-PVVKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dg-v~V~~~---dG~--~i~ArlVI~ADG~~S-~vrrql~~~ 270 (549)
..||+..+.+.|.+.+++.| ++++++++|+++..++++ +.|.+. +|+ +++|+.||.|.|.+| .+++.+++.
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 46899999999999998887 699999999999886665 666543 353 699998877777665 477777665
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-10 Score=123.56 Aligned_cols=149 Identities=20% Similarity=0.263 Sum_probs=29.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcc--c--cCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQE--W--NISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~--~--~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
|||||||| +|+++|+++|+.|.||+||||....+.... . .+..........-|++ +++...-...+....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~-----~e~~~~~~~~~~~~~ 75 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIF-----REFLNRLRARGGYPQ 75 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHH-----HHHHHST--------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHH-----HHHHHHHhhhccccc
Confidence 89999976 588899999999999999999998763210 0 0000000000000110 011100000000000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc--CC-cEEEcCEEEEccCCChH
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EG-KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~--dG-~~i~ArlVI~ADG~~S~ 262 (549)
. ...-+. -.+.+++..+...|.+.+.++|++++.++.|+++..+++.++ |.+. +| .+++|+++|||+|.. -
T Consensus 76 ~-~~~~~~---~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g-~ 150 (428)
T PF12831_consen 76 E-DRYGWV---SNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDG-D 150 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-cccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 0 000000 013567778888888888888999999999999998775432 3333 34 489999999999964 4
Q ss_pred HHHHhcCC
Q 008915 263 VVKQIRSG 270 (549)
Q Consensus 263 vrrql~~~ 270 (549)
++...|.+
T Consensus 151 l~~~aG~~ 158 (428)
T PF12831_consen 151 LAALAGAP 158 (428)
T ss_dssp --------
T ss_pred cccccccc
Confidence 55555543
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=115.24 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=55.3
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.+++..+.+.|.+.+.+ |++++.+++|+++..++++++|.+++|..++|+.||.|+|..|.
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 47899999999999988 99999999999999888888888877777899999999999985
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-08 Score=105.93 Aligned_cols=67 Identities=19% Similarity=0.100 Sum_probs=55.5
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC-----cEEEcCEEEEccCCChH-HHHHhc
Q 008915 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIIDAMGNFSP-VVKQIR 268 (549)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG-----~~i~ArlVI~ADG~~S~-vrrql~ 268 (549)
+++..+...|.+.+.+.|++++++++|+++..+++++++.+.++ .+++|+.||.|.|.+|. +.+.++
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG 266 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence 67888888999999999999999999999988888877765432 37999999999999985 555554
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8e-08 Score=105.44 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=58.9
Q ss_pred ceeCHHHHHHHHHHHHHh----cC--CEEEeCceEEEEEEE-CCEEEEEEcCCcEEEcCEEEEccCCChH-HHHHhcCCC
Q 008915 200 LGVSPAKLIEIVKKRFIS----LG--GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSGR 271 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~----~G--~~v~~~t~v~~i~~~-~dgv~V~~~dG~~i~ArlVI~ADG~~S~-vrrql~~~~ 271 (549)
..||+..+.+.|.+.+++ .| ++++++++|+++..+ ++.+.|++++| +++|+.||-|.|.+|. +++.++.+.
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~~ 284 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYGL 284 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCCC
Confidence 358999999999999988 77 678999999999887 44577887666 6999999999999985 777777643
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.3e-07 Score=95.17 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=54.7
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChH-HHHHhc
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIR 268 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~-vrrql~ 268 (549)
.+++..+.+.|.+.+.+.|++++++++|++++.+++++. |+++ +.+++|+.||.|.|.+|. +.+.++
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g 265 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLG 265 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhC
Confidence 468888999999999999999999999999988777754 5554 447999999999999985 444443
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-08 Score=108.64 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=55.3
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CC--cEEEcCEEEEccCCChH-HHHHhc
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIR 268 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG--~~i~ArlVI~ADG~~S~-vrrql~ 268 (549)
..||+..|...+...+.+.|++++.+++|+++..+++.++ |++. ++ .+|+|+.||-|.|.+|. +.+.++
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g 219 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD 219 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcC
Confidence 3589999999999999999999999999999988776543 4432 23 37999999999999986 555444
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-08 Score=103.61 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=82.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEE-ccCCCCCCCcc----ccCCHHH-HHHHHHcCCCCcccchhhhhhccCCCcc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIV-ERNTLKGREQE----WNISRKE-LLELVESGILVEDDIDEATATKFNPNRC 184 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLI-Er~~~~~~~r~----~~IS~~~-l~~L~~lGl~~~~eie~~i~~~~~~~~i 184 (549)
|||||||| +|+.+|+++|+.|.+|+|+ ++........+ -.+..+. ..+++.+|-+ +-.+ .+....++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~----m~~~--aD~~~i~~ 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGL----MGRA--ADETGIHF 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-S----HHHH--HHHHEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhH----HHHH--HhHhhhhh
Confidence 89999987 5999999999999999999 33322221111 1233332 2455556522 1111 11101111
Q ss_pred cccC--Cc-cccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCC
Q 008915 185 GFEG--KG-EIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 185 ~f~~--~~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~ 259 (549)
...+ +. ..+ .+-..+|+..+.+.+.+.+.+.+. +++ .++|+++..+++.+. |.+.+|.++.||.||.|+|.
T Consensus 75 ~~lN~skGpav~---a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 75 RMLNRSKGPAVH---ALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEESTTS-GGCT---EEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hcccccCCCCcc---chHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 1111 11 111 122479999999999999988655 665 678999998887665 77778999999999999999
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.7e-07 Score=100.68 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=54.0
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEEC--CEEE-EEE---cCCc--EEEcCEEEEccCCChH-HHHHhc
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAV-LLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIR 268 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dgv~-V~~---~dG~--~i~ArlVI~ADG~~S~-vrrql~ 268 (549)
.+|+..+...|.+.+.+.|++++.+++|+++..++ +.+. |.+ .+++ +++|+.||.|.|.+|. +++.++
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 47999999999999999999999999999998763 4332 333 2343 6899999999999987 665554
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=97.53 Aligned_cols=134 Identities=17% Similarity=0.255 Sum_probs=76.1
Q ss_pred EEEcc-hHHHHHHHHHHhCCCc-EEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC---cccccC
Q 008915 114 IVCGG-TLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN---RCGFEG 188 (549)
Q Consensus 114 IIVGG-g~G~~~Aa~LAr~Glr-VlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~---~i~f~~ 188 (549)
+|||| +.|+++|+.|.++|++ |+||||+..++. .|.-... ...+.+..... ..+... .+.+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg--~w~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~ 68 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGG--VWRRYYS------YTRLHSPSFFS----SDFGLPDFESFSFDD 68 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTT--HHHCH-T------TTT-BSSSCCT----GGSS--CCCHSCHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCC--eeEEeCC------CCccccCcccc----ccccCCccccccccc
Confidence 68885 5699999999999999 999999976552 2321000 01111100000 000000 000000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.+-+ .....-.....+.+.|.+.+.+.+.+++.+++|+++..+++++.|+++++++++|+.||.|+|..|.
T Consensus 69 -~~~~--~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 69 -SPEW--RWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp -HHHH--HHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred -CCCC--CCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 0000 0001124556677888888888888999999999999999999999988888999999999998653
|
... |
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-08 Score=106.99 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=52.0
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+++.++...|.+.+++.|++++++++|++++. ++.+.|++.+| +++|+.||.|.|.+|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 4589999999999999999999999999999975 45566777666 6999999999998864
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-06 Score=95.68 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=55.6
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---Cc--EEEcCEEEEccCCChH-HHHHh
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSP-VVKQI 267 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d---G~--~i~ArlVI~ADG~~S~-vrrql 267 (549)
+.+|..+|.-.....+.+.|++++..++|+++..+++-+-|.+.| |+ +++|+.||-|.|.++- +++..
T Consensus 159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred ceechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence 568888898888888889999999999999999988833455544 33 6999999999999997 44444
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-07 Score=100.30 Aligned_cols=202 Identities=16% Similarity=0.193 Sum_probs=110.7
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChHHH-HHhcCCCC--CCc
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV-KQIRSGRK--PDG 275 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~vr-rql~~~~~--~~~ 275 (549)
-.+||.-+-++|...|++.|+.|.+++.|+++....+. +-|++..|. |+|..+|.|.|.+.... +..+...+ +-+
T Consensus 182 G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~ 260 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAREVGAMAGVKVPLVPMH 260 (856)
T ss_pred cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHHHhhhhcCCcccceeee
Confidence 45899999999999999999999999999999876654 457766664 99999999999987533 33332222 111
Q ss_pred eeeEEeEeeeccCCCce-------eeeeec-------CCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCcc
Q 008915 276 VCLVVGSCARGFKDNST-------SDVIYS-------SSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP 341 (549)
Q Consensus 276 ~~~~vg~~~~g~~~~~~-------~ei~~~-------~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~ 341 (549)
..-++....+|...... +.+++. .+..+. ..++|+.-|... ...++ +++-.
T Consensus 261 H~YvvT~~IeGi~s~t~p~irD~DgSvylR~~~~gil~GGyE~-----n~i~~egv~~~~-----~~~lq-----E~DWd 325 (856)
T KOG2844|consen 261 HAYVVTSRIEGVSSLTRPNIRDLDGSVYLRQQGDGILFGGYES-----NPIFTEGVPPGF-----ATGLQ-----EPDWD 325 (856)
T ss_pred eeEEEecccCCccCCCccceecccceEEEEecCCceecccccc-----CceeccccCCcc-----ccccc-----cccHh
Confidence 11122222222211000 001110 011110 112222111110 00111 12222
Q ss_pred cHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchh-hHHHHHHHHHH
Q 008915 342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFG-SLTRHLGRLST 420 (549)
Q Consensus 342 ~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g-~~lrd~~~La~ 420 (549)
-.....+....+.|.++++++.++ +. .+..+.-|..-++|.+-....=...+||| .++...+=+++
T Consensus 326 ~F~~hlesai~r~P~l~k~~i~~~-----v~--------gpe~ftPD~~p~mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk 392 (856)
T KOG2844|consen 326 HFEPHLEAAIERVPVLEKAGIKSL-----VN--------GPETFTPDHLPIMGESPEVRGYWVACGFNSAGLSFGGGCGK 392 (856)
T ss_pred hhHHHHHHHHHhCchhhhcCccce-----ec--------CccccCCccccccCCCccccceEEeecCCccceeccCchhH
Confidence 345666777788898877653332 11 12223335556677777666666677777 55555555566
Q ss_pred HHHHHHhCCC
Q 008915 421 GVYEAVRGDF 430 (549)
Q Consensus 421 ~i~~Al~~g~ 430 (549)
.+.+.+-+|.
T Consensus 393 ~la~wi~~g~ 402 (856)
T KOG2844|consen 393 YLAEWIIHGQ 402 (856)
T ss_pred HHHHHhhcCC
Confidence 6666666665
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.2e-07 Score=99.58 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=56.4
Q ss_pred ceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEE-CCEEEEEE---cCCc--EEEcCEEEEccCCChH-HHHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTY-ENAAVLLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~-~dgv~V~~---~dG~--~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
..||+..+.+.|.+.+.+ .|++++++++|+++... +++++|.+ .+++ +++|+.||-|.|.+|. +++.++..
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 458999999999998865 48999999999999877 66777763 3342 6999999988888885 77777654
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=96.02 Aligned_cols=111 Identities=23% Similarity=0.363 Sum_probs=79.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
|||+||||| +|+++|..|++.|++|+|||+....+. |... . .+ ..+ +. +.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~----------~-----~~-----~~~-~~---~~-- 51 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQ---LTTT----------T-----EV-----ENY-PG---FP-- 51 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcc---eeec----------c-----cc-----ccc-CC---CC--
Confidence 799999976 689999999999999999998863221 1000 0 00 001 00 00
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
..+....+...+.+.+.+.|++++. ++|++++.+++.+.|.+++++++++|.||.|+|...
T Consensus 52 ----------~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 52 ----------EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred ----------CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 0122345566777777788999988 899999888788888887788999999999999864
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=95.48 Aligned_cols=150 Identities=21% Similarity=0.257 Sum_probs=94.6
Q ss_pred CcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCCCC----ccccCCHHH-------------HHHHHHc-------
Q 008915 109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGRE----QEWNISRKE-------------LLELVES------- 163 (549)
Q Consensus 109 ~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~~~----r~~~IS~~~-------------l~~L~~l------- 163 (549)
..+||||||+|+ |+++|+.||++|.+++|+|+.++|-.. ..-.|-+.+ ++.-.++
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 369999999876 999999999999999999999887421 111111111 1111100
Q ss_pred -----CCC---Cc--ccchhhhh------------------hccCCCcccccCCccccccccccceeCHHHHHHHHHHHH
Q 008915 164 -----GIL---VE--DDIDEATA------------------TKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRF 215 (549)
Q Consensus 164 -----Gl~---~~--~eie~~i~------------------~~~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a 215 (549)
+++ +. .+++++.. ..| |..+.+..+ ....-+..+-.+.+.+-.++|..++
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~f-P~~~~l~d~-~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRF-PSNIPLPDG-WQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhC-CCCccCCcc-hhhcccccccEeeHHHHHHHHHHHH
Confidence 100 00 01111110 111 112333221 1111122344577888889999999
Q ss_pred HhcCCEEEeCceEEEEEE---ECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 216 ISLGGVIFEGYSVSSICT---YENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 216 ~~~G~~v~~~t~v~~i~~---~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
++.|+.++.+..++.+.. ++.++.|.+.+|..+.|+=+|-+.|++
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 999999999999998863 344677888889899999999999976
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-07 Score=97.87 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=47.7
Q ss_pred ceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+++..+...|.+++.+. |++++++++|++++. + .|.+++| +++|+.||.|.|..|.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~--~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G--TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C--eEEeCCC-cEEeCEEEECCCCChh
Confidence 3479999999999988775 999999999999854 2 5666556 4789999999999875
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.6e-07 Score=94.46 Aligned_cols=130 Identities=18% Similarity=0.305 Sum_probs=81.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhC-CCcEEEEccCCCCCCCcccc----CC-----HHHHHHHHHcCCCCcccchhhhhhc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGREQEWN----IS-----RKELLELVESGILVEDDIDEATATK 178 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~-GlrVlLIEr~~~~~~~r~~~----IS-----~~~l~~L~~lGl~~~~eie~~i~~~ 178 (549)
++||+||||| +|+++|+.|+++ |++|+||||...++. +.|. ++ ......|+++|+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG-G~~~gg~l~~~~vv~~~a~e~LeElGV~------------ 158 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG-GAWLGGQLFSAMVVRKPAHLFLDELGVP------------ 158 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc-ceeeCcccccccccccHHHHHHHHcCCC------------
Confidence 6999999976 599999999986 999999999876542 1121 00 0112233444431
Q ss_pred cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCE---EEEEE-----c--CC--
Q 008915 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENA---AVLLL-----A--EG-- 245 (549)
Q Consensus 179 ~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dg---v~V~~-----~--dG-- 245 (549)
|..... +....+...+...|.+++.+ .|++++.++.++++..+++. +++.. + ++
T Consensus 159 -------fd~~dg------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~ 225 (357)
T PLN02661 159 -------YDEQEN------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSC 225 (357)
T ss_pred -------cccCCC------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCc
Confidence 110000 00011223445667776654 68899999999999887664 22211 1 11
Q ss_pred ---cEEEcCEEEEccCCChHHHH
Q 008915 246 ---KILSSHLIIDAMGNFSPVVK 265 (549)
Q Consensus 246 ---~~i~ArlVI~ADG~~S~vrr 265 (549)
..++||.||.|+|+..++..
T Consensus 226 ~dp~~I~AkaVVlATGh~g~~ga 248 (357)
T PLN02661 226 MDPNVMEAKVVVSSCGHDGPFGA 248 (357)
T ss_pred cceeEEECCEEEEcCCCCCcchh
Confidence 26899999999998887554
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-07 Score=100.03 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=89.5
Q ss_pred EEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC------ccccCCHH-HHHHH-HHcCCCCcccchhhhhhccCCCc-
Q 008915 114 IVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRK-ELLEL-VESGILVEDDIDEATATKFNPNR- 183 (549)
Q Consensus 114 IIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~------r~~~IS~~-~l~~L-~~lGl~~~~eie~~i~~~~~~~~- 183 (549)
|||||| +|+++|+.|+++|++|+|+||++.++.+ .-.|++.. ....+ ...+- ....+.... ..|....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~-~~~~~~~~l-~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPR-NGKFLRSAL-SRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCC-CcHHHHHHH-HhCCHHHH
Confidence 577855 6999999999999999999998865432 01122211 01111 11110 000011100 1111000
Q ss_pred cccc-C-Ccccccc---ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 184 CGFE-G-KGEIWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 184 i~f~-~-~~~l~~~---~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
+.|. . +-++... ..+...-....+.+.|.+.+.+.|++++.++.|+++..+++.+.|.+ +++++.||.||.|+|
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCC
Confidence 0000 0 0000100 01111113456778888889889999999999999988777777777 566899999999999
Q ss_pred CCh-----------HHHHHhcCC
Q 008915 259 NFS-----------PVVKQIRSG 270 (549)
Q Consensus 259 ~~S-----------~vrrql~~~ 270 (549)
..| .++++++..
T Consensus 158 ~~s~p~~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 158 GLSYPQLGSTGDGYEIAESLGHT 180 (400)
T ss_pred CcccCCCCCCcHHHHHHHHCCCC
Confidence 987 577777654
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.1e-07 Score=100.74 Aligned_cols=113 Identities=24% Similarity=0.279 Sum_probs=82.7
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
..+|||+||||| +|+++|..|++.|++|+|||+. ..+. |.- ..+ ++. + ..+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-~GG~---~~~---------~~~------~~~-----~----~~~ 260 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-FGGQ---VLD---------TMG------IEN-----F----ISV 260 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCe---eec---------cCc------ccc-----c----CCC
Confidence 447999999975 5888999999999999999864 2121 100 000 000 0 000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
+ ..+...+.+.|.+.+++.|++++.+++++++...++.+.|.+++|.+++++.||.|+|..+
T Consensus 261 --------~-----~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 261 --------P-----ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred --------C-----CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 0 0233467788888888889999999999999888788888888888999999999999875
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.8e-07 Score=99.05 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECC----EEEEE-----EcCC-cEEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLL-----LAEG-KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~-----~~dG-~~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++++.|+++++++.++++..+++ ++.+. ..++ .++.|+.||.|+|..|.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 45778888888888999999999999987754 34333 1233 36999999999999884
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=9e-07 Score=97.81 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE---EEEEEcCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+.+.+.|++++.+++++++..+++. +.+...+++ +++|+.||.|+|..+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 456778888888899999999999999876554 334434433 6999999999997764
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.9e-07 Score=101.10 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=85.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC-CCCcc----ccCCHH-HHHHHHHcCCCCcccchhhhh---hccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQE----WNISRK-ELLELVESGILVEDDIDEATA---TKFN 180 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~-~~~r~----~~IS~~-~l~~L~~lGl~~~~eie~~i~---~~~~ 180 (549)
||||||||| +|+.+|.++|+.|.+|+|||+.... +...+ ..+..+ -...+..+|=. +..+.. ..|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~----~~~~~d~~~i~~r 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGL----MGKAADKAGLQFR 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccch----HHHHHHhhceehe
Confidence 799999976 6889999999999999999987432 11111 011111 12233333311 011110 0110
Q ss_pred CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEE-CCE-EEEEEcCCcEEEcCEEEEcc
Q 008915 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTY-ENA-AVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 181 ~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~-~dg-v~V~~~dG~~i~ArlVI~AD 257 (549)
...... +..++.+ ...+|+..+.+.+.+.+.+. +++++. .+++++..+ ++. +.|.+.+|..+.|+.||.|+
T Consensus 77 ~ln~sk--gpAV~~~---RaQVDr~~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILAT 150 (617)
T TIGR00136 77 VLNSSK--GPAVRAT---RAQIDKVLYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITT 150 (617)
T ss_pred ecccCC--CCccccc---HHhCCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCCEEECCEEEEcc
Confidence 000000 1112221 24689999999999999888 456664 477777665 333 44777788899999999999
Q ss_pred CCCh
Q 008915 258 GNFS 261 (549)
Q Consensus 258 G~~S 261 (549)
|.++
T Consensus 151 GtfL 154 (617)
T TIGR00136 151 GTFL 154 (617)
T ss_pred Cccc
Confidence 9994
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.9e-07 Score=98.80 Aligned_cols=59 Identities=15% Similarity=0.362 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EE---EcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL---LAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~---~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+...|.+++.+.|+++++++.++++..+++.++ |. ..+|+ .++|+.||.|+|..|.+
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRI 193 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCC
Confidence 35677888888888999999999999988766443 22 23554 68999999999998854
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-06 Score=97.57 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=83.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCc----cccC--------CHHH-HHHHHHc--CCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQ----EWNI--------SRKE-LLELVES--GILVEDDI 171 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r----~~~I--------S~~~-l~~L~~l--Gl~~~~ei 171 (549)
++|||||||| +|+++|+.+++. |.+|+||||....+... .+.+ +... .+.+... ++.++.-+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 6999999965 699999999998 99999999987643221 1111 1111 0111111 11111000
Q ss_pred hhhhh------hccCCCcccccCC--ccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEE---
Q 008915 172 DEATA------TKFNPNRCGFEGK--GEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV--- 239 (549)
Q Consensus 172 e~~i~------~~~~~~~i~f~~~--~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~--- 239 (549)
+.... .......+.|... ..+.........+....+.+.|.+++.+.| ++++.++.++++..+++.+.
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~ 170 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAV 170 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence 00000 0000001112100 000000000011345567788888888776 89999999999987666432
Q ss_pred E-EEcCCc--EEEcCEEEEccCCChH
Q 008915 240 L-LLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 240 V-~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
+ ...+++ +++|+.||.|+|..+.
T Consensus 171 ~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 171 GFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEccCCcEEEEECCEEEECCCchhh
Confidence 2 223454 7999999999998764
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=95.67 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEE-EEEcC-C--cEEEcCEEEEccCCChHH
Q 008915 204 PAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE-G--KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 204 ~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~d-G--~~i~ArlVI~ADG~~S~v 263 (549)
...+.+.|.+++.+ .|+++++++.++++..+++.+. |.+.+ + .+++|+.||.|+|..|.+
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 35677888888887 5899999999999987665544 33332 3 378999999999999864
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-06 Score=98.14 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE----EEEcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~----V~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+...|.+++.+. ++++++++.++++..+++.+. +...+|+ .++|+.||.|+|..|.+
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 35667788877765 789999999999988766543 2334563 79999999999999865
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=98.39 Aligned_cols=59 Identities=17% Similarity=0.363 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE----EEEcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~----V~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++.+.|+++++++.++++..+++.+. +...+|+ .++|+.||.|+|..+.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 45777888888888999999999999987665432 2233554 69999999999998753
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-06 Score=94.53 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEE--cCC--cEEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEG--KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~dG--~~i~ArlVI~ADG~~S~ 262 (549)
..+...|.+++++.|++++.+++++++..+++.++ |.+ .++ .+++|+.||.|+|..+.
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 45778888889889999999999999987666543 333 233 36899999999997654
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-06 Score=94.62 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC----EEEEEEcCCc--EEEcCEEEEccCCChH
Q 008915 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
+...+.+.|.+++.+.|++++.+++++++..+++ ++++...+++ .+.+|.||.|+|..|.
T Consensus 128 ~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 128 SGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 3456788889999999999999999999988654 3334433444 5789999999998886
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=96.75 Aligned_cols=113 Identities=25% Similarity=0.350 Sum_probs=80.3
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
...|||+||||| +|+++|..|++.|++|+|||.. ..+... . ..+ ++ . +
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-~GG~~~--~----------~~~------~~-----~-------~ 258 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-IGGQVK--D----------TVG------IE-----N-------L 258 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCccc--c----------CcC------cc-----c-------c
Confidence 446999999975 5888999999999999999752 211100 0 000 00 0 0
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.+ .+. .....+.+.+.+.+.+.|++++.+++|+++..+++.+.|.+++|.+++++.||.|+|...
T Consensus 259 ~~-----~~~-----~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 259 IS-----VPY-----TTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred cc-----cCC-----CCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 00 000 123456677778888889999999999999887777888887888999999999999863
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=93.82 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CCc--EEEcCEEEEccCCChH-HHHHh
Q 008915 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSP-VVKQI 267 (549)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG~--~i~ArlVI~ADG~~S~-vrrql 267 (549)
-..+.+.|.+.+++.|++++.+++++++..+++.|+ |.+. +|+ +++|+-||.|+|..+. ..++.
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~ 210 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQY 210 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccccccccc
Confidence 356788999999999999999999999999877544 3332 455 6899999999999994 44443
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-06 Score=92.57 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EE-EEEc-CCc--EEEc-CEEEEccCCChH
Q 008915 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLLA-EGK--ILSS-HLIIDAMGNFSP 262 (549)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~-V~~~-dG~--~i~A-rlVI~ADG~~S~ 262 (549)
...+.+.|.+++++.|++++.+++++++..++++ ++ |.+. +++ +++| +.||.|+|..+.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 4567888999998899999999999999876542 22 2222 333 6889 999999998774
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-06 Score=96.90 Aligned_cols=58 Identities=10% Similarity=0.207 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CCEEE---E-EEcCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAV---L-LLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~---V-~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+...|.+++.+.|++++.++.++++..+ ++.+. + ...+|+ .++|+.||.|+|..+.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 367788888888889999999999999874 33222 2 223454 6899999999998753
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-06 Score=94.72 Aligned_cols=59 Identities=12% Similarity=0.248 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE----EEEcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~----V~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++.+. ++++++++.++++..+++.+. +...+|+ .+.|+.||.|+|..|.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 45778888887664 789999999999988766443 2233563 79999999999998864
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-06 Score=95.68 Aligned_cols=57 Identities=12% Similarity=0.277 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EE---E-EEcCCc--EEEcCEEEEccCCChH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV---L-LLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~---V-~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
.+...|.+++.+.|+++++++.++++..++++ ++ + ...+|+ .+.|+-||.|+|..+.
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 57778888888889999999999999876543 22 2 123554 7999999999998864
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-06 Score=88.10 Aligned_cols=112 Identities=26% Similarity=0.351 Sum_probs=76.7
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCc-EEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~Glr-VlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.|||||||| |+|+++|..++|+|++ ++++|+....+.. ..+. + +..| ..|.
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~----------------~~~~--~-----veny----pg~~ 55 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQL----------------TKTT--D-----VENY----PGFP 55 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcc----------------ccce--e-----ecCC----CCCc
Confidence 699999996 5699999999999999 7777765443210 0000 0 0111 0111
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
+ .+.-..|.+.+.+.+...|+++.. ..+..++..++.++|.+.++. ++||.||.|+|....
T Consensus 56 ~------------~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 56 G------------GILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred c------------CCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 0 123345677777788777888777 778887766657888887776 999999999998763
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-06 Score=95.49 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEE---E-EEcCCc--EEEcCEEEEccCCChHH
Q 008915 206 KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 206 ~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~---V-~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
.+.+.|.+++.+ .|+++++++.++++..+++.+. + ...+|+ .++|+.||.|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence 466777777766 5889999999999987665432 2 223554 68999999999998654
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.7e-06 Score=95.23 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EE-EEE---cCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLL---AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~-V~~---~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+...|.+++.+.|+++++++.++++..++++ +. |.+ .+|+ .+.|+-||.|+|..+.
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 357788888888889999999999998876433 22 222 2454 7899999999998864
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.9e-06 Score=92.60 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=87.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhcc-----C--C
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF-----N--P 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~-----~--~ 181 (549)
..+|+||||| +|+++|..|.+.|++|+|+||....+ ..|+.++..-. ..+++-+...+ +...-| + .
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG--G~W~~~~~~~~--d~~~~~~~~~~--~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG--GLWVYTPKSES--DPLSLDPTRSI--VHSSVYESLRTNLPR 83 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc--ceeecCCCcCC--CccccCCCCcc--cchhhhhhhhccCCH
Confidence 5899999976 58899999999999999999987655 34554322100 01111100000 000011 0 0
Q ss_pred CcccccC---Ccccc-c-cccccceeCHHHHHHHHHHHHHhcCCE--EEeCceEEEEEEECCEEEEEEcCC--c--EEEc
Q 008915 182 NRCGFEG---KGEIW-V-EDILNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYENAAVLLLAEG--K--ILSS 250 (549)
Q Consensus 182 ~~i~f~~---~~~l~-~-~~~l~~~V~~~~L~~~L~~~a~~~G~~--v~~~t~v~~i~~~~dgv~V~~~dG--~--~i~A 250 (549)
..+.|.+ ..... . .+...+ .....+.+.|.+.+...|.. |+.+++|+++...++.+.|++.++ . +..+
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~f-p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~ 162 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRY-PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIF 162 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCC-CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEc
Confidence 0111111 00000 0 000001 23466888899888888875 899999999998888899888642 2 4678
Q ss_pred CEEEEccCCCh
Q 008915 251 HLIIDAMGNFS 261 (549)
Q Consensus 251 rlVI~ADG~~S 261 (549)
|.||.|+|+.+
T Consensus 163 d~VIvAtG~~~ 173 (461)
T PLN02172 163 DAVVVCNGHYT 173 (461)
T ss_pred CEEEEeccCCC
Confidence 99999999865
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.2e-06 Score=88.58 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=53.8
Q ss_pred ceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH-HHHhc
Q 008915 200 LGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV-VKQIR 268 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v-rrql~ 268 (549)
..+++..+.+.|.+.+.+.|+ .+..++.++.+....+.+.|.+.+|+ ++|+.||-|.|.+|.. ...++
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence 357899999999999999995 66778999988764255677776776 9999999999999874 33344
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00024 Score=76.30 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.+.+.|.+.+.+.|++|+.+++|++|+.+++++++...++++++||.||-|....
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 3567777788778999999999999998888776555577789999999998864
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.8e-06 Score=91.04 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEE--EEEcCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV--LLLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~--V~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++.+ .|++++++++++++..+++.+. +...++. +++|+-||.|+|..+.
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 4567778877765 4899999999999987666432 1122443 6999999999998653
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-05 Score=90.44 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++.+.|+++++++.++++..+++.++ |.+. +++ .++|+-||.|+|..+.+
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 34667788888888999999999999998765433 2221 333 68999999999988743
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=92.15 Aligned_cols=113 Identities=20% Similarity=0.089 Sum_probs=74.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC---------CccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR---------EQEWNISRKELLELVESGILVEDDIDEATATKFN 180 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~---------~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~ 180 (549)
-||+||||| +|+.+|+.||++|++|.|+|+.+.+.. .+.-++|.++...+...|+|.. +++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~-em~~l------ 75 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKE-EMRRL------ 75 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHH-HHHHh------
Confidence 589999977 599999999999999999998765432 1223466667777888898852 22211
Q ss_pred CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEE
Q 008915 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSIC 232 (549)
Q Consensus 181 ~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~ 232 (549)
+.+.+........+..-...+|+..|.+.|.+++.+. +++++ ..+|+++.
T Consensus 76 -gsl~~~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 76 -GSLIMEAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred -cchheecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 0011221111122222124689888999999999876 56777 66888874
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.4e-06 Score=92.99 Aligned_cols=55 Identities=7% Similarity=0.184 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CCc--EEEcCEEEEccCCChH
Q 008915 208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG~--~i~ArlVI~ADG~~S~ 262 (549)
.+.|.+++.+.|+++++++.++++..+++.++ |.+. +|+ .+.|+.||.|+|..+.
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 35666677778999999999999987765433 2222 454 6899999999999764
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.5e-06 Score=91.34 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EE-EE--E-cCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LL--L-AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~-V~--~-~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+...|.+++.+.|++++.++.++++..++++ ++ |. . .+|+ .++|+-||.|+|..+.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 456677888888889999999999999887665 32 22 1 3554 6999999999998764
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.7e-06 Score=89.09 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChHHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~vr 264 (549)
..+.+.|.+++.+.|++++.. .++++..+++.+. |.+ ++..++|+-||.|+|..|.+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSGLF 178 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcCCC
Confidence 467788888998889998876 7888876655554 333 567899999999999998754
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=90.80 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEEC----CEE---EE-EEcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE----NAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~----dgv---~V-~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++.+.|+++++++.++++..++ +.+ .+ ...+|+ .++|+-||.|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 4577888888888899999999999998665 322 22 223454 68999999999998743
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-05 Score=91.00 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEE--E---EcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL--L---LAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V--~---~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+...|.+++.+.|+++++++.++++..++++.++ . ..+|+ .+.|+-||.|+|..+.+
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 357778888888889999999999999876443222 1 23454 68999999999998753
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=90.05 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-E---EEE-EcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VLL-LAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V~-~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..|...|.+++.+.|++++.++.++++..++++ + .+. ..+|+ .+.|+-||.|+|..+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 357788888888889999999999999876443 2 221 22454 68999999999998754
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=90.68 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=83.1
Q ss_pred CCCCCCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccc---cC--------CHHH-HHHHHHcC--CCCc
Q 008915 104 SDKAVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEW---NI--------SRKE-LLELVESG--ILVE 168 (549)
Q Consensus 104 ~~~~~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~---~I--------S~~~-l~~L~~lG--l~~~ 168 (549)
.++...++|||||||| +|+++|+.+++.| +|+||||....+....| .| |... ++.....| +.++
T Consensus 23 ~~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~ 101 (594)
T PLN02815 23 DDESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDE 101 (594)
T ss_pred ccCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcH
Confidence 4445557999999965 6999999999999 99999998875432111 11 1111 01111111 1111
Q ss_pred ccchhhhh-----hcc-CCCcccccCC--ccccc--------cccc-cceeCHHHHHHHHHHHHHhc-CCEEEeCceEEE
Q 008915 169 DDIDEATA-----TKF-NPNRCGFEGK--GEIWV--------EDIL-NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSS 230 (549)
Q Consensus 169 ~eie~~i~-----~~~-~~~~i~f~~~--~~l~~--------~~~l-~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~ 230 (549)
.-++.++. .++ ....+.|... ..+.. +..+ .....-..+...|.+++.+. |+++++++.+++
T Consensus 102 ~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~ 181 (594)
T PLN02815 102 ETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID 181 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhe
Confidence 10111100 000 0001122100 00000 0000 00011235667788888765 789999999999
Q ss_pred EEEECCE----EE-EEE---cCCc--EEEcCEEEEccCCChH
Q 008915 231 ICTYENA----AV-LLL---AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 231 i~~~~dg----v~-V~~---~dG~--~i~ArlVI~ADG~~S~ 262 (549)
+..++++ ++ |.+ .+|+ .+.|+-||-|+|..+.
T Consensus 182 Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 182 LLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred eeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 9876432 21 222 2454 6899999999998764
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=89.83 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-E---EE-EEcCCc--EEEcCEEEEccCCChHH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V-~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
.+.+.|.+++.+.|++++.++.++++..++++ + .+ ...+|+ .++|+.||.|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 57788888888889999999999999876333 2 22 123554 58999999999998753
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.1e-06 Score=90.88 Aligned_cols=110 Identities=16% Similarity=0.272 Sum_probs=75.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.|||+||||| +|+++|..|+++|++|+|||+....+.. ..+ . .+ ..| .+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~---~~~-------------~--~i-----~~~-------pg 53 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQI---TIT-------------S--EV-----VNY-------PG 53 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceE---Eec-------------c--cc-----ccC-------CC
Confidence 5999999975 6888888999999999999987543311 000 0 00 001 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.. .+....+.+.+.+.+.+.|++++ .++|+++..+++.+.|.+.++ .+.++.||.|+|..+
T Consensus 54 ~~----------~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p 114 (555)
T TIGR03143 54 IL----------NTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASP 114 (555)
T ss_pred Cc----------CCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCcc
Confidence 00 12234556667777777788875 678888887666667777555 589999999999875
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.7e-05 Score=87.75 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEE--cCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++. .|+++++++.++++..+++.+. |.+ .+|+ .++|+.||.|+|..+.
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 446677777775 6899999999999977655433 222 2343 6899999999999774
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-05 Score=88.65 Aligned_cols=149 Identities=12% Similarity=0.088 Sum_probs=79.8
Q ss_pred ccEEEEcchH-HHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccc-hhhhhhccCCCc-cc
Q 008915 111 FDVIVCGGTL-GIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDI-DEATATKFNPNR-CG 185 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~ei-e~~i~~~~~~~~-i~ 185 (549)
.+|+|||||+ |+++|..|++. .++|.|+|+...++....|.....+-..+....-.+.... .++. +|.... ..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~--~Wl~~~~~~ 79 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYL--EWLQKQEDS 79 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHH--HHhhhhhHH
Confidence 5799999765 99999999875 4699999998766644444331111111111110000000 0000 010000 00
Q ss_pred -cc--CC--ccccccccccceeCHHH---HHHHHHHHHHhcC--CEEEeCceEEEEEEECCEEEEEEcC-CcEEEcCEEE
Q 008915 186 -FE--GK--GEIWVEDILNLGVSPAK---LIEIVKKRFISLG--GVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLII 254 (549)
Q Consensus 186 -f~--~~--~~l~~~~~l~~~V~~~~---L~~~L~~~a~~~G--~~v~~~t~v~~i~~~~dgv~V~~~d-G~~i~ArlVI 254 (549)
+. +. ..+.....+...+--.+ ..+.+.+.+.+.| ++++..++|+++..+++++.|++.+ +.++.|+.||
T Consensus 80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence 00 00 00000000111111112 2233445556666 5788899999999998999998855 4689999999
Q ss_pred EccCCCh
Q 008915 255 DAMGNFS 261 (549)
Q Consensus 255 ~ADG~~S 261 (549)
.|+|+..
T Consensus 160 LAtGh~~ 166 (534)
T PRK09897 160 IATGHVW 166 (534)
T ss_pred ECCCCCC
Confidence 9999754
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-05 Score=89.49 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=31.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
++|||||||| +|+++|+.+++.|.+|+||||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 6999999965 69999999999999999999987654
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0012 Score=71.99 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=34.8
Q ss_pred CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 220 ~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
++|+.+++|+.|+.+++++.|.+.+|+++.||.||.|.-
T Consensus 239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 239 TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 479999999999999999988887888899999998883
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-05 Score=89.39 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE---EEEEE-cCCc--EEEcCEEEEccCCChHH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLL-AEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~-~dG~--~i~ArlVI~ADG~~S~v 263 (549)
.+...|.+++.+.|+++++++.++++..+++. +++.. .+|+ .+.|+-||-|+|..+.+
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 35567888888889999999999999877654 33332 3564 57899999999976643
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.3e-06 Score=88.34 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=71.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+|||+||||| +|.++|..++++|++|+|+||....+.+..+. +..+.+..-. .+.. .++.. ..+ .+...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a--~~~~--~~~~~--~~~---g~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGS--TFGG--EFEDA--AGY---GWTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHH--HHHH--HHhhh--Hhc---CcCCC
Confidence 6999999976 58888889999999999999976655332111 2222110000 0000 00000 000 00000
Q ss_pred CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
...+..+..... .+ -..+.+.+.+.+...|++++.+ +++.++ .+.+.|. .+|+++++|.||-|+|...
T Consensus 73 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~--~~~v~v~-~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 73 -KARFDWKKLLQK-KDDEIARLSGLYKRLLANAGVELLEG-RARLVG--PNTVEVL-QDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred -CCCcCHHHHHHH-HHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEec--CCEEEEe-cCCeEEEcCEEEEecCCcC
Confidence 000111000000 00 0123345555666779988876 454442 3445554 3577899999999999753
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-05 Score=89.33 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc--CCc-EEEcC-EEEEccCCChH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK-ILSSH-LIIDAMGNFSP 262 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~--dG~-~i~Ar-lVI~ADG~~S~ 262 (549)
.+.+.|.+++.+.|++++.++.|+++..+++.++ |.+. ++. .+.++ -||-|.|..+.
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 3556677888888999999999999988766443 3332 343 57884 78889998873
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=89.83 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE---EEEcCCc-EEEc-CEEEEccCCChH
Q 008915 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGK-ILSS-HLIIDAMGNFSP 262 (549)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~---V~~~dG~-~i~A-rlVI~ADG~~S~ 262 (549)
...|...|.+++++.|++++.+++|+++..+++.++ +...++. +++| +.||-|.|..+.
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 345667888889999999999999999987655432 3322343 5889 989999998875
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.4e-06 Score=90.60 Aligned_cols=39 Identities=33% Similarity=0.450 Sum_probs=33.0
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
.+||||||||| .|.++|..+++.|.+|+||||....+.+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtC 86 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTC 86 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccc
Confidence 47999999976 5778888999999999999998766643
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.4e-05 Score=86.40 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEE-cCCc--EEEc-CEEEEccCCChHHH
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSS-HLIIDAMGNFSPVV 264 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~-~dG~--~i~A-rlVI~ADG~~S~vr 264 (549)
|...|.+++.+.|++++.+++++++..+++.|+ |.. .+|+ .+.| +-||-|+|..+...
T Consensus 219 l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 219 LAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence 445677778888999999999999986544332 212 2343 4666 57888999888643
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.3e-05 Score=87.00 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=31.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+|||||||| +|+++|+.++++|.+|+||||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4699999965 69999999999999999999987654
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.9e-05 Score=83.64 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCChHHH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~S~vr 264 (549)
.+.+.+.+.+++.|++++.+++++++..+++++.+.+.+| +++.++.||.|.|..+.+.
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 3456677778888999999999999988878888777666 4799999999999887643
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.5e-05 Score=85.19 Aligned_cols=137 Identities=22% Similarity=0.280 Sum_probs=72.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCCCCcccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+|||+||||| +|+.+|..|+++|++|+||||+. +.+...-++ +....+...... .. ..+. ...| ..+
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~--~~--~~~~--~~~~----~~~ 74 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLR--LI--GFNQ--NPLY----SSY 74 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHH--HH--HHhh--hhhh----ccc
Confidence 6999999976 58889999999999999999964 444321111 222221110000 00 0000 0000 000
Q ss_pred cCCcccccccccc---ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc--EEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILN---LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~---~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~--~i~ArlVI~ADG~~S 261 (549)
.....+..+..+. ..+ ..+.+.+.+.+.+.|++++.++. .. .++..+.|...+|+ ++++|.||-|+|...
T Consensus 75 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~v~~~~g~~-~~--~~~~~~~v~~~~g~~~~~~~d~lviATGs~p 149 (461)
T PRK05249 75 RVKLRITFADLLARADHVI--NKQVEVRRGQYERNRVDLIQGRA-RF--VDPHTVEVECPDGEVETLTADKIVIATGSRP 149 (461)
T ss_pred CCcCccCHHHHHHHHHHHH--HHHHHHHHHHHHHCCCEEEEEEE-EE--ecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 0000000000000 000 11233455566677888887742 22 34556777776664 799999999999653
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=85.66 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=76.0
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC---------ccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESGILVEDDIDEATATKFN 180 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~---------r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~ 180 (549)
.||+||||| +|+.+|..||++|++|+|+|+.+..... +..+.|.++...+...|+|.. +++.. .
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~-ei~~l-----g 74 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKT-EMRQL-----S 74 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHH-HHhhc-----C
Confidence 379999987 5999999999999999999987653211 112334444555666676642 22211 0
Q ss_pred CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 181 ~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
...+.......++..-.+.+++..+.+.+.+++.+... +++ ..+++++.. .+.||.|+|.
T Consensus 75 --~l~~~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItvi-q~eV~dL~~----------------~d~VViATG~ 135 (433)
T TIGR00137 75 --SLIITAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLI-REEVTEIPE----------------EGITVIATGP 135 (433)
T ss_pred --eeeeehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEE-eeeeEEEcc----------------CCeEEEeCCC
Confidence 01111111111122223467898889999999877643 443 555555431 2366667774
Q ss_pred --ChHHHHHh
Q 008915 260 --FSPVVKQI 267 (549)
Q Consensus 260 --~S~vrrql 267 (549)
...+.+++
T Consensus 136 ~~s~~La~~L 145 (433)
T TIGR00137 136 LTSPALSEDL 145 (433)
T ss_pred CccHHHHHHH
Confidence 33455554
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.1e-05 Score=88.09 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc-CCc--EEEcC-EEEEccCCChH
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSH-LIIDAMGNFSP 262 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~-dG~--~i~Ar-lVI~ADG~~S~ 262 (549)
+...|.+.+++.|++++.+++++++..+++.|+ |.+. +++ +++|+ -||-|+|..+.
T Consensus 210 ~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 210 LAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 556677778888999999999999988766443 3332 443 68896 47777776655
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=85.38 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=32.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
+|||+||||| .|..+|..++++|++|+||||....+.+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c 40 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTC 40 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccce
Confidence 5999999976 5888888999999999999998766643
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.9e-05 Score=83.75 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=30.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++||||||+| +|+++|+.++++|.+|+||||.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 7999999965 68899999999999999999988
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=73.64 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEE--EEEEcCCcEEEcCEEEEccCC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv--~V~~~dG~~i~ArlVI~ADG~ 259 (549)
+-+.|.+.+++.|++|+.+++|++|..++++. .|.+.+|+++.||.||-|...
T Consensus 310 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 310 LCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 33555566666899999999999999876663 366668889999999999854
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.2e-05 Score=86.44 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEEC-CE-EE-EE-EcCCc--EEEcCEEEEccCCCh
Q 008915 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE-NA-AV-LL-LAEGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~-dg-v~-V~-~~dG~--~i~ArlVI~ADG~~S 261 (549)
..+...|.+++.+. |+++++++.++++..++ ++ +. |. ..+|. .+.|+-||-|+|..+
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 34667777777654 88999999999998764 23 21 21 23554 589999999999853
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.4e-05 Score=83.32 Aligned_cols=136 Identities=26% Similarity=0.248 Sum_probs=70.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-CCHHHHHHHHHcCCCCcccchhhhh-hccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATA-TKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~-~~~~~~~i~f 186 (549)
+||||||||| +|+++|..|+++|++|+||||....+.+..++ +..+.+... ..+ ++.... ..+ + +..
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~--~~~-----~~~~~~~~~~--g-~~~ 73 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHA--AER-----ADEARHSEDF--G-IKA 73 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHh--hhH-----HHHHHHHHhc--C-ccc
Confidence 6999999976 58888889999999999999987655321111 221211100 000 000000 011 0 000
Q ss_pred cCCcccccccccc---ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC-CcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILN---LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~---~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d-G~~i~ArlVI~ADG~~S 261 (549)
. ...+....... ..+ ..+..-+.+.+.+.|++++.++. +. .++..+.|...+ ++++++|.||-|+|...
T Consensus 74 ~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gv~~~~g~~-~~--~~~~~~~v~~~~~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 74 E-NVGIDFKKVQEWKNGVV--NRLTGGVEGLLKKNKVDIIRGEA-KL--VDPNTVRVMTEDGEQTYTAKNIILATGSRP 146 (462)
T ss_pred C-CCccCHHHHHHHHHHHH--HHHHHHHHHHHHhCCCEEEEEEE-EE--ccCCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence 0 00000000000 000 11222345556667899887743 22 344556666433 46899999999999764
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=85.81 Aligned_cols=131 Identities=22% Similarity=0.296 Sum_probs=75.5
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCc-EEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~Glr-VlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
..++||+||||| .|+++|.+|.++|.. ++++||+..++ ..|...+. -++..... .....|. ...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G--g~W~~~ry-------~~l~~~~p---~~~~~~~--~~p 71 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG--GTWRYNRY-------PGLRLDSP---KWLLGFP--FLP 71 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC--CcchhccC-------CceEECCc---hheeccC--CCc
Confidence 347999999977 588899999999999 99999997655 23432110 01110000 0000110 011
Q ss_pred ccCCccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEEC--CEEEEEEcCCcE--EEcCEEEEccCC
Q 008915 186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE--NAAVLLLAEGKI--LSSHLIIDAMGN 259 (549)
Q Consensus 186 f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~--dgv~V~~~dG~~--i~ArlVI~ADG~ 259 (549)
|. +.+..... ..+...+.+.+...+. ++...+.|+.+..++ +.++|++++|.+ ++||.||-|+|.
T Consensus 72 ~~-----~~~~~~~~----~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 72 FR-----WDEAFAPF----AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred cC-----CcccCCCc----ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 11 00000001 1144455555555554 566666666665544 479999987664 569999999998
Q ss_pred Ch
Q 008915 260 FS 261 (549)
Q Consensus 260 ~S 261 (549)
.|
T Consensus 143 ~~ 144 (443)
T COG2072 143 LS 144 (443)
T ss_pred CC
Confidence 65
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.4e-05 Score=78.51 Aligned_cols=111 Identities=12% Similarity=0.117 Sum_probs=71.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.+||+||||| +|+++|..|+++|++|++||+....+.. .. .. ++ ..+ .+
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~---~~-------------~~--~~-----~~~-------~~ 55 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL---TT-------------TT--EV-----ENW-------PG 55 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCce---ec-------------Cc--eE-----CCC-------CC
Confidence 6999999976 5888888999999999999965432210 00 00 00 001 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.. ..++...+.+.+.+.+...+.+++.+ ++++++..++.+.++.++ ..+++|.||.|+|...
T Consensus 56 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 56 DP---------NDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDS-GEYTCDALIIATGASA 117 (321)
T ss_pred CC---------CCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecC-CEEEECEEEECCCCCC
Confidence 00 01223345566666666667776654 577787777777776543 3699999999999874
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.4e-05 Score=85.66 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=72.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.||||||||| +|.++|..|+++|++|+|||+..+.+.+..+. +..+.+-... .+ +.... ......+...
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a--~~-----~~~~~--~~~~~g~~~~ 74 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSA--EV-----FQTAK--KASPFGISVS 74 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHH--HH-----HHHHH--HHHhcCccCC
Confidence 6999999976 58888889999999999999986655432111 2222211100 00 00000 0000000000
Q ss_pred CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-----CCEEEEEEcCC--cEEEcCEEEEccC
Q 008915 188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTY-----ENAAVLLLAEG--KILSSHLIIDAMG 258 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-----~dgv~V~~~dG--~~i~ArlVI~ADG 258 (549)
...+..+..... .+ ...+.+...+.+.+.|++++.+. ++.++.+ ++.+.|.+++| .++++|.||-|+|
T Consensus 75 -~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATG 151 (472)
T PRK05976 75 -GPALDFAKVQER-KDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATG 151 (472)
T ss_pred -CCccCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCC
Confidence 000000000000 00 01122333344556688988874 3334322 22677777676 4799999999999
Q ss_pred CCh
Q 008915 259 NFS 261 (549)
Q Consensus 259 ~~S 261 (549)
...
T Consensus 152 s~p 154 (472)
T PRK05976 152 SRP 154 (472)
T ss_pred CCC
Confidence 865
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.2e-05 Score=83.95 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE----EEEEEcCCc-EE-EcCEEEEccCCChH
Q 008915 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK-IL-SSHLIIDAMGNFSP 262 (549)
Q Consensus 203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg----v~V~~~dG~-~i-~ArlVI~ADG~~S~ 262 (549)
+...|...|.+++.+.|++++.++.++++..++++ |.+...+++ ++ .+|-||-|+|..+.
T Consensus 212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 44556777888898899999999999999775432 333333454 34 45888888887775
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=87.50 Aligned_cols=137 Identities=20% Similarity=0.159 Sum_probs=70.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCCCCccc-cCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEW-NISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~~~r~~-~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+||||||||| .|..+|..+|++|++|+||||.+ +.+.+-.+ -+....+... ..+.. .++.. ..+ .+.+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~--a~~~~--~~~~~--~~~---g~~~ 74 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHV--AKVIE--EAKAL--AEH---GIVF 74 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHH--HHHHH--HHhhh--hhc---Cccc
Confidence 6999999976 57788889999999999999874 44432111 1222211110 00000 00000 000 0000
Q ss_pred cCCcccccccccc---ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILN---LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~---~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~S 261 (549)
. ...+..+.... -.+ ..+...+.+.+.+.|++++.++.. ..++..+.|+..+| .++++|.||-|+|...
T Consensus 75 ~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gV~~~~g~a~---~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 75 G-EPKIDIDKMRARKEKVV--KQLTGGLAGMAKGRKVTVVNGLGK---FTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred C-CCCcCHHHHHHHHHHHH--HHHHHHHHHHHHhCCCEEEEEEEE---EccCCEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence 0 00000000000 000 112223334455678999877532 23455677776566 4799999999999753
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.7e-05 Score=83.52 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=32.2
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.++||||||+| +|+++|+.++++|.+|+||||....+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 36999999965 68899999999999999999997644
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.4e-05 Score=82.45 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEEC------CEEE-EEE---cCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE------NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~------dgv~-V~~---~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++.+. +++++.++.++++..++ +.++ |.+ .+|+ .+.|+.||.|+|..+.+
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCC
Confidence 35677788888765 78999999999997653 3322 222 2344 68999999999998854
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.1e-05 Score=83.45 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE-EEEc-CCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~-dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++.+. |++++.++.++++..+++.++ |.+. ++. ++.|+-||.|+|..+.
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 45777888888765 889999999999876655332 2222 332 6999999999999763
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4e-05 Score=83.91 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=32.5
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (549)
-+||||||||| +|.++|..|++.|++|+|||+....+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGt 43 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGT 43 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccc
Confidence 37999999976 588888899999999999999866553
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=6e-05 Score=84.38 Aligned_cols=57 Identities=14% Similarity=0.328 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEE-cCCc--EEEcC-EEEEccCCChH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSSH-LIIDAMGNFSP 262 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~-~dG~--~i~Ar-lVI~ADG~~S~ 262 (549)
.+...|.+++++.|++++.+++++++..+++.|+ |.+ .+|+ +++|+ -||-|+|..+.
T Consensus 209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 209 ALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 3556777888889999999999999988765433 222 2443 58895 67778887765
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00012 Score=78.19 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=57.6
Q ss_pred cceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCE-EEEEEcC---C--cEEEcCEEEEccCCChH-HHHHhcCC
Q 008915 199 NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA-AVLLLAE---G--KILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 199 ~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg-v~V~~~d---G--~~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
+.-||-..|-+.|.+.+.+. |++++.+++|+++.+.+|+ +.|++.| | .+++||+|+..-|..|- +.+..+++
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~ 254 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP 254 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCCh
Confidence 34578888899999999887 8899999999999998887 8888743 3 38999998777777764 67767664
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.4e-05 Score=84.35 Aligned_cols=30 Identities=30% Similarity=0.311 Sum_probs=27.1
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
||||||| +|+++|+.+++.|.+|+||||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6899965 69999999999999999999987
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.7e-05 Score=82.89 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=31.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+|||+||||| +|+++|..|+++|++|+|||+....+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG 40 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGG 40 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhh
Confidence 6999999976 58888889999999999999976555
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.8e-05 Score=86.13 Aligned_cols=37 Identities=35% Similarity=0.402 Sum_probs=32.0
Q ss_pred CcccEEEEcchHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.++||||||+|+|+++|+.+|+.|.+|+||||....+
T Consensus 6 ~~~DVvVVG~GaGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 6 EEVDVLVAGSGGGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred CccCEEEECchHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 3799999995588889999999999999999987643
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.6e-05 Score=85.00 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc-CCc--EEEc-CEEEEccCCChHHH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSS-HLIIDAMGNFSPVV 264 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~-dG~--~i~A-rlVI~ADG~~S~vr 264 (549)
.+...|.+++++.|++++.+++++++..+++.++ |.+. +++ ++.| +-||-|+|..+.-.
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~ 285 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHP 285 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCH
Confidence 4667788889889999999999999987655443 3332 343 5786 78889999888743
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.9e-05 Score=83.72 Aligned_cols=137 Identities=20% Similarity=0.161 Sum_probs=79.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
-|+||||| .|+++|..|.+.|+.|+++||....+ +.|..+...-. ....++ +.... ......+.|.+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG--G~W~~~~~~~~--g~~~~y-----~sl~~-n~sk~~~~fsd-- 70 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG--GLWRYTENPED--GRSSVY-----DSLHT-NTSKEMMAFSD-- 70 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS--GGGCHSTTCCC--SEGGGS-----TT-B--SS-GGGSCCTT--
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC--ccCeeCCcCCC--Cccccc-----cceEE-eeCchHhcCCC--
Confidence 38999976 58888889999999999999998766 23432110000 000001 11100 00011122221
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEECC-----EEEEEEcC-Cc--EEEcCEEEEccCCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN-----AAVLLLAE-GK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d-----gv~V~~~d-G~--~i~ArlVI~ADG~~ 260 (549)
+..|....--.....+.+.|...+..-+. .+..+|+|++++..+| .+.|++++ |+ +-..|.||.|+|.+
T Consensus 71 -fp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 71 -FPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp -S-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred -cCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence 11111111124567888999998887666 7899999999998754 58888764 43 34578899999998
Q ss_pred h
Q 008915 261 S 261 (549)
Q Consensus 261 S 261 (549)
+
T Consensus 150 ~ 150 (531)
T PF00743_consen 150 S 150 (531)
T ss_dssp S
T ss_pred C
Confidence 7
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.4e-05 Score=82.72 Aligned_cols=38 Identities=34% Similarity=0.495 Sum_probs=32.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
+||||||||| .|.++|..++++|++|+||||....+.+
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c 43 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTC 43 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCce
Confidence 6999999976 5888888999999999999998766643
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=60.07 Aligned_cols=78 Identities=24% Similarity=0.302 Sum_probs=60.9
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~~ 191 (549)
|+|+||| .|+-+|..|++.|.+|.||++.+.+.. .
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~------------------~-------------------------- 37 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP------------------G-------------------------- 37 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST------------------T--------------------------
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh------------------h--------------------------
Confidence 7899976 599999999999999999998763210 0
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC
Q 008915 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG 245 (549)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG 245 (549)
++ ..+.+.+.+.+++.|++++.++.++++..+++++.|+++||
T Consensus 38 ----------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 38 ----------FD-PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp ----------SS-HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred ----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 00 12344556677788999999999999999998877888775
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.9e-05 Score=82.31 Aligned_cols=33 Identities=30% Similarity=0.284 Sum_probs=28.7
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEcc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVER 140 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr 140 (549)
..+||||||||| .|..+|..++++|.+|+|||+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 337999999976 577888899999999999997
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0002 Score=80.81 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEEC---C---EEEE-EEcCCc--EEEcCEEEEccCCCh
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYE---N---AAVL-LLAEGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~---d---gv~V-~~~dG~--~i~ArlVI~ADG~~S 261 (549)
.+.+.|...+.+.++++++++.++++..++ + |+.+ ...+|+ ++.|+.||-|+|..+
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 445566666666678999999999998765 2 2333 223454 689999999999976
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.6e-05 Score=80.38 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=87.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.-+|+|||+| +|+++|..|.+.|+.|.++||....+. -|..+..+- .+.-+ -.++. .......-+.|.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG--lW~y~~~~~-----~~~ss--~Y~~l-~tn~pKe~~~~~d 75 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG--LWKYTENVE-----VVHSS--VYKSL-RTNLPKEMMGYSD 75 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc--eEeecCccc-----ccccc--hhhhh-hccCChhhhcCCC
Confidence 4689999965 699999999999999999999987652 233221100 00000 00000 0000001111111
Q ss_pred Ccccccc-ccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEEC-CEEEEEEcCC----cEEEcCEEEEccCCC
Q 008915 189 KGEIWVE-DILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE-NAAVLLLAEG----KILSSHLIIDAMGNF 260 (549)
Q Consensus 189 ~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~-dgv~V~~~dG----~~i~ArlVI~ADG~~ 260 (549)
+..+ +..++.-+...+.+.|.+.|+.-+. .+..++++..+.... +.+.|.+.++ .+.-+|.||.|+|.+
T Consensus 76 ---fpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 76 ---FPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred ---CCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 1111 1122334556888999998887765 889999999998877 6888888653 378899999999999
Q ss_pred h
Q 008915 261 S 261 (549)
Q Consensus 261 S 261 (549)
.
T Consensus 153 ~ 153 (448)
T KOG1399|consen 153 V 153 (448)
T ss_pred C
Confidence 5
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.6e-05 Score=83.07 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=29.2
Q ss_pred cccEEEEcchHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 110 ~yDVIIVGGg~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
+|||||||||+|+..| +++..|.+|+||||....+.+
T Consensus 2 ~yD~vvIG~G~~g~~a-a~~~~g~~V~lie~~~~GGtC 38 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIP-DPRFADKRIAIVEKGTFGGTC 38 (452)
T ss_pred CcCEEEECCCHHHHHH-HHHHCCCeEEEEeCCCCCCee
Confidence 5999999988765555 345579999999998877654
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=78.40 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEEC-CEEE--EEEc-CCcEEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV--LLLA-EGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv~--V~~~-dG~~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++++.|++++.+++++++..++ ++.+ |... ++.+++||-||.|+|..+.-
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n 185 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGAN 185 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccC
Confidence 3577888899999999999999999998763 3333 2333 34589999999999987653
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00021 Score=86.42 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=31.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.++|||||||| +|+++|+.+++.|.+|+||||.+..+
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 36999999965 68889999999999999999987654
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=80.86 Aligned_cols=31 Identities=39% Similarity=0.515 Sum_probs=28.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVER 140 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr 140 (549)
+||||||||| +|+++|..+++.|.+|+|||+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 6999999975 588899999999999999998
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.5e-05 Score=81.35 Aligned_cols=37 Identities=41% Similarity=0.553 Sum_probs=30.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccC-CCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKGR 146 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~-~~~~~ 146 (549)
+|||+||||| +|..+|..++++|++|+|||+. .+.+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~ 41 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGT 41 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeee
Confidence 5999999965 5888888999999999999974 45443
|
|
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=77.91 Aligned_cols=205 Identities=17% Similarity=0.195 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE--EEEcC---Cc--EEEcCEEEEccCCChHHHHHhcCCCCCCcee
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLAE---GK--ILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC 277 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~~~d---G~--~i~ArlVI~ADG~~S~vrrql~~~~~~~~~~ 277 (549)
.++.-.+.=-|..+|+.+.-..+|.++..++++-+ +.+.| |+ +|+|+.||-|+|..|---+++.-...+.-.|
T Consensus 224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~~ 303 (680)
T KOG0042|consen 224 ARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPICV 303 (680)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccCceec
Confidence 34444444455567999999999999988877633 22222 54 7999999999999987555554332111122
Q ss_pred eEEeEee--eccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCC-------CCcc---cHHH
Q 008915 278 LVVGSCA--RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-------AGSP---KLEE 345 (549)
Q Consensus 278 ~~vg~~~--~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~-------~~~~---~L~~ 345 (549)
+..|+.. -+|-.+. ..+-+.|...+++-.| .+|=. + .+...+.+.+. +... ++.+
T Consensus 304 pSsGvHIVlP~yY~P~------~mGlldP~TsDgRViF--flPWq-g----~TIaGTTD~pt~v~~~P~PtE~dIqfIL~ 370 (680)
T KOG0042|consen 304 PSSGVHIVLPGYYCPE------NMGLLDPKTSDGRVIF--FLPWQ-G----KTIAGTTDIPTSVTHSPTPTEDDIQFILK 370 (680)
T ss_pred cCCceeEEcccccCCc------ccccccCCCCCCcEEE--EeccC-C----ceeeccCCCCCCCCCCCCCCHHHHHHHHH
Confidence 2222111 0110000 0111222222233333 24543 2 22333333221 1112 3334
Q ss_pred HHHHHHHhCcccccccCCceeEeeeeeeeeccccCC-----CCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHH
Q 008915 346 LLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS-----PLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLST 420 (549)
Q Consensus 346 l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~-----~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~ 420 (549)
....|+...+++++.+ + ...=.|+-|+.... ....++++++.+|+..-. -++ +|==...|+ +||
T Consensus 371 ev~~yl~~~~~VrR~D---V--lsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLi--TIa-GGKWTTyR~---MAE 439 (680)
T KOG0042|consen 371 EVQHYLSFDVEVRRED---V--LSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLI--TIA-GGKWTTYRH---MAE 439 (680)
T ss_pred HHHHhhCCCcccchhh---h--HHHhhCCcccccCCCccccchhhhhhceEEecCCCeE--EEe-cCcchhHHH---HHH
Confidence 4445555555555431 1 11112455555421 124678999999997543 233 343345554 565
Q ss_pred -HHHHHHhCCCCCh
Q 008915 421 -GVYEAVRGDFVDS 433 (549)
Q Consensus 421 -~i~~Al~~g~l~~ 433 (549)
.+..|++.+++..
T Consensus 440 eTVd~aI~~~~lk~ 453 (680)
T KOG0042|consen 440 ETVDAAIKAGDLKP 453 (680)
T ss_pred HHHHHHHHhCCCCC
Confidence 6888998887654
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00017 Score=80.64 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=28.4
Q ss_pred CCcccEEEEcchH-HHHHHHHHHhCCCcEEEEcc
Q 008915 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVER 140 (549)
Q Consensus 108 ~~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr 140 (549)
..+|||||||||+ |..+|..+|++|.+|+|||+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3469999999765 77777899999999999996
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.9e-05 Score=82.62 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHh-cCCEEEeCceEEEEEEECCE-EE----EEEcCCc--EEEcCEEEEccCCCh
Q 008915 206 KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENA-AV----LLLAEGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 206 ~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dg-v~----V~~~dG~--~i~ArlVI~ADG~~S 261 (549)
.+.+.|.+++.+ .+.+++....++++..++++ +. ..+.+|+ .++|+-||-|+|...
T Consensus 139 ~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 139 ELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 477888888877 45689999999999877664 21 2233455 688999999998765
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00035 Score=71.50 Aligned_cols=71 Identities=20% Similarity=0.335 Sum_probs=52.2
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE---------CC-----------EEEEEEcCC--cEEEcCEEEEccCC
Q 008915 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---------EN-----------AAVLLLAEG--KILSSHLIIDAMGN 259 (549)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---------~d-----------gv~V~~~dG--~~i~ArlVI~ADG~ 259 (549)
+|+-.|+..+++++...|+.+.. -+|++.+.+ ++ ++.|...|+ +++++.++|-|.|+
T Consensus 240 fdpw~LLs~~rrk~~~lGv~f~~-GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa 318 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAITLGVQFVK-GEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGA 318 (509)
T ss_pred cCHHHHHHHHHHHhhhhcceEec-ceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCc
Confidence 67888999999999988877654 456666543 22 244554443 47999999999999
Q ss_pred ChH-HHHHhcCCCCC
Q 008915 260 FSP-VVKQIRSGRKP 273 (549)
Q Consensus 260 ~S~-vrrql~~~~~~ 273 (549)
.|. |++..+++..+
T Consensus 319 ~s~QvArlAgIG~g~ 333 (509)
T KOG2853|consen 319 WSGQVARLAGIGKGP 333 (509)
T ss_pred cHHHHHHHhccCCCC
Confidence 997 88888888554
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00023 Score=75.61 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=78.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+|+||| .|+-+|..|++.|.+|.++|+.+... . . .
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l---------------------~-----~-----~---------- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL---------------------A-----S-----L---------- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc---------------------c-----h-----h----------
Confidence 369999976 59999999999999999999764210 0 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh--HHHHHh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQI 267 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S--~vrrql 267 (549)
.+ ..+...+.+.+++.|++++.+++++++..+++++.|.+.+|+++.+++||.|.|..+ .+.++.
T Consensus 181 ------------~~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~ 247 (377)
T PRK04965 181 ------------MP-PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRA 247 (377)
T ss_pred ------------CC-HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHC
Confidence 00 112344556667789999999999999887777788888898999999999999855 465655
Q ss_pred cC
Q 008915 268 RS 269 (549)
Q Consensus 268 ~~ 269 (549)
+.
T Consensus 248 gl 249 (377)
T PRK04965 248 GL 249 (377)
T ss_pred CC
Confidence 44
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.5e-05 Score=76.52 Aligned_cols=132 Identities=19% Similarity=0.217 Sum_probs=73.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-C-----C-cccc------------CCHHHHHHHHHcCCCCcccc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-R-----E-QEWN------------ISRKELLELVESGILVEDDI 171 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-~-----~-r~~~------------IS~~~l~~L~~lGl~~~~ei 171 (549)
+|+|||+| +|+++|..|+.+|+.|+|+||..-.+ + . .+|. +-...++.+.+-|+.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~---- 78 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVD---- 78 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCcee----
Confidence 69999965 69999999999999999999987532 1 1 1110 1112233444444321
Q ss_pred hhhhhhccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc-EEEc
Q 008915 172 DEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSS 250 (549)
Q Consensus 172 e~~i~~~~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~-~i~A 250 (549)
.+.+....|.+...-.......|.=++. + ..|.+ +.....+|+.+++|+.+...++.+++.+++|. ...+
T Consensus 79 ------~W~~~~~~~~~~~~~~~~d~~pyvg~pg-m-salak-~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~ 149 (331)
T COG3380 79 ------VWTPAVWTFTGDGSPPRGDEDPYVGEPG-M-SALAK-FLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQF 149 (331)
T ss_pred ------eccccccccccCCCCCCCCCCccccCcc-h-HHHHH-HHhccchhhhhhhhhhheecCCeeEEEecCCCccccc
Confidence 1112222222110000000000110111 0 12222 33345689999999999999999999997653 6777
Q ss_pred CEEEEc
Q 008915 251 HLIIDA 256 (549)
Q Consensus 251 rlVI~A 256 (549)
+.||.|
T Consensus 150 d~vvla 155 (331)
T COG3380 150 DDVVLA 155 (331)
T ss_pred ceEEEe
Confidence 777765
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00015 Score=81.27 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=31.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (549)
+||||||||| .|.++|..|+++|++|+|||+....+.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~ 135 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGT 135 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceee
Confidence 6999999976 588888899999999999999866554
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00033 Score=65.11 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=35.8
Q ss_pred cCCEE-EeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 218 LGGVI-FEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 218 ~G~~v-~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
.|++| +...+|+++...+++..|.+.+|..+.++.||-|.|+
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 35533 4567999999999999999999999999999999996
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00022 Score=77.49 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=29.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
+||||||||| +|+.+|..|+++|++|+||||.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 5999999976 58889999999999999999974
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.7e-05 Score=87.23 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEEcCEEEEccCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
.+.+.|.+.++++|++|+.+++|++|..+++ ++.+...+|..+++|.||.+...
T Consensus 225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 225 ALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 5778899999999999999999999998877 56777766778999999987766
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=77.66 Aligned_cols=33 Identities=39% Similarity=0.539 Sum_probs=29.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
+||||||||| +|.++|..|++.|++|+||||..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 6999999976 58888889999999999999985
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00019 Score=72.73 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=52.8
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE---EEEEEcC--CcEEEcCEEEEccCCChHHH-HHhcCCC
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLLAE--GKILSSHLIIDAMGNFSPVV-KQIRSGR 271 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~~d--G~~i~ArlVI~ADG~~S~vr-rql~~~~ 271 (549)
.||-..+-..+.+.+...|+.+..+-++..+.+..++ .-+.+.+ +++++++.+|.|.|-.|--. ...+...
T Consensus 192 IvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~ 268 (453)
T KOG2665|consen 192 IVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCEL 268 (453)
T ss_pred eeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCC
Confidence 4777777788888999999999999999999876653 1222223 66999999999999888644 3334443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00041 Score=81.95 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=31.3
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.++|||||||| +|+++|+.+++.|.+|+||||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 46999999965 699999999999999999999875
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0003 Score=77.03 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=32.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (549)
+||||||||| +|.++|..++++|.+|+|||+....+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~ 41 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGV 41 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 5999999976 588888899999999999999866654
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00019 Score=78.33 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=31.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+||||||||| +|.++|..|++.|++|+|||+....+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG 39 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGG 39 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccc
Confidence 5999999976 58888889999999999999965544
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00029 Score=77.11 Aligned_cols=139 Identities=19% Similarity=0.245 Sum_probs=73.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-CCHHHHHHHHHcCCCCcccchhhh-hhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEAT-ATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i-~~~~~~~~i~f~ 187 (549)
-|||||||| .|..+|..++++|.+|+||||....+.+--+. +..+.+ +....+ ++... ...+ + +...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l--~~~a~~-----~~~~~~~~~~--g-~~~~ 71 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTL--IATAEV-----RTELRRAAEL--G-IRFI 71 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHH--HHHHHH-----HHHHHHHHhC--C-cccc
Confidence 379999976 58888889999999999999987665432111 211111 100000 00000 0000 0 0000
Q ss_pred --CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEE--EECCEEEEEEcCCc--EEEcCEEEEccCC
Q 008915 188 --GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSIC--TYENAAVLLLAEGK--ILSSHLIIDAMGN 259 (549)
Q Consensus 188 --~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~--~~~dgv~V~~~dG~--~i~ArlVI~ADG~ 259 (549)
....+..+..... ++ ...+.+.+.+.+.+.|++++.++- +.++ .+++.+.|...+|+ ++++|.||-|+|.
T Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs 149 (466)
T PRK07845 72 DDGEARVDLPAVNAR-VKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA 149 (466)
T ss_pred cCcccccCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC
Confidence 0000000000000 00 011233455666677999987743 2222 45667778776775 7999999999998
Q ss_pred Ch
Q 008915 260 FS 261 (549)
Q Consensus 260 ~S 261 (549)
..
T Consensus 150 ~p 151 (466)
T PRK07845 150 SP 151 (466)
T ss_pred CC
Confidence 75
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00022 Score=77.85 Aligned_cols=37 Identities=35% Similarity=0.506 Sum_probs=28.2
Q ss_pred cccEEEEcchHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 110 ~yDVIIVGGg~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
+|||||||||+|+..|+ ++..|.||+||||....+.+
T Consensus 1 ~yD~vVIG~G~~g~~aa-~~~~G~~V~lie~~~~GGtC 37 (451)
T PRK07846 1 HYDLIIIGTGSGNSILD-ERFADKRIAIVEKGTFGGTC 37 (451)
T ss_pred CCCEEEECCCHHHHHHH-HHHCCCeEEEEeCCCCCCcc
Confidence 49999999887555443 34569999999998776644
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00063 Score=73.56 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=35.6
Q ss_pred EEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 221 ~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
+|+.+++|++|..+++++.|.+++|+++.||.||.|.-..
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~ 274 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHP 274 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHH
Confidence 7999999999999888988888888899999999987643
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.3e-05 Score=81.29 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=78.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC-CCCccccCC-----HH-HHHHHHHcCCCCcccchhhhhhccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQEWNIS-----RK-ELLELVESGILVEDDIDEATATKFNP 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~-~~~r~~~IS-----~~-~l~~L~~lGl~~~~eie~~i~~~~~~ 181 (549)
+||||||||| +|+-+|++.||.|.+++|+=-+... +... +|-+ .+ -+.+.+.||=. +-..+ + .
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~ms-CNPaIGG~~KG~lvrEIDALGG~----Mg~~~--D--~ 74 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMS-CNPAIGGPGKGHLVREIDALGGL----MGKAA--D--K 74 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecc-cccccCCcccceeEEeehhccch----HHHhh--h--h
Confidence 5999999988 7999999999999999999755321 1100 1111 10 01122222210 00000 0 0
Q ss_pred Cccccc--C--Ccc-ccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEECCE--EEEEEcCCcEEEcCEE
Q 008915 182 NRCGFE--G--KGE-IWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENA--AVLLLAEGKILSSHLI 253 (549)
Q Consensus 182 ~~i~f~--~--~~~-l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dg--v~V~~~dG~~i~ArlV 253 (549)
..+.|. + +.+ ++.+ -..+|+....+++.+.+..... +++ ...|+++..+++. +-|.+++|..+.|+.|
T Consensus 75 ~~IQ~r~LN~sKGPAVra~---RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~aV 150 (621)
T COG0445 75 AGIQFRMLNSSKGPAVRAP---RAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKAV 150 (621)
T ss_pred cCCchhhccCCCcchhcch---hhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCEE
Confidence 111110 0 111 1111 1235666666777777766544 555 4567788775553 4467778999999999
Q ss_pred EEccCCC
Q 008915 254 IDAMGNF 260 (549)
Q Consensus 254 I~ADG~~ 260 (549)
|-++|.+
T Consensus 151 VlTTGTF 157 (621)
T COG0445 151 VLTTGTF 157 (621)
T ss_pred EEeeccc
Confidence 9999976
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.8e-05 Score=80.64 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=74.4
Q ss_pred cccEEEEc-chHHHHHHHHHHhCC-CcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCC-Ccccc
Q 008915 110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCGF 186 (549)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LAr~G-lrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~-~~i~f 186 (549)
.||+|+|| ||.++++|++|...+ ++++.+||.+...-+.++-+....++. -. +++... -.+| ...+|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~----~f-----l~Dlvt-~~~P~s~~sf 71 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQV----SF-----LKDLVT-LRDPTSPFSF 71 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-----T-----TSSSST-TT-TTSTTSH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCcccc----cc-----ccccCc-CcCCCCcccH
Confidence 59999999 667999999998765 999999998765443333222221110 00 111110 0111 11122
Q ss_pred cC----Cccccccccc-cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC----EEEEEEc----CCcEEEcCEE
Q 008915 187 EG----KGEIWVEDIL-NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLA----EGKILSSHLI 253 (549)
Q Consensus 187 ~~----~~~l~~~~~l-~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~~~----dG~~i~ArlV 253 (549)
.+ ...+..-.-. ..-..+..+.+.|...+.+.+..+..+++|++|...++ .+.|++. +++++.||-|
T Consensus 72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~v 151 (341)
T PF13434_consen 72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNV 151 (341)
T ss_dssp HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEE
T ss_pred HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeE
Confidence 11 1111100000 12256777888887777666766999999999987654 4788873 2458999999
Q ss_pred EEccCCC
Q 008915 254 IDAMGNF 260 (549)
Q Consensus 254 I~ADG~~ 260 (549)
|-|.|..
T Consensus 152 Vla~G~~ 158 (341)
T PF13434_consen 152 VLATGGQ 158 (341)
T ss_dssp EE----E
T ss_pred EECcCCC
Confidence 9999933
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.6e-05 Score=72.82 Aligned_cols=113 Identities=20% Similarity=0.212 Sum_probs=66.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
|||||||| +|+++|..|++.|++|+|+|+.+...... ..++.. .+ ... .
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~-~~~~~~---~~--------------~~~------------~ 50 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNS-GCIPSP---LL--------------VEI------------A 50 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHH-SHHHHH---HH--------------HHH------------H
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccc-cccccc---cc--------------ccc------------c
Confidence 79999976 58889999999999999998765311000 000000 00 000 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-----EEE---EcCCcEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-----VLL---LAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-----~V~---~~dG~~i~ArlVI~ADG~~S 261 (549)
. .... ... ..+. .+.+++...+++++.++++.+++.....+ .+. ..++.++.++.||.|+|..+
T Consensus 51 ~--~~~~---~~~-~~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 51 P--HRHE---FLP-ARLF-KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP 122 (201)
T ss_dssp H--HHHH---HHH-HHHG-HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred c--cccc---ccc-cccc-ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence 0 0000 000 0000 33444555678998889999998877642 232 12355899999999999654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00018 Score=78.63 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=31.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (549)
||||||||| .|.++|..++++|++|+||||....+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~ 37 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGT 37 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCC
Confidence 799999976 588888899999999999999876664
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00076 Score=71.86 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=39.9
Q ss_pred HHHHHHHh-cCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEcc
Q 008915 210 IVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 210 ~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~AD 257 (549)
.|.+++.+ .+..|..+.+|..|.+++++|+|++.+..+++||++|.+-
T Consensus 210 ~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~ti 258 (450)
T COG1231 210 QLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTI 258 (450)
T ss_pred HHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEec
Confidence 45555544 4679999999999999999999999775689999999764
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00065 Score=81.06 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=67.8
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
..+||+||||| +|+++|..+++.|++|+|+|+.+.++.. +.. ... ...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~----~~~-------------------------~~~--~~~ 210 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS----LLS-------------------------EAE--TID 210 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCe----eec-------------------------ccc--ccC
Confidence 36899999965 6999999999999999999998654310 000 000 000
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEE-E--------cC---C--cEEEcCE
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLL-L--------AE---G--KILSSHL 252 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~-~--------~d---G--~~i~Arl 252 (549)
..+...+...+.+++.+.+ ++++.+++|.++..+..-..+. . .. + .+++++-
T Consensus 211 -------------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~ 277 (985)
T TIGR01372 211 -------------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKR 277 (985)
T ss_pred -------------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCE
Confidence 0122334444666666664 7999999998874321111111 0 00 1 1689999
Q ss_pred EEEccCCCh
Q 008915 253 IIDAMGNFS 261 (549)
Q Consensus 253 VI~ADG~~S 261 (549)
||-|+|..-
T Consensus 278 VILATGa~~ 286 (985)
T TIGR01372 278 VVLATGAHE 286 (985)
T ss_pred EEEcCCCCC
Confidence 999999863
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00072 Score=72.39 Aligned_cols=96 Identities=17% Similarity=0.290 Sum_probs=72.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+.+- . ..
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l---------------------~---------~~------------ 183 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVM---------------------G---------RN------------ 183 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch---------------------h---------hh------------
Confidence 59999976 59999999999999999999764210 0 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
. ...+.+.+.+.+.+.|++++.+++++++.. ++.+.+.+++|+++.|++||.|.|....
T Consensus 184 -----------~-~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 184 -----------A-PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred -----------c-CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChh
Confidence 0 012234455666778999999999999865 5567778888889999999999998654
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00049 Score=73.92 Aligned_cols=147 Identities=16% Similarity=0.271 Sum_probs=84.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-------CCH------HHHHHHH-HcCCCCcccchhhhh
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-------ISR------KELLELV-ESGILVEDDIDEATA 176 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-------IS~------~~l~~L~-~lGl~~~~eie~~i~ 176 (549)
||+|||+| +|+++|+.|++. ++|+||-|.+.......|+ ++. .....|. --|+-++..++.++.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 99999976 599999999998 9999999998764222221 111 1111221 113332211111110
Q ss_pred hcc------CCCcccccCCc---------------c-ccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEE
Q 008915 177 TKF------NPNRCGFEGKG---------------E-IWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICT 233 (549)
Q Consensus 177 ~~~------~~~~i~f~~~~---------------~-l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~ 233 (549)
... -...+.|+... . ++..+. --..+...|.+++++ .++++++++.+.++..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~-----TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~ 162 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADA-----TGKEIMTALLKKVRNRPNITVLEGAEALDLII 162 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCC-----ccHHHHHHHHHHHhcCCCcEEEecchhhhhhh
Confidence 000 00112222111 0 111111 113567788888887 4779999999999998
Q ss_pred ECC-EE---EEEEcCC--cEEEcCEEEEccCCChHHH
Q 008915 234 YEN-AA---VLLLAEG--KILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 234 ~~d-gv---~V~~~dG--~~i~ArlVI~ADG~~S~vr 264 (549)
+++ ++ .+...++ .+++|+.||-|+|.-+.+=
T Consensus 163 ~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 163 EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred cCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence 888 33 3332223 4799999999999887654
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00012 Score=74.87 Aligned_cols=110 Identities=23% Similarity=0.278 Sum_probs=75.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.|||+||||| +|.++|...||+|+|.-|+-. .|.+. .|+.++ ||.+|...
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae-rfGGQ------------vldT~~------IENfIsv~---------- 261 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE-RFGGQ------------VLDTMG------IENFISVP---------- 261 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhh-hhCCe------------eccccc------hhheeccc----------
Confidence 5999999965 699999999999999977642 23331 122222 33332211
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE---CCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.+ +-.+|-..|.++.++..+++..-.+.+.+... ++-..|++++|..+++|-||-++|+.
T Consensus 262 ----~t--------eGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 262 ----ET--------EGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred ----cc--------cchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 11 11356777888888888877777677776652 44678999999999999999999975
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=72.20 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=75.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... ..
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~~---------------------- 213 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL---------------------SF---------------------- 213 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------Cc----------------------
Confidence 59999976 59999999999999999999764210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+| ..+.+.|.+.+++.|++++.+++++++..+++++.+++++|+++.++.||.|.|.....
T Consensus 214 -----------~d-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 214 -----------LD-DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred -----------CC-HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 00 11234455666678999999999999988777888888778899999999999988654
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=7.6e-05 Score=81.01 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCE--EEEEEcCCcEEEcCEEEEccCCC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
|-+.|.+.++..|++++.+++|++|..++++ +.|++++|++++||.||......
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc
Confidence 4455666667789999999999999887654 45777789999999999855554
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.7e-05 Score=81.79 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChHHHHHh
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQI 267 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~vrrql 267 (549)
.+.+.|.+.+++.|++++.+++|++|..+++. ..|.+++|++++|+.||.|.|....+.+.+
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 46678888899999999999999999877654 346677888899999999999887776544
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0011 Score=73.02 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=28.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
+||||||||| .|..+|..+++.|.+|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5999999976 5778888999999999999974
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00082 Score=74.05 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=27.5
Q ss_pred cccEEEEcchH-HHHHHHHHHhC-CCcEEEEccC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFK-GLRVAIVERN 141 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~-GlrVlLIEr~ 141 (549)
+|||||||||+ |..+|..+|++ |.+|+||||.
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 69999999775 66677799996 9999999984
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00016 Score=57.61 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=26.8
Q ss_pred EEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 115 VCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 115 IVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
||||| .|+++|..|+++|++|+|+||+..++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 78976 59999999999999999999998765
|
... |
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00012 Score=74.75 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=27.5
Q ss_pred ccEEEEcchH-HHHHHHHHHhCC-CcEEEEccCCC
Q 008915 111 FDVIVCGGTL-GIFIATALSFKG-LRVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~G-lrVlLIEr~~~ 143 (549)
||+||||+|+ |+++|..|++.| .+|+|||+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 8999999765 778899999997 79999999875
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0013 Score=72.33 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=31.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccC-CCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~-~~~~ 145 (549)
.+||||||||| .|..+|..|+++|.+|+||||. ...+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG 53 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG 53 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee
Confidence 36999999976 5888888999999999999997 4444
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0015 Score=72.29 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
+||||||||| +|.++|..++++|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 6999999975 5888888999999999999973
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0013 Score=74.74 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=31.2
Q ss_pred CCcccEEEEcchH-HHHHHHHHHhCCCcEEEEccC--CCCCC
Q 008915 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVERN--TLKGR 146 (549)
Q Consensus 108 ~~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~--~~~~~ 146 (549)
+.+|||||||||+ |..+|..+++.|.+|+|||+. ...+.
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGt 155 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGT 155 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccc
Confidence 3479999999765 667777999999999999975 44553
|
|
| >TIGR02352 thiamin_ThiO glycine oxidase ThiO | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.014 Score=60.30 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=54.4
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChHH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
..+++..+...|.+.+.+.|++++.+++|+++..+++++. |.+.+| +++|+.||.|+|..|+-
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 3579999999999999999999999999999998777654 565555 79999999999998863
|
This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. |
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0028 Score=69.27 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=73.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... .. +
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~~-----------------~---- 211 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL---------------------PG-----------------E---- 211 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC---------------------Cc-----------------C----
Confidence 58999976 58889999999999999999864210 00 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC---cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG---~~i~ArlVI~ADG~~S~v 263 (549)
+ ..+.+.+.+.+.+.|++++.+++++++..+++++.+.+.++ +++.++.||-|.|.....
T Consensus 212 ------------~-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 212 ------------D-KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred ------------C-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 0 11223445566678999999999999988777887777665 679999999999987653
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0018 Score=70.53 Aligned_cols=38 Identities=37% Similarity=0.553 Sum_probs=32.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccC-CCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKGRE 147 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~-~~~~~~ 147 (549)
+||+||+||| .|-.+|..+|+.|.+|+|+|+. ...+.+
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtC 43 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTC 43 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceE
Confidence 7999999976 5777888999999999999999 566644
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0023 Score=69.89 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=30.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE 147 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (549)
+||||||| .|.++|..+++.|.+|+||||....+.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c 38 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTC 38 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccC
Confidence 69999976 5777888999999999999998776643
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00064 Score=80.37 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=62.6
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
..+|+|||| |+|+++|..|+++|++|+|+|+...++ |++. |.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G------------------G~l~-----------yG-------- 348 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG------------------GVLR-----------YG-------- 348 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC------------------ceEE-----------cc--------
Confidence 478999995 579999999999999999999876433 1110 10
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.|+ +..+. .+.+...+.+++.|+++..++.+ +..+++++......|.||-|.|+..
T Consensus 349 -----IP~---~rlp~-~vi~~~i~~l~~~Gv~f~~n~~v--------G~dit~~~l~~~~yDAV~LAtGA~~ 404 (944)
T PRK12779 349 -----IPE---FRLPN-QLIDDVVEKIKLLGGRFVKNFVV--------GKTATLEDLKAAGFWKIFVGTGAGL 404 (944)
T ss_pred -----CCC---CcChH-HHHHHHHHHHHhhcCeEEEeEEe--------ccEEeHHHhccccCCEEEEeCCCCC
Confidence 000 00111 22233345666779998887654 2234554444456899999999863
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0034 Score=68.39 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=73.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+.+- . .+
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------------~----------~~----------- 206 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL---------------------R----------GF----------- 206 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc---------------------c----------cc-----------
Confidence 58999976 59889999999999999999764210 0 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+ ..+.+.+.+.+++.|++++.+++++++..++++ +.|.+.+|+++.++.||.|.|.....
T Consensus 207 ------------~-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 207 ------------D-PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred ------------C-HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 0 012234555667789999999999999876665 77777788899999999999987654
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0018 Score=70.32 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=66.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCC--CcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G--lrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.||||||| +|+++|..|++.| .+|+|||+.+......+ ++. .+...
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~--------------~~~-----------~~~~~------ 50 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGAC--------------GLP-----------YFVGG------ 50 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecC--------------CCc-----------eEecc------
Confidence 58999976 5888888998874 58999999864321000 000 00000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc-CCcEEE--cCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILS--SHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-dG~~i~--ArlVI~ADG~~S 261 (549)
.. -++..+.....+.+.+.|++++.+++|++++.++..+.+... ++++++ +|.||-|+|...
T Consensus 51 ---~~--------~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 51 ---FF--------DDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred ---cc--------CCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 00 000111111223344568899999999999887777766542 355666 999999999864
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0053 Score=67.26 Aligned_cols=97 Identities=20% Similarity=0.280 Sum_probs=74.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++|+.+... ..
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l---------------------~~---------------------- 215 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL---------------------PG---------------------- 215 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC---------------------CC----------------------
Confidence 58999976 59989999999999999999754210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+...+.+.+.+.|++++.+++++++..+++++.|.+.+|+++.++.||-|.|.....
T Consensus 216 -----------~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 216 -----------ED-ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred -----------CC-HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 00 01223455566678999999999999987777888888788899999999999987664
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00037 Score=76.76 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcCC-----cEEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEG-----KILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~dG-----~~i~ArlVI~ADG~~ 260 (549)
.|-+.|.+.+++.|++|+.+++|++|..+++.+ .|.+.++ +++.||.||-+.-..
T Consensus 233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 466778888888899999999999999887743 2333333 579999999887653
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.019 Score=60.93 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=56.0
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+++..+...|.+.+.+ |++++++++|++++.+++++.|++.+|.+++|+.||.|.|.+|.
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 357999999999999988 99999999999999888888888878878999999999999985
|
In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0062 Score=67.37 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=73.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+++.+.+-. .
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~--------------------------------------~----- 241 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR--------------------------------------G----- 241 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc--------------------------------------c-----
Confidence 58999976 588888889999999999987542100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+.+.|++++.+++++++..+++++.+.+.+|+++.++.||-|.|.....
T Consensus 242 -----------~d-~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 242 -----------FD-DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 00 11233445566678999999999999987777888887778889999999999987654
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0061 Score=66.36 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=72.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+..- . .
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------------------~---------------------~- 204 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL---------------------R---------------------G- 204 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC---------------------c---------------------c-
Confidence 48999976 58888989999999999998754210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+.+.|++++.+++++++..+++++.|.+.+|+++.++.||-|.|.....
T Consensus 205 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 205 -----------FD-DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 00 11223445566678999999999999987777777887778899999999999987554
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.001 Score=72.89 Aligned_cols=36 Identities=31% Similarity=0.284 Sum_probs=31.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..||+||||| +|+++|..|+++|++|+|+|+...++
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G 176 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG 176 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 5899999965 69999999999999999999876443
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0011 Score=70.51 Aligned_cols=138 Identities=21% Similarity=0.287 Sum_probs=73.2
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC-CCCCcc----ccCCHH----HHHHHHHcCCCCcccchhhhhh
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQE----WNISRK----ELLELVESGILVEDDIDEATAT 177 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~-~~~~r~----~~IS~~----~l~~L~~lGl~~~~eie~~i~~ 177 (549)
...||||||||| +|+-+|++.||.|-+.+|+-.+-. .+...| .+|..+ |+..|. |+ ...
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALd--Gl---------~~r 94 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALD--GL---------CSR 94 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhc--ch---------Hhh
Confidence 347999999988 799999999999999999976532 111100 012111 111111 11 110
Q ss_pred ccCCCcccccC-----CccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCE------EEEEEcCC
Q 008915 178 KFNPNRCGFEG-----KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA------AVLLLAEG 245 (549)
Q Consensus 178 ~~~~~~i~f~~-----~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg------v~V~~~dG 245 (549)
-.....+.|.- +..+|.+ -..+|+......+.+.+... ..+|+++ .|.++...+.. .-|.+.||
T Consensus 95 vcD~s~vq~k~LNrs~GPAVwg~---RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dg 170 (679)
T KOG2311|consen 95 VCDQSGVQYKVLNRSKGPAVWGL---RAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDG 170 (679)
T ss_pred hhhhhhhhHHHhhccCCCcccCh---HHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecC
Confidence 00001111110 1112221 12356655555555555443 3366655 45555543221 12455689
Q ss_pred cEEEcCEEEEccCCC
Q 008915 246 KILSSHLIIDAMGNF 260 (549)
Q Consensus 246 ~~i~ArlVI~ADG~~ 260 (549)
..+.|+-||--+|.+
T Consensus 171 t~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 171 TVVYAESVILTTGTF 185 (679)
T ss_pred cEeccceEEEeeccc
Confidence 999999999999976
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0027 Score=66.94 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=35.2
Q ss_pred HHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 213 KRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 213 ~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
+.+.+.|++++.+ +|++++.+.. +|.+++|++++.|.||-|+|...
T Consensus 62 ~~~~~~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 62 RLARQAGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHhcCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence 3444568888765 7888876655 56667888899999999999765
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0069 Score=66.07 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=73.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+.+-. .
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-------------------------------~------------ 204 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-------------------------------S------------ 204 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-------------------------------c------------
Confidence 58999987 599999999999999999997642110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCC-cEEEcCEEEEccCCChHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG-KILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG-~~i~ArlVI~ADG~~S~vr 264 (549)
+| ..+.+.+.+.+.+.|++++.++.++++..++++ +.+.+++| +++.++.||-|.|......
T Consensus 205 -----------~d-~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 205 -----------FD-SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -----------cC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 00 112344556667789999999999999876554 66777677 5799999999999886643
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0075 Score=65.42 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=71.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- .. .
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l---------------------~~---------------------~ 196 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL---------------------PR---------------------E 196 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC---------------------CC---------------------C
Confidence 59999976 59999999999999999999864210 00 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+ ..+...+.+.+++.|++++.+++++++..+++.+.+.. +++++.++.||-|.|.....
T Consensus 197 ------------~-~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 197 ------------E-PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred ------------C-HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence 0 01223345566678999999999999987666666654 56789999999999987653
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0068 Score=66.35 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=71.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+..- +.
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l---------------------~~---------------------- 210 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL---------------------PN---------------------- 210 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------Cc----------------------
Confidence 58999976 59999999999999999998654100 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc--CC--cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--dG--~~i~ArlVI~ADG~~S~v 263 (549)
.| ..+.+.+.+.+.+.|++++.+++++++..+++.+.+.+. +| +++.++.||.|.|....+
T Consensus 211 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 211 -----------ED-AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 00 112234556667789999999999999876666666554 56 379999999999987654
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0027 Score=67.91 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=67.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC--cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.+||||||| +|+.+|..|+++|. +|+|||+.+.....+. .++.. .+ ... .
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-~l~~~---~~---------------~~~-----~--- 56 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-PLSKS---ML---------------LED-----S--- 56 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-CCCHH---HH---------------CCC-----C---
Confidence 479999976 58888889999886 7999998765332221 12211 00 000 0
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
..... ..+. +...+.+++++.++.|+.++.+.. .|.+++|+++.+|.||-|+|...
T Consensus 57 -~~~~~-------~~~~--------~~~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 57 -PQLQQ-------VLPA--------NWWQENNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred -ccccc-------cCCH--------HHHHHCCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence 00000 0011 112346899999999999876543 45566788999999999999875
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=65.67 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CC--EEE--EEEc-CCc-----EEEcCEEEEccCCC
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-EN--AAV--LLLA-EGK-----ILSSHLIIDAMGNF 260 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~d--gv~--V~~~-dG~-----~i~ArlVI~ADG~~ 260 (549)
+.|..-|.+.+++.|++++.+++|+++..+ ++ +.+ |.+. +|+ ...+|+||.+.|..
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 456678888999999999999999999875 22 322 3332 232 46899999999954
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00062 Score=76.34 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=30.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHh-CCCcEEEEccCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr-~GlrVlLIEr~~~ 143 (549)
.+||+|||||| +|+.+|..||+ .|++|+|||+++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 36999999976 59999999999 7999999999953
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0043 Score=67.11 Aligned_cols=107 Identities=13% Similarity=0.074 Sum_probs=66.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
..+||||||| +|+.+|..|.+.+++|+|||+.+..-.. + .+.. +-.+.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~------~----~l~~----------------~~~g~----- 58 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFT------P----LLPQ----------------TTTGT----- 58 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchh------h----hHHH----------------hcccC-----
Confidence 5789999988 5777777887778999999987642110 0 0000 00000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE--------cCCcEEEcCEEEEccCCC
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--------AEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--------~dG~~i~ArlVI~ADG~~ 260 (549)
++.+.+..-+.+.+...+++++ ..+|++|+.++..+++.. ++|.++.+|.||-|.|..
T Consensus 59 -------------~~~~~~~~~~~~~~~~~~~~~i-~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~ 124 (424)
T PTZ00318 59 -------------LEFRSICEPVRPALAKLPNRYL-RAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGAR 124 (424)
T ss_pred -------------CChHHhHHHHHHHhccCCeEEE-EEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcc
Confidence 0011111123333444566654 468999988777776632 346689999999999987
Q ss_pred h
Q 008915 261 S 261 (549)
Q Consensus 261 S 261 (549)
.
T Consensus 125 ~ 125 (424)
T PTZ00318 125 P 125 (424)
T ss_pred c
Confidence 4
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0087 Score=65.42 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=70.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||||| .|+-+|..|++.|.+|.|+|+.+.+- .. +
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~~-----------------~--- 205 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL---------------------PR-----------------E--- 205 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC---------------------Cc-----------------c---
Confidence 368999976 59999999999999999999764210 00 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---CcEEEcCEEEEccCCChHH
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d---G~~i~ArlVI~ADG~~S~v 263 (549)
++ .+...+.+.+.+.|++++.+++++++..+++.+.+++.+ ++++.++.||.|.|.....
T Consensus 206 -------------d~-~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 206 -------------EP-EISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred -------------CH-HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 00 112334455667799999999999998776666666532 3589999999999987654
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.006 Score=71.16 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=75.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| +|+-+|..|++.|.+|.|+|+.+.. + . ..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l---------------l------~---------~~------------ 179 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL---------------M------A---------KQ------------ 179 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch---------------h------h---------hh------------
Confidence 58999987 5999999999999999999975420 0 0 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh--HHHHHhc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR 268 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S--~vrrql~ 268 (549)
++ ..+.+.+.+.+++.|++++.++.++++..++....|.++||+++.+|+||-|.|... .+++..+
T Consensus 180 -----------ld-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~g 247 (785)
T TIGR02374 180 -----------LD-QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAG 247 (785)
T ss_pred -----------cC-HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcC
Confidence 00 012344555667789999999999998765545567788899999999999999763 3555554
Q ss_pred C
Q 008915 269 S 269 (549)
Q Consensus 269 ~ 269 (549)
+
T Consensus 248 l 248 (785)
T TIGR02374 248 I 248 (785)
T ss_pred C
Confidence 3
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0092 Score=65.20 Aligned_cols=96 Identities=22% Similarity=0.380 Sum_probs=70.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- . .
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll---------------------~---------------------~- 208 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL---------------------P---------------------G- 208 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------c---------------------c-
Confidence 59999976 59999999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+++.|++++.++++++++.++..+.+.. +| .++.+++||.|.|....+
T Consensus 209 -----------~d-~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 209 -----------ED-EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -----------cc-HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCCccCC
Confidence 00 11233455666778999999999999977666555554 34 379999999999987664
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.01 Score=64.82 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=70.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... . .
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------------------~---------------------~- 209 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL---------------------P---------------------R- 209 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC---------------------c---------------------c-
Confidence 58999976 59999999999999999999865210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc--C-CcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--E-GKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--d-G~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+.+.|++++.+++++++..+++++.|.+. + +.++.+|.||-|.|.....
T Consensus 210 -----------~~-~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 210 -----------ED-EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 00 012234455666789999999999999877766655542 3 4579999999999977543
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00063 Score=75.08 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChHHHHH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~vrrq 266 (549)
.+-+.|.+.+++.|++++.+++|+++..++++ +.|.+++|++++|+.||.|.+....+.+.
T Consensus 220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l 281 (502)
T TIGR02734 220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRL 281 (502)
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHh
Confidence 46678888888889999999999999887765 45777788889999999988876655443
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=64.77 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=71.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|||+.+..- . .
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il---------------------~---------------------~- 212 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC---------------------P---------------------G- 212 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC---------------------C---------------------C-
Confidence 48999976 59999999999999999999754210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc---C--CcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---E--GKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---d--G~~i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+.+.|++++.+++++++..+++++.+.+. + ++++.++.||.|.|.....
T Consensus 213 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 213 -----------TD-TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred -----------CC-HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 00 012344556667789999999999999877677766553 2 3479999999999987543
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0078 Score=65.69 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=70.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+..- ..
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll---------------------~~---------------------- 204 (451)
T PRK07846 168 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL---------------------RH---------------------- 204 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------------------cc----------------------
Confidence 59999976 59999999999999999999764210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+++ .+.+.+.+ +.+.+++++.+++++++..+++++.|.+.+|+++.++.||.|.|.....
T Consensus 205 -----------~d~-~~~~~l~~-l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 205 -----------LDD-DISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred -----------cCH-HHHHHHHH-HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 000 01122222 2245789999999999987777788888788899999999999987654
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0028 Score=66.01 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=28.9
Q ss_pred CcccEEEEcchHHH-HHHHHHHhCCCcEEEEccCCC
Q 008915 109 GTFDVIVCGGTLGI-FIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg~G~-~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.+|||+|+|||+|+ .+|+..|+.|++.+.||++..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence 37999999988755 566688999999999998543
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.011 Score=64.27 Aligned_cols=96 Identities=18% Similarity=0.321 Sum_probs=74.3
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~~ 191 (549)
++||||| .|+=.|..+++.|.+|+|||+.+..- +.
T Consensus 176 lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL---------------------p~----------------------- 211 (454)
T COG1249 176 LVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL---------------------PG----------------------- 211 (454)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC---------------------Cc-----------------------
Confidence 9999977 59999999999999999999875311 00
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc--EEEcCEEEEccCCChHH
Q 008915 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
.| ..+-+.+.+.+++.|.+++.+++++.+...++++.+.+++|. +++|+.|+-|.|+.-.+
T Consensus 212 ----------~D-~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 212 ----------ED-PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred ----------CC-HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 01 123344556666667899999999999988887888887765 79999999999977543
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.001 Score=70.67 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=30.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
|||+||||| +|+++|..|++.|.+|+|||+....+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 799999977 59999999999999999999976543
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.013 Score=64.46 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=71.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... . .
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~- 221 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL---------------------A---------------------A- 221 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC---------------------C---------------------c-
Confidence 68999976 58889999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC--C--cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d--G--~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+++.+.|++++.+++++++..+++++.+.+.+ | .++.++.||-|.|.....
T Consensus 222 -----------~d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 222 -----------AD-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred -----------CC-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 01 1223344556667899999999999998877777777654 3 479999999999987654
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.013 Score=64.93 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=72.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+++..... -+
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-------------------~~------------------------ 220 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR-------------------GF------------------------ 220 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc-------------------cC------------------------
Confidence 68999976 59999999999999999998532100 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vr 264 (549)
| ..+.+.+.+.+++.|++++.++.++.+...++.+.|.+.+|+++.++.||-|.|......
T Consensus 221 ------------d-~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 221 ------------D-RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred ------------C-HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 0 012234455666789999999999998876666777777888899999999999876543
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.013 Score=64.27 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=69.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... +.
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il---------------------~~---------------------- 218 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL---------------------PT---------------------- 218 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC---------------------Cc----------------------
Confidence 69999976 59999999999999999999865210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-ECCEEEE-EEcCCc--EEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V-~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+++.|++++.+++++++.. .++++.+ .+.+|+ ++.++.||.|.|.....
T Consensus 219 -----------~~-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 219 -----------ED-AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred -----------CC-HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 00 11223445566678999999999999975 2444443 344553 79999999999987544
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0012 Score=72.59 Aligned_cols=38 Identities=34% Similarity=0.456 Sum_probs=32.7
Q ss_pred CCcccEEEEcchH-HHHHHHHHHhC-CCcEEEEccCCCCC
Q 008915 108 VGTFDVIVCGGTL-GIFIATALSFK-GLRVAIVERNTLKG 145 (549)
Q Consensus 108 ~~~yDVIIVGGg~-G~~~Aa~LAr~-GlrVlLIEr~~~~~ 145 (549)
..++||+|||||+ |+++|..|+++ |++|+|+|+....+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 4478999999875 99999999999 99999999987543
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.01 Score=69.73 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=74.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.++||||| +|+-+|..|++.|.+|.|+|+.+.. + . ..
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l---------------l------~---------~~------------ 184 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML---------------M------A---------EQ------------ 184 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc---------------h------h---------hh------------
Confidence 48999977 5999999999999999999975420 0 0 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC--EEEEEEcCCcEEEcCEEEEccCCChH--HHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP--VVKQ 266 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d--gv~V~~~dG~~i~ArlVI~ADG~~S~--vrrq 266 (549)
+| ....+.+.+++.+.|++++.++.++++..+++ ...|.+++|+++.+++||-|.|.... +++.
T Consensus 185 -----------ld-~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~ 252 (847)
T PRK14989 185 -----------LD-QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQ 252 (847)
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhh
Confidence 00 11224456667778999999999999975432 34567778999999999999997654 4555
Q ss_pred hcC
Q 008915 267 IRS 269 (549)
Q Consensus 267 l~~ 269 (549)
.++
T Consensus 253 ~Gl 255 (847)
T PRK14989 253 CGL 255 (847)
T ss_pred cCc
Confidence 543
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.002 Score=74.81 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=30.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
..||+||||| +|+++|..|+++|++|+|+|+...+
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 5799999965 6999999999999999999986543
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.013 Score=63.32 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=71.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+..- . .
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~---------------------~----------------------~ 175 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL---------------------N----------------------K 175 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC---------------------c----------------------c
Confidence 69999976 59889999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh--HHHHHhc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR 268 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S--~vrrql~ 268 (549)
. .+ ..+.+.+.+.+.+.|++++.+++++++..++ .+ +.+.+|+++.++.||-|.|... .+.+.++
T Consensus 176 ~----------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g 242 (427)
T TIGR03385 176 L----------FD-EEMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGIKPNSELAKDSG 242 (427)
T ss_pred c----------cC-HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCccCCHHHHHhcC
Confidence 0 00 1123345556667899999999999986543 33 4556788999999999999864 3444444
Q ss_pred C
Q 008915 269 S 269 (549)
Q Consensus 269 ~ 269 (549)
.
T Consensus 243 l 243 (427)
T TIGR03385 243 L 243 (427)
T ss_pred c
Confidence 3
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.018 Score=62.51 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=70.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+..- + .
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~- 196 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLFL---------------------P---------------------R- 196 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC---------------------C---------------------C-
Confidence 58999976 58889999999999999998753100 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+++.|++++.+++++++..+++.+.+..+++ ++.++.||-|.|.....
T Consensus 197 -----------~~-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 197 -----------ED-RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 00 11223455667778999999999999987777777766444 58999999999987654
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.027 Score=61.03 Aligned_cols=103 Identities=13% Similarity=0.189 Sum_probs=70.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++++.+.. +. .
T Consensus 151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~---------------------l~----------------------~ 187 (444)
T PRK09564 151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI---------------------LP----------------------D 187 (444)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc---------------------Cc----------------------h
Confidence 59999976 5888999999999999999865310 00 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh--HHHHHhc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR 268 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S--~vrrql~ 268 (549)
. ++ ..+.+.+.+.+++.|++++.+++++++..++....+.+ ++.++.++.||.|.|... .+.+..+
T Consensus 188 ~----------~~-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l~~~g 255 (444)
T PRK09564 188 S----------FD-KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPNTEFLEDTG 255 (444)
T ss_pred h----------cC-HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcCHHHHHhcC
Confidence 0 00 12334566677788999999999999965433333444 455799999999999864 3444444
Q ss_pred C
Q 008915 269 S 269 (549)
Q Consensus 269 ~ 269 (549)
+
T Consensus 256 l 256 (444)
T PRK09564 256 L 256 (444)
T ss_pred c
Confidence 3
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0016 Score=66.50 Aligned_cols=36 Identities=39% Similarity=0.574 Sum_probs=32.5
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.||.+|||+|+ |+.+|-.|+++|.+|++|||.+..+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 38999999875 9999999999999999999998765
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0091 Score=70.49 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=30.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
..+|+||||| +|+++|..|+++|++|+|+|+.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 4689999965 6999999999999999999987654
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.022 Score=62.36 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=69.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+++..... .
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~----------------------~---------------------- 215 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSRVLS----------------------Q---------------------- 215 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC----------------------C----------------------
Confidence 48999976 58889999999999999998532100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+.+.|++++.+++++++..+++.+.+.+++ .++.++.||-|.|.....
T Consensus 216 -----------~~-~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 216 -----------ED-PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred -----------CC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence 00 0123345566677899999999999998766666666544 479999999999987654
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.011 Score=64.17 Aligned_cols=109 Identities=14% Similarity=0.058 Sum_probs=65.5
Q ss_pred cEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.||||||| +|+.+|..|++. +.+|+|||+.+.....++ ++. .... +.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~--------------~lp------~~~~-----~~~---- 53 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC--------------ALP------YYIG-----EVV---- 53 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccC--------------Ccc------hhhc-----Ccc----
Confidence 59999987 577788888876 789999999865332111 000 0000 000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC-Cc--EEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d-G~--~i~ArlVI~ADG~~S 261 (549)
... ... ..+.+. .+ ....|++++.+++|++++.++..+.+...+ ++ ++++|.||-|+|...
T Consensus 54 ~~~---~~~--~~~~~~----~~---~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 54 EDR---KYA--LAYTPE----KF---YDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred CCH---HHc--ccCCHH----HH---HHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence 000 000 001111 11 123588999999999998877776666432 23 478999999999875
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.02 Score=62.90 Aligned_cols=96 Identities=24% Similarity=0.231 Sum_probs=71.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+++..... .
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----------------------~---------------------- 225 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----------------------R---------------------- 225 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----------------------c----------------------
Confidence 59999976 59999999999999999998632100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vr 264 (549)
.+ ..+.+.+.+.+.+.|++++.+++++.+..+++++.+..+++ ++.++.||-|.|......
T Consensus 226 -----------~d-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 226 -----------ED-PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred -----------ch-HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 00 01233455666778999999999999987777777776554 699999999999987653
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0018 Score=70.96 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE--EEEc--CCc--EEEcCEEEEccCCCh
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLA--EGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~~~--dG~--~i~ArlVI~ADG~~S 261 (549)
.|.+.|.+.+.+.|++|+.+++|++|..++++++ +... +|+ +++||.||-|.-...
T Consensus 219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~ 280 (479)
T PRK07208 219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRE 280 (479)
T ss_pred hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHH
Confidence 3556777888888999999999999999877643 2222 343 699999998776543
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.021 Score=62.92 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 208 IEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
.+.+.+.+++.|++++.++.++++..++++ ..|.+.+|+++.++.||-|.|.....
T Consensus 234 ~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 234 RKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 345556677789999999999999876554 56677677889999999999987654
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.002 Score=65.87 Aligned_cols=34 Identities=44% Similarity=0.635 Sum_probs=30.9
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
+|||+|+|||+ |+++|++|+++|.++.+|-++..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 69999999985 99999999999999999988753
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.022 Score=62.77 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=69.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+++....+ .
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----------------------~---------------------- 217 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR----------------------G---------------------- 217 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc----------------------c----------------------
Confidence 58999976 59999999999999999998631100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC---cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG---~~i~ArlVI~ADG~~S~v 263 (549)
+| ..+.+.+.+.+++.|++++.++.++.+...++.+.|++.++ +++.++.||-|.|.....
T Consensus 218 -----------~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 218 -----------FD-QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred -----------cC-HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 00 01223445566678999999999999887666777776554 379999999999976544
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.015 Score=61.45 Aligned_cols=97 Identities=22% Similarity=0.309 Sum_probs=72.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-+|+|+||| +|+.+|..|+++|++|+++|+.+.+... .
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~--------------------------~--------------- 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ--------------------------L--------------- 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh--------------------------h---------------
Confidence 589999965 6999999999999999999987642210 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE---EEEcCCcEEEcCEEEEccCCCh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~---V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. . ..+-+.+.+.+.+.|++++.++++.+++...+... +...++..+.+++++-+.|..-
T Consensus 176 ---~-----~-----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 176 ---L-----D-----PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred ---h-----h-----HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 0 0 12334555666778899999999999988766543 4555788899999999999765
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0019 Score=71.73 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=31.2
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
|||||||+ +.|+++|..|+++|++|++||++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 79999996 569999999999999999999987654
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.012 Score=62.67 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=54.6
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC-cEEEcCEEEEccCCCh-----------HHHHHhcC
Q 008915 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFS-----------PVVKQIRS 269 (549)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG-~~i~ArlVI~ADG~~S-----------~vrrql~~ 269 (549)
-....+.+.|..++++.|++++.+++|+++ +++++.|.+.++ .+++|+-||-|+|..| .+++++|.
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh 160 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGV 160 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCC
Confidence 345678889999999999999999999998 444567776433 4799999999999876 67888876
Q ss_pred CC
Q 008915 270 GR 271 (549)
Q Consensus 270 ~~ 271 (549)
..
T Consensus 161 ~i 162 (376)
T TIGR03862 161 SV 162 (376)
T ss_pred cc
Confidence 53
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0031 Score=75.21 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.0
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+|||| ++|+++|..|+++|++|+|+|+...++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 479999996 569999999999999999999876443
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.008 Score=70.16 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=36.0
Q ss_pred HhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 216 ISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 216 ~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.+.|++++.+++|+.++.+. ..|.+.+|+++.+|.||-|+|...
T Consensus 65 ~~~gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 65 EKHGITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHCCCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCc
Confidence 45689999999999987654 356667888999999999999764
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.024 Score=63.56 Aligned_cols=95 Identities=23% Similarity=0.264 Sum_probs=69.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.||++..... . +
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~----------------------~-----------------~---- 308 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARSTLFF----------------------R-----------------E---- 308 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc----------------------c-----------------c----
Confidence 58999976 59999999999999999998642100 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
| ..+.+.+.+.+++.|++++.+++++++..+++.+.+.++++ ++.++.||-|.|.....
T Consensus 309 ------------d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 309 ------------D-PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred ------------C-HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 0 01223345556678999999999999987777777766544 69999999999987554
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.032 Score=60.94 Aligned_cols=96 Identities=20% Similarity=0.266 Sum_probs=68.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.+||+.+..- ..
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll---------------------~~---------------------- 207 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL---------------------RH---------------------- 207 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc---------------------cc----------------------
Confidence 58999976 58889999999999999999754210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+++ .+.+.+.+ +.+.+++++.+++++++..+++++.+++.+|+++.++.||.|.|.....
T Consensus 208 -----------~d~-~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 208 -----------LDE-DISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred -----------cCH-HHHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 000 00111222 2235789999999999987777788887778889999999999977543
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.019 Score=60.88 Aligned_cols=105 Identities=10% Similarity=0.132 Sum_probs=64.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.|||||||| +|+.+|..|.+. ..+|+||++.+.....+. .++ ..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~-~l~-------------------~~~~----------- 51 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKP-DLS-------------------HVFS----------- 51 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcC-cCc-------------------HHHh-----------
Confidence 489999976 577777788764 578999998764322111 010 0000
Q ss_pred CCccccccccccceeCHHHHHH-HHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~-~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. ..++..+.. ...+.+.+.|++++.+++|++++.+.. +|.+ ++.++.+|.||-|+|...
T Consensus 52 -~-----------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 52 -Q-----------GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred -C-----------CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCC
Confidence 0 000111111 112233456899999999999876544 4444 567899999999999864
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0025 Score=68.88 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEE-EcCCc--EEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL-LAEGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~-~~dG~--~i~ArlVI~ADG~~ 260 (549)
++.+.|.+++++.|++++.+++|+++..+++++.+. ..+|+ +++||.||-|.|..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 456778888888899999999999998877766543 33443 69999999999964
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.027 Score=61.80 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=69.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|||+.+..- ..
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il---------------------~~---------------------- 212 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI---------------------PA---------------------- 212 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC---------------------Cc----------------------
Confidence 58999976 59999999999999999999765210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC--C--cEEEcCEEEEccCCChHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d--G--~~i~ArlVI~ADG~~S~vr 264 (549)
.| ..+.+.+.+.+.+. ++++.+++++.+..+++++.+++.+ + +++.++.||-|.|......
T Consensus 213 -----------~d-~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 213 -----------AD-KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred -----------CC-HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 00 01223344445555 7899999999998777777776643 2 3699999999999887653
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0027 Score=69.10 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=36.0
Q ss_pred CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 220 ~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
++|+.+++|+.|..++++++|++++|++++||.||-|.-..
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 57999999999999888999988888889999999987743
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.052 Score=58.11 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
...+-+.+.+.+.|+++++.|+|.++...++. ..|.+++|.++.||.||-|-|+.+.
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 45577888999999999999999999998875 3466678989999999999998864
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.026 Score=61.36 Aligned_cols=98 Identities=14% Similarity=0.246 Sum_probs=70.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+... + .+
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--------~----------~~------------------------ 187 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--------K----------LM------------------------ 187 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--------h----------hc------------------------
Confidence 59999976 59999999999999999999764210 0 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH--HHHHhc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQIR 268 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~--vrrql~ 268 (549)
+ ..+.+.+.+.+.+.|++++.+++++++.. + .|.+++|+++.+|.||-|.|.... ..+..+
T Consensus 188 ------------d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~g 250 (438)
T PRK13512 188 ------------D-ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSN 250 (438)
T ss_pred ------------C-HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcChHHHHhcC
Confidence 0 01223455566778999999999999852 2 455667888999999999997643 344443
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0038 Score=67.06 Aligned_cols=62 Identities=29% Similarity=0.358 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCC--cEEEcCEEEEccCCC-hH-HHHHh
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG--KILSSHLIIDAMGNF-SP-VVKQI 267 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG--~~i~ArlVI~ADG~~-S~-vrrql 267 (549)
+|.+.|.+++++.|++++.+++|+++..++++++ |.++++ .+++||-+|-|+|.+ |. +.+++
T Consensus 264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 4566677777777888888888888777766655 343444 368888888888888 65 44443
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0095 Score=62.78 Aligned_cols=137 Identities=17% Similarity=0.271 Sum_probs=84.3
Q ss_pred cccEEEEc-chHHHHHHHHHHhC-CCcEEEEccCCCCCCCccccCCHHHHH--HHHHcCCCCcccchhhhhhccCC-Ccc
Q 008915 110 TFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELL--ELVESGILVEDDIDEATATKFNP-NRC 184 (549)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LAr~-GlrVlLIEr~~~~~~~r~~~IS~~~l~--~L~~lGl~~~~eie~~i~~~~~~-~~i 184 (549)
.+|+|.|| ||.-+++|+.|..+ +++++.+||.+..+-+.+.-|...+++ .|.+| .+ -.+| ...
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDL--VT----------l~~PTs~y 72 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDL--VT----------LVDPTSPY 72 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhh--cc----------ccCCCCch
Confidence 69999999 88888889989876 589999999987654433333333332 22221 11 0111 111
Q ss_pred cccC----Cccccccccc---cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CC-EEE--EEEcCCcEEEcCEE
Q 008915 185 GFEG----KGEIWVEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-EN-AAV--LLLAEGKILSSHLI 253 (549)
Q Consensus 185 ~f~~----~~~l~~~~~l---~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~d-gv~--V~~~dG~~i~ArlV 253 (549)
+|-+ ...++ ..+ +..+.|..+.+.|.-++... -.++.+++|++|..- .| .+. +.+.++.+++||=|
T Consensus 73 SFLNYL~~h~RLy--~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~l 149 (436)
T COG3486 73 SFLNYLHEHGRLY--EFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNL 149 (436)
T ss_pred HHHHHHHHcchHh--hhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeE
Confidence 1110 11111 111 23477888888888777665 588999999977432 22 233 44456779999999
Q ss_pred EEccCCCh
Q 008915 254 IDAMGNFS 261 (549)
Q Consensus 254 I~ADG~~S 261 (549)
|...|..-
T Consensus 150 Vlg~G~~P 157 (436)
T COG3486 150 VLGVGTQP 157 (436)
T ss_pred EEccCCCc
Confidence 99999764
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0043 Score=68.41 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=31.3
Q ss_pred CcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCC
Q 008915 109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 109 ~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
...+|||||||+ |+++|..|...|++|+|+|.....
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 368999999775 999999999999999999976654
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0034 Score=70.13 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=31.2
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
..+||+||||+| .|+++|..|+..|++|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 347999999965 69999999999999999999984
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.022 Score=66.95 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=65.8
Q ss_pred cEEEEcch-HHHHHHHHHHhC----CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 112 DVIVCGGT-LGIFIATALSFK----GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~----GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.||||||| +|..+|..|.++ +++|+||++.+.+...+. .++. ... .. .
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~-~L~~-------------------~~~-----~~-~- 57 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV-HLSS-------------------YFS-----HH-T- 57 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC-cchH-------------------hHc-----CC-C-
Confidence 69999976 577788788643 689999999876543221 1110 000 00 0
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
...+.. ...+.+.+.|++++.+++|++++.+. .+|.+++|+++++|.||-|+|...
T Consensus 58 --~~~l~~---------------~~~~~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 58 --AEELSL---------------VREGFYEKHGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred --HHHccC---------------CCHHHHHhCCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCc
Confidence 000000 01122334689999999999886643 456667788999999999999764
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0033 Score=70.07 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=28.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCC-CcEEEEccCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G-lrVlLIEr~~~ 143 (549)
|+|||||| +|+.+|..|++.| ++|+|||+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 89999976 5999999999998 79999999863
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0042 Score=69.95 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=30.4
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
...||+|||||| +|+.+|..|++ +.+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446999999976 69999999999 699999999974
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.059 Score=60.48 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=67.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+..- .
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il---------------------~----------------------- 274 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL---------------------R----------------------- 274 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc---------------------c-----------------------
Confidence 48888876 48888888888899999998754100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCC-cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG-KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG-~~i~ArlVI~ADG~~S~v 263 (549)
.+| ..+.+.+.+.+++.|++++.++.+.++..+++ ++.+...++ +++.++.||-|.|....+
T Consensus 275 ----------~~d-~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 275 ----------KFD-ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred ----------cCC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence 001 11223445566778999999999999986544 465555444 479999999999977543
|
|
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0049 Score=68.42 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=33.0
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhC-CCcEEEEccCCCC
Q 008915 107 AVGTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLK 144 (549)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LAr~-GlrVlLIEr~~~~ 144 (549)
....||.|||||| +|+.+|+.|++. -++|+|||++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4457999999976 799999999986 7999999999765
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0049 Score=66.63 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=36.1
Q ss_pred cCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEcc
Q 008915 218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 218 ~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~AD 257 (549)
.+.+++.+++|++|..++++++|++.+|++++||.||.|.
T Consensus 209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~ 248 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAV 248 (435)
T ss_pred ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEec
Confidence 3568999999999999999999998888889999999996
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.041 Score=59.55 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.+.+.+.+++.|++++.+++++++.. +. |.+++|+++.++++|-|.|..
T Consensus 231 ~~~~~~~L~~~gV~v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 231 RKYGQRRLRRLGVDIRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHHHHCCCEEEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccCCC
Confidence 34456667778999999999998853 43 456788899999999999954
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.062 Score=58.07 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=34.7
Q ss_pred EEEeCceEEEEEEE--CCEEEEEEcCCcEEEcCEEEEccCCChHHHHH
Q 008915 221 VIFEGYSVSSICTY--ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 221 ~v~~~t~v~~i~~~--~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrq 266 (549)
.....++++++... ..+..+...+|....|+.+|-|+|+.-+....
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP 169 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence 34556777777776 55677777889999999999999987665543
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0064 Score=66.18 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCE-E-EEEEcCCc-----EEEcCEEEEccCCCh
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-A-VLLLAEGK-----ILSSHLIIDAMGNFS 261 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v-~V~~~dG~-----~i~ArlVI~ADG~~S 261 (549)
+-+.|.+.+.+.|++|+.+++|++|..++++ + .|.+.+|+ ++.||-||-|...+.
T Consensus 215 l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 215 LCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred HHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 3455666666779999999999999876555 3 25555554 799999999987643
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0063 Score=62.36 Aligned_cols=34 Identities=41% Similarity=0.550 Sum_probs=30.6
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
++||||||+|+ |+.+|+.||.+|.+|+++|....
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 69999999875 88999999999999999997754
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0075 Score=66.49 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=37.5
Q ss_pred CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 220 ~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
..|+.+++|++|..++++|+|++++|++++||.||.|....
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~ 285 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLG 285 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChH
Confidence 57999999999999999999999999899999999999744
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.089 Score=57.36 Aligned_cols=96 Identities=21% Similarity=0.213 Sum_probs=67.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+... +.
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~~---------------------- 207 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL---------------------PL---------------------- 207 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC---------------------cc----------------------
Confidence 58999976 59999999999999999999864210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCC--cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG--KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG--~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+++. ++++.+++++++..+++ .++++..++ .++.++.||.|.|.....
T Consensus 208 -----------~d-~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 208 -----------ED-PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred -----------hh-HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 00 11223444556666 89999999999976554 455544333 479999999999976543
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.027 Score=56.86 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=43.0
Q ss_pred ceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEE-EEEc---C-CcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV-LLLA---E-GKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~-V~~~---d-G~~i~ArlVI~ADG~~S~ 262 (549)
..|+|..|-+.+.+.+.+.| ++++.+ .|.++..+..++. +..+ + .....++.+|.++|-+++
T Consensus 142 aqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 142 AQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred ceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 35899999999999998876 577766 5677753332221 1111 1 346788899999999986
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0085 Score=70.93 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+||+||||| +|+++|..|+++|++|+|+|+.+.++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence 5899999965 69999999999999999999886543
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0079 Score=64.48 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=31.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
=+++||||| +|+++|+.||..|++|.|+||.+..+
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 469999987 59999999999999999999998765
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.019 Score=58.88 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=59.4
Q ss_pred cEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCCCC--cccc----CCHHHH---HHHHHcCCCCcccc---hhhhhhc
Q 008915 112 DVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGRE--QEWN----ISRKEL---LELVESGILVEDDI---DEATATK 178 (549)
Q Consensus 112 DVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~~~--r~~~----IS~~~l---~~L~~lGl~~~~ei---e~~i~~~ 178 (549)
-|.|||||+ |+-+|+.+|++|++|.|.|-.+..... ..-+ ++.+++ ..-...|++.+ |+ .++|...
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~-EMR~lgSlii~~ 83 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKA-EMRLLGSLIIEA 83 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHH-HHHHhhhHHhhh
Confidence 488999985 888999999999999999976543211 1000 111111 11112233321 11 1111111
Q ss_pred cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEE
Q 008915 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSI 231 (549)
Q Consensus 179 ~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i 231 (549)
...-.+|..-.++|||+.|-+.+-+++.++.. +|+ ..+|+.+
T Consensus 84 ----------Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vi-reEvt~i 126 (439)
T COG1206 84 ----------ADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVI-REEVTEI 126 (439)
T ss_pred ----------hhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEE-ccccccC
Confidence 00111233334689999999999999988765 443 3345544
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0082 Score=65.15 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
-|+|+||| +|+++|..||.+|++|+|+|+++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence 38999987 59999999999999999999998865
|
|
| >PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0096 Score=64.40 Aligned_cols=37 Identities=35% Similarity=0.512 Sum_probs=28.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+|||||+|-| .-+.+|++|++.|.+|+.+||+.+-+
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG 40 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence 47999999965 58999999999999999999998744
|
This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A .... |
| >TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.3 Score=49.25 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=56.3
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CC--cEEEcCEEEEccCCChH-HHHHhcC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIRS 269 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG--~~i~ArlVI~ADG~~S~-vrrql~~ 269 (549)
..+|+..+...+.+.+.+.|++++.+++|+++..+++.+. |++. +| .+++|+.||-|.|.+|. +.+.++.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL 199 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence 3589999999999999999999999999999998777643 4442 34 27999999999999987 5544443
|
Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.11 Score=58.30 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=66.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+=+|..|++.|.+|.|+|+.+... .
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il---------------------~----------------------- 289 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL---------------------R----------------------- 289 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc---------------------c-----------------------
Confidence 58888876 47778888888888888888653100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEEcCEEEEccCCChHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~ArlVI~ADG~~S~vr 264 (549)
.++ ..+.+.+.+.+.+.|++++.+++++++..+++ .+.+.+.+++...++.||-|.|......
T Consensus 290 ----------~~d-~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 290 ----------GFD-EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred ----------ccC-HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 001 12234455666778999999999999976544 3555554454455899999999887653
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.013 Score=65.32 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
|.+.|.+.+. +..|+.+++|+.|..++++++|++++|++++||.||.+.=
T Consensus 244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 4445544442 3479999999999999999999998898999999998764
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.028 Score=61.34 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=30.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
.+||+||||| +|+++|..|+++|++|+|+|+.+.+
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 5899999965 6999999999999999999997654
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.012 Score=64.54 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEEC--CE---E-EEEEcCC---cEEEcCEEEEccCCCh
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---A-VLLLAEG---KILSSHLIIDAMGNFS 261 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dg---v-~V~~~dG---~~i~ArlVI~ADG~~S 261 (549)
+.+.|.+.+++.|++|+.+++|++|..++ ++ + .|.+++| +++.||.||-|.....
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHH
Confidence 44557778888899999999999998764 22 2 2334433 5699999999999763
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.14 Score=57.67 Aligned_cols=59 Identities=14% Similarity=0.265 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEE-----EEcCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-----LLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V-----~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+...|.+++.+.|+++++++.++++..++++.++ ...+|+ .++|+-||-|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 457788888888889999999999999876443222 223454 68999999999988753
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.12 Score=53.54 Aligned_cols=134 Identities=21% Similarity=0.277 Sum_probs=71.4
Q ss_pred CCCcccEEEEcchHHHH-HHHHHHhCCCcEEEEccC-CCCCCC---------ccccCCHHH--HHHHHHcCCCCcccchh
Q 008915 107 AVGTFDVIVCGGTLGIF-IATALSFKGLRVAIVERN-TLKGRE---------QEWNISRKE--LLELVESGILVEDDIDE 173 (549)
Q Consensus 107 ~~~~yDVIIVGGg~G~~-~Aa~LAr~GlrVlLIEr~-~~~~~~---------r~~~IS~~~--l~~L~~lGl~~~~eie~ 173 (549)
...+||..|||||.|+. +|...|..|.+|.|+|-. ...+.+ --|+.+..+ ++.-.+-|+-..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~----- 91 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN----- 91 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc-----
Confidence 34479999999998554 555777889999999976 333321 235544221 111111111000
Q ss_pred hhhhccCCCcccccCCccccc-cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc--EEEc
Q 008915 174 ATATKFNPNRCGFEGKGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSS 250 (549)
Q Consensus 174 ~i~~~~~~~~i~f~~~~~l~~-~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~--~i~A 250 (549)
....|+ -..+-. .+ .+ | .+|.......+..++++++++.. -..++..+.|...||+ .++|
T Consensus 92 --------~~~~fd-W~~ik~krd--ay-i--~RLngIY~~~L~k~~V~~i~G~a---~f~~~~~v~V~~~d~~~~~Yta 154 (478)
T KOG0405|consen 92 --------EEGSFD-WKVIKQKRD--AY-I--LRLNGIYKRNLAKAAVKLIEGRA---RFVSPGEVEVEVNDGTKIVYTA 154 (478)
T ss_pred --------cccCCc-HHHHHhhhh--HH-H--HHHHHHHHhhccccceeEEeeeE---EEcCCCceEEEecCCeeEEEec
Confidence 000110 000000 00 00 0 12334444445556777777642 1234567888887875 4899
Q ss_pred CEEEEccCCChH
Q 008915 251 HLIIDAMGNFSP 262 (549)
Q Consensus 251 rlVI~ADG~~S~ 262 (549)
+.+..|.|..-.
T Consensus 155 k~iLIAtGg~p~ 166 (478)
T KOG0405|consen 155 KHILIATGGRPI 166 (478)
T ss_pred ceEEEEeCCccC
Confidence 999999997643
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.16 Score=57.97 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=65.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|||+.+..- ..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll---------------------~~---------------------- 350 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL---------------------PL---------------------- 350 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc---------------------cc----------------------
Confidence 58999976 58888889999999999999764210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHH-HhcCCEEEeCceEEEEEEECCE--EEEEEcC-------C--------cEEEcCE
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENA--AVLLLAE-------G--------KILSSHL 252 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a-~~~G~~v~~~t~v~~i~~~~dg--v~V~~~d-------G--------~~i~Arl 252 (549)
+|+ .+.+.+.+.+ .+.|++++.++.|+++..++++ +.|.+.+ + +++.++.
T Consensus 351 -----------~d~-eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~ 418 (659)
T PTZ00153 351 -----------LDA-DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDS 418 (659)
T ss_pred -----------CCH-HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCE
Confidence 011 1122223332 3578999999999999866543 5555421 1 2799999
Q ss_pred EEEccCCChHH
Q 008915 253 IIDAMGNFSPV 263 (549)
Q Consensus 253 VI~ADG~~S~v 263 (549)
||-|.|..-.+
T Consensus 419 VlvAtGr~Pnt 429 (659)
T PTZ00153 419 CLVATGRKPNT 429 (659)
T ss_pred EEEEECcccCC
Confidence 99999987543
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.024 Score=64.84 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=31.1
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+|||| ++|+++|..|++.|++|+|+|+.+.++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 479999996 569999999999999999999986543
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.019 Score=66.52 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=31.5
Q ss_pred CcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCC
Q 008915 109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 109 ~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
...||+|||||+ |+++|..|++.|++|+|+|+...+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 368999999775 888999999999999999998654
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.022 Score=62.50 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=31.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+||+||||| +|+++|..|+++|++|+|+|+.+.++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 5799999965 69999999999999999999987553
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.021 Score=62.30 Aligned_cols=35 Identities=31% Similarity=0.325 Sum_probs=30.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
..+|+||||| +|+++|..|+++|++|+|+|+.+..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 4789999976 6899999999999999999998654
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.066 Score=57.32 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc-EEEcCEEEEccCCC-hHHHHHh
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNF-SPVVKQI 267 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~-~i~ArlVI~ADG~~-S~vrrql 267 (549)
.+.+...+.+.+.|++++.++.|++++ +++++ +++|. +|.|+.+|=|.|.. |++.+.+
T Consensus 210 ~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~v~--~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 210 KLSKYAERALEKLGVEVLLGTPVTEVT--PDGVT--LKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHHHHHHHHHHCCCEEEcCCceEEEC--CCcEE--EccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 455566677788899999999999985 45554 44565 59999999999965 5566654
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.021 Score=65.76 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEcc
Q 008915 219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 219 G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~AD 257 (549)
+..|+.+++|+.|..++++|+|+. ++++++||.||.+-
T Consensus 366 ~L~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTV 403 (738)
T PLN02529 366 GVPIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTV 403 (738)
T ss_pred cCCEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECC
Confidence 457999999999999999999876 55689999999765
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.16 Score=52.56 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=63.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+.... .
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------~- 184 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------E- 184 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC------------------------------------------C-
Confidence 68999987 588899999999999999997542100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcC----C--cEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAE----G--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~d----G--~~i~ArlVI~ADG~~S 261 (549)
..+.+.+.+++++.|++++.++.++++..+++++ .|++.+ + +++.++.||-|.|...
T Consensus 185 --------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 185 --------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred --------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 0011333455566788999999999987654332 233332 1 3799999999988653
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.037 Score=60.69 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=31.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+||||| +|+++|..|+++|++|+++|+.+.++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g 177 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG 177 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 4799999965 69999999999999999999987543
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.025 Score=58.25 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=29.1
Q ss_pred CCcccEEEEcchH-HHHHHHHHHhCCCcEEEEccC
Q 008915 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 108 ~~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
+.+||.||+|||. |+++|-..|..|.+|+++|--
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 4489999999886 777888999999999999943
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.033 Score=61.32 Aligned_cols=36 Identities=33% Similarity=0.426 Sum_probs=30.9
Q ss_pred cccEEEEcc-hHHHHHHHHHHh--CCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATALSF--KGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr--~GlrVlLIEr~~~~~ 145 (549)
...|+|||| |+|+.+|..|++ .|++|.|+||.+.++
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 478999996 568889989986 799999999998764
|
|
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.016 Score=61.67 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcCCcEEEcCEEEEccCCChHHHH
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVVK 265 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~dG~~i~ArlVI~ADG~~S~vrr 265 (549)
+-.++.+-++++|++|+.+.+|.+|..+++.+ -|.++||++++++.||-=.+.+-..-+
T Consensus 266 vs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~k 325 (561)
T KOG4254|consen 266 VSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEK 325 (561)
T ss_pred HHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHH
Confidence 34567778888999999999999998887543 377889999999999976665544433
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.1 Score=55.90 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=61.6
Q ss_pred ccEEEEcchH-HHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGTL-GIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
--|||+|||- |+.+|..|+++ +.+|+||||+.+--... .| -++.. +.+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p----------lL-----------~eva~-----g~l--- 54 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP----------LL-----------YEVAT-----GTL--- 54 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch----------hh-----------hhhhc-----CCC---
Confidence 4599999995 77788899987 48999999987522100 01 00100 111
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
+...+..-+.+-++..+ +++ ...+|++|+.+.. +|+++++..+..|.||-|.|...
T Consensus 55 ---------------~~~~i~~p~~~~~~~~~~v~~-~~~~V~~ID~~~k--~V~~~~~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 55 ---------------SESEIAIPLRALLRKSGNVQF-VQGEVTDIDRDAK--KVTLADLGEISYDYLVVALGSET 111 (405)
T ss_pred ---------------ChhheeccHHHHhcccCceEE-EEEEEEEEcccCC--EEEeCCCccccccEEEEecCCcC
Confidence 00000111122233333 444 4557888877655 45565667899999999999874
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.24 Score=50.05 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=60.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+|+||| .|.-+|..|++.|.+|.++++.+... . .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------~------------------------------------~ 179 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------A------------------------------------E 179 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC------c------------------------------------C
Confidence 379999976 58888999999999999998753100 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEc---CC--cEEEcCEEEEccCCCh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~---dG--~~i~ArlVI~ADG~~S 261 (549)
..+.+.+.+. |++++.++.++++..++.-..+.+. ++ +++.+|.||-|.|...
T Consensus 180 -------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 180 -------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred -------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 0122334455 8899999999998765432223332 23 4799999999999654
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.039 Score=53.34 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=30.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~ 145 (549)
.-||||||+| +|+++|+..+++ .++|++||....|+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 4699999966 699999988843 89999999987776
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.17 Score=49.52 Aligned_cols=114 Identities=22% Similarity=0.345 Sum_probs=73.8
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||| ||++-++|+.++|+-+|-+|+|-....+ |.++.. +.+..++|. | | .|.
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~------i~pGGQ-------LtTTT~veN-----f-P---GFP-- 64 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG------IAPGGQ-------LTTTTDVEN-----F-P---GFP-- 64 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC------cCCCce-------eeeeecccc-----C-C---CCC--
Confidence 4799999 6778899999999999999999543322 111100 001111111 1 0 111
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
+ ++.-..|-+.++++....|.+++.. +|.+++....-+++.+ |.+.++|+-||-|+|+.
T Consensus 65 ------d----gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAs 123 (322)
T KOG0404|consen 65 ------D----GITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGAS 123 (322)
T ss_pred ------c----ccccHHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccc
Confidence 1 1222356677788888888888654 5788877777777766 55679999999999975
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.24 Score=55.01 Aligned_cols=89 Identities=20% Similarity=0.184 Sum_probs=62.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... .
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~--------------------------------------------~ 389 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK--------------------------------------------A 389 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------h
Confidence 69999987 59999999999999999998643100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEE-EEEcC---C--cEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~d---G--~~i~ArlVI~ADG~~S 261 (549)
...+.+.+.+ .|++++.++.++++..+++.+. |.+.+ + +++.++.||-|.|...
T Consensus 390 -----------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 390 -----------------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred -----------------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 0012233333 5889999999999876545543 55432 2 3799999999999654
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.052 Score=61.96 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=31.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+||||| +|+++|..|++.|++|+++|+.+.++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 4689999965 69999999999999999999988654
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.037 Score=62.13 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEEC--CE----EEEEEc---CCcEEEcCEEEEccCCC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA----AVLLLA---EGKILSSHLIIDAMGNF 260 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dg----v~V~~~---dG~~i~ArlVI~ADG~~ 260 (549)
|.+.+.+.+++.|++|+.+++|.++..+. ++ ..|++. +++++.||.||-|.+..
T Consensus 297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 55667778888999999999999998873 33 224442 34479999999999976
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.15 Score=54.93 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=19.3
Q ss_pred cCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 386 AFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 386 ~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
..+++..+|-.-+-.||+. +|-|++
T Consensus 381 ~~~Nl~a~G~vL~G~d~~~-~gcG~G 405 (419)
T TIGR03378 381 TIENLYAIGAVLGGYDPIF-EGCGSG 405 (419)
T ss_pred ccccceEechhhcCCChHh-cCCCch
Confidence 3689999999999999985 444443
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.065 Score=60.21 Aligned_cols=36 Identities=33% Similarity=0.326 Sum_probs=30.7
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.-+|+|+|+ ++|+++|..|++.|++|+++|+.+..+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 357999995 569999999999999999999887543
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.045 Score=62.60 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=30.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
..+|+||||| +|+++|..|++.|++|+|+|+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4799999965 6999999999999999999998754
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.11 Score=53.20 Aligned_cols=50 Identities=30% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCCcccEEEEcchH-HHHHHHHHHhC-C-CcEEEEccCCCCCCCccccCCHHH
Q 008915 107 AVGTFDVIVCGGTL-GIFIATALSFK-G-LRVAIVERNTLKGREQEWNISRKE 156 (549)
Q Consensus 107 ~~~~yDVIIVGGg~-G~~~Aa~LAr~-G-lrVlLIEr~~~~~~~r~~~IS~~~ 156 (549)
...+|.|+|||||. |+.+|+.+.++ | =+|.+||....--....|.+..+.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgG 88 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGG 88 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccc
Confidence 34479999999986 77888888865 3 378888865432222345444443
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.32 Score=52.43 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=72.0
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~~ 191 (549)
|+++||| +|+-.|+.|...+++|++|++.+.+- .+ +
T Consensus 216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~---------------~~--l-------------------------- 252 (478)
T KOG1336|consen 216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL---------------PR--L-------------------------- 252 (478)
T ss_pred EEEECchHHHHHHHHHHHhcCceEEEEccCccch---------------hh--h--------------------------
Confidence 8999988 69999999998899999998764211 00 0
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE--EEEEEcCCcEEEcCEEEEccCCChH
Q 008915 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.. ..+.+...+.+++.|++++.+|.+.++..+++| ..|.+.||+++.|++||-..|+.+.
T Consensus 253 -f~----------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 253 -FG----------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred -hh----------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 00 112334455666789999999999999888755 3466779999999999999997754
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.49 Score=48.73 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcC--CEEEeCceEEEEEEECCEEE-EEE--cCCc--EEEcCEEEEccCCChH
Q 008915 207 LIEIVKKRFISLG--GVIFEGYSVSSICTYENAAV-LLL--AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 207 L~~~L~~~a~~~G--~~v~~~t~v~~i~~~~dgv~-V~~--~dG~--~i~ArlVI~ADG~~S~ 262 (549)
|...|.+.+.+.. +++..+++|+++..+++.|. |.. .+|+ .+.++-||-|+|..+-
T Consensus 145 L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 145 LSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 4444555554443 38899999999997766543 333 2344 6889999999998874
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.12 Score=58.55 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=31.3
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+|||+ ++|+++|..|+++|++|+|+|+.+.++
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 578999996 469999999999999999999987653
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.058 Score=58.51 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHHhc
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrql~ 268 (549)
|.+.|.+++. ++++.+++|+.+..+..+..+...+|.++++|-||-+ +-...+.+.++
T Consensus 217 l~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t-~p~~~l~~ll~ 274 (444)
T COG1232 217 LIEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVIST-APLPELARLLG 274 (444)
T ss_pred HHHHHHHHhh---hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEc-CCHHHHHHHcC
Confidence 4444554443 4599999999999987788888878888999999954 33334444443
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.079 Score=55.74 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=30.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+|+||||| +|+.+|..|++.|++|.++|+.+.++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 3689999975 69999999999999999999987643
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.066 Score=64.97 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=32.0
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
....+||+||||| .|+++|+.|++.|++|+|+|+...+
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 3445899999976 5888999999999999999987544
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.63 Score=48.96 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 209 ~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
+.+.+.+.+.|++++.+++++++. ++ .|.+.+|+++.+++||-|.|...
T Consensus 195 ~~~~~~l~~~gV~v~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 195 RLVLRLLARRGIEVHEGAPVTRGP--DG--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHCCCEEEeCCeeEEEc--CC--eEEeCCCCEEecCEEEEccCCCh
Confidence 445566677899999999999874 33 45666788999999999999664
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.086 Score=58.16 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=30.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
..+|+||||| +|+++|..|+++|++|+|+|+.+.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3699999965 6999999999999999999988754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.077 Score=62.39 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=28.6
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCcEEEEccC
Q 008915 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
...|+|||| |+|+++|..|++.|++|+|+|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 468999995 56999999999999999999985
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.083 Score=61.61 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=31.3
Q ss_pred EEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEcc
Q 008915 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 221 ~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~AD 257 (549)
.|+.++.|+.|...+++|.|++. +++++||.||.|-
T Consensus 392 ~I~Ln~~Vt~I~~~~dgV~V~~~-~~~~~AD~VIvTV 427 (881)
T PLN03000 392 PILYEKTVQTIRYGSNGVKVIAG-NQVYEGDMVLCTV 427 (881)
T ss_pred CcccCCcEEEEEECCCeEEEEEC-CcEEEeceEEEcC
Confidence 58899999999999999999874 4589999999776
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=93.39 E-value=14 Score=40.09 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=30.9
Q ss_pred cccEEEEcchH-HHHHHHHHHhC----CCcEEEEccCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFK----GLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~----GlrVlLIEr~~~~ 144 (549)
+.||+|||||+ |+++|..|+++ |++|+|+|+....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 47999999875 99999999998 9999999998754
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.13 Score=56.29 Aligned_cols=55 Identities=33% Similarity=0.382 Sum_probs=43.4
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCCC---------CccccCCHHHHHHHHHcCC
Q 008915 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR---------EQEWNISRKELLELVESGI 165 (549)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~~---------~r~~~IS~~~l~~L~~lGl 165 (549)
-.|.|||+ |+|+++|..|++.|+.|+++|+.+.++. .-.-.|....++.|.+.|+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv 188 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGV 188 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCe
Confidence 57999995 6799999999999999999999987642 1112466678888888883
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=92.95 E-value=1 Score=49.17 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+||||| .|+-+|..|++.|.+|.++++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999987 59999999999999999998764
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=1.1 Score=48.89 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=26.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-cEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.|+||||| .|.-+|..|++.|. +|.++++..
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999987 59989999999998 899998753
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.94 Score=47.61 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=26.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCc-EEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
.|+|+||| .|+-+|..|++.|.+ |.|+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 59999976 599999999989997 99998753
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.92 Score=50.44 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=61.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
+|+||||| .|.-+|..|+..|.+|.|+++.+.... .
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------------------------------------~- 389 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------------------------------------D- 389 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------------------------------------------c-
Confidence 69999987 599999999999999999986542100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEE-EEEc---CCc--EEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG~--~i~ArlVI~ADG~~S 261 (549)
+.+.+++.+ .|++++.++.++++..+++.+. |.+. +|+ ++.+|.|+-|.|...
T Consensus 390 ------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 390 ------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred ------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 011122333 4789999999999976544433 4443 233 699999999988654
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=92.37 E-value=1.3 Score=46.50 Aligned_cols=129 Identities=19% Similarity=0.093 Sum_probs=67.8
Q ss_pred cccEEEEcchH-HHHHHHHHHhCC--CcEEEEccCCCCCCC------ccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKG--LRVAIVERNTLKGRE------QEWNISRKELLELVESGILVEDDIDEATATKFN 180 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~G--lrVlLIEr~~~~~~~------r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~ 180 (549)
...|+|||||- ++-++..|.+++ .+|.+|=|.+..... .+| .++.-+..+..+.- +.+..+..+.
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~-f~P~~v~~f~~l~~----~~R~~~l~~~- 263 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEI-FSPEYVDYFYSLPD----EERRELLREQ- 263 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGG-GSHHHHHHHHTS-H----HHHHHHHHHT-
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhh-cCchhhhhhhcCCH----HHHHHHHHHh-
Confidence 57799999884 777888887766 489898887643211 011 33433333322210 0011111110
Q ss_pred CCcccccCCcccccccccc-ceeCHHHHHH---HHH-HHHHhc-CCEEEeCceEEEEEEECC-EEEEEEcC---C--cEE
Q 008915 181 PNRCGFEGKGEIWVEDILN-LGVSPAKLIE---IVK-KRFISL-GGVIFEGYSVSSICTYEN-AAVLLLAE---G--KIL 248 (549)
Q Consensus 181 ~~~i~f~~~~~l~~~~~l~-~~V~~~~L~~---~L~-~~a~~~-G~~v~~~t~v~~i~~~~d-gv~V~~~d---G--~~i 248 (549)
...+ -+|+++.+.+ .|. +++... ...++.+++|+++...++ ++.+++.+ + .++
T Consensus 264 ---------------~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~ 328 (341)
T PF13434_consen 264 ---------------RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETL 328 (341)
T ss_dssp ---------------GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEE
T ss_pred ---------------HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEE
Confidence 0011 2456554432 222 233222 358999999999999885 88888864 2 379
Q ss_pred EcCEEEEccCC
Q 008915 249 SSHLIIDAMGN 259 (549)
Q Consensus 249 ~ArlVI~ADG~ 259 (549)
.+|.||.|+|.
T Consensus 329 ~~D~VilATGy 339 (341)
T PF13434_consen 329 EVDAVILATGY 339 (341)
T ss_dssp EESEEEE---E
T ss_pred ecCEEEEcCCc
Confidence 99999999995
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.29 Score=55.39 Aligned_cols=104 Identities=19% Similarity=0.320 Sum_probs=72.9
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~~ 191 (549)
.+||||| +|+=+|..|...|++|.+++=.+. | ++. +
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~----------------l----------Mer----Q------------- 184 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT----------------L----------MER----Q------------- 184 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeecch----------------H----------HHH----h-------------
Confidence 4788877 599999999999999999973321 0 000 0
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC--hHHHHHhcC
Q 008915 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF--SPVVKQIRS 269 (549)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~--S~vrrql~~ 269 (549)
+|+ .=.+.|..++.+.|.+++.+...+.+...+.-..|.++||..+.|++||-|+|.. .-++++.++
T Consensus 185 ----------LD~-~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGl 253 (793)
T COG1251 185 ----------LDR-TAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGL 253 (793)
T ss_pred ----------hhh-HHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCc
Confidence 000 0123456666777888888888877766444456888899999999999999975 456777655
Q ss_pred C
Q 008915 270 G 270 (549)
Q Consensus 270 ~ 270 (549)
.
T Consensus 254 a 254 (793)
T COG1251 254 A 254 (793)
T ss_pred C
Confidence 4
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.22 Score=54.69 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=29.3
Q ss_pred cccEEEEcc-hHHHHHHHHH-HhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGG-TLGIFIATAL-SFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~L-Ar~GlrVlLIEr~~~~~ 145 (549)
..-|+|||| |+|+.+|..| ++.|++|.|+||.+.|+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 356999996 5688888865 56799999999998775
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.69 Score=51.03 Aligned_cols=35 Identities=40% Similarity=0.729 Sum_probs=31.6
Q ss_pred ccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
|||||||||+ |+++|+.||++|++|+|+||+..++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 36 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG 36 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence 7999999886 8888889999999999999998764
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.96 Score=54.37 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=64.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
.|+|+||| .|+-+|..|++.|. .|.|+|+.+.. .
T Consensus 319 ~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------~------------------------------------ 354 (985)
T TIGR01372 319 RIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------S------------------------------------ 354 (985)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------h------------------------------------
Confidence 58899965 58889999999995 47888754210 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC--EEEEEEc--CCcEEEcCEEEEccCCChH--H
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLA--EGKILSSHLIIDAMGNFSP--V 263 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d--gv~V~~~--dG~~i~ArlVI~ADG~~S~--v 263 (549)
..+.+++++.|++++.++.++.+..++. ++++... +++++.||.|+-+.|.... +
T Consensus 355 -------------------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L 415 (985)
T TIGR01372 355 -------------------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHL 415 (985)
T ss_pred -------------------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHH
Confidence 0022345667899999999988865433 2333321 3558999999999997654 5
Q ss_pred HHHhcCC
Q 008915 264 VKQIRSG 270 (549)
Q Consensus 264 rrql~~~ 270 (549)
.++++..
T Consensus 416 ~~~lg~~ 422 (985)
T TIGR01372 416 FSQRGGK 422 (985)
T ss_pred HHhcCCC
Confidence 5666543
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.2 Score=53.43 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=28.6
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEE--EEccCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVA--IVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVl--LIEr~~~ 143 (549)
.-+|+|||||+ |+++|+.|++++.+|. |+|..+-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R 47 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR 47 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence 57899999885 9999999999988774 4998764
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.4 Score=48.30 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=32.3
Q ss_pred HHHHhcCCEEEeCceEEEEEEECCEEE-EEE-----cCC---------cEEEcCEEEEccCCC
Q 008915 213 KRFISLGGVIFEGYSVSSICTYENAAV-LLL-----AEG---------KILSSHLIIDAMGNF 260 (549)
Q Consensus 213 ~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~-----~dG---------~~i~ArlVI~ADG~~ 260 (549)
+.+.+.|++++.++.++++..+++.++ |++ .+| .++.+|.||-|.|..
T Consensus 337 ~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~ 399 (471)
T PRK12810 337 SNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFT 399 (471)
T ss_pred HHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcC
Confidence 445567999999999999865444443 322 122 368888888888844
|
|
| >KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.23 Score=52.45 Aligned_cols=37 Identities=32% Similarity=0.386 Sum_probs=32.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..|||||+|-| +=+.+|++-+|.|.+|+-+|++++-+
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYG 44 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccC
Confidence 47999999955 57788888899999999999999865
|
|
| >COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.25 Score=51.67 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=31.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.|||||+|-| .=+..+++|+..|.+|++|||+..-+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 6999999955 58899999999999999999998743
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=1.9 Score=47.23 Aligned_cols=31 Identities=32% Similarity=0.344 Sum_probs=27.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+||||| .|+-+|..|++.|.+|.|+++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999987 59889999999999999998754
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.32 Score=44.27 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=26.6
Q ss_pred EEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|+|+ .+|+..|+.|++.|++|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 689995 579999999999999999998764
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.1 Score=49.32 Aligned_cols=33 Identities=30% Similarity=0.559 Sum_probs=29.5
Q ss_pred EEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 113 VIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 113 VIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
|||||||+ |+++|+.||++|++|+|+||+..++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence 68999885 8888889999999999999998765
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.3 Score=45.33 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=26.7
Q ss_pred EEEEcchH-HHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGTL-GIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+|||. |.++|..|+++|++|.|..|.+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 78999875 9999999999999999998764
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.14 Score=54.08 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=35.1
Q ss_pred cCCEEEeCceEEEEEEECCEEEEEEcCC-cEEEcCEEEEccCCChHH
Q 008915 218 LGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 218 ~G~~v~~~t~v~~i~~~~dgv~V~~~dG-~~i~ArlVI~ADG~~S~v 263 (549)
.|++...+.++..+....++..+.+++| +..+++-+| ||+.--+-
T Consensus 245 yGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi-~dpSY~~~ 290 (440)
T KOG1439|consen 245 YGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVI-CDPSYFPQ 290 (440)
T ss_pred cCceeecCCceeeeeccCCccEEEEecCCceeecceEE-ecCccchH
Confidence 4889999999999998777888888764 467888555 88866543
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.35 Score=46.04 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=25.4
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+|+| +|...|..+|+.|++|.|+|+.+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 7899965 79999999999999999999864
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.81 Score=46.86 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=26.6
Q ss_pred EEEEcc-h-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG-T-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG-g-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| | +|+-++..|.++|++|+++|.-.
T Consensus 3 iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~ 34 (329)
T COG1087 3 VLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLS 34 (329)
T ss_pred EEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Confidence 789996 7 79999999999999999999544
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.1 Score=45.26 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=40.2
Q ss_pred HhcCCEEEeCceEEEEEEECC-EEEEEEcC---Cc--EEEcCEEEEccCCChHHHHHhc
Q 008915 216 ISLGGVIFEGYSVSSICTYEN-AAVLLLAE---GK--ILSSHLIIDAMGNFSPVVKQIR 268 (549)
Q Consensus 216 ~~~G~~v~~~t~v~~i~~~~d-gv~V~~~d---G~--~i~ArlVI~ADG~~S~vrrql~ 268 (549)
...|.++..+|.|+.++.+.| .+.|++.+ ++ +++||.+..|-|++ |.-+-|+
T Consensus 263 ~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr-P~t~GLg 320 (506)
T KOG1335|consen 263 QKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR-PFTEGLG 320 (506)
T ss_pred HhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc-ccccCCC
Confidence 346889999999999999888 56666653 33 79999999999976 4444443
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.51 Score=45.78 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=28.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.-|+|+| ||+|+..|..|++.|+ ++.|+|...
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5699999 6799999999999999 599999764
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK13230 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=88.33 E-value=0.41 Score=48.63 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=25.1
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~~ 143 (549)
++|+| ||+|=++ |.+||++|.||+|||-.+-
T Consensus 4 i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 4 FCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc
Confidence 56779 8887664 7788999999999997654
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.52 Score=50.06 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=56.4
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC--ChHHHHH
Q 008915 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN--FSPVVKQ 266 (549)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~--~S~vrrq 266 (549)
|-|+.|-++-.++.+..|+.++.+..|.++......+.+.++||.+++.|+||.|.|- +|-++..
T Consensus 390 iLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~ 456 (659)
T KOG1346|consen 390 ILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEA 456 (659)
T ss_pred hhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccc
Confidence 3456777888889998999999999999999988899999999999999999999994 5666654
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.86 Score=45.22 Aligned_cols=50 Identities=26% Similarity=0.415 Sum_probs=35.9
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCCCCCCccccCCHHHHHHHHHcC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESG 164 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lG 164 (549)
--|+|+| ||+|+-++-+|||.|+ +..|||.....-. |+.+.-...+..+|
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vT----N~NRQi~A~~~~iG 82 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVT----NTNRQIHALLGDIG 82 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccc----ccchhhHhhhhhcc
Confidence 4599999 9999999999999997 6889998765322 34444333444444
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.84 Score=49.72 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=29.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
-+|+||||| .|+-+|..|++.|.+|.|+|+.+..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 369999976 5999999999999999999987643
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=0.62 Score=50.78 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=29.0
Q ss_pred EEEEc-chHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
|.|+| |+.|.++|..|+++|++|.+.|+...+.
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~ 36 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE 36 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 78999 6789999999999999999999887543
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=87.75 E-value=0.49 Score=45.31 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=23.9
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+|-| +|+.+|+.||++|++|..+|..+
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899955 89999999999999999999654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=87.74 E-value=39 Score=37.11 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=29.7
Q ss_pred cEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 112 DVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 112 DVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+|+|||||+ |+++|..|+++|++|+|+|+++.++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 489999875 8899999999999999999987654
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=87.52 E-value=4 Score=47.68 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=26.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCc-EEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
.||||||| .|+-+|..+.+.|.+ |.|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999987 588899999999997 99998754
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.65 Score=47.99 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=28.2
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
..|.|+| |++|+..|+.|++.|.+|.++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3599999 5679999999999999999999853
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.63 Score=45.98 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=39.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC--------CccccCCHHHHHHHHHcCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR--------EQEWNISRKELLELVESGILV 167 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~--------~r~~~IS~~~l~~L~~lGl~~ 167 (549)
.++|+|+| .|...|-.|++.|+.|++||+.+..-. ......+......|.++|+-+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCc
Confidence 58999965 799999999999999999998864210 011112233455777888653
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.01 E-value=0.65 Score=47.98 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=28.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 59999966 69999999999999999999875
|
|
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.99 E-value=0.53 Score=47.65 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=24.6
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~~ 143 (549)
|.|+| ||+|-++ |++||++|.||+|||-.+.
T Consensus 4 iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq 40 (273)
T PRK13232 4 IAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPK 40 (273)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccc
Confidence 44558 8887765 7788999999999997654
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=86.51 E-value=0.82 Score=48.08 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=28.7
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.-|+||| ||+|+.+|..|++.|+ ++.|+|...
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4599999 6899999999999999 899999854
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.49 E-value=0.83 Score=48.01 Aligned_cols=33 Identities=33% Similarity=0.577 Sum_probs=29.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
.-|+||| ||+|+.+|..|++.|+ ++.|+|+...
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4599999 6799999999999998 8899998753
|
|
| >PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) | Back alignment and domain information |
|---|
Probab=86.40 E-value=1.4 Score=46.18 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=40.4
Q ss_pred HHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 211 VKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 211 L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
+...+...|.+|+.+++|++|..+++++.|.+.+|++++||.||.|....
T Consensus 215 ~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 215 LALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPS 264 (450)
T ss_dssp HHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HH
T ss_pred HHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchh
Confidence 33344445779999999999999999999999999999999999887644
|
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A .... |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=86.35 E-value=1.1 Score=40.62 Aligned_cols=31 Identities=32% Similarity=0.629 Sum_probs=27.4
Q ss_pred EEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
|+|+| ||+|+.+|..|++.|+ ++.++|....
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 78999 7899999999999998 6999997653
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=86.25 E-value=1.8 Score=47.72 Aligned_cols=36 Identities=39% Similarity=0.672 Sum_probs=33.0
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.|||||||||. |+++|+.||++|++|+|+||+..++
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G 39 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence 69999999886 8889999999999999999998765
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=86.09 E-value=0.97 Score=43.82 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=29.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
.-|+|+| ||+|+.+|..|++.|. ++.|+|....
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 4599999 7899999999999998 8999997653
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.84 E-value=0.84 Score=46.64 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999966 69999999999999999999764
|
|
| >TIGR03467 HpnE squalene-associated FAD-dependent desaturase | Back alignment and domain information |
|---|
Probab=85.77 E-value=1.9 Score=45.71 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc-CCcEEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-dG~~i~ArlVI~ADG~~ 260 (549)
.+.+.|.+.+++.|++|+.+++|++|..+++++++.+. +|+++.||.||.|.-..
T Consensus 198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence 34455777777789999999999999998888766543 67789999999986543
|
The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. |
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=85.75 E-value=2 Score=47.54 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=30.7
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCC-cEEEEccCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGL-RVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~Gl-rVlLIEr~~~~ 144 (549)
.+||||||||+ |+++|..|+++|+ +|+|+|++...
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 68999999875 9999999999998 59999998753
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=85.67 E-value=1.1 Score=42.42 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=27.0
Q ss_pred EEEEc-chHHHHHHHHHHhCCCc-EEEEccCC
Q 008915 113 VIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
|+|+| ||+|+..|..|++.|+. +.++|...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 78999 78999999999999995 99999765
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.33 E-value=1.2 Score=46.13 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=28.1
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-.|.|+|+ .+|++.|..|+++|++|.++.|..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 46999995 579999999999999999999864
|
|
| >TIGR01287 nifH nitrogenase iron protein | Back alignment and domain information |
|---|
Probab=85.28 E-value=0.75 Score=46.54 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=24.5
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|.|.| ||+|-+ +|.+||++|+||+|||-.+-
T Consensus 3 ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q 39 (275)
T TIGR01287 3 IAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPK 39 (275)
T ss_pred eEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 67889 887665 46678899999999997654
|
This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=85.23 E-value=1.1 Score=40.31 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=28.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
.-|+|+| |++|+.+|..|++.|+ ++.|+|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 3489999 6789999999999999 6899997654
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK13235 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.95 E-value=0.84 Score=46.22 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=24.0
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~~ 143 (549)
|.|+| ||+|=++ |++||+.|.||+|||-.+-
T Consensus 4 iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq 40 (274)
T PRK13235 4 VAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPK 40 (274)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 45668 8877654 7778999999999997654
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.77 E-value=1 Score=46.19 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=28.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
-|.|+|+| +|.-.|..++++|++|.++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 48999965 799999999999999999998764
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.67 E-value=1 Score=46.08 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=27.2
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 8999966 69999999999999999999865
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=84.65 E-value=1.1 Score=45.45 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=28.3
Q ss_pred ccEEEEc-chHHHHHHHHHHhCC-CcEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~G-lrVlLIEr~~~ 143 (549)
.-|+|+| ||+|+.+|-.||+.| -++.|+|....
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 4699999 789999999999999 57999996543
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=84.43 E-value=9.5 Score=43.82 Aligned_cols=31 Identities=35% Similarity=0.359 Sum_probs=25.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-cEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.|+||||| .|.-+|..+.+.|. +|.|+++..
T Consensus 325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 59999987 58888888888887 599998764
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=3.6 Score=44.94 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=33.3
Q ss_pred CcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+|||||||+|+ |+++|+.|+++|.||+++||+...+
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG 40 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG 40 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence 379999999885 9999999999999999999997654
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=84.10 E-value=0.88 Score=45.80 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=23.8
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.| ||+|=+ +|..||++|.||+|||-.+
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 56778 777654 4677889999999999765
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.09 E-value=1.2 Score=45.43 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=26.3
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
|.|+|+| +|++.|..|++.|++|.+++|.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 8899955 7999999999999999999985
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=83.85 E-value=1.7 Score=39.26 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=27.8
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCc-EEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
--|+|+| ||+|.+++..|+..|.+ |.|+-|..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 4699999 68999999999999998 99998753
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.80 E-value=1.2 Score=46.39 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=27.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|||+| +|...|..++.+|++|.++|+.+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999965 79999999999999999999875
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.62 E-value=1.3 Score=48.68 Aligned_cols=31 Identities=35% Similarity=0.418 Sum_probs=27.3
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+|+|+ +.|+.+|..|+++|++|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5999995 579999999999999999999764
|
|
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Probab=83.58 E-value=0.97 Score=45.47 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=23.2
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|.| ||+|=++ |.+||++|.||+|||-.+
T Consensus 3 i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 3 LAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred EEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 55667 7876653 667889999999999765
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.58 E-value=1.3 Score=45.33 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.7
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVER 140 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr 140 (549)
|.|+|+| +|++.|..|+++|++|.+++|
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 8899955 799999999999999999997
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=83.34 E-value=5.7 Score=43.08 Aligned_cols=33 Identities=42% Similarity=0.617 Sum_probs=28.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
+|||+||||| +|+++|+.|+++|++|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999976 58889999999999999999864
|
|
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
Probab=83.23 E-value=0.99 Score=45.25 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=23.8
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|+| ||+|-+ +|..||++|.||+|||-.+.
T Consensus 4 iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 4 IAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred EEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 56668 787665 36678899999999997654
|
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=82.66 E-value=1.7 Score=42.51 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=28.2
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCc-EEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
.-|+|+| ||+|+.+|..|++.|+. +.++|...
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5699999 78999999999999986 89999764
|
|
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=82.62 E-value=1.3 Score=42.90 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=23.8
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|.|.| ||.|-+ +|..||++|.||+|||-.+.
T Consensus 3 iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q 39 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPK 39 (212)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 56778 887665 46678899999999996543
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.38 E-value=1.5 Score=44.93 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999965 69999999999999999999864
|
|
| >PRK13236 nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=82.12 E-value=1.2 Score=45.92 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=24.3
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCCCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~~~ 144 (549)
+.+.| ||+|-++ |+.||++|.||+|||-.+-.
T Consensus 9 ~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~ 46 (296)
T PRK13236 9 IAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKA 46 (296)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 44566 7776654 77889999999999976643
|
|
| >PRK13234 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=82.07 E-value=1.2 Score=45.74 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=23.4
Q ss_pred EEEc-chHHHHH-----HHHHHhCCCcEEEEccCCC
Q 008915 114 IVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 114 IIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~~ 143 (549)
.|.| ||+|-++ |++||+.|.||+|||-.+-
T Consensus 8 ai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 8 AFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred EEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3447 7887765 7788999999999996653
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.04 E-value=1.5 Score=44.80 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38999965 79999999999999999999865
|
|
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=81.59 E-value=1.3 Score=45.54 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=24.7
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~~ 143 (549)
++|.| ||+|=+ +|++||+.|.||+|||-.+-
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 67889 887544 57788999999999997654
|
|
| >PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=81.55 E-value=1.2 Score=44.75 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=22.9
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCcEEEEccCC
Q 008915 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+| ||+|-++ |..||++|.||+|||-.+
T Consensus 5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp 40 (270)
T PRK13185 5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP 40 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 44557 7776654 677889999999999664
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=81.01 E-value=2.2 Score=36.84 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=26.0
Q ss_pred EEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|||||. ..|-.+|-.|.+.+.+|.++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 689995 579999999999888999999875
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=80.95 E-value=2.1 Score=42.69 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=27.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
..|+|+| ||+|+.+|..|++.|+ ++.++|....
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 5699999 7899999999999986 5677776543
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=80.86 E-value=2.1 Score=41.53 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=26.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
--|+||||| +|...|..|.+.|.+|.|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 369999976 7999999999999999999853
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.1e+02 Score=34.76 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=42.7
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCCC-C------cc----------ccCCHHHHHHHHHcCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGR-E------QE----------WNISRKELLELVESGILV 167 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~~-~------r~----------~~IS~~~l~~L~~lGl~~ 167 (549)
..+|+|||||+ |+++|..|+++|++|+|+|+.+.++. . .. +...+..+..|.++|+.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~ 150 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADE 150 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcc
Confidence 46899999774 88999999999999999999876541 1 01 112245677888888754
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=80.55 E-value=2.1 Score=42.59 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=28.3
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
.-|+|+| ||+|+.+|-.|++.|+ +..|+|....
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4599999 7899999999999998 7888886543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=80.47 E-value=16 Score=41.90 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=25.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-cEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.|+||||| .|.-+|..+.+.|. +|.++.+..
T Consensus 470 ~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 69999987 58888888888886 699888753
|
|
| >PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) | Back alignment and domain information |
|---|
Probab=80.23 E-value=1.6 Score=45.65 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 120 LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 120 ~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+|+++|..|+++|++|+|+|+...++
T Consensus 2 aGL~aA~~L~~~G~~v~vlEa~~r~G 27 (450)
T PF01593_consen 2 AGLAAAYYLAKAGYDVTVLEASDRVG 27 (450)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSSSSB
T ss_pred hHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 58999999999999999999987653
|
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A .... |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.14 E-value=2 Score=44.78 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=26.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
.|.|+|.| +|+..|..|+++|++|.+++|.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 48999955 7999999999999999999974
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.01 E-value=2.2 Score=45.14 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=28.5
Q ss_pred ccEEEEc-chHHHHHHHHHHh--CCCcEEEEccCCCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSF--KGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr--~GlrVlLIEr~~~~~ 145 (549)
.-|.||| ||+|.-+|..|-+ .++.|.++|+.+.|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 3699999 5679989887655 489999999998764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 5e-09
Identities = 87/592 (14%), Positives = 169/592 (28%), Gaps = 182/592 (30%)
Query: 7 RHFNGVSHF-PSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG------ 59
R +N F V + + L R +++ + G V G+G
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLEL--------RPAKNVLIDG-VLGSGKTWVAL 168
Query: 60 -GAYSYDALKRLD-QI-WSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVC 116
SY ++D +I W N+ + + + ++ + L Q D +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK----LLYQIDPN------------ 212
Query: 117 GGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDI-DEAT 175
+ + + +++ I R + LL +L ++ +
Sbjct: 213 ------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL------VL--LNVQNAKA 258
Query: 176 ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE 235
FN C K IL + RF + + + + I
Sbjct: 259 WNAFN-LSC----K-------IL------------LTTRFKQVTDFL-SAATTTHISLDH 293
Query: 236 NAAVLLLAEGK-ILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDN-STS 293
++ L E K +L +L + V P + A +D +T
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTT----NP----RRLSIIAESIRDGLATW 344
Query: 294 D------------VIYSSSSVKKVGDSEVQ-LFWE--AFPAGSGPLDRTTYMFTYIDPQA 338
D +I SS+ + +E + +F FP +I
Sbjct: 345 DNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSVFPPS-----------AHI---- 387
Query: 339 GSPKLEELLERYWDLMPEY-QGVTLDNLEIQRVI--------YGIFPTYRDSPLPA---- 385
P LL W + + V ++ L ++ I Y + +
Sbjct: 388 --P--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 386 --------AFNRILQFGDASGIQSPVSFGGFGS-LTRHLGRLSTGVYEAVRGDFVDSYSL 436
+N F D+ + P F S + HL + + + +
Sbjct: 444 ALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSHIGHHL-------KNIEHPERMTLFRM 495
Query: 437 SLLNPYMKLGDPVLRPFLQ-----VLLDVIKFGPLAKTLGLVMLNKPQIIPS--IFKQVG 489
L+ R FL+ G + TL + KP I + +++
Sbjct: 496 VFLD---------FR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER-- 543
Query: 490 IPVLVDWSGHFFM-LGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWK 540
LV+ F + + S + D + +L+ + EA K
Sbjct: 544 ---LVNAILDFLPKIEENLICSKYTDLLRIALMA---EDEAI----FEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 8e-07
Identities = 79/586 (13%), Positives = 165/586 (28%), Gaps = 207/586 (35%)
Query: 3 FLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAY 62
F+ V P + K ++ I + A S T R+ ++ E
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAV--SGTLRLFWTLLSKQE-------- 76
Query: 63 SYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGI 122
+ VQ+ +++V+ N
Sbjct: 77 ------------------EMVQKFVEEVLRINYK-------------------------- 92
Query: 123 FIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKE--------LLEL-VESG 164
F+ + + + + +++ R ++ R++ +N +SR + LLEL
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 165 ILVEDDI-------------DEATATKFNPNRCGFEGKGEI-WVEDILNLG--VSPAKLI 208
+L++ + K + +I W LNL SP ++
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMD---------FKIFW----LNLKNCNSPETVL 199
Query: 209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268
E+++K + + + + + + L H I + ++
Sbjct: 200 EMLQKLLYQI---------DPNWTSRSDHSSNI-----KLRIHSIQAELRRL------LK 239
Query: 269 SGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328
S + CL+V N V +++ W AF L TT
Sbjct: 240 SKPYEN--CLLV-------LLN--------------VQNAKA---WNAFNLSCKIL-LTT 272
Query: 329 YMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTY---RDSPLPA 385
D L + L +T D ++ + Y R LP
Sbjct: 273 RFKQVTD------FLSAATTTHISLDHHSMTLTPDEVK------SLLLKYLDCRPQDLPR 320
Query: 386 AFNRILQFGDASGIQSPVSFGGFGSLTR-HLGRLSTGVYEAVRGDFVD---SYSLSLLNP 441
+ +P R L ++ V D + SL++L P
Sbjct: 321 ---------EVLTT-NPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLNVLEP 368
Query: 442 ------YMKLGDPVLRPFLQVLLDV-IKFGPLAKTLGLVMLN-KPQIIPSIFKQVGIPVL 493
+ +L V P I P L L+ + + + ++ L
Sbjct: 369 AEYRKMFDRLS--VFPP------SAHI---P-TILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 494 VDWSGHFFMLGYYTLLSTFADPVI------RSLLNAFPPRMKYEWN 533
V+ + ++ + RS+++ + ++ +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 50/317 (15%), Positives = 97/317 (30%), Gaps = 42/317 (13%)
Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-------ISRKELLELVE 162
+DV++ G G G A LS +GL++ +V+ +S+ +L
Sbjct: 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDS----KPWNRIGDKPCGDAVSKAHFDKLGM 62
Query: 163 SGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVI 222
E K N + +W + ++ + V K G I
Sbjct: 63 -----PYPKGEELENKINGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEI 117
Query: 223 FEGYSVSSICTYENAAVLLLA------EGKILSSHLIIDAMGNFSPVVKQI--RSGRKPD 274
++ + + + E + S ++++A G ++ D
Sbjct: 118 WDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPELPITED 177
Query: 275 GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG---PLDRTTYMF 331
R V+ + ++ + + E P G P +
Sbjct: 178 LDDKDADVAYRE--------VLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNV 229
Query: 332 -TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRI 390
I G P + E ++Y D +D ++ + P R A+N I
Sbjct: 230 GLGIQGGMGYPSIHEYYKKYLDKYAPD----VDKSKLLVKGGALVP-TRRPLYTMAWNGI 284
Query: 391 LQFGDASGIQSPVSFGG 407
+ GD+ +PV GG
Sbjct: 285 IVIGDSGFTVNPVHGGG 301
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 60/349 (17%), Positives = 106/349 (30%), Gaps = 63/349 (18%)
Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISR--KELLELVESG 164
FD+IV G G G +A+ ++ +G RV ++ER R Q E + + +
Sbjct: 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAF-PRHQIGESLLPATVHGICAM---- 61
Query: 165 ILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSP---------AKLIEIVKKRF 215
+ + D++ A + + E W P A+ +++ +
Sbjct: 62 LGLTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNS 121
Query: 216 ISLGGVIFEGYSVSSICTYENAAVLLLAEGK-----ILSSHLIIDAMGNFSPVVKQIRSG 270
G + E + V + AV + + + I+DA GN + V + +
Sbjct: 122 ERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGER 181
Query: 271 RKPDGVCLVVGSCARG-FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG---PLDR 326
G F++ + + AF G PL
Sbjct: 182 VYSRF---FQNVALYGYFENGKRLP-----------APRQGNILSAAFQDGWFWYIPLSD 227
Query: 327 TTYMFTYIDPQAGSPK----LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP 382
T + + + E L RY D P + + YG +D
Sbjct: 228 TLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAPATRVTTGDYGEIRIRKDYS 287
Query: 383 L---PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG 428
N + GDA+ PV S+GV+ A
Sbjct: 288 YCNTSFWKNGMALVGDAACFVDPVF--------------SSGVHLATYS 322
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 47/345 (13%), Positives = 93/345 (26%), Gaps = 63/345 (18%)
Query: 111 FDVIVCGG-----TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKE--------- 156
DV+V G A+ ++ G +V IVE+ R
Sbjct: 6 VDVLVIGAGPAGTVA----ASLVNKSGFKVKIVEKQKF---------PRFVIGESLLPRC 52
Query: 157 LLELVESGILVEDDIDEATATKFNPNR-CGFEGKGEIWVEDILNLGVSPAKLI------E 209
+ L E+G L D + + + + + D + G + + +
Sbjct: 53 MEHLDEAGFL--DAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDK 110
Query: 210 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA----EGKILSSHLIIDAMGNFSPVVK 265
+ G + V+ I + +V + + + + IIDA G + +
Sbjct: 111 TLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPR 170
Query: 266 QIRSGRKPDGVCLVVGSCA--RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGP 323
KP G + K ++ + + V W P +G
Sbjct: 171 MFGL-DKPSGFESRRTLFTHIKDVKRPVAAE--MEGNRITAVVHKPKVWIW-VIPFSNG- 225
Query: 324 LDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL 383
++ + EE + + E I Y S
Sbjct: 226 NTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAER-FKSEEFLFEPRTIEG-YAISAS 283
Query: 384 PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG 428
+ + G+A+ P+ S+G A+
Sbjct: 284 KLYGDGFVLTGNATEFLDPIF--------------SSGATFAMES 314
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 100.0 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 99.97 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 99.97 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 99.97 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 99.97 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 99.97 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 99.96 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 99.96 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 99.95 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 99.95 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 99.95 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 99.95 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 99.95 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 99.95 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 99.94 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 99.94 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 99.94 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 99.94 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 99.93 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 99.93 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 99.91 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 99.91 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 99.9 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 99.9 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 99.89 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 99.89 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 99.85 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 99.76 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 99.68 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 99.68 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 99.53 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 99.46 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 99.43 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 99.41 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 99.39 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 99.34 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 99.3 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 99.27 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 99.27 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.26 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.26 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 99.24 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 99.2 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 99.17 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.16 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 99.15 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.14 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 99.13 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 99.11 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.1 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.1 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 99.04 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 99.01 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 99.01 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.0 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.98 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.97 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 98.96 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.96 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.95 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.93 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.92 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.92 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.9 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.9 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.89 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.85 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.83 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.82 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.81 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.8 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.79 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.78 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 98.78 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.77 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.77 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.76 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 98.75 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.75 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 98.74 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.73 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.73 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.71 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.71 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.71 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.7 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.7 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.66 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.65 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 98.64 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 98.64 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 98.64 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.63 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.63 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 98.62 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.61 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.6 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 98.57 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 98.51 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.51 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.51 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.5 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.49 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 98.46 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.4 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.38 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 98.38 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.37 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.32 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 98.31 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 98.29 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.29 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.28 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.2 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 98.18 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.15 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 98.14 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.13 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.1 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.06 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.03 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 98.03 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.99 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.99 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.99 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.98 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.98 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 97.96 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 97.96 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 97.93 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.89 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 97.88 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.87 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 97.85 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 97.84 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 97.83 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 97.82 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.82 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 97.82 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.81 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 97.81 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.79 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.79 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 97.79 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 97.78 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 97.78 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.76 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.74 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 97.72 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 97.72 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 97.71 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 97.71 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 97.7 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 97.69 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 97.69 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 97.68 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 97.68 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.65 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 97.64 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 97.63 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 97.63 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.62 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.61 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.61 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 97.61 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 97.61 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 97.6 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.57 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.56 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 97.56 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 97.55 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 97.54 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 97.53 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 97.52 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 97.51 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 97.5 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 97.5 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.47 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 97.46 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 97.45 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 97.44 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 97.42 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 97.42 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.41 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.4 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 97.38 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.36 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.36 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 97.34 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 97.33 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 97.31 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 97.31 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 97.31 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.31 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.3 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.3 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.3 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 97.28 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.27 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 97.27 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.26 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.25 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.24 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 97.24 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 97.23 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 97.19 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.17 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.16 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.13 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.12 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.12 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 97.11 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.08 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 97.08 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 97.07 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.07 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.05 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.04 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.04 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 97.02 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 96.98 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 96.95 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 96.93 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 96.93 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 96.91 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 96.91 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 96.9 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 96.88 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 96.87 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 96.87 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 96.86 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 96.85 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 96.85 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 96.79 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.79 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 96.74 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 96.72 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 96.7 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 96.69 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 96.69 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 96.67 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 96.67 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 96.64 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 96.6 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 96.59 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 96.56 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.55 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 96.54 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 96.54 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 96.51 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 96.4 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 96.38 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 96.35 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.28 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.28 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 96.27 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.23 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 96.22 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 96.21 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 96.2 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 96.15 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 96.14 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.13 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 96.12 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 96.01 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 95.96 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 95.95 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 95.93 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 95.91 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 95.91 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 95.85 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 95.84 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 95.66 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 95.61 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 95.21 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 95.18 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 95.16 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 95.15 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 95.11 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 95.07 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 95.05 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 94.76 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 94.31 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 94.28 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 93.78 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 93.31 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 93.3 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 92.67 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 92.26 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 92.24 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 91.98 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 91.96 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 91.59 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 91.29 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 91.01 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 90.77 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 90.39 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 90.04 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 89.97 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 89.94 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 89.49 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 88.98 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 88.74 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 88.4 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 88.38 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 87.98 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 87.86 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 87.21 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 87.04 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 86.72 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 86.55 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 86.18 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 85.93 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 85.77 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 85.7 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 85.66 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 85.37 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 84.36 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 83.83 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 83.82 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 83.67 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 83.41 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 83.19 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 83.13 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 82.66 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 82.52 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 82.42 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 82.09 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 82.0 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 81.98 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 81.85 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 81.8 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 81.64 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 81.58 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 81.46 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 81.4 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 81.32 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 81.29 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 81.25 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 81.23 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 81.11 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 81.01 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 80.59 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 80.56 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 80.54 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 80.49 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 80.45 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 80.43 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 80.4 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 80.38 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 80.33 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 80.26 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 80.24 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 80.22 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 80.13 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 80.12 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 80.05 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 80.03 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 80.01 |
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=291.28 Aligned_cols=310 Identities=16% Similarity=0.176 Sum_probs=205.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-c-cccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-Q-EWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r-~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+||||||||| +|+++|+.||++|++|+||||++.++.+ + ...|++. .|.++|+..... .+..+....++..
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~---~l~~l~~~~~~~---~~~~~~~~~~~~~ 77 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKG---ILNEADIKADRS---FIANEVKGARIYG 77 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETH---HHHHTTCCCCTT---TEEEEESEEEEEC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHH---HHHHcCCCchhh---hhhcccceEEEEe
Confidence 5999999965 6999999999999999999998766543 2 3456665 466677754321 1111111111111
Q ss_pred cCC-ccc-----cccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE--cCCc--EEEcCEEEEc
Q 008915 187 EGK-GEI-----WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEGK--ILSSHLIIDA 256 (549)
Q Consensus 187 ~~~-~~l-----~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~dG~--~i~ArlVI~A 256 (549)
... ..+ ......++.+++..|++.|.+++.+.|++++.+++++++..+++.++... .+++ +++|++||+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgA 157 (397)
T 3oz2_A 78 PSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAA 157 (397)
T ss_dssp TTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeC
Confidence 110 000 11123457899999999999999999999999999999999888765332 2333 7999999999
Q ss_pred cCCChHHHHHhcCCCC---CCceeeEEeEeeeccC-CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEE
Q 008915 257 MGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (549)
Q Consensus 257 DG~~S~vrrql~~~~~---~~~~~~~vg~~~~g~~-~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~ 332 (549)
||.+|.++++++.... +..............+ +.+..++++. ... ..+++| .||.+++. ....+..
T Consensus 158 dG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~g~~~-~~~~~~~~--~~vg~~~ 227 (397)
T 3oz2_A 158 DGFESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLG--SIA-----PAGYIW-VFPKGEGM--ANVGIGS 227 (397)
T ss_dssp CCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCCTTEEEEECS--TTS-----TTEEEE-EEEEETTE--EEEEEEE
T ss_pred CccccHHHHHcCCCcccccceeeeeeEEEEeeccccCcccceeeee--ccC-----CCceEE-Eeecccce--eEEEEee
Confidence 9999999999876532 2222221111111111 2233343332 222 257888 78887651 2233333
Q ss_pred ccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHH
Q 008915 333 YIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT 412 (549)
Q Consensus 333 ~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~l 412 (549)
..+......++.++++++.+..|.+... +..+...+.+|... ...++..+|++|+|||||+++|++|+|++.++
T Consensus 228 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~-----~~~~~~~~~~~~~~-~~~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A~ 301 (397)
T 3oz2_A 228 SINWIHNRFELKNYLDRFIENHPGLKKG-----QDIQLVTGGVSVSK-VKMPITMPGLMLVGDAARLIDPITGGGIANAI 301 (397)
T ss_dssp ETTTSCSHHHHHHHHHHHHHTCHHHHTS-----EEEEEEEEEEECCC-CCSCCEETTEEECGGGGTCSCTTTCCCHHHHH
T ss_pred ccchhhhhhhHHHHHHHHHHhCcccccc-----ceeeeeeccccccC-cccceeeeeEEEcccccccCCCCcchhHHHHH
Confidence 3322223336788888888877765442 22233345566543 33467789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 413 rd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
.|+..||+.|.++++.++.+...| +.|++
T Consensus 302 ~~g~~~A~~i~~~l~~~~~~~~~L---~~Ye~ 330 (397)
T 3oz2_A 302 VSGMYAAQVTKEAIESNDYSPQMM---QKYEK 330 (397)
T ss_dssp HHHHHHHHHHHHHHHHTCCSHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccHHHH---HHHHH
Confidence 999999999999999988766554 67874
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=286.99 Aligned_cols=315 Identities=18% Similarity=0.105 Sum_probs=199.0
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-CCccccCCHHHHHHHHHcCCCCcccchhhhh-hc-cCCCc-
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATA-TK-FNPNR- 183 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~-~~-~~~~~- 183 (549)
.+||||||||| +|+++|+.|+++|++|+||||.+.+. ..+...|++.+++.|.++|+++...-..... .. +....
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 127 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFT 127 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccc
Confidence 36999999975 59999999999999999999998765 3456789999999999999875321000000 00 11000
Q ss_pred ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE--cCC-cEEEcCEEEEccCCC
Q 008915 184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEG-KILSSHLIIDAMGNF 260 (549)
Q Consensus 184 i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~dG-~~i~ArlVI~ADG~~ 260 (549)
..+. ...+..+....+.+++..|.+.|.+++.+.|++++.+++|++++.++++++|++ .+| ++++||+||+|||.+
T Consensus 128 ~~~~-~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~ 206 (570)
T 3fmw_A 128 QGLD-FGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGR 206 (570)
T ss_dssp TCCB-GGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSS
T ss_pred cccc-ccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCC
Confidence 0111 011111223356799999999999999988999999999999999999999888 577 689999999999999
Q ss_pred hHHHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccc-eEEEEEccCC
Q 008915 261 SPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR-TTYMFTYIDP 336 (549)
Q Consensus 261 S~vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~-~~~l~~~~~~ 336 (549)
|.+|+++++..+ +...+.+... ..+... ... .. ... ..+++|..+|..++. . ..++......
T Consensus 207 S~vR~~lGi~~~~~~~~~~~~~~~v---~~~~~~-~~~--~~-~~~-----~~G~~~~~~P~~~g~--~~~i~~~~~~~~ 272 (570)
T 3fmw_A 207 STVRRLAADRFPGTEATVRALIGYV---TTPERE-VPR--RW-ERT-----PDGILVLAFPPEGGL--GPGWSSSSTGHS 272 (570)
T ss_dssp CHHHHHTTCCCCCCCCCEEEEEEEC---CCCSCS-SCC--CC-CCC-----CSSCEEECCCC--------CEEEEEESCC
T ss_pred chHHHHcCCCCccceeeeEEEEEEE---EecCCC-cce--EE-Eec-----CCEEEEEEeecCCCe--EEEEEEEeCCCC
Confidence 999999987643 2222221111 011111 000 00 011 235666337887652 2 2222222211
Q ss_pred CC---CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHH
Q 008915 337 QA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTR 413 (549)
Q Consensus 337 ~~---~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lr 413 (549)
.. ...+.+++.+.+.+.++.. +...+... ....+|.......++..+|++|+|||||.++|++|||+|++++
T Consensus 273 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~-~~~~~~~~~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~ 347 (570)
T 3fmw_A 273 PAADEGPVTLEDLGAAVARVRGTP----LTLTEPVS-WLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQ 347 (570)
T ss_dssp -----CCCCHHHHHHHTTSSSSCC----CCCCSCCE-EEEEECCCCEECSCSEETTEEECGGGTEECCCCSSCHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHhhcc----cccceeee-eeEEeecccccccccccCCEEEEEecceecCCCcCcCHhHHHH
Confidence 11 1225555555444333321 11111110 1124565554556788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 414 HLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 414 d~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
|+..|++.|..+++... ....|+.|++...
T Consensus 348 DA~~La~~La~~~~g~~----~~~lL~~Ye~eR~ 377 (570)
T 3fmw_A 348 DAVNLGWKLAARVRGWG----SEELLDTYHDERH 377 (570)
T ss_dssp HHHHHHHHHHHHHHSCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC----cHHHHHHHHHHHH
Confidence 99999999999886422 2345789995443
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=265.24 Aligned_cols=340 Identities=15% Similarity=0.073 Sum_probs=205.8
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.+||||||||| +|+++|+.|+++|++|+|+||.+.++. .+.+.+++..+..|.++|+++. +.. .......+.+
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~--~~~---~~~~~~~~~~ 96 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDI--MET---FGGPLRRMAY 96 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHH--HHH---HSCCCCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHH--HHh---hcCCCcceEE
Confidence 36999999976 599999999999999999999987653 3556799999999999998743 111 1111111111
Q ss_pred cC---Ccc---cccc------ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 187 EG---KGE---IWVE------DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 187 ~~---~~~---l~~~------~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
.. +.. +... ....+.+++..|.+.|.+++.+ ++++.+++|+++..++++++|++++|++++|++||
T Consensus 97 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV 174 (407)
T 3rp8_A 97 RDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLI 174 (407)
T ss_dssp EETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEE
T ss_pred EECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEE
Confidence 11 010 0000 1235679999999999999976 88999999999999999999999999999999999
Q ss_pred EccCCChHHHHHh-cCCCCCCc--eeeEEeEee-e-ccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 255 DAMGNFSPVVKQI-RSGRKPDG--VCLVVGSCA-R-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 255 ~ADG~~S~vrrql-~~~~~~~~--~~~~vg~~~-~-g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
+|||.+|.+|+++ +....+.. .....+... . ..+.......+. . ..+++| .+|..++ ...+
T Consensus 175 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~-~~p~~~~---~~~~ 240 (407)
T 3rp8_A 175 AADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFV-----G-----EGKQVS-LMPVSAG---RFYF 240 (407)
T ss_dssp ECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEEEE-----E-----TTEEEE-EEEETTT---EEEE
T ss_pred ECCCcChHHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEEEE-----C-----CCcEEE-EEEcCCC---eEEE
Confidence 9999999999998 54322221 111111111 0 011111111111 1 235666 7888765 3333
Q ss_pred EEEccCCC--C-CcccH-HHHHHHHHHhCcccccc--cCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCC
Q 008915 330 MFTYIDPQ--A-GSPKL-EELLERYWDLMPEYQGV--TLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV 403 (549)
Q Consensus 330 l~~~~~~~--~-~~~~L-~~l~~~~~~~lp~~~~~--~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pl 403 (549)
.+...... . ..... +.+.+.|....|.+... ........ ....+|.... .++..+|++|||||||.++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~rv~LvGDAAh~~~P~ 316 (407)
T 3rp8_A 241 FFDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTN--RIEIHDIEPF--SRLVRGRVALLGDAGHSTTPD 316 (407)
T ss_dssp EEEEECCTTCSCCTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCE--EEEEEECCCC--SCCEETTEEECGGGTCCCCGG
T ss_pred EEEeCCCcCCCCCchhHHHHHHHHhcCCChHHHHHHHcCCcccee--EEeeEecCCC--CceecCCEEEEEcccccCCcc
Confidence 33332111 1 11122 23332222222322221 00111111 1123343321 466789999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCcccchhHhhhhhceeecchhHHHHHHHHhhCCCcHHH
Q 008915 404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQVLLDVIKFGPLAKTLGLVMLNKPQIIPS 483 (549)
Q Consensus 404 tg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~P~ll~~ 483 (549)
+|||+|.+++|+..|++.|.. .+ .....|+.|++........+.+ +++.. ..++..+.....
T Consensus 317 ~GqG~~~al~da~~La~~L~~---~~----~~~~~l~~Y~~~r~~~~~~~~~-------~s~~~----~~~~~~~~~~~~ 378 (407)
T 3rp8_A 317 IGQGGCAAMEDAVVLGAVFRQ---TR----DIAAALREYEAQRCDRVRDLVL-------KARKR----CDITHGKDMQLT 378 (407)
T ss_dssp GSCHHHHHHHHHHHHHHHHHS---CC----CHHHHHHHHHHHHHHHHHHHHH-------HHHHH----HHHHTTTTHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhc---CC----CHHHHHHHHHHHHHHHHHHHHH-------HHHHh----hhhhhcCCHHHH
Confidence 999999999999999888763 22 2345578999544333222222 22211 345566666666
Q ss_pred HHhhcChh
Q 008915 484 IFKQVGIP 491 (549)
Q Consensus 484 ~~~~~g~~ 491 (549)
..|+.++.
T Consensus 379 ~~R~~~l~ 386 (407)
T 3rp8_A 379 EAWYQELR 386 (407)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665554
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=268.79 Aligned_cols=309 Identities=16% Similarity=0.134 Sum_probs=198.2
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhc-cCCCccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATK-FNPNRCG 185 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~-~~~~~i~ 185 (549)
.+|||+||||| +|+++|+.|+++|++|+||||.+.+.. .+...+++.+++.|.++|++++. ....... .....+.
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~--~~~~~~~~~~~~~~~ 87 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRF--GEVETSTQGHFGGLP 87 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGG--CSCCBCCEEEETTEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHH--Hhcccccccccccee
Confidence 47999999965 699999999999999999999887653 45678999999999999997542 1110000 0000011
Q ss_pred ccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc---EEEcCEEEEccCCChH
Q 008915 186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK---ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 186 f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~---~i~ArlVI~ADG~~S~ 262 (549)
+.. ..+..+....+.+++..|.+.|.+++.+.|++++.+++|++++.++++++|++.++. +++||+||+|||.+|.
T Consensus 88 ~~~-~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~ 166 (500)
T 2qa1_A 88 IDF-GVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSS 166 (500)
T ss_dssp EEG-GGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCH
T ss_pred ccc-ccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchH
Confidence 110 011111223467899999999999999999999999999999999999999887664 7999999999999999
Q ss_pred HHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEE-ccCCCC
Q 008915 263 VVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT-YIDPQA 338 (549)
Q Consensus 263 vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~-~~~~~~ 338 (549)
||+++++..+ +...+..........++ .+.+. .. ..+++| .+|..++ ...+.+. ......
T Consensus 167 VR~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~-----~~g~~~-~~p~~~g---~~~~~~~~~~~~~~ 230 (500)
T 2qa1_A 167 VRKAAGFDFPGTAATMEMYLADIKGVELQP----RMIGE---TL-----PGGMVM-VGPLPGG---ITRIIVCERGTPPQ 230 (500)
T ss_dssp HHHHTTCCCCEECCCCEEEEEEEESCCCCC----EEEEE---EE-----TTEEEE-EEEETTT---EEEEEEEETTCCC-
T ss_pred HHHHcCCCcCCCccceEEEEEEEEeCCCCC----ceEEE---EC-----CCcEEE-EEEcCCC---EEEEEEEcCCCCCc
Confidence 9999976543 22222221111111111 11111 11 135666 7888765 2222222 222111
Q ss_pred ---CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHH
Q 008915 339 ---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHL 415 (549)
Q Consensus 339 ---~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~ 415 (549)
...+.+++.+.+.+.++. .....+..+. ..++.......++..+||+|+|||||.++|++|||+|.+++|+
T Consensus 231 ~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~----~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA 304 (500)
T 2qa1_A 231 RRETPPSWHEVADAWKRLTGD--DIAHAEPVWV----SAFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDA 304 (500)
T ss_dssp ----CCCHHHHHHHHHHHHSC--CCTTSEEEEE----EEEECCEEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhcCC--CCCccceeEE----EEeccCcEEccccccCCEEEEEccccCCCCccccchhhhHHHH
Confidence 112444444444333331 1111122221 1233333334567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 416 GRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 416 ~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
..|+..|...++.. + ....|..|++.+
T Consensus 305 ~~La~~La~~~~g~--~--~~~~L~~Y~~eR 331 (500)
T 2qa1_A 305 VNLGWKLGAVVNGT--A--TEELLDSYHSER 331 (500)
T ss_dssp HHHHHHHHHHHTTS--S--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--C--ChHHHHHHHHHH
Confidence 99999999888532 1 234578999543
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=269.06 Aligned_cols=310 Identities=15% Similarity=0.165 Sum_probs=199.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhc-cCCCccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATK-FNPNRCG 185 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~-~~~~~i~ 185 (549)
.++||+||||| +|+++|+.|+++|++|+||||.+.+.. .+...+++.+++.|.++|++++.. ...... .......
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~--~~~~~~~~~~~~~~ 88 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFG--PVETSTQGHFGGRP 88 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGC--SCCEESEEEETTEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHH--hccccccceeccee
Confidence 37999999965 699999999999999999999887653 456789999999999999975421 110000 0000011
Q ss_pred ccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc---EEEcCEEEEccCCChH
Q 008915 186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK---ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 186 f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~---~i~ArlVI~ADG~~S~ 262 (549)
+.. ..+..+....+.+++..|.+.|.+++.+.|++++.+++|++++.++++++|++.++. +++||+||+|||.+|.
T Consensus 89 ~~~-~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~ 167 (499)
T 2qa2_A 89 VDF-GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST 167 (499)
T ss_dssp EEG-GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred ccc-ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence 110 011111223467899999999999999999999999999999999999999987764 8999999999999999
Q ss_pred HHHHhcCCCC---CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCC-
Q 008915 263 VVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA- 338 (549)
Q Consensus 263 vrrql~~~~~---~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~- 338 (549)
||+++++..+ +...+..........+ . .+... .. ..+++| .+|..++. ...++........
T Consensus 168 VR~~lg~~~~~~~~~~~~~~~~v~~~~~~--~--~~~~~---~~-----~~g~~~-~~P~~~g~--~~~~~~~~~~~~~~ 232 (499)
T 2qa2_A 168 VRKAAGFDFPGTSASREMFLADIRGCEIT--P--RPIGE---TV-----PLGMVM-SAPLGDGV--DRIIVCERGAPARR 232 (499)
T ss_dssp HHHHTTCCCCEECCCCCEEEEEEESCCCC--C--EEEEE---EE-----TTEEEE-EEECSSSC--EEEEEEETTCCCCC
T ss_pred HHHHcCCCCCCCCCccEEEEEEEEECCCC--c--ceEEE---EC-----CCeEEE-EEEcCCCE--EEEEEEecCCCCcc
Confidence 9999976542 2222222111111111 1 11111 11 135666 78987652 2223222222111
Q ss_pred --CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHH
Q 008915 339 --GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLG 416 (549)
Q Consensus 339 --~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~ 416 (549)
...+.+++.+.+.+.++. .....+..+. ..++.......++..+||+|+|||||.++|++|||+|++++|+.
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~----~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~ 306 (499)
T 2qa2_A 233 RTGPPPYQEVAAAWQRLTGQ--DISHGEPVWV----SAFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSV 306 (499)
T ss_dssp CSSSCCHHHHHHHHHHHHSC--CCTTCEEEEE----EEECCCEEECSCSEETTEEECGGGTEEECCCSSCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhCC--CCCccceeEE----EEEeCCcEEcccccCCCEEEEecccccCCCccccchhhhHHHHH
Confidence 112445544444333331 1111122211 22344333345677899999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 417 RLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 417 ~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
.|+..|...++... ....|..|++.+
T Consensus 307 ~La~~La~~l~g~~----~~~~L~~Ye~eR 332 (499)
T 2qa2_A 307 NLGWKLAAVVSGRA----PAGLLDTYHEER 332 (499)
T ss_dssp HHHHHHHHHHTTSS----CTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC----ChHHHHHHHHHH
Confidence 99999998886321 234578999543
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=258.52 Aligned_cols=306 Identities=17% Similarity=0.180 Sum_probs=192.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC--CC-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG--RE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~--~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
+||||||||| +|+++|+.|+++|++|+||||.+.++ .. ....+ ....|.++|++... ...+...... +.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l---~~~~l~~lg~~~~~--~~~~~~~~~~--~~ 78 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV---SKAHFDKLGMPYPK--GEELENKING--IK 78 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEE---EHHHHHHTTCCCCC--GGGEEEEEEE--EE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccc---cHHHHHHhcCCCCc--hHHHHhhhcc--eE
Confidence 5999999975 59999999999999999999988642 11 22334 34567888886532 1111111100 11
Q ss_pred ccC-C--ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CCc--EEEcCEEEEc
Q 008915 186 FEG-K--GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDA 256 (549)
Q Consensus 186 f~~-~--~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG~--~i~ArlVI~A 256 (549)
+.. . ..+..+ ..++.+++..|++.|.+++.+.|++++.+++|+++..++++++ |++. +|+ +++||+||+|
T Consensus 79 ~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~A 157 (453)
T 3atr_A 79 LYSPDMQTVWTVN-GEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEA 157 (453)
T ss_dssp EECTTSSCEEEEE-EEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEEC
T ss_pred EECCCCceEEeEC-CCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEEC
Confidence 111 0 111111 1246799999999999999999999999999999998888765 5553 665 8999999999
Q ss_pred cCCChHHHHHhcCCCC------CCceeeEEeEeee---ccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccce
Q 008915 257 MGNFSPVVKQIRSGRK------PDGVCLVVGSCAR---GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT 327 (549)
Q Consensus 257 DG~~S~vrrql~~~~~------~~~~~~~vg~~~~---g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~ 327 (549)
||.+|.++++++...+ +............ ...+.....+++.. +.. ..+|+| .||..++ ..
T Consensus 158 dG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~g~~~-~~P~~~~---~~ 227 (453)
T 3atr_A 158 TGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQ-ETS-----PGGYWW-YFPKGKN---KV 227 (453)
T ss_dssp CGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCTTTTEEEEECCT-TTS-----TTSCEE-EEEEETT---EE
T ss_pred cCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCccCCCeEEEEECC-CCC-----CCcEEE-EEECCCC---eE
Confidence 9999999998875431 1122221211111 11111222333221 111 246888 7998765 22
Q ss_pred EEEEEccCCCCCcccHHHHHHHHHHh-CcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 328 TYMFTYIDPQAGSPKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 328 ~~l~~~~~~~~~~~~L~~l~~~~~~~-lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
.+.+.+.... ...+..+.+.++++. .|.+.. .++.+...+.+|... ...++..+|++|||||||.++|++|+
T Consensus 228 ~vg~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~p~~~-~~~~~~~~~v~lvGDAAh~~~P~~G~ 300 (453)
T 3atr_A 228 NVGLGIQGGM-GYPSIHEYYKKYLDKYAPDVDK-----SKLLVKGGALVPTRR-PLYTMAWNGIIVIGDSGFTVNPVHGG 300 (453)
T ss_dssp EEEEEEESSS-CCCCHHHHHHHHHHHHCTTEEE-----EEEEEEEEEEEECSS-CCSCSEETTEEECGGGGTCSCTTTCC
T ss_pred EEEEEecCCC-CCCCHHHHHHHHHHhhhhhcCC-----CeEEeccceeccCCC-CCCceecCCEEEEeCcccCCCCCccc
Confidence 2222222111 112344555555533 333322 233333334566532 23456789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~ 443 (549)
|++.++.|+..|++.|.++++.++.+.. .|+.|+
T Consensus 301 G~~~Ai~da~~la~~l~~~l~~~~~~~~---~L~~Y~ 334 (453)
T 3atr_A 301 GKGSAMISGYCAAKAILSAFETGDFSAS---GLWDMN 334 (453)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCSTT---TTTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCccHH---HHHHHH
Confidence 9999999999999999999886654333 346777
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-28 Score=254.60 Aligned_cols=305 Identities=15% Similarity=0.113 Sum_probs=200.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhh-----cc--CC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT-----KF--NP 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~-----~~--~~ 181 (549)
+||||||||| +|+++|+.|+++|++|+||||.++++......+++..+..|.++|+++. +...-.. .+ ..
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~--~~~~~~~~~~~~~~~~~~ 82 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDA--VKAQGFQQKFGAKFVRGK 82 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHH--HHHTTCEEECEEEEEETT
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHH--HHHcCCcccCCcEEEeCC
Confidence 5999999976 5999999999999999999999887755556788888889999998642 1111000 00 00
Q ss_pred C--cccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE--cCCc--EEEcCEEEE
Q 008915 182 N--RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEGK--ILSSHLIID 255 (549)
Q Consensus 182 ~--~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~dG~--~i~ArlVI~ 255 (549)
. .+.|. ..........+.+++..|++.|.+.+.+.|++++.+++|+++..+++++++.+ .+|+ +++||+||+
T Consensus 83 ~~~~~~~~--~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~ 160 (421)
T 3nix_A 83 EIADFNFS--DQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIID 160 (421)
T ss_dssp EEEEEETT--SCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEE
T ss_pred eeEEEeeh--hhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEE
Confidence 0 00111 00011122346799999999999999999999999999999999888765544 5777 799999999
Q ss_pred ccCCChHHHHHhcCCCCC---CceeeEEeEeeeccCCCce--eeeeecCCcccccCCCCceeEEEEecCCCCCccceEEE
Q 008915 256 AMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNST--SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (549)
Q Consensus 256 ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~~~~~--~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l 330 (549)
|||.+|.++++++...+. ...+.... .......... ..+.+...+.. ..+|+| .+|..++ .....
T Consensus 161 A~G~~s~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~-~~P~~~~---~~~vg 230 (421)
T 3nix_A 161 ASGYGRVIPRMFGLDKPSGFESRRTLFTH-IKDVKRPVAAEMEGNRITAVVHK-----PKVWIW-VIPFSNG---NTSVG 230 (421)
T ss_dssp CCGGGCHHHHHTTCEECCSSCCCEEEEEE-EECTTCCC----CCSEEEEEEEE-----TTEEEE-EEECTTS---EEEEE
T ss_pred CCCCchhhHHhcCCCCCCcCCCcEEEEEE-ECCCcCCCccCCCCeEEEEEeCC-----CCEEEE-EEEECCC---CEEEE
Confidence 999999999988765332 12222111 1111110000 11111111111 357888 8999876 33333
Q ss_pred EEccC--CCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCch
Q 008915 331 FTYID--PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (549)
Q Consensus 331 ~~~~~--~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~ 408 (549)
+.+.. ......+.+++++++....|.+... +...+...+ ...+|.+.....++..+|+++||||||+++|++|+|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~-l~~~~~~~~-~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~G~G~ 308 (421)
T 3nix_A 231 FVGEPSYFDEYTGTPEERMRAMIANEGHIAER-FKSEEFLFE-PRTIEGYAISASKLYGDGFVLTGNATEFLDPIFSSGA 308 (421)
T ss_dssp EEECHHHHTTSCSCHHHHHHHHHHTCTTTHHH-HTTCCBSSC-CEEEECCCBEESCSEETTEEECGGGTCBCCSTTCCHH
T ss_pred EEecHHHhhhcCCCHHHHHHHHHHhCcHHHHH-HhcCccccC-ceeecccceeeeeeccCCEEEecccccccCCcccccH
Confidence 33321 1111236778888888877776543 233222211 1234444333446678999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCC
Q 008915 409 GSLTRHLGRLSTGVYEAVRGDF 430 (549)
Q Consensus 409 g~~lrd~~~La~~i~~Al~~g~ 430 (549)
+.++.++..|++.|.++++.+.
T Consensus 309 ~~A~~~a~~la~~l~~~~~~~~ 330 (421)
T 3nix_A 309 TFAMESGSKGGKLAVQFLKGEE 330 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999987664
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=250.05 Aligned_cols=313 Identities=15% Similarity=0.123 Sum_probs=187.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC---CCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~---~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
+|||+||||| +|+++|+.|+++|++|+|+||.+.+ ...+...+++..++.|.++|+++. +... ........+.
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~--~~~~-~~~~~~~~~~ 78 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRR--MARD-GLVHEGVEIA 78 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHH--HHHH-CEEESCEEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHH--HHhc-CCccceEEEE
Confidence 5899999975 5999999999999999999998752 223444688999999999999753 1111 0011111111
Q ss_pred ccCCc-ccccc----ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEEC-CEEEEEE-cCCc--EEEcCEEEEc
Q 008915 186 FEGKG-EIWVE----DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLL-AEGK--ILSSHLIIDA 256 (549)
Q Consensus 186 f~~~~-~l~~~----~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv~V~~-~dG~--~i~ArlVI~A 256 (549)
..+.. .+..+ ....+.+++..+.+.|.+++.+.|++++.+++|+++..++ +++.|++ ++|+ +++||+||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A 158 (394)
T 1k0i_A 79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC 158 (394)
T ss_dssp ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence 11000 00000 1123567888899999999988899999999999998753 4677777 6787 7999999999
Q ss_pred cCCChHHHHHhcCCCCCC--ceeeE-EeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEc
Q 008915 257 MGNFSPVVKQIRSGRKPD--GVCLV-VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY 333 (549)
Q Consensus 257 DG~~S~vrrql~~~~~~~--~~~~~-vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~ 333 (549)
||.+|.+|++++....+. ..... ........+ ....++++.. ...+++| .+|..++ ...+.+..
T Consensus 159 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~g~~~-~~~~~~~---~~~~~~~~ 225 (394)
T 1k0i_A 159 DGFHGISRQSIPAERLKVFERVYPFGWLGLLADTP-PVSHELIYAN--------HPRGFAL-CSQRSAT---RSQYYVQV 225 (394)
T ss_dssp CCTTCSTGGGSCGGGCEEEEEEEEEEEEEEEESSC-CSCSSCEEEC--------CTTCCEE-EEEEETT---EEEEEEEE
T ss_pred CCCCcHHHHhcCccccccccccccceeEEEecCCC-CCccceEEEE--------cCCceEE-EEecCCC---cEEEEEEe
Confidence 999999999886432110 11000 000000111 0001111110 0235666 4554433 23333333
Q ss_pred cCCCCC-cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHH
Q 008915 334 IDPQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT 412 (549)
Q Consensus 334 ~~~~~~-~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~l 412 (549)
...... ..+.++..+.+.+.++......+....... ...+|.......++..+|++|||||||.++|++|||+|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~ai 303 (394)
T 1k0i_A 226 PLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLE--KSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAA 303 (394)
T ss_dssp CTTCCGGGCCHHHHHHHHHHTSCHHHHHHCCCCCEEE--EEEEEEEEEEEECSEETTEEECGGGTEECCGGGTCHHHHHH
T ss_pred CCCCCccccCHHHHHHHHHHhhCcccccccccCccee--eEEEEhhhhhccccccCCEEEEechhhcCCCcccchHHHHH
Confidence 221111 112333444444444332100011101111 12334433223356779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhc
Q 008915 413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKL 445 (549)
Q Consensus 413 rd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l 445 (549)
+|+..|++.|..+++.+. ...|+.|++.
T Consensus 304 ~da~~La~~L~~~~~~~~-----~~~L~~Y~~~ 331 (394)
T 1k0i_A 304 SDVSTLYRLLLKAYREGR-----GELLERYSAI 331 (394)
T ss_dssp HHHHHHHHHHHHHHHHCC-----GGGGGGHHHH
T ss_pred HHHHHHHHHHHHHhccCc-----hHHHHHHHHH
Confidence 999999999998876542 2346899954
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-28 Score=253.04 Aligned_cols=307 Identities=15% Similarity=0.107 Sum_probs=192.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhccCC------
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNP------ 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~------ 181 (549)
++||+||||| +|+++|..|+++|++|+|+||.+.++. .+...+++..+..|.++|+++.. ... ......
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~--~~~-~~~~~~~~~~~~ 82 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEV--TRR-GGRVRHELEVYH 82 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHH--HHT-TCEEECEEEEEE
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHH--HHh-CCCcceeEEEeC
Confidence 6999999976 599999999999999999999876532 34567888999999999986431 110 000000
Q ss_pred -C--cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEE--EEEEcCCcEEEcCEEEE
Q 008915 182 -N--RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIID 255 (549)
Q Consensus 182 -~--~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv--~V~~~dG~~i~ArlVI~ 255 (549)
+ ...+.. ..+.. ...++.+++..|.+.|.+++.+. |++++.+++|+++..+++++ .|++++|++++||+||+
T Consensus 83 ~g~~~~~~~~-~~~~~-~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~ 160 (399)
T 2x3n_A 83 DGELLRYFNY-SSVDA-RGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVG 160 (399)
T ss_dssp TTEEEEEEET-TSSCG-GGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCEEEecch-HHhcc-cCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEE
Confidence 0 001110 00111 12346789999999999999988 88999999999999988888 88888888999999999
Q ss_pred ccCCChHHHHHhcCCCCCC-----c--eeeEEeEeeeccCCCceeeeeecCCcccccCCCC-ceeEEEEecCCCCCccce
Q 008915 256 AMGNFSPVVKQIRSGRKPD-----G--VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSE-VQLFWEAFPAGSGPLDRT 327 (549)
Q Consensus 256 ADG~~S~vrrql~~~~~~~-----~--~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~-~~~~W~~fP~~~g~~~~~ 327 (549)
|||.+|.++++++...+.. . .+.. +.+....+. .. ..+ . . .+++| .+|.+++ ..
T Consensus 161 AdG~~s~vr~~lg~~~~~~~p~~~~~~~~~~-~~~~~~~~~-~~--~~~--~--------~~~~~~~-~~p~~~~---~~ 222 (399)
T 2x3n_A 161 ADGIASYVRRRLLDIDVERRPYPSPMLVGTF-ALAPCVAER-NR--LYV--D--------SQGGLAY-FYPIGFD---RA 222 (399)
T ss_dssp CCCTTCHHHHHTSCCCCCCCCCSSCEEEEEE-ECCHHHHHC-EE--EEE--C--------TTSCEEE-EEEETTT---EE
T ss_pred CCCCChHHHHHhCCCccccCCCCCCceEEEE-EEecCCCCC-cc--EEE--c--------CCCcEEE-EEEcCCC---EE
Confidence 9999999999987653221 1 2211 111101111 11 111 1 1 35566 6787653 33
Q ss_pred EEEEEccCCCCC---c-ccHHHHHHHHHHhCccc--ccccCCceeEeeeeeeeecccc-CCCCCccCCcEEEeCCCCCCC
Q 008915 328 TYMFTYIDPQAG---S-PKLEELLERYWDLMPEY--QGVTLDNLEIQRVIYGIFPTYR-DSPLPAAFNRILQFGDASGIQ 400 (549)
Q Consensus 328 ~~l~~~~~~~~~---~-~~L~~l~~~~~~~lp~~--~~~~l~~~~~~r~~~g~~P~~~-~~~~~~~~~rvlLVGDAA~~v 400 (549)
.+.+.+...... . .+.+++.+.+....+.+ ..+ +... ......+|.+. ....++..+|++|||||||.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~ 298 (399)
T 2x3n_A 223 RLVVSFPREEARELMADTRGESLRRRLQRFVGDESAEAI--AAVT--GTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNV 298 (399)
T ss_dssp EEEEECCHHHHHHHHHSTTSHHHHHHHHTTCCGGGHHHH--HTCC--CSTTCEECCCCCEECSCSEETTEEECGGGTEEC
T ss_pred EEEEEeCccccccccccCCHHHHHHHHhhcCCcchhhHH--hcCC--ccceEEechhhcccccccccCcEEEEechhccC
Confidence 333322110000 0 11122222222222222 111 1110 00112455554 233466789999999999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 401 SPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 401 ~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
+|++|||+|.+++|+..|++.|..+++.+. +. ...|+.|++..
T Consensus 299 ~P~~GqG~~~al~da~~La~~L~~~~~~~~-~~--~~~l~~Y~~~r 341 (399)
T 2x3n_A 299 HPITGQGMNLAIEDASALADALDLALRDAC-AL--EDALAGYQAER 341 (399)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHTTSS-CH--HHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHHhhhcccc-hH--HHHHHHHHHHh
Confidence 999999999999999999999999887542 21 34568999543
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=253.57 Aligned_cols=313 Identities=19% Similarity=0.087 Sum_probs=192.3
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC----
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPN---- 182 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~---- 182 (549)
.++|||||||| +|+++|+.|+++|++|+||||.+.+.. .+...+++.+++.|.++|+++.. ...- ......
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~--~~~~-~~~~~~~~~~ 80 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEV--VRAD-DIRGTQGDFV 80 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHH--HHSC-CSSCTTSCCE
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHH--HhhC-CCccccccee
Confidence 36999999975 699999999999999999999986643 45667999999999999986431 1100 000000
Q ss_pred --cccccCCcccc--------------c-cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC----EEEEE
Q 008915 183 --RCGFEGKGEIW--------------V-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLL 241 (549)
Q Consensus 183 --~i~f~~~~~l~--------------~-~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~ 241 (549)
.+....+..+. . .....+.+++..|.+.|.+++.+.|++++.+++|+++..+++ +++++
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~ 160 (535)
T 3ihg_A 81 IRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTAR 160 (535)
T ss_dssp EEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEE
T ss_pred eeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEE
Confidence 00000000000 0 011245689999999999999999999999999999999998 99998
Q ss_pred EcCC---cEEEcCEEEEccCCChHHHHHhcCCCCCCce-eeEEeEeee-ccCC---CceeeeeecCCcccccCCCCceeE
Q 008915 242 LAEG---KILSSHLIIDAMGNFSPVVKQIRSGRKPDGV-CLVVGSCAR-GFKD---NSTSDVIYSSSSVKKVGDSEVQLF 313 (549)
Q Consensus 242 ~~dG---~~i~ArlVI~ADG~~S~vrrql~~~~~~~~~-~~~vg~~~~-g~~~---~~~~ei~~~~~~~~~~~~~~~~~~ 313 (549)
+.++ .+++||+||+|||.+|.+|++++++.+.... ...+..... .++. ......++.. . ..+..
T Consensus 161 ~~~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----p~~~~ 232 (535)
T 3ihg_A 161 LAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLH---H-----PEFKG 232 (535)
T ss_dssp EEETTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEECCGGGTSCTTCCEEEEEE---C-----SSCEE
T ss_pred EEcCCCeEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEeccChhhccCCceEEEEEE---C-----CCceE
Confidence 8775 6899999999999999999999765421111 001111111 1110 0000000000 0 11223
Q ss_pred EEEecCCCCCccceEEEEEccCCCCC-c--ccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcE
Q 008915 314 WEAFPAGSGPLDRTTYMFTYIDPQAG-S--PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRI 390 (549)
Q Consensus 314 W~~fP~~~g~~~~~~~l~~~~~~~~~-~--~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rv 390 (549)
| .+|..++ ....+.+.+...... . .+.+++.+.+.+.++.. . ...++.. ...++.......++..+|+
T Consensus 233 ~-~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~-~---~~~~~~~--~~~~~~~~~~a~~~~~grv 303 (535)
T 3ihg_A 233 T-FGPTDRP--DRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAP-E---VKPELVD--IQGWEMAARIAERWREGRV 303 (535)
T ss_dssp E-EEECSST--TEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTCS-S---CCCEEEE--EEEEEEEEEEESCSEETTE
T ss_pred E-EEEecCC--CEEEEEEeeCccccCccccCCHHHHHHHHHHHhCCC-C---CceeEEE--eeEeeeeEEEECccccCCE
Confidence 3 3565532 133333333321111 1 12233333222222210 0 1112221 1234444334456778999
Q ss_pred EEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhc
Q 008915 391 LQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKL 445 (549)
Q Consensus 391 lLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l 445 (549)
+|+|||||.++|++|||+|.++.|+..|++.|..+++... . ...|..|++.
T Consensus 304 ~LvGDAAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~~-~---~~lL~~Ye~e 354 (535)
T 3ihg_A 304 FLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQA-G---AGLLDTYEDE 354 (535)
T ss_dssp EECTTTTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTSS-C---TTHHHHHHHH
T ss_pred EEEecccccCCCccCCccccccccHHHHHHHHHHHhcCCC-c---HHHHHhhHHH
Confidence 9999999999999999999999999999999999886432 2 2446889943
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=256.18 Aligned_cols=319 Identities=18% Similarity=0.173 Sum_probs=195.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHH-HHHHcCCCCcccchhhhh-----hccCC-
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELL-ELVESGILVEDDIDEATA-----TKFNP- 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~-~L~~lGl~~~~eie~~i~-----~~~~~- 181 (549)
+||||||||| +|+++|+.|+++|++|+||||.+.++......+.+.... .+..+|+++...-..... ..+..
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 86 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKE 86 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCC
Confidence 5999999976 599999999999999999999987765544456666554 778888864211000000 00000
Q ss_pred -C--cccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE---EEEEcCCc--EEEcCEE
Q 008915 182 -N--RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA---VLLLAEGK--ILSSHLI 253 (549)
Q Consensus 182 -~--~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv---~V~~~dG~--~i~ArlV 253 (549)
. .+.|... . ......++.+++..|.+.|.+++.+.|++++.+++|+++..+++.+ ++...+|+ +++||+|
T Consensus 87 ~~~~~~~~~~~-~-~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~V 164 (512)
T 3e1t_A 87 PEPWTFGFTRH-P-DDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFI 164 (512)
T ss_dssp SSCEEEESSSS-S-SSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccccccccccC-C-CCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEE
Confidence 0 0111100 0 1112235679999999999999999999999999999999988854 44444574 8999999
Q ss_pred EEccCCChHHHHHhcCCCC---CCceeeEEeEeee--ccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceE
Q 008915 254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCAR--GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~~--g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~ 328 (549)
|+|||.+|.++++++.... +...+. .+.... ..+.......+.. .. ..+++| .+|..++ ...
T Consensus 165 I~AdG~~S~vr~~lg~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~---~~-----~~G~~~-~~Pl~~~---~~~ 231 (512)
T 3e1t_A 165 VDASGNRTRVSQAVGERVYSRFFQNVAL-YGYFENGKRLPAPRQGNILSA---AF-----QDGWFW-YIPLSDT---LTS 231 (512)
T ss_dssp EECCCTTCSSGGGTCCEEECSTTCEEEE-EEEEESCCCCSTTCTTSEEEE---EE-----TTEEEE-EEECSSS---EEE
T ss_pred EECCCcchHHHHHcCCCccCchhcceEE-EEEecCCccCCCCCcCceEEE---Ee-----CCceEE-EEEeCCC---eEE
Confidence 9999999999999854321 112221 111110 1111111111110 01 247888 7999865 333
Q ss_pred EEEEccC--CCCCcccHHHHHHHHHHhCcccccccCCceeEe-eeeeeeec---cccCCCCCccCCcEEEeCCCCCCCCC
Q 008915 329 YMFTYID--PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQ-RVIYGIFP---TYRDSPLPAAFNRILQFGDASGIQSP 402 (549)
Q Consensus 329 ~l~~~~~--~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~-r~~~g~~P---~~~~~~~~~~~~rvlLVGDAA~~v~P 402 (549)
..+.+.. ........++.++++.+..|.+... +...... ....+.++ .+.....++..+|+++||||||+++|
T Consensus 232 vg~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~-l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~vvlvGDAAh~~~P 310 (512)
T 3e1t_A 232 VGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEY-LAPATRVTTGDYGEIRIRKDYSYCNTSFWKNGMALVGDAACFVDP 310 (512)
T ss_dssp EEEEEEHHHHTTTSSCHHHHHHHHHHTSHHHHHH-HTTCEECCSSTTSSCEEEESCCEEESCSBCSSEEECGGGTEECCS
T ss_pred EEEEecHHHhhhhcCCHHHHHHHHHHhCchHHHH-HhcCccccccccccceeeccccccccccccCCEEEEechhhcCCC
Confidence 3333321 1111124567777777766655432 1221110 00011111 11112235677999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 403 ltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
++|+|++.+++|+..|++.|..+++.+. +. -..|+.|++...
T Consensus 311 ~~GqG~~~Al~dA~~La~~L~~~l~~~~-~~--~~aL~~Ye~~~~ 352 (512)
T 3e1t_A 311 VFSSGVHLATYSALLVARAINTCLAGEM-SE--QRCFEEFERRYR 352 (512)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTTTCS-CH--HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHcCCc-cH--HHHHHHHHHHHH
Confidence 9999999999999999999998876432 22 234678985443
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-26 Score=256.48 Aligned_cols=308 Identities=14% Similarity=0.138 Sum_probs=190.9
Q ss_pred cccEEEEcch-HHHHHHHHHHh-----CCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSF-----KGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPN 182 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr-----~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~ 182 (549)
++||+||||| +|+++|+.|++ .|++|+||||.+.+.. .+...|++.+++.|+++|++++. .. ......
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l--~~---~~~~~~ 82 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKI--LS---EANDMS 82 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHH--HT---TCBCCC
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHH--HH---hccccc
Confidence 6999999965 69999999999 9999999999876543 35678999999999999987531 11 001011
Q ss_pred cccccC---Cccc-----------cccccccceeCHHHHHHHHHHHHHhcC---CEEEeCceEEEEEEEC--------CE
Q 008915 183 RCGFEG---KGEI-----------WVEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTYE--------NA 237 (549)
Q Consensus 183 ~i~f~~---~~~l-----------~~~~~l~~~V~~~~L~~~L~~~a~~~G---~~v~~~t~v~~i~~~~--------dg 237 (549)
.+.|+. ...+ .......+.+++..|.+.|.+++.+.| +++..+++++++..++ ++
T Consensus 83 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~ 162 (665)
T 1pn0_A 83 TIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYP 162 (665)
T ss_dssp EEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCC
T ss_pred eEEEEeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCC
Confidence 111110 0000 011112356899999999999999887 7999999999998875 46
Q ss_pred EEEEEc------------------------------------------CC--cEEEcCEEEEccCCChHHHHHhcCCCCC
Q 008915 238 AVLLLA------------------------------------------EG--KILSSHLIIDAMGNFSPVVKQIRSGRKP 273 (549)
Q Consensus 238 v~V~~~------------------------------------------dG--~~i~ArlVI~ADG~~S~vrrql~~~~~~ 273 (549)
|+|++. +| ++++||+||+|||.+|.||+++++..+.
T Consensus 163 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g 242 (665)
T 1pn0_A 163 VTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIG 242 (665)
T ss_dssp EEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEE
T ss_pred EEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCC
Confidence 777653 34 4799999999999999999999875432
Q ss_pred Ccee---eEEeEee-eccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCC-------CCccc
Q 008915 274 DGVC---LVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-------AGSPK 342 (549)
Q Consensus 274 ~~~~---~~vg~~~-~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~-------~~~~~ 342 (549)
.... .++.... ..+++... ...+.. . ..+++| .+|..++ ...+.+...... ....+
T Consensus 243 ~~~~~~~~v~d~~~~~~~p~~~~-~~~~~~---~-----~~g~~~-~~P~~~~---~~r~~~~~~~~~~~~~~~~~~~~t 309 (665)
T 1pn0_A 243 EQTDYIWGVLDAVPASNFPDIRS-RCAIHS---A-----ESGSIM-IIPRENN---LVRFYVQLQARAEKGGRVDRTKFT 309 (665)
T ss_dssp EEEEEEEEEEEEEEECCCTTTTS-EEEEEC---S-----SSCEEE-EEECSTT---CEEEEEEECC----------CCCC
T ss_pred CCccEEEEEEEEEECCCCCCcce-EEEEEe---C-----CCceEE-EEEcCCC---EEEEEEEeCCccccccccCcCCCC
Confidence 1111 1111111 11221100 011100 0 134555 6787755 233323222211 01124
Q ss_pred HHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCcc-CCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHH
Q 008915 343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTG 421 (549)
Q Consensus 343 L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~-~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~ 421 (549)
.+++.+.+.+.++.+. ..+....+ +..++.......++. .+||+|+|||||.++|++|||+|.++.|+..|+..
T Consensus 310 ~e~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~r~a~~~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawk 384 (665)
T 1pn0_A 310 PEVVIANAKKIFHPYT-FDVQQLDW----FTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWK 384 (665)
T ss_dssp HHHHHHHHHHHHTTSC-CEEEEEEE----EEEEEEEEEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccc-CceeeEEE----EEeeeccceehhhcccCCCEEEEECccccCCCcccCCcchhHHHHHHHHHH
Confidence 5555554433332211 01111111 122333322344666 69999999999999999999999999999999999
Q ss_pred HHHHHhCCCCChhhhHhhhhhhh
Q 008915 422 VYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 422 i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
|...++. . .....|..|++
T Consensus 385 La~vl~g-~---a~~~lL~tYe~ 403 (665)
T 1pn0_A 385 LGLVLTG-R---AKRDILKTYEE 403 (665)
T ss_dssp HHHHHTT-C---BCGGGGHHHHH
T ss_pred HHHHHcC-C---CcHHHHHHHHH
Confidence 9988863 2 12345789994
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=259.15 Aligned_cols=316 Identities=15% Similarity=0.104 Sum_probs=197.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhh-------ccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT-------KFNP 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~-------~~~~ 181 (549)
++|||||||| +|+++|+.|+++|++|+||||.+.++......+++.....|..+|+++. +...-.. .+..
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~--l~~~~~~~~~~~~~~~~~ 100 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEK--IDAQNYVKKPSATFLWGQ 100 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHH--HHHHCCEEECEEEEECSS
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHH--HHhcCCcccCCcEEEecC
Confidence 5999999976 5999999999999999999999887766566788999999999998642 1111000 0000
Q ss_pred ----CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CCEEEEEEc-CC--cEEEcCEE
Q 008915 182 ----NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLA-EG--KILSSHLI 253 (549)
Q Consensus 182 ----~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~V~~~-dG--~~i~ArlV 253 (549)
....|............++.+++..|.+.|.+++.+.|++++++++|+++..+ ++.+.|++. +| .+++|++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlV 180 (591)
T 3i3l_A 101 DQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFV 180 (591)
T ss_dssp SCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEE
T ss_pred CCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEE
Confidence 00111110000001123467899999999999999999999999999999875 556778776 66 58999999
Q ss_pred EEccCCChHHHHHhcCCCCCCceee-EEeEeeec---cCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEE
Q 008915 254 IDAMGNFSPVVKQIRSGRKPDGVCL-VVGSCARG---FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (549)
Q Consensus 254 I~ADG~~S~vrrql~~~~~~~~~~~-~vg~~~~g---~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (549)
|+|||.+|.++++++.......... .+...... .+.......+.. .. ..+++| .+|..++ ....
T Consensus 181 V~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~---~~-----~~G~~w-~iPl~~~---~~sv 248 (591)
T 3i3l_A 181 IDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSI---TF-----EDGWVW-MIPIKDD---LYSV 248 (591)
T ss_dssp EECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTTCEEEE---EE-----TTEEEE-EEECSSS---EEEE
T ss_pred EECCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCCceEEE---Ec-----CCcEEE-EEECCCC---eEEE
Confidence 9999999999999876432111110 01111111 111111111110 01 247788 7998765 3333
Q ss_pred EEEccCCCCC---cccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 008915 330 MFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (549)
Q Consensus 330 l~~~~~~~~~---~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~ 406 (549)
.+........ ..+.+++++++....|.+... +........ ...++.+.....++..+|+++||||||+++|++|+
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~p~l~~~-l~~~~~~~~-~~~~~~~~~~~~~~~~~rvvLIGDAAh~~~Pl~Gq 326 (591)
T 3i3l_A 249 GLVVDRSKSAEVREQGADAFYSSTLAKCAKAMDI-LGGAEQVDE-VRIVQDWSYDTEVFSADRFFLCGDAACFTDPLFSQ 326 (591)
T ss_dssp EEEEEGGGHHHHHHHCHHHHHHHHHTTCHHHHHH-HTTCEECSC-CEEEEEEEEEESCSEETTEEECGGGTCBCCGGGCC
T ss_pred EEEcCHHHHhhhccCCHHHHHHHHHHhCHHHHHH-HhcCccccC-ceEecccccchhhcccCCEEEEccccccCCCcccc
Confidence 3332221100 113456666666666654332 111111100 00112221123356789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 407 G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
|++++++|+..|++.|..++..+... -..++.|++
T Consensus 327 GinlAl~dA~~LA~~L~~~l~~~~~~---~~al~~Y~~ 361 (591)
T 3i3l_A 327 GVHLASQSAVSAAAAIDRITRHGDEK---DAVHAWYNR 361 (591)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCchH---HHHHHHHHH
Confidence 99999999999999999998765321 234577874
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=235.54 Aligned_cols=304 Identities=15% Similarity=0.130 Sum_probs=177.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC--CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR--EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~--~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.+||+||||| +|+++|+.|+++|++|+|+||.+.+.. ...+.+++..++.|.++|+++ ... . .....+.+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~-~~~----~--~~~~~~~~ 77 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL-DSI----S--VPSSSMEY 77 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG-GGT----C--BCCCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc-ccc----c--ccccceEE
Confidence 5899999976 599999999999999999999876422 344568899999999999875 111 0 11111111
Q ss_pred c---CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 187 E---GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 187 ~---~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
. .+..+.........+++..|.+.|.+.+ .|++++.+++|+++..++++++|++.+|++++||+||+|||.+|.+
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 155 (397)
T 2vou_A 78 VDALTGERVGSVPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVV 155 (397)
T ss_dssp EETTTCCEEEEEECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred EecCCCCccccccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchhH
Confidence 1 1111110000012356778888888876 4789999999999999999999999889899999999999999999
Q ss_pred HHHhcCCCCCCcee--eEEeEeee-ccCCC------ceeeeeecCCcccccCCCCceeEEEEecCCC--CCcc-ceEEEE
Q 008915 264 VKQIRSGRKPDGVC--LVVGSCAR-GFKDN------STSDVIYSSSSVKKVGDSEVQLFWEAFPAGS--GPLD-RTTYMF 331 (549)
Q Consensus 264 rrql~~~~~~~~~~--~~vg~~~~-g~~~~------~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~--g~~~-~~~~l~ 331 (549)
|++++ ...+.... ...+.+.. .++.. ....++... +..++ .+|..+ +... ...+.+
T Consensus 156 r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~g~~~~~~~~~~ 223 (397)
T 2vou_A 156 RKRLL-GIEPTYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLLD---------DGHLI--AYPIPGRENAESPRLNFQW 223 (397)
T ss_dssp HHHHH-CCCCEEEEEEEEEEEECTTSSCHHHHHHHTTEEEEEEET---------TEEEE--EEEECCSSTTSCCEEEEEE
T ss_pred HHHhc-cCCCCccceEEEEEEeeccccChhhhhhhcCceeEEecC---------CCEEE--EEECCCCCCccceeEEEEE
Confidence 99998 54332111 01111110 01100 000111100 11111 122221 1000 111111
Q ss_pred EccCCC----------C--------------CcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccC
Q 008915 332 TYIDPQ----------A--------------GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAF 387 (549)
Q Consensus 332 ~~~~~~----------~--------------~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~ 387 (549)
...... . ....++++.+.+...++.+... ++... . . ..+|.+.....++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~-~~~~~~~~~~~~~~~ 298 (397)
T 2vou_A 224 YWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKPFRDL-VLNAS--S-P-FVTVVADATVDRMVH 298 (397)
T ss_dssp EEECCTTHHHHHHTBCTTSCBCSSEECGGGCCHHHHHHHHHHHTTSCHHHHHH-HHHCS--S-C-EEEEEEEBCCSCSEE
T ss_pred EecCCCccchhhhccCCCCcccccccCcccCCHHHHHHHHHHHHhhChHHHHH-HhccC--C-c-ceeeeeeecCCceec
Confidence 111000 0 1113344444432222222211 11100 0 0 123443333446778
Q ss_pred CcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 388 NRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 388 ~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
+|++|||||||.++|++|||+|.+++|+..|++.|.. .+ +. -..|+.|++..
T Consensus 299 grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~---~~--~~--~~~L~~Ye~~R 350 (397)
T 2vou_A 299 GRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK---NH--DL--RGSLQSWETRQ 350 (397)
T ss_dssp TTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH---CS--CH--HHHHHHHHHHH
T ss_pred CcEEEEeccccccCCcchhhHHHHHHHHHHHHHHHhc---CC--CH--HHHHHHHHHHH
Confidence 9999999999999999999999999999999888763 11 11 24578999543
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=242.48 Aligned_cols=307 Identities=18% Similarity=0.105 Sum_probs=185.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.+||+||||| +|+++|..|+++|++|+||||.+.++. .....+++..+..|.++|+++. +.. .......+.+.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~--~~~---~~~~~~~~~~~ 85 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDD--VLQ---GSHTPPTYETW 85 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHH--HHT---TCBCCSCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHH--HHh---hCCCccceEEE
Confidence 5899999976 599999999999999999999887653 3456788999999999998642 111 11111111111
Q ss_pred C-Ccccc-cc--ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 188 G-KGEIW-VE--DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 188 ~-~~~l~-~~--~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
. +..+. .+ ....+.+++..|.+.|.+.+.+.|++++.+++|+++.. ++ .|++++|++++||+||+|||.+|.+
T Consensus 86 ~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~-~v~~~~g~~~~ad~vV~AdG~~s~v 162 (379)
T 3alj_A 86 MHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG-RLTLQTGEVLEADLIVGADGVGSKV 162 (379)
T ss_dssp ETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT-EEEETTSCEEECSEEEECCCTTCHH
T ss_pred eCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC-EEEECCCCEEEcCEEEECCCccHHH
Confidence 1 11100 00 11136789999999999999999999999999999976 44 7888888899999999999999999
Q ss_pred HHHhcCCCCCCc--eeeEEeEeee-----ccCC-CceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccC
Q 008915 264 VKQIRSGRKPDG--VCLVVGSCAR-----GFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID 335 (549)
Q Consensus 264 rrql~~~~~~~~--~~~~vg~~~~-----g~~~-~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~ 335 (549)
+++++....+.. .....+.+.. ...+ ....+.+.. .. ..+++| .+|.+++ ...+.+....
T Consensus 163 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~-~~p~~~~---~~~~~~~~~~ 230 (379)
T 3alj_A 163 RDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNF---WP-----RVQRIL-YSPCNEN---ELYLGLMAPA 230 (379)
T ss_dssp HHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSCTTSEEEEECC---SS-----SCCEEE-EEECSSS---EEEEEEEECT
T ss_pred HHHhcCCCCcCcCCcEEEEEEechhhccCCcCCcccccccceE---EC-----CCCEEE-EEECCCC---cEEEEEEecC
Confidence 999875321111 1000111110 0000 011121101 11 246777 7898865 3333333322
Q ss_pred CCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHH
Q 008915 336 PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRH 414 (549)
Q Consensus 336 ~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd 414 (549)
..+....+.+.+..+...++.+... ++..+... ...+|.+.. ...++..+|++|||||||.++|++|||+|.+++|
T Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~~~-l~~~~~~~--~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~ai~d 307 (379)
T 3alj_A 231 ADPRGSSVPIDLEVWVEMFPFLEPC-LIEAAKLK--TARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVN 307 (379)
T ss_dssp TCTTTTCSSCCHHHHHHHCGGGHHH-HHHHHTCT--TCCEEEEEEEEESCSEETTEEECTHHHHCCCGGGSCHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCchhccHHHH-HhhCCccc--eEEecccccCCCCCcccCcEEEEEcccCCCCcchhhhHHHHHHH
Confidence 1111123444455555444411111 00000000 001122211 1234567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 415 LGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 415 ~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
+..|++.|... + + ....|+.|++..
T Consensus 308 a~~La~~L~~~---~--~--~~~~l~~Y~~~r 332 (379)
T 3alj_A 308 AFSLSQDLEEG---S--S--VEDALVAWETRI 332 (379)
T ss_dssp HHHHHHHTTSS---S--C--HHHHHHHHHHHH
T ss_pred HHHHHHHhccc---c--C--HHHHHHHHHHHH
Confidence 98888776431 1 1 134578999543
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-25 Score=246.18 Aligned_cols=312 Identities=16% Similarity=0.179 Sum_probs=189.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHh-CCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhh--hh---ccC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEAT--AT---KFN 180 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr-~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i--~~---~~~ 180 (549)
.++||+||||| +|+++|+.|++ +|++|+||||.+.+.. .+...+++.+++.|.++|++++ +...- .. -+.
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~--~~~~~~~~~~~~~~~ 108 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADS--ILKEACWINDVTFWK 108 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHH--HHHHSEEECEEEEEE
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHH--HHHhcccccceEEEC
Confidence 36999999965 69999999999 9999999999986653 3567899999999999998643 11100 00 000
Q ss_pred -----CCcccccC---CccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEECC----EEEEEEc---
Q 008915 181 -----PNRCGFEG---KGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN----AAVLLLA--- 243 (549)
Q Consensus 181 -----~~~i~f~~---~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d----gv~V~~~--- 243 (549)
.+.+.... ...........+.+++..+.+.|.+++.+.|+ +++.+++|+++..+++ +++|+++
T Consensus 109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~ 188 (639)
T 2dkh_A 109 PDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCD 188 (639)
T ss_dssp ECTTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECS
T ss_pred CCCCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecc
Confidence 01110000 00000011112468999999999999999987 9999999999998763 5777765
Q ss_pred ---CC--cEEEcCEEEEccCCChHHHHHhcCCCC---CCceeeEEeEee-eccCCCceeeeeecCCcccccCCCCceeEE
Q 008915 244 ---EG--KILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFW 314 (549)
Q Consensus 244 ---dG--~~i~ArlVI~ADG~~S~vrrql~~~~~---~~~~~~~vg~~~-~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W 314 (549)
+| .+++||+||+|||.+|.||+++++..+ ......++.... ..+++.. ....+ .. ..+++|
T Consensus 189 ~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~p~~~-~~~~~-----~~----~~g~~~ 258 (639)
T 2dkh_A 189 AAHAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDVR-YKVAI-----QS----EQGNVL 258 (639)
T ss_dssp GGGTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCEEEEEEEEEECCTTTT-SEEEE-----EE----TTEEEE
T ss_pred ccCCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceEEEEEEEEccCCCccc-eeEEE-----Ec----CCceEE
Confidence 45 479999999999999999999976532 111111111111 1122110 00111 00 135666
Q ss_pred EEecCCCCCccceEEEEEccC--CC----CCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCcc--
Q 008915 315 EAFPAGSGPLDRTTYMFTYID--PQ----AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-- 386 (549)
Q Consensus 315 ~~fP~~~g~~~~~~~l~~~~~--~~----~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~-- 386 (549)
.+|..++. ...+.+.... .. ....+.+++.+.+.+.+..+. ..+....+ +..++.......++.
T Consensus 259 -~~P~~~~~--~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~a~~~~~~ 330 (639)
T 2dkh_A 259 -IIPREGGH--LVRFYVEMDKLDADERVASRNITVEQLIATAQRVLHPYK-LEVKNVPW----WSVYEIGQRICAKYDDV 330 (639)
T ss_dssp -EEECTTSS--CEEEEEECC-----------CCCHHHHHHHHHHHHTTSC-EEEEEEEE----EEEECCCCEECSCSBSC
T ss_pred -EEEcCCCc--EEEEEEECCCcCcccccccCCCCHHHHHHHHHHHhCccc-CcceeeeE----EEecccccchhhhhhcc
Confidence 68877541 2223333222 00 011244555544433332211 00111111 112232211222333
Q ss_pred ----------CCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 387 ----------FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 387 ----------~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
.+||+|+|||||.++|++|||+|.++.|+..|+..|...++.. + ....|..|++
T Consensus 331 ~~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl~g~--a--~~~lL~~Ye~ 394 (639)
T 2dkh_A 331 VDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQ--C--APELLHTYSS 394 (639)
T ss_dssp CCSSCCTTSCCCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHHTTS--B--CGGGGHHHHH
T ss_pred ccccccccCccCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHHcCC--C--cHHHHHHHHH
Confidence 7999999999999999999999999999999999999888642 1 2245688993
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=232.23 Aligned_cols=324 Identities=17% Similarity=0.170 Sum_probs=174.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC-c--cccCCHHHHHHHHHcCCCCcccchhhhh-hccCCCccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-Q--EWNISRKELLELVESGILVEDDIDEATA-TKFNPNRCG 185 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r--~~~IS~~~l~~L~~lGl~~~~eie~~i~-~~~~~~~i~ 185 (549)
-.|+||||| +|+++|+.|+++|++|+|+||.+.+... + ...+++..+..|.++|+.+. +..+.. .........
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~--~~~~~~~~~~~~~~~~ 79 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAEN--WLAFEEASRYIGGQSR 79 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHH--HHHHHHHCEEECCCCE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHH--HHHhhhhhcccCccee
Confidence 369999965 6999999999999999999998876542 2 23577899999999997542 111100 001000000
Q ss_pred c----------cCC-cccc--ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEEcC
Q 008915 186 F----------EGK-GEIW--VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSH 251 (549)
Q Consensus 186 f----------~~~-~~l~--~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~Ar 251 (549)
+ .+. .+.. ......+.|++..|.+.|.+.+ +.+|+.++++++++..++ +++|+++||++++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~---~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~ad 156 (412)
T 4hb9_A 80 FYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGL---ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVD 156 (412)
T ss_dssp EECTTSCEEEC--------------CEEEEEHHHHHHHHHTTC---TTTEECSCCEEEEEECTTSCEEEEETTSCEEEES
T ss_pred EecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhc---cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEee
Confidence 0 000 0000 0001124688888888887654 457999999999987655 588999999999999
Q ss_pred EEEEccCCChHHHHHhcCCCCCCcee--eEEeEeeeccC-CCceeeeeecCCcccccCCCCc---eeEEEEecCCCCC--
Q 008915 252 LIIDAMGNFSPVVKQIRSGRKPDGVC--LVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEV---QLFWEAFPAGSGP-- 323 (549)
Q Consensus 252 lVI~ADG~~S~vrrql~~~~~~~~~~--~~vg~~~~g~~-~~~~~ei~~~~~~~~~~~~~~~---~~~W~~fP~~~g~-- 323 (549)
+||+|||.+|.||++++...+..... ...+....... .....+.+....+....+.... -.+| ..|.....
T Consensus 157 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 235 (412)
T 4hb9_A 157 VLVGADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTALLPQNFRDGTPNSIVPKSPDWLFISMW-RAPVNIHVEA 235 (412)
T ss_dssp EEEECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHHHSCGGGTSSCCEEECCSSSEEEEEEEE-EEESCTTSCG
T ss_pred EEEECCCCCcchHHHhCCCccccccceeEEEEEEecchhhhcchhhhhccCCcceEeecCCCcceeeee-ecCCceeEEE
Confidence 99999999999999997654432211 11111100000 0000000000000000000000 1122 12221100
Q ss_pred -----ccceEEEEEcc-CCCCCc------ccHHHHHHHHH-HhCcccccccCCceeEeeeeeeeeccccC-CCCCccCCc
Q 008915 324 -----LDRTTYMFTYI-DPQAGS------PKLEELLERYW-DLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNR 389 (549)
Q Consensus 324 -----~~~~~~l~~~~-~~~~~~------~~L~~l~~~~~-~~lp~~~~~~l~~~~~~r~~~g~~P~~~~-~~~~~~~~r 389 (549)
.....+++... +..+.. ..+.+.+.+.+ ...|.++.+ ++...... . ..++.+.. ...++..+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l-i~~~~~~~-~-~~~~~~~~~~~~~~~~gr 312 (412)
T 4hb9_A 236 SLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRMISWDPSLHTL-VQQSDMEN-I-SPLHLRSMPHLLPWKSST 312 (412)
T ss_dssp GGCCEEEEEEEEEEEEGGGSCTTGGGCCHHHHHHHHHHHTTTSCHHHHHH-HHTSCTTC-C-EEEEEEECCCCCCCCCCS
T ss_pred eccCCCceEEEEEecccccccccccccchHHHHHHHHHHhccCChHHHHH-HHhcccce-e-ccchhccccccccccccC
Confidence 01112222111 111111 12222222222 122333221 01100000 0 00111111 123567799
Q ss_pred EEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 390 ILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 390 vlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
|+|||||||.++|+.|||+|.++.|+..|++.|..++.... +. -..|+.||+..
T Consensus 313 v~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~~~-~~--~~aL~~Ye~~R 366 (412)
T 4hb9_A 313 VTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASGHE-EL--VKAISDYEQQM 366 (412)
T ss_dssp EEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTTSS-CH--HHHHHHHHHHH
T ss_pred EEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCc-CH--HHHHHHHHHHH
Confidence 99999999999999999999999999999999998876542 21 23478999543
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=231.91 Aligned_cols=308 Identities=18% Similarity=0.243 Sum_probs=182.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCc-EEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~Glr-VlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
++|||||||| +|+++|..|+++|++ |+|+||.+.++. .+...+++..++.|.++|+++. +... ......+.+
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~--l~~~---~~~~~~~~~ 78 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA--LAAT---AIPTHELRY 78 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHH--HHHH---SEEECEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHH--HHhh---CCCcceEEE
Confidence 5899999975 599999999999999 999999887653 3456788999999999998643 2111 000000111
Q ss_pred cC--Cccccc-------c-ccccceeCHHHHHHHHHHHHHhc-CC-EEEeCceEEEEEEECCEEEEEEcC---C--cEEE
Q 008915 187 EG--KGEIWV-------E-DILNLGVSPAKLIEIVKKRFISL-GG-VIFEGYSVSSICTYENAAVLLLAE---G--KILS 249 (549)
Q Consensus 187 ~~--~~~l~~-------~-~~l~~~V~~~~L~~~L~~~a~~~-G~-~v~~~t~v~~i~~~~dgv~V~~~d---G--~~i~ 249 (549)
.. +..+.. . ....+.+++..|.+.|.+++.+. |. +++.+++|+++.. +++++|++.+ | .+++
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ 157 (410)
T 3c96_A 79 IDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALG 157 (410)
T ss_dssp ECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEE
T ss_pred EcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEe
Confidence 10 000000 0 01125689999999999999873 74 8999999999988 7788888765 7 4899
Q ss_pred cCEEEEccCCChHHHHHhcCCCCCCcee---eEEeEee-eccCCCceeeeeecCCcccccCCCCceeEEEEecCCC----
Q 008915 250 SHLIIDAMGNFSPVVKQIRSGRKPDGVC---LVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGS---- 321 (549)
Q Consensus 250 ArlVI~ADG~~S~vrrql~~~~~~~~~~---~~vg~~~-~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~---- 321 (549)
||+||+|||.+|.+|++++......... ...+... ..+..... .+++. + . ..+++| .||..+
T Consensus 158 ad~vV~AdG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~--~-~-----~~~~~~-~~p~~~~~~~ 227 (410)
T 3c96_A 158 ADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFLDGKT-MIVAN--D-E-----HWSRLV-AYPISARHAA 227 (410)
T ss_dssp ESEEEECCCTTCHHHHHHCTTCCCCEEEEEEEEEEEEEESCCTTSSE-EEEEE--C-T-----TCCEEE-EEECCHHHHT
T ss_pred cCEEEECCCccchhHHHhcCCCCCCCcCCeeEEEeecccccccCCCe-EEEec--C-C-----CCcEEE-EEecCCcccC
Confidence 9999999999999999986543211111 1001110 01101111 11111 1 0 124455 577642
Q ss_pred -CCccceEEEEEccC--------CCC-C-cccHHHHHHHHHHhCc---ccccccCCceeEeeeeeeeeccccCC-CCCcc
Q 008915 322 -GPLDRTTYMFTYID--------PQA-G-SPKLEELLERYWDLMP---EYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAA 386 (549)
Q Consensus 322 -g~~~~~~~l~~~~~--------~~~-~-~~~L~~l~~~~~~~lp---~~~~~~l~~~~~~r~~~g~~P~~~~~-~~~~~ 386 (549)
+. ....+.+.... ... . ....+++.+.|....+ .+... +.... .. ..+|..... ..++.
T Consensus 228 ~g~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-i~~~~---~~-~~~~~~~~~~~~~~~ 301 (410)
T 3c96_A 228 EGK-SLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDL-LTRNQ---LI-LQYPMVDRDPLPHWG 301 (410)
T ss_dssp TTC-EEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHHHHHTTCCBTTBCHHHH-HHTCS---EE-EEEEEEECCCCSCCC
T ss_pred CCC-cEEEEEEEecCcccccCCCccccCCCCCHHHHHHHhcCCCCchhHHHHH-HhcCc---cc-ceeecccCCCccccc
Confidence 21 12222222110 000 1 1244555544332211 11111 01111 01 123433222 23567
Q ss_pred CCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 387 FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 387 ~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
.+||+|||||||.++|++|||+|++++|+..|++.|... + .....|+.|++..
T Consensus 302 ~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~---~----~~~~~L~~Ye~~r 354 (410)
T 3c96_A 302 RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARN---A----DVAAALREYEEAR 354 (410)
T ss_dssp BTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC---S----SHHHHHHHHHHHH
T ss_pred cCCEEEEecccCCCCCccchhHHHHHHHHHHHHHHHhcc---C----CHHHHHHHHHHHH
Confidence 799999999999999999999999999999999887652 2 1234578999543
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=236.07 Aligned_cols=306 Identities=13% Similarity=0.088 Sum_probs=184.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhh-----cc-C-
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATAT-----KF-N- 180 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~-----~~-~- 180 (549)
++||+||||| +|+++|+.|+++|++|+||||.+.+.. .+...++..+++.|.++|+++...-...... .+ .
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 105 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR 105 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence 5999999965 699999999999999999999976543 3566789999999999998642110000000 00 0
Q ss_pred -CC-c---ccccCCc---cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---C--cE
Q 008915 181 -PN-R---CGFEGKG---EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KI 247 (549)
Q Consensus 181 -~~-~---i~f~~~~---~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d---G--~~ 247 (549)
.+ . +.+.... .........+.+++..|.+.|.+++.+. ++.+++|++++.++++|+|++.+ | .+
T Consensus 106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~ 182 (549)
T 2r0c_A 106 VGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRA 182 (549)
T ss_dssp BTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred CCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEE
Confidence 00 0 0010000 0000011236689999999999999876 99999999999999999888765 6 47
Q ss_pred EEcCEEEEccCCChHHHHHhcCCCCC---CceeeEEeEeeeccC---CCceeeeeecCCcccccCCCCceeEEEEecCCC
Q 008915 248 LSSHLIIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFK---DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGS 321 (549)
Q Consensus 248 i~ArlVI~ADG~~S~vrrql~~~~~~---~~~~~~vg~~~~g~~---~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~ 321 (549)
++||+||+|||.+|.||++++++.+. .+.+..+......+. ........+. ..+ +...+| .+|..+
T Consensus 183 i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p----~~~~~~-~~p~~~ 254 (549)
T 2r0c_A 183 VHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLGERAALFFFL---MLS----SSLRFP-LRALDG 254 (549)
T ss_dssp EEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEEEEEECTTHHHHHGGGCCSEEEE---EEE----TTEEEE-EEESSS
T ss_pred EEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEEEEEECCchHHhcCCCCceEEEE---ECC----CCcEEE-EEEECC
Confidence 99999999999999999999875432 121111111000010 0000000000 001 112334 566643
Q ss_pred CCccceEEEEEccC-CC-CCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCC
Q 008915 322 GPLDRTTYMFTYID-PQ-AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399 (549)
Q Consensus 322 g~~~~~~~l~~~~~-~~-~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~ 399 (549)
+ .. +.+.... .. .....+.+.+++++. . .. . .++... ..++.......++..+||+|+|||||.
T Consensus 255 ~--~~--~~~~~~~~~~~~~~~~~~~~l~~~~~---~--~~--~-~~~~~~--~~~~~~~~~a~~~~~grv~L~GDAAH~ 320 (549)
T 2r0c_A 255 R--GL--YRLTVGVDDASKSTMDSFELVRRAVA---F--DT--E-IEVLSD--SEWHLTHRVADSFSAGRVFLTGDAAHT 320 (549)
T ss_dssp S--SE--EEEEEECSTTCCSCCCHHHHHHHHBC---S--CC--C-CEEEEE--EEEEECCEECSCSEETTEEECGGGTEE
T ss_pred C--cE--EEEEecCCCCCCCHHHHHHHHHHHhC---C--CC--c-eeEEEE--ecchhHhhhHHhhcCCcEEEEcccccc
Confidence 2 12 2222211 11 111244555544432 1 11 1 122211 223333333446778999999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 400 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 400 v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
++|+.|||+|.+++|+..|+..|...++... . ...|..|++
T Consensus 321 ~~P~~GqG~n~gi~DA~~La~~La~~l~g~a-~---~~lL~~Y~~ 361 (549)
T 2r0c_A 321 LSPSGGFGMNTGIGSAADLGWKLAATLRGWA-G---PGLLATYEE 361 (549)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHHHHHTCS-C---TTTTHHHHH
T ss_pred CCCccCCccccccHHHHHHHHHHHHHHcCCC-C---HHHHHHHHH
Confidence 9999999999999999999999998886421 1 234688994
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=228.18 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=108.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC---CccccCCH-HHHHHHHHcCCCCcccchhhhhhccCCCcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR---EQEWNISR-KELLELVESGILVEDDIDEATATKFNPNRC 184 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~---~r~~~IS~-~~l~~L~~lGl~~~~eie~~i~~~~~~~~i 184 (549)
++||+||||| +|+++|..|+++|++|+|+||.+.+.. ...+.+++ .....|.++|+++. +.... ..... .+
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~--~~~~~-~~~~~-~~ 101 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQT--YYDLA-LPMGV-NI 101 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHH--HHHHC-BCCCE-EE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHH--HHHhh-cccce-EE
Confidence 5899999976 599999999999999999999876532 12344543 34778899998753 21110 00000 00
Q ss_pred cccCCccc-cc--c---ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 185 GFEGKGEI-WV--E---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 185 ~f~~~~~l-~~--~---~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
....+..+ .. + ......+++..|.+.|.+++.+ ++++.+++|+++..++++++|++.+|++++||+||+|||
T Consensus 102 ~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG 179 (398)
T 2xdo_A 102 ADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLEN--DTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANG 179 (398)
T ss_dssp ECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCT--TSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSC
T ss_pred ECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCC--CEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCC
Confidence 00001000 00 1 0112458999999999987753 689999999999998888999998888899999999999
Q ss_pred CChHHHHHhcC
Q 008915 259 NFSPVVKQIRS 269 (549)
Q Consensus 259 ~~S~vrrql~~ 269 (549)
.+|.+|++++.
T Consensus 180 ~~S~vR~~l~~ 190 (398)
T 2xdo_A 180 GMSKVRKFVTD 190 (398)
T ss_dssp TTCSCCTTTCC
T ss_pred cchhHHhhccC
Confidence 99999998853
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=225.27 Aligned_cols=323 Identities=14% Similarity=0.093 Sum_probs=182.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhC------CCcEEEEccCCCCCCC--ccccCCHHHHHHHHHcCCCCc--ccchhhhhh-
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK------GLRVAIVERNTLKGRE--QEWNISRKELLELVESGILVE--DDIDEATAT- 177 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~------GlrVlLIEr~~~~~~~--r~~~IS~~~l~~L~~lGl~~~--~eie~~i~~- 177 (549)
+||||||||| +|+++|+.|+++ |++|+||||.+.++.+ ....+++..++.| ++-|.. ..++..+..
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l~~~~~~g~~~~~~~~~~ 112 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--FPDWKEKGAPLNTPVTED 112 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--CTTHHHHTCCCCEECCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--HHHHHhcCCceeeeechh
Confidence 5999999965 699999999998 9999999999876542 2234666666555 221110 001000000
Q ss_pred c--c-CC-CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EE-EEEc------CC
Q 008915 178 K--F-NP-NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLLA------EG 245 (549)
Q Consensus 178 ~--~-~~-~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~-V~~~------dG 245 (549)
. + .. ..+.+............++.+++..|.++|.+++.+.|++++.+++|+++..++++ ++ |.+. +|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G 192 (584)
T 2gmh_A 113 RFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDG 192 (584)
T ss_dssp EEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTS
T ss_pred heeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCC
Confidence 0 0 00 01111100000011112567899999999999999999999999999999887754 43 6654 23
Q ss_pred ---------cEEEcCEEEEccCCChHHHHHh----cCCC--CCCceeeEEeEeeeccC--CCceeee--eecCCcccccC
Q 008915 246 ---------KILSSHLIIDAMGNFSPVVKQI----RSGR--KPDGVCLVVGSCARGFK--DNSTSDV--IYSSSSVKKVG 306 (549)
Q Consensus 246 ---------~~i~ArlVI~ADG~~S~vrrql----~~~~--~~~~~~~~vg~~~~g~~--~~~~~ei--~~~~~~~~~~~ 306 (549)
.+++||+||+|||.+|.+++++ +... .+......+.... .++ ....+.+ .+.. +....
T Consensus 193 ~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~~g~g~~~~~-~v~~~~~~~~~~~~~~g~-~~~~~- 269 (584)
T 2gmh_A 193 APKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELW-VIDEKKWKPGRVDHTVGW-PLDRH- 269 (584)
T ss_dssp CEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCEEEEEEEEE-ECCGGGCCTTEEEEEEET-TSCTT-
T ss_pred CcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchhHHhhhhhhe-ecCcccccCCeEEEEEec-cccCC-
Confidence 5899999999999999999887 4332 1222221111111 111 0111111 1111 11110
Q ss_pred CCCceeEEEEecCC--CCCccceEEEEEccCCCCC-cccHHHHHHHHHHhCcccccccCCceeEeeee-eeeeccccCCC
Q 008915 307 DSEVQLFWEAFPAG--SGPLDRTTYMFTYIDPQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVI-YGIFPTYRDSP 382 (549)
Q Consensus 307 ~~~~~~~W~~fP~~--~g~~~~~~~l~~~~~~~~~-~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~-~g~~P~~~~~~ 382 (549)
..+..| .||.. ++ ...+.+.......+ ..+..+.+++|.. .|.+... ++..+..... ...++......
T Consensus 270 --~~gg~~-~~~~~~~~~---~~~vg~~~~~~~~~~~~~~~~~l~~~~~-~p~i~~~-l~~~~~~~~~~~~~~~~~~~~~ 341 (584)
T 2gmh_A 270 --TYGGSF-LYHLNEGEP---LLALGFVVGLDYQNPYLSPFREFQRWKH-HPSIKPT-LEGGKRIAYGARALNEGGFQSI 341 (584)
T ss_dssp --SCEEEE-EEECCSSSC---EEEEEEEEETTCCCTTCCHHHHHHHHTT-STTTHHH-HTTCEEEEEEEEEEECCGGGGC
T ss_pred --cCCceE-EEEecCCCC---eEEEEEEEecCcccccCChHHHHHHHHh-ChHHHHH-hCCCeEEEecceEccCCCcccC
Confidence 112344 45655 33 23333322211111 1133455555543 3444432 2222222111 11223322233
Q ss_pred CCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCC-CChhhhHhhhhhhhc
Q 008915 383 LPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF-VDSYSLSLLNPYMKL 445 (549)
Q Consensus 383 ~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~-l~~~~l~~L~~Y~~l 445 (549)
.++..+|++|||||||+++|++|+|+++++.|+..|++.|..+++.++ ....+...|+.|++.
T Consensus 342 ~~~~~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g~~~~~~a~~~L~~Ye~~ 405 (584)
T 2gmh_A 342 PKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDN 405 (584)
T ss_dssp CCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHH
T ss_pred CccccCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcCCcchhhhhhhHHHHHHH
Confidence 466789999999999999999999999999999999999999997663 222210125789843
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=226.00 Aligned_cols=290 Identities=14% Similarity=0.141 Sum_probs=170.9
Q ss_pred cccEEEEcch-HHHHHHHHHHh------------CCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhh
Q 008915 110 TFDVIVCGGT-LGIFIATALSF------------KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA 176 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr------------~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~ 176 (549)
.+|||||||| +|+++|+.|++ .|++|+|||+...++......+.+.....|..+|+.+..-+...-.
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~~g~g~~~~p~~~~~l~~lGi~e~~~~~~~~~ 86 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRSTLSKIGIDENDFIRQCDA 86 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCCCCSCEECCTHHHHHHHHHTCCHHHHHHHTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCCcceeeechHhHHHHHHHcCCCHHHHHHHcCC
Confidence 6899999976 59999999999 9999999999877654434467778888999999875310111100
Q ss_pred h--------ccCC------Cc--------------cccc------CC--------------------------ccccccc
Q 008915 177 T--------KFNP------NR--------------CGFE------GK--------------------------GEIWVED 196 (549)
Q Consensus 177 ~--------~~~~------~~--------------i~f~------~~--------------------------~~l~~~~ 196 (549)
. .+.. +. +.+. +. ..+..+.
T Consensus 87 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~~~~~~ 166 (526)
T 2pyx_A 87 SFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYHFQN 166 (526)
T ss_dssp EEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCTTCCSS
T ss_pred EEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccccCCCC
Confidence 0 0000 00 0010 00 0000001
Q ss_pred cccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEE--EEEEcCCcEEEcCEEEEccCCChHH-HHHhcCCCC
Q 008915 197 ILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPV-VKQIRSGRK 272 (549)
Q Consensus 197 ~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv--~V~~~dG~~i~ArlVI~ADG~~S~v-rrql~~~~~ 272 (549)
...+.+++..|.+.|.+++.+ .|++++.+ +|+++..+++++ .|.+++|.+++||+||+|||.+|.+ ++.++.+..
T Consensus 167 ~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~~~ 245 (526)
T 2pyx_A 167 NYGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQVPFL 245 (526)
T ss_dssp CCEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCCCEE
T ss_pred CeeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCcc
Confidence 123568999999999999998 89999999 699998876653 5666677789999999999999998 556654321
Q ss_pred ------CCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCcccHHHH
Q 008915 273 ------PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEEL 346 (549)
Q Consensus 273 ------~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~~L~~l 346 (549)
+...+..+.................. .. ..+++| .+|..++ ....+.+...........+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~g~~~-~~pl~~~----~~~~~v~~~~~~~~~~~~~~ 312 (526)
T 2pyx_A 246 SQKSVLFNDRALAIQVPYSDANSPIASCTHST---AQ-----PNGWIW-DIGLPTR----KGVGYVYSSSHTNDIDAQKT 312 (526)
T ss_dssp ECHHHHCCCEEEEEEEECSSTTCCCCSSEEEE---EE-----TTEEEE-EEECSSE----EEEEEEECTTTCCHHHHHHH
T ss_pred cccccccCccEEEEEeeccCCCCCCCCceeEE---ec-----CCCeEE-EeeCCCc----eEEEEEecCCCCChHHHHHH
Confidence 01111111111110000000000000 01 246788 7898753 22222222211122234444
Q ss_pred HHHHHHhCc-ccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 008915 347 LERYWDLMP-EYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY 423 (549)
Q Consensus 347 ~~~~~~~lp-~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~ 423 (549)
+.+++.... .+.. .+.. .++.......++..+|++|||||||.++|++|+|++.++.|+..|++.|.
T Consensus 313 l~~~l~~~~~~l~~---~~~~-------~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L~ 380 (526)
T 2pyx_A 313 LFNYLGVDGAAADK---LEPR-------QLAINPGYRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQLP 380 (526)
T ss_dssp HHHHHTCCHHHHHH---CCCE-------EEECCCEEESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCccccc---CCce-------EEecccCccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHhh
Confidence 444442211 1110 1111 12222112235567999999999999999999999999999888877653
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-23 Score=223.27 Aligned_cols=299 Identities=12% Similarity=0.091 Sum_probs=169.6
Q ss_pred cccEEEEcch-HHHHHHHHHHh---CCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhh-----hc--
Q 008915 110 TFDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA-----TK-- 178 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr---~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~-----~~-- 178 (549)
.+|||||||| +|+++|+.|++ +|++|+||||...+.......+.+.....+..+|+.+..-++.... ..
T Consensus 2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~~~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~~~~~~~~~~~ 81 (511)
T 2weu_A 2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDEREWLPRCAGGYKLGIRFE 81 (511)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC-------CCEECCTTHHHHHHHHTCCHHHHHHHTTCEEECEEEEE
T ss_pred cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCCceeeccccCcchHHHHHHcCCCHHHHHHHcCCeEeccceec
Confidence 4899999986 59999999999 9999999999876543333345555666788888764210111100 00
Q ss_pred -cC---------CCcc------cc-----------------------------cC----Cccc----c----------cc
Q 008915 179 -FN---------PNRC------GF-----------------------------EG----KGEI----W----------VE 195 (549)
Q Consensus 179 -~~---------~~~i------~f-----------------------------~~----~~~l----~----------~~ 195 (549)
+. .+.+ .+ .. ...+ . ..
T Consensus 82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (511)
T 2weu_A 82 NWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQR 161 (511)
T ss_dssp SSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGCC
T ss_pred CCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccCc
Confidence 00 0000 00 00 0000 0 00
Q ss_pred --ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE--EEEEEcCCcEEEcCEEEEccCCChHHHH-HhcCC
Q 008915 196 --DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPVVK-QIRSG 270 (549)
Q Consensus 196 --~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~dG~~i~ArlVI~ADG~~S~vrr-ql~~~ 270 (549)
...++.+++..|.+.|.+++.+.|++++.+ +|+++..++++ +.|.+++|++++||+||+|||.+|.+++ .++.+
T Consensus 162 ~~~~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~~ 240 (511)
T 2weu_A 162 AQFPYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGR 240 (511)
T ss_dssp SCCSCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCCC
T ss_pred CCCCeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCC
Confidence 123467999999999999999999999999 99999886666 5677778888999999999999999854 44543
Q ss_pred C------CCCceeeEEeEeeeccCCC--ceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCccc
Q 008915 271 R------KPDGVCLVVGSCARGFKDN--STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPK 342 (549)
Q Consensus 271 ~------~~~~~~~~vg~~~~g~~~~--~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~~ 342 (549)
. .+...+..+.. . .+.. ....... ... ..+++| .+|..+. ....+.+.........
T Consensus 241 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~---~~~-----~~g~~~-~~P~~~~----~~~g~~~~~~~~~~~~ 304 (511)
T 2weu_A 241 FQSFSDVLPNNRAVALRV--P-RENDEDMRPYTTA---TAM-----SAGWMW-TIPLFKR----DGNGYVYSDEFISPEE 304 (511)
T ss_dssp EEECTTTCCCCEEEEEEE--E-CSSGGGCCSSEEE---EEE-----TTEEEE-EEECSSE----EEEEEEECTTTSCHHH
T ss_pred CccccccCcccceEEEEe--c-cCCCCCCCcceec---eec-----CCCcEE-EEECCCc----eEEEEEECCCCCCHHH
Confidence 1 11111211111 1 1100 0000000 011 246788 7898742 2222233221111123
Q ss_pred HHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 008915 343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 422 (549)
Q Consensus 343 L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i 422 (549)
..+.+.+++...|.+ .+... ++.+.....++..+|+++||||||.++|++|+|++.++.++..|++.|
T Consensus 305 ~~~~l~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l 372 (511)
T 2weu_A 305 AERELRSTVAPGRDD-----LEANH-------IQMRIGRNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHF 372 (511)
T ss_dssp HHHHHHHHHCTTCTT-----SCCEE-------EECCCEEESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCccccc-----cccee-------EEeeccccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHh
Confidence 333344433322221 11111 122111122445699999999999999999999999999988877765
Q ss_pred HHHHhCCCCChhhhHhhhhhhh
Q 008915 423 YEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 423 ~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
. .+.... ..|+.|++
T Consensus 373 ~----~~~~~~---~~l~~Y~~ 387 (511)
T 2weu_A 373 P----GERWDP---VLISAYNE 387 (511)
T ss_dssp C----CTTCCH---HHHHHHHH
T ss_pred c----cCCCCH---HHHHHHHH
Confidence 4 222222 34567774
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-22 Score=219.65 Aligned_cols=299 Identities=14% Similarity=0.108 Sum_probs=174.0
Q ss_pred cccEEEEcch-HHHHHHHHHHh---CCCcEEEEccCCCCCCCccccCCHHHHH-HHHHcCCCCcccchhhh-----hh--
Q 008915 110 TFDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELL-ELVESGILVEDDIDEAT-----AT-- 177 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr---~GlrVlLIEr~~~~~~~r~~~IS~~~l~-~L~~lGl~~~~eie~~i-----~~-- 177 (549)
.+|||||||| +|+++|+.|++ .|++|+|||+.+.+.......+.+.... .+..+|+.+..-+...- ..
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~~~g~~~~p~~~~~~l~~lGi~~~~~~~~~~~~~~~g~~~ 104 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKF 104 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCCCCCCEECCTHHHHHTHHHHTCCHHHHHHHTTCEEECEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCccceeeeechhHHHHHHHHhCCChHHHHHhcCCeEEEeeeE
Confidence 6899999976 59999999999 9999999999876654333356667777 78888986431111110 00
Q ss_pred -ccCCC--------------cc---ccc--------------------CC-c-c----------cc---c---------c
Q 008915 178 -KFNPN--------------RC---GFE--------------------GK-G-E----------IW---V---------E 195 (549)
Q Consensus 178 -~~~~~--------------~i---~f~--------------------~~-~-~----------l~---~---------~ 195 (549)
.+... .. .|. +. . . +. . +
T Consensus 105 ~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (550)
T 2e4g_A 105 INWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKV 184 (550)
T ss_dssp ESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCTTSCBC
T ss_pred eecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhhcCCCC
Confidence 00000 00 000 00 0 0 00 0 0
Q ss_pred ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCE--EEEEEcCCcEEEcCEEEEccCCChHH-HHHhcCCC
Q 008915 196 DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPV-VKQIRSGR 271 (549)
Q Consensus 196 ~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg--v~V~~~dG~~i~ArlVI~ADG~~S~v-rrql~~~~ 271 (549)
....+.+++..|.+.|.+++.+. |++++.+ +|+++..++++ +.|.+++|++++||+||+|||.+|.+ ++.++.+.
T Consensus 185 ~~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~~~ 263 (550)
T 2e4g_A 185 TNYAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPF 263 (550)
T ss_dssp SCCEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCCCE
T ss_pred CCcceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCCCc
Confidence 12245689999999999999988 9999999 99999887665 56777788889999999999999998 44555432
Q ss_pred ------CCCceeeEEeEeeeccC--CCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCcccH
Q 008915 272 ------KPDGVCLVVGSCARGFK--DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKL 343 (549)
Q Consensus 272 ------~~~~~~~~vg~~~~g~~--~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~~L 343 (549)
.+...+..+........ ........ .. ..+++| .+|..+. ....+.+..........
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~g~~~-~ipl~~~----~~~g~v~~~~~~~~~~~ 328 (550)
T 2e4g_A 264 LDMSDHLLNDSAVATQVPHDDDANGVEPFTSAI-----AM-----KSGWTW-KIPMLGR----FGTGYVYSSRFATEDEA 328 (550)
T ss_dssp EECTTTCCCCEEEEEEEECCHHHHCCCSSEEEE-----EC-----SSEEEE-EEECSSE----EEEEEEECTTTSCHHHH
T ss_pred ccccccccccceEEEeecccCCcccCCCceeee-----ec-----CCceEE-EccCCCc----cceEEEEecCCCChHHH
Confidence 01111111111000000 00000000 00 247778 7888642 22233332211111233
Q ss_pred HHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 008915 344 EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY 423 (549)
Q Consensus 344 ~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i~ 423 (549)
.+.+.+++...|.+ .+.... +.......++..+|+++||||||.++|++|+|++.++.++..|++.|.
T Consensus 329 ~~~l~~~~~~~p~l-----~~~~~i-------~~~~~~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L~ 396 (550)
T 2e4g_A 329 VREFCEMWHLDPET-----QPLNRI-------RFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFP 396 (550)
T ss_dssp HHHHHHHTTCCTTT-----SCCEEE-------ECCCEEESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCcCccc-----CCCceE-------EecCCCccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhcc
Confidence 33344333222221 122211 111111224567999999999999999999999999999888876543
Q ss_pred HHHhCCCCChhhhHhhhhhh
Q 008915 424 EAVRGDFVDSYSLSLLNPYM 443 (549)
Q Consensus 424 ~Al~~g~l~~~~l~~L~~Y~ 443 (549)
.+.... ..|+.|+
T Consensus 397 ----~~~~~~---~~l~~Y~ 409 (550)
T 2e4g_A 397 ----DKSLNP---VLTARFN 409 (550)
T ss_dssp ----CTTCCH---HHHHHHH
T ss_pred ----ccCCCH---HHHHHHH
Confidence 332222 3456777
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-22 Score=217.10 Aligned_cols=285 Identities=13% Similarity=0.090 Sum_probs=166.8
Q ss_pred cccEEEEcch-HHHHHHHHHHh---CCCcEEEEccCCCCCCCccccCCHHHHH-HHHHcCCCCcccchhhhhh-----cc
Q 008915 110 TFDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELL-ELVESGILVEDDIDEATAT-----KF 179 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr---~GlrVlLIEr~~~~~~~r~~~IS~~~l~-~L~~lGl~~~~eie~~i~~-----~~ 179 (549)
.+|||||||| +|+++|+.|++ .|++|+||||...++.....++++.... .+..+|+.+..-++..... .|
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~g~~~ 84 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFKAAIKF 84 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCCCCSCEECCTHHHHHTHHHHTCCHHHHGGGGTCEEECEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCCcCCCcccchhHHHHHHHHhCCCHHHHHHhcCchhhCCccc
Confidence 5899999976 59999999999 9999999999876654333456666777 7888887642111111000 00
Q ss_pred ---CC------CcccccCCc--------cc--------------c------------------------ccccccceeCH
Q 008915 180 ---NP------NRCGFEGKG--------EI--------------W------------------------VEDILNLGVSP 204 (549)
Q Consensus 180 ---~~------~~i~f~~~~--------~l--------------~------------------------~~~~l~~~V~~ 204 (549)
.. ....++... .+ . .+....+.+++
T Consensus 85 ~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 164 (538)
T 2aqj_A 85 VNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHAWHFDA 164 (538)
T ss_dssp ESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCEEEECH
T ss_pred cCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCccEEEeH
Confidence 00 000000000 00 0 00112467899
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE--EEEEEcCCcEEEcCEEEEccCCChHHHH-HhcCCCC------CCc
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPVVK-QIRSGRK------PDG 275 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~dG~~i~ArlVI~ADG~~S~vrr-ql~~~~~------~~~ 275 (549)
..|.+.|.+.+.+.|++++.+ +|+++..++++ +.|.+++|++++||+||+|||.+|.+++ .++.+.. +..
T Consensus 165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~~~~~~~~~~~ 243 (538)
T 2aqj_A 165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPFIDMSDYLLCD 243 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCEEECTTTCCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCccccccccccc
Confidence 999999999999999999999 89999886664 4677778888999999999999999854 3443310 011
Q ss_pred eeeEEeEeeecc-CCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccCCCCCcccHHHHHHHHHHhC
Q 008915 276 VCLVVGSCARGF-KDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLM 354 (549)
Q Consensus 276 ~~~~vg~~~~g~-~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~~~~~~~~L~~l~~~~~~~l 354 (549)
.+..+....... +........ . .. ..+++| .+|..++ ....+.+...........+.+.+++...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~-~---~~-----~~g~~~-~~p~~~~----~~~g~v~~~~~~~~~~~~~~l~~~~~~~ 309 (538)
T 2aqj_A 244 SAVASAVPNDDARDGVEPYTSS-I---AM-----NSGWTW-KIPMLGR----FGSGYVFSSHFTSRDQATADFLKLWGLS 309 (538)
T ss_dssp EEEEEEEECCHHHHCCCSSEEE-E---EC-----SSEEEE-EEEETTE----EEEEEEECTTTSCHHHHHHHHHHHHTCC
T ss_pred eEEEEecccCCcccCCCCceee-e---ec-----CCceEE-EecCCCc----eEEEEEEcCCCCChHHHHHHHHHHhcCC
Confidence 111111100000 000000000 0 11 246888 7898753 2222223221111123334444443221
Q ss_pred cccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 008915 355 PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 422 (549)
Q Consensus 355 p~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lrd~~~La~~i 422 (549)
| +.+... ++.......++..+|++|||||||.++|++|+|+++++.|+..|++.|
T Consensus 310 ~------~~~~~~-------~~~~~~~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L 364 (538)
T 2aqj_A 310 D------NQPLNQ-------IKFRVGRNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHF 364 (538)
T ss_dssp T------TCCCEE-------EECCCEEESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTC
T ss_pred C------CCCceE-------EeeccccccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHh
Confidence 1 111111 222211223567799999999999999999999999999988777654
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-21 Score=203.05 Aligned_cols=293 Identities=12% Similarity=0.047 Sum_probs=157.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCC-ccccCCHHHHHHHHHcCCCCcccchhhhhhcc-CCCccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKF-NPNRCG 185 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~-r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~-~~~~i~ 185 (549)
.||+||||| +|+++|+.|+++ |++|+|+||.+.++.. ....++++.+..+...+++. +..+...+ ....+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYL----DAPERLNPQFLEDFK 76 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGS----SCGGGGCCEEECCEE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhh----hhhHHHhhccccceE
Confidence 389999976 599999999999 9999999998876422 22233333222111112220 11011101 000111
Q ss_pred cc-CCcccccc-ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 186 FE-GKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 186 f~-~~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+. .+..+... ....+.+++..|.+.|.+++.+.|++++.+++|+++... .+++||+||+|||.+|.
T Consensus 77 ~~~~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S~- 144 (381)
T 3c4a_A 77 LVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNHK- 144 (381)
T ss_dssp EEESSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGGG-
T ss_pred EEeCCeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCch-
Confidence 11 11111110 111246899999999999999889999999999887431 13689999999999999
Q ss_pred HHHhcC--CCCCCceeeEEeEeeeccC-CCceeeeeecCCcccccCCCCceeEE-EEecCCCCCccceEEEEEccC----
Q 008915 264 VKQIRS--GRKPDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFW-EAFPAGSGPLDRTTYMFTYID---- 335 (549)
Q Consensus 264 rrql~~--~~~~~~~~~~vg~~~~g~~-~~~~~ei~~~~~~~~~~~~~~~~~~W-~~fP~~~g~~~~~~~l~~~~~---- 335 (549)
|+++.. +...... .......+.. ..+.....+. .. ..+++| ..||.+++ ...+++...+
T Consensus 145 R~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~-----~~g~~~~~~~p~~~~---~~~~~~~~~~~~~~ 211 (381)
T 3c4a_A 145 TAHFTEALVPQVDYG--RNKYIWYGTSQLFDQMNLVFR---TH-----GKDIFIAHAYKYSDT---MSTFIVECSEETYA 211 (381)
T ss_dssp TCCSSGGGCCCCEEE--EEEEEEEEESSCCSSEEEEEE---EE-----TTEEEEEEEEECSSS---CEEEEEEECHHHHH
T ss_pred HHhhhhhcCCCcccC--CccEEEEecCCCCCcceeeEe---eC-----CCcEEEEEEEEecCC---eEEEEEECCccccc
Confidence 877631 1111111 1111111211 1111111111 01 234443 46888765 2333322211
Q ss_pred ---CCC-CcccHHHHHHH-HHHhCcccccccCCceeEeeeeeeeecccc-CCCCCccCCcEEEeCCCCCCCCCCCCCchh
Q 008915 336 ---PQA-GSPKLEELLER-YWDLMPEYQGVTLDNLEIQRVIYGIFPTYR-DSPLPAAFNRILQFGDASGIQSPVSFGGFG 409 (549)
Q Consensus 336 ---~~~-~~~~L~~l~~~-~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~-~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g 409 (549)
... ......+.+.+ |....|..+-+ +...+ .+|.+. ....++..+|++|||||||.++|++|||+|
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~--~~~~~------~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~ 283 (381)
T 3c4a_A 212 RARLGEMSEEASAEYVAKVFQAELGGHGLV--SQPGL------GWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTT 283 (381)
T ss_dssp HTTSSSSCHHHHHHHHHHHTHHHHTTCCCB--CCTTT------CSEEEEECCCSCSEETTEEECGGGTCCCCGGGCCHHH
T ss_pred cCCcccCChHHHHHHHHHHhcccCCCchhh--cCCCc------ceeeeccccCCCcccCCEEEEEccccccCCCccccHH
Confidence 000 11122222332 22222332111 11100 122221 123356779999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcCc
Q 008915 410 SLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGD 447 (549)
Q Consensus 410 ~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~d 447 (549)
++++|+..|++.|..+ + + ....|+.|++...
T Consensus 284 ~al~Da~~La~~L~~~---~--~--~~~aL~~Y~~~r~ 314 (381)
T 3c4a_A 284 MAVVVAQLLVKALCTE---D--G--VPAALKRFEERAL 314 (381)
T ss_dssp HHHHHHHHHHHHHHHS---S--S--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---c--c--HHHHHHHHHHHHH
Confidence 9999999999988763 2 1 2345789995443
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=183.29 Aligned_cols=299 Identities=14% Similarity=0.131 Sum_probs=154.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC--Ccc---ccCCHHHHHHHHHcCC--CCcc--cchhhhhhc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR--EQE---WNISRKELLELVESGI--LVED--DIDEATATK 178 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~--~r~---~~IS~~~l~~L~~lGl--~~~~--eie~~i~~~ 178 (549)
..+||+||||| +|+++|+.|+++|++|+||||.+.+.. .+. ..+....+..+..+|+ |... .++......
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 100 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNEWPSEEFGYFGHYYYV 100 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTCCCSCHHHHCEEEEEEEE
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcChhhhhhhcccccceeEEE
Confidence 35899999976 599999999999999999999874321 111 1234556667777765 3210 000000000
Q ss_pred cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCc-eEEEEEEECCEEEEEEcCCcEEEcCEEEEcc
Q 008915 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGY-SVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 179 ~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t-~v~~i~~~~dgv~V~~~dG~~i~ArlVI~AD 257 (549)
..+..+.|.+ .+ ....+.|++..+...|.+++.+.|++++... ++.++ +....++++||+||
T Consensus 101 ~~~~~~~~~~--~~---~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l------------~~~~~~ad~VV~Ad 163 (430)
T 3ihm_A 101 GGPQPMRFYG--DL---KAPSRAVDYRLYQPMLMRALEARGGKFCYDAVSAEDL------------EGLSEQYDLLVVCT 163 (430)
T ss_dssp CSSSCEEEEE--EE---EEEEBEECHHHHHHHHHHHHHHTTCEEEECCCCGGGH------------HHHHTTSSEEEECC
T ss_pred CCCCccccch--hc---CCcceeecHHHHHHHHHHHHHHcCCEEEEEecchhhh------------hhhcccCCEEEECC
Confidence 0111112211 11 1234678999999999999999999887632 11111 00113689999999
Q ss_pred CCChHHHHHhcCC---CCCCc--eeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecC--CCCCccceEEE
Q 008915 258 GNFSPVVKQIRSG---RKPDG--VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPA--GSGPLDRTTYM 330 (549)
Q Consensus 258 G~~S~vrrql~~~---~~~~~--~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~--~~g~~~~~~~l 330 (549)
|.+|.++. +... .+++. .... .....++...+...+.+. +.+ +.+.+| .+|. .++. ...++
T Consensus 164 G~~S~~~~-~~~~~~~~~~~~p~r~~~-~~~~~g~~~~~~~~~~~~---~~~----~~G~~~-~~p~~~~~g~--~~~~~ 231 (430)
T 3ihm_A 164 GKYALGKV-FEKQSENSPFEKPQRALC-VGLFKGIKEAPIRAVTMS---FSP----GHGELI-EIPTLSFNGM--STALV 231 (430)
T ss_dssp CCTTGGGG-SCBCGGGCCCSSCSSEEE-EEEEESBCCCSSCCEEEE---EET----TTEEEE-EEEEEETTEE--EEEEE
T ss_pred CCcchHHh-ccCCCCCCcccCCCeeEE-EEEEccCCCCCcCeeeee---ecC----CCcceE-EecccCCCcc--eEEEE
Confidence 99998763 2211 11111 1111 112222221111111110 000 123334 3443 2221 12222
Q ss_pred EEccCCCC----------Ccc--cHHHHHHHHHHhCcccccccCCcee--E----eee-eeeeeccccCCCCCccCCcEE
Q 008915 331 FTYIDPQA----------GSP--KLEELLERYWDLMPEYQGVTLDNLE--I----QRV-IYGIFPTYRDSPLPAAFNRIL 391 (549)
Q Consensus 331 ~~~~~~~~----------~~~--~L~~l~~~~~~~lp~~~~~~l~~~~--~----~r~-~~g~~P~~~~~~~~~~~~rvl 391 (549)
+...+... ..+ .++++.+.|....|..... +.... . ... ...++|.......++..+|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (430)
T 3ihm_A 232 LENHIGSDLEVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAER-IDPAEFDLANSSLDILQGGVVPAFRDGHATLNNGKTI 310 (430)
T ss_dssp EEECTTSSSGGGGTSCTTTCHHHHHHHHHHHHHHHCHHHHTT-BCTTTCEESSSTTSEEEECCCCEEBCSEEECTTSCEE
T ss_pred EEecCCCcHHHhccccCCCCHHHHHHHHHHHHHHhCccHHHH-HhhchhccccCccceeecceeecccccccccCCCCEE
Confidence 22211100 011 1234444444445554332 22222 0 000 112345443323355678888
Q ss_pred E-eCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhh
Q 008915 392 Q-FGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK 444 (549)
Q Consensus 392 L-VGDAA~~v~Pltg~G~g~~lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~ 444 (549)
| +|||||.++|++|||+|.+++|+..|++.|... ++++ ..|..|+.
T Consensus 311 ll~GDAah~~~p~~g~G~~~a~~da~~l~~~l~~~---~~~~----~~~~~~~~ 357 (430)
T 3ihm_A 311 IGLGDIQATVDPVLGQGANMASYAAWILGEEILAH---SVYD----LRFSEHLE 357 (430)
T ss_dssp EECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHC---SCCS----HHHHHHHH
T ss_pred EEecCccccCCCchhhhHHHHHHHHHHHHHHHHhc---CCHH----HHHHHHHH
Confidence 8 999999999999999999999999999988764 3322 33567863
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=170.20 Aligned_cols=137 Identities=19% Similarity=0.138 Sum_probs=105.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.+||+||||| +|+++|..|+++|++|+||||.+..+..+..++++..++.|..+|++... .. |..
T Consensus 92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~-------~~-------~~~ 157 (497)
T 2bry_A 92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFY-------GR-------FCT 157 (497)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHC-------TT-------TTC
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCcccc-------cc-------ccc
Confidence 6999999976 59999999999999999999998766555567788888888887764210 01 110
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE---CCEEEEEE--c-CC--cEEEcCEEEEccCCC
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLL--A-EG--KILSSHLIIDAMGNF 260 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dgv~V~~--~-dG--~~i~ArlVI~ADG~~ 260 (549)
..+ ..+++..+.+.|.+.+.+.|++++.+++|+++..+ ++++.|++ . +| .+++||+||+|||.+
T Consensus 158 -~~~-------~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~ 229 (497)
T 2bry_A 158 -GTL-------DHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGK 229 (497)
T ss_dssp -TTC-------CEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTT
T ss_pred -ccc-------ccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCC
Confidence 011 23567788999999998889999999999999864 34667776 3 55 479999999999999
Q ss_pred hHHHHHhc
Q 008915 261 SPVVKQIR 268 (549)
Q Consensus 261 S~vrrql~ 268 (549)
|.+++..+
T Consensus 230 S~~r~~~~ 237 (497)
T 2bry_A 230 FVPEGFTI 237 (497)
T ss_dssp CCCTTCEE
T ss_pred cccccccc
Confidence 99886543
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-13 Score=139.98 Aligned_cols=70 Identities=23% Similarity=0.204 Sum_probs=60.7
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH-HHHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|.+++| +++|+.||.|+|..|. +.+.++..
T Consensus 159 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~~ 229 (382)
T 1ryi_A 159 VHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLN 229 (382)
T ss_dssp CBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCC
T ss_pred eEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcCCC
Confidence 4578899999999999999999999999999988878887877666 8999999999999987 77776543
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-12 Score=131.70 Aligned_cols=71 Identities=8% Similarity=-0.023 Sum_probs=59.7
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCCh-HHHHHhcCCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFS-PVVKQIRSGR 271 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S-~vrrql~~~~ 271 (549)
..+++..+.+.|.+++.+.|++++.+++|+++..+++. +.|.+++| +++||.||.|+|..| .+++.++...
T Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~~ 241 (405)
T 2gag_B 169 GIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFEL 241 (405)
T ss_dssp BBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCCC
T ss_pred ccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCCCC
Confidence 45788899999999999999999999999999887665 45777667 799999999999999 5777776543
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-11 Score=125.39 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=60.5
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChH-HHHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
..+++..+.+.|.+++.+.|++++.+++|+++..++++++ |.+.+| +++||.||.|+|..|. +.+.++..
T Consensus 144 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~ 215 (382)
T 1y56_B 144 GKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIK 215 (382)
T ss_dssp CEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCC
T ss_pred eeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCC
Confidence 3578999999999999999999999999999998888877 887666 7999999999999994 66666644
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.6e-11 Score=123.92 Aligned_cols=68 Identities=9% Similarity=0.180 Sum_probs=59.1
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh-HHHHHhcC
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS-PVVKQIRS 269 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S-~vrrql~~ 269 (549)
.+++..+.+.|.+++.+.|++++.+++|+++..++++++|.++++ +++|+.||.|+|.+| .++++++.
T Consensus 149 ~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~ 217 (397)
T 2oln_A 149 TIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYTNDLLEPLGA 217 (397)
T ss_dssp EEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGHHHHHGGGTC
T ss_pred EEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcChHHHhhhcCC
Confidence 578888999999999999999999999999999888888877555 799999999999995 47777764
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-10 Score=126.73 Aligned_cols=202 Identities=14% Similarity=0.146 Sum_probs=112.8
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc---CCc--EEEcCEEEEccCCChH-HHHH-hcCCCCC
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSHLIIDAMGNFSP-VVKQ-IRSGRKP 273 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---dG~--~i~ArlVI~ADG~~S~-vrrq-l~~~~~~ 273 (549)
.+++..+...|.+.+.+.|++++.+++|+++..+++.+.|.+. +|+ +++||.||.|+|.+|. +.++ ++.....
T Consensus 145 ~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~~ 224 (501)
T 2qcu_A 145 WVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPY 224 (501)
T ss_dssp EECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCCSS
T ss_pred EEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCccc
Confidence 4799999999999999999999999999999988876667763 565 7999999999999997 4444 5432111
Q ss_pred CceeeEEeEee--eccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEccC--------CCCCcccH
Q 008915 274 DGVCLVVGSCA--RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID--------PQAGSPKL 343 (549)
Q Consensus 274 ~~~~~~vg~~~--~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~~--------~~~~~~~L 343 (549)
.+.++-|... ........ .+++. .. ....+| ++|..++ ...+.+... ........
T Consensus 225 -~i~p~rG~~~~~~~~~~~~~-~~~~~---~~-----dg~~~~-~~P~~~g----~~~iG~t~~~~~~~~~~~~~~~~~~ 289 (501)
T 2qcu_A 225 -GIRLIKGSHIVVPRVHTQKQ-AYILQ---NE-----DKRIVF-VIPWMDE----FSIIGTTDVEYKGDPKAVKIEESEI 289 (501)
T ss_dssp -CBCCEEEEEEEEECSSSCSC-EEEEE---CT-----TSCEEE-EEEETTT----EEEEECCCEECCSCGGGCCCCHHHH
T ss_pred -ccccceeEEEEECCCCCCce-EEEee---cC-----CCCEEE-EEEcCCC----cEEEcCCCCCCCCCcCCCCCCHHHH
Confidence 1222212111 11001111 11111 00 123344 6776644 223322211 01111245
Q ss_pred HHHHHHHHHhCc-ccccccCCceeEeeeeeeeeccccCCC---CCccCCcEEE--eCCCCCCCCCCCCCchhhHHHHHHH
Q 008915 344 EELLERYWDLMP-EYQGVTLDNLEIQRVIYGIFPTYRDSP---LPAAFNRILQ--FGDASGIQSPVSFGGFGSLTRHLGR 417 (549)
Q Consensus 344 ~~l~~~~~~~lp-~~~~~~l~~~~~~r~~~g~~P~~~~~~---~~~~~~rvlL--VGDAA~~v~Pltg~G~g~~lrd~~~ 417 (549)
+.+++...+.+| .+.. ..+.+.-.|..|...... .+...+.++. .+|..+.+-.++|+|+-.. ..
T Consensus 290 ~~l~~~~~~~~p~~l~~-----~~v~~~~aG~Rp~~~d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~Gg~~t~~----~~ 360 (501)
T 2qcu_A 290 NYLLNVYNTHFKKQLSR-----DDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTY----RK 360 (501)
T ss_dssp HHHHHHHHHHBSSCCCG-----GGCCEEEEEEECCBCCCCSSGGGSCCCCEEEEEEETTEEEEEEEECCCGGGH----HH
T ss_pred HHHHHHHHHhcCCCCCc-----ccEEEEEEEEeeecCCCCCccccCcCceEEEecccCCCCCeEEEeCccccch----HH
Confidence 566666666777 4432 222333346677654221 1334567777 6776666667787775443 23
Q ss_pred HHHHHHHHH
Q 008915 418 LSTGVYEAV 426 (549)
Q Consensus 418 La~~i~~Al 426 (549)
+|+.+...+
T Consensus 361 ~Ae~~~~~~ 369 (501)
T 2qcu_A 361 LAEHALEKL 369 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455444444
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.5e-11 Score=121.90 Aligned_cols=67 Identities=12% Similarity=0.188 Sum_probs=57.3
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH-HHHHhc
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIR 268 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~-vrrql~ 268 (549)
.+++..+.+.|.+++++.|++++.+++|+++..+++++.|.+++| +++|+.||.|+|..|. +...++
T Consensus 146 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~g 213 (389)
T 2gf3_A 146 VLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLN 213 (389)
T ss_dssp EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGT
T ss_pred EEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHHHHhhhhc
Confidence 467889999999999999999999999999998888888887555 7999999999999986 444444
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-11 Score=123.22 Aligned_cols=71 Identities=17% Similarity=0.086 Sum_probs=61.4
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCC--cEEEcCEEEEccCCChH-HHHHh-cCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG--KILSSHLIIDAMGNFSP-VVKQI-RSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG--~~i~ArlVI~ADG~~S~-vrrql-~~~ 270 (549)
..+++..+.+.|.+++++.|++++++++|+++..++++ +.|.+++| .+++||.||.|+|.+|. +.+++ +..
T Consensus 145 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~ 220 (369)
T 3dme_A 145 GIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIP 220 (369)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSC
T ss_pred EEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCC
Confidence 35789999999999999999999999999999988776 88888777 48999999999999994 67777 553
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-11 Score=125.71 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=57.8
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCc---eEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGY---SVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t---~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+++..+.+.|.+++++.|+++++++ +|+++..++++++ |.+.+|++++|+.||.|+|.+|.
T Consensus 156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~ 222 (438)
T 3dje_A 156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG 222 (438)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence 457888999999999999999999999 9999999888888 88888888999999999999985
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=131.54 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=97.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCc-----c-ccCCH-HHH-HHHHHcCCCCcccchhhhhhccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ-----E-WNISR-KEL-LELVESGILVEDDIDEATATKFN 180 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r-----~-~~IS~-~~l-~~L~~lGl~~~~eie~~i~~~~~ 180 (549)
+||||||||| +|+++|+.|+++|++|+||||.+.++.+- . .+++. ... ..+..++.... -....+ ..+.
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~ 103 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGR-FLYSAF-SIFN 103 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGG-GGHHHH-HHSC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChH-HHHHHH-HhcC
Confidence 6999999976 69999999999999999999987654210 0 01100 001 11111111000 000000 0010
Q ss_pred CC-cccc-cC-Ccccccccccccee----CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCE
Q 008915 181 PN-RCGF-EG-KGEIWVEDILNLGV----SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHL 252 (549)
Q Consensus 181 ~~-~i~f-~~-~~~l~~~~~l~~~V----~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~Arl 252 (549)
.. .+.+ .. +.++.. ...+..+ ....+.+.|.+++.+.|++++.+++|+++..++++ +.|.+.+|++++|+.
T Consensus 104 ~~~~~~~~~~~G~~~~~-~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~ 182 (447)
T 2i0z_A 104 NEDIITFFENLGVKLKE-EDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH 182 (447)
T ss_dssp HHHHHHHHHHTTCCEEE-CGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC
T ss_pred HHHHHHHHHhcCCceEE-eeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCE
Confidence 00 0000 00 000000 0011111 35678889999999999999999999999988777 668887887899999
Q ss_pred EEEccCCCh-----------HHHHHhcCC
Q 008915 253 IIDAMGNFS-----------PVVKQIRSG 270 (549)
Q Consensus 253 VI~ADG~~S-----------~vrrql~~~ 270 (549)
||.|+|..| .++++++..
T Consensus 183 VVlAtGg~s~~~~g~tG~g~~la~~~G~~ 211 (447)
T 2i0z_A 183 VVIAVGGKSVPQTGSTGDGYAWAEKAGHT 211 (447)
T ss_dssp EEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred EEECCCCCcCCCCCCCcHHHHHHHHCCCC
Confidence 999999999 888888764
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-11 Score=127.75 Aligned_cols=150 Identities=15% Similarity=0.220 Sum_probs=95.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCc------cccCC-----HHH---------HHHHHHcCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ------EWNIS-----RKE---------LLELVESGILV 167 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r------~~~IS-----~~~---------l~~L~~lGl~~ 167 (549)
.+||||||||| +|+++|+.|+++|++|+||||.+.++.+- ..+++ ... ...+.....
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~-- 103 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRP-- 103 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCH--
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCH--
Confidence 36999999976 59999999999999999999998654210 00000 000 000000000
Q ss_pred cccchhhhhhccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcE
Q 008915 168 EDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKI 247 (549)
Q Consensus 168 ~~eie~~i~~~~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~ 247 (549)
.++..... +. .+.+.... ....+ ...++..+.+.|.+.+.+.|++++.+++|+++..+++++.|.+.+| +
T Consensus 104 -~~~~~~~~-~~---Gi~~~~~~---~g~~~-~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~ 173 (417)
T 3v76_A 104 -QDFVALVE-RH---GIGWHEKT---LGQLF-CDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-T 173 (417)
T ss_dssp -HHHHHHHH-HT---TCCEEECS---TTEEE-ESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-E
T ss_pred -HHHHHHHH-Hc---CCCcEEee---CCEEe-eCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-E
Confidence 00000000 00 00000000 00000 1245678889999999999999999999999999999999998777 8
Q ss_pred EEcCEEEEccCCCh-----------HHHHHhcCC
Q 008915 248 LSSHLIIDAMGNFS-----------PVVKQIRSG 270 (549)
Q Consensus 248 i~ArlVI~ADG~~S-----------~vrrql~~~ 270 (549)
++||.||.|+|..| .++++++..
T Consensus 174 i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~~ 207 (417)
T 3v76_A 174 VDAASLVVASGGKSIPKMGATGLAYRIAEQFGLP 207 (417)
T ss_dssp EEESEEEECCCCSSCGGGTCCCHHHHHHHHTTCC
T ss_pred EEeeEEEECCCCccCCCCCCCcHHHHHHHHCCCC
Confidence 99999999999999 577777654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-10 Score=130.46 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=56.9
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc-EEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~-~i~ArlVI~ADG~~S~ 262 (549)
..+++..+.+.|.+++.+.|++++++++|+++..+++++.|.+.+|. +++|+.||.|+|..|.
T Consensus 407 g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~ 470 (689)
T 3pvc_A 407 GWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP 470 (689)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence 45789999999999999999999999999999998888988887877 8999999999999986
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.6e-11 Score=129.01 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChH
Q 008915 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
....+.+.|.+.+.+.|++++.+++|+++..+++.+. |++++|++++|++||.|+|+.|.
T Consensus 218 ~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 218 KLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp HHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred hHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence 3456778899999889999999999999988777654 88888889999999999999995
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-09 Score=116.24 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=58.1
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcC---C--cEEEcCEEEEccCCChH-HHHHhcCC
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~d---G--~~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
.+++..+...|.+.+.+.|++++.+++|+++..+++++. |.+.+ | .+++||.||.|+|.+|. +++.++..
T Consensus 166 ~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~ 242 (561)
T 3da1_A 166 RTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSK 242 (561)
T ss_dssp ECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCC
T ss_pred eEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCC
Confidence 588999999999999999999999999999999888653 55543 3 37999999999999994 66666543
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=118.54 Aligned_cols=70 Identities=10% Similarity=0.090 Sum_probs=61.8
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH-HHHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~-vrrql~~~ 270 (549)
..+++..+.+.|.+.+++.|++++++++|+++..+++++.|++++| +++|+.||.|+|.+|. +.+.++..
T Consensus 149 ~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~ 219 (381)
T 3nyc_A 149 ADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVR 219 (381)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHTCC
T ss_pred ceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCC
Confidence 3589999999999999999999999999999999999988888766 8999999999999995 66777653
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=128.91 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=58.3
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+++..+.+.|.+++.+.|++++++++|+++..+++++.|++.+|.+++|+.||.|+|..|.
T Consensus 412 g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~ 474 (676)
T 3ps9_A 412 GWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS 474 (676)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred eeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence 457899999999999999999999999999999999999998888888999999999999986
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-10 Score=117.46 Aligned_cols=62 Identities=13% Similarity=0.061 Sum_probs=54.9
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|++++| +++|+.||.|+|.+|.
T Consensus 144 g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~ 205 (372)
T 2uzz_A 144 GFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVK 205 (372)
T ss_dssp EEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGG
T ss_pred cEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHH
Confidence 3478889999999999999999999999999998888888888666 5999999999999884
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-10 Score=104.27 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=88.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.|||+||||| +|+.+|..|++.|.+|+|||+.+..-. +. ..+. .+ .+
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~-~~-------------------~~~~-----~~-------~~ 48 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVK-GV-------------------SRVP-----NY-------PG 48 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTT-TC-------------------SCCC-----CS-------TT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccc-Cc-------------------hhhh-----cc-------CC
Confidence 3899999976 599999999999999999998762100 00 0000 00 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHHhc
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrql~ 268 (549)
.+ ..++...+.+.+.+.+.+.|++++.+ +|+++..+++++.|++++| +++||.||.|+|..|.+++.++
T Consensus 49 -----~~----~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g 117 (180)
T 2ywl_A 49 -----LL----DEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLG 117 (180)
T ss_dssp -----CT----TCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHT
T ss_pred -----Cc----CCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCccccCC
Confidence 00 11345678888899998999999999 9999988878888888778 8999999999999998877775
Q ss_pred C
Q 008915 269 S 269 (549)
Q Consensus 269 ~ 269 (549)
.
T Consensus 118 ~ 118 (180)
T 2ywl_A 118 L 118 (180)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=118.90 Aligned_cols=131 Identities=21% Similarity=0.299 Sum_probs=86.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccc---------cCCHHHHHHHHHcCCCCcccchhhhhh
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEW---------NISRKELLELVESGILVEDDIDEATAT 177 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~---------~IS~~~l~~L~~lGl~~~~eie~~i~~ 177 (549)
+||||||||| +|+++|+.|+++ |++|+||||...++.. .| .+.+.....|.++|+...
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg-~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~--------- 148 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG-AWLGGQLFSAMVMRKPADVFLDEVGVPYE--------- 148 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTT-TTCCBTTCCCEEEETTTHHHHHHHTCCCE---------
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCc-cccCCccchhhhcchHHHHHHHHcCCccc---------
Confidence 6999999975 599999999997 9999999998765421 11 111223344444444210
Q ss_pred ccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECC--------------------
Q 008915 178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYEN-------------------- 236 (549)
Q Consensus 178 ~~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~d-------------------- 236 (549)
. ...+. ...+...+.+.|.+++.+ .|++++.++.++++..+++
T Consensus 149 ~----------~G~~~------~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~r 212 (344)
T 3jsk_A 149 D----------EGDYV------VVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVR 212 (344)
T ss_dssp E----------CSSEE------EESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEE
T ss_pred c----------cCCeE------EEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCce
Confidence 0 00001 011245667888888887 4889999999999987663
Q ss_pred --EEEEEE----cC--------CcEEEcCEEEEccCCChHHHHH
Q 008915 237 --AAVLLL----AE--------GKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 237 --gv~V~~----~d--------G~~i~ArlVI~ADG~~S~vrrq 266 (549)
++++.. .+ ..+|+|++||+|+|+.|++++.
T Consensus 213 V~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~ 256 (344)
T 3jsk_A 213 IAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAF 256 (344)
T ss_dssp EEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCH
T ss_pred EeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHH
Confidence 222321 12 2479999999999999996543
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=122.90 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=54.8
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEE---------EEEEECCEEEEEEcCCcEEEcCEEEEccCCCh-HHHH-Hhc
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVS---------SICTYENAAVLLLAEGKILSSHLIIDAMGNFS-PVVK-QIR 268 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~---------~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S-~vrr-ql~ 268 (549)
..+++..+.+.|.+++.+.|++++++++|+ ++..+++++.|.+.+| +++||.||.|+|.+| .+++ +++
T Consensus 167 g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g 245 (405)
T 3c4n_A 167 LTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGLG 245 (405)
T ss_dssp EEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHHC
T ss_pred EEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhcC
Confidence 357899999999999999999999999999 8877767776666555 799999999999999 6877 776
Q ss_pred CCC
Q 008915 269 SGR 271 (549)
Q Consensus 269 ~~~ 271 (549)
...
T Consensus 246 ~~~ 248 (405)
T 3c4n_A 246 LHT 248 (405)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-10 Score=112.91 Aligned_cols=131 Identities=17% Similarity=0.312 Sum_probs=86.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhC-CCcEEEEccCCCCCCCcccc---------CCHHHHHHHHHcCCCCcccchhhhhhc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATK 178 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~-GlrVlLIEr~~~~~~~r~~~---------IS~~~l~~L~~lGl~~~~eie~~i~~~ 178 (549)
+|||+||||| +|+++|..|+++ |++|+||||.+.++.. .|. +.....+.|.++|+.
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~-~~~~~~~~~~~~~~~~~~~~l~~~G~~------------ 105 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG-AWLGGQLFSAMIVRKPAHLFLDEIGVA------------ 105 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT-TTCCSTTCCCEEEETTTHHHHHHHTCC------------
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCc-eecCCcchHHHHcCcHHHHHHHHcCCC------------
Confidence 5999999976 599999999997 9999999998765421 111 000112222222221
Q ss_pred cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEE-EEEEc---------CC--
Q 008915 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLA---------EG-- 245 (549)
Q Consensus 179 ~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv-~V~~~---------dG-- 245 (549)
|..... +....+...+...|.+++.+ .|++++.+++|+++..+++.+ .|.+. +|
T Consensus 106 -------~~~~~~------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~ 172 (284)
T 1rp0_A 106 -------YDEQDT------YVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSC 172 (284)
T ss_dssp -------CEECSS------EEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSC
T ss_pred -------cccCCC------EEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCcccc
Confidence 100000 00112566778888888876 589999999999999887754 23331 22
Q ss_pred ---cEEEcCEEEEccCCChHHHHH
Q 008915 246 ---KILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 246 ---~~i~ArlVI~ADG~~S~vrrq 266 (549)
.+++||.||.|+|..|.++..
T Consensus 173 g~~~~i~ad~VV~AtG~~s~~~~~ 196 (284)
T 1rp0_A 173 MDPNVMEAKIVVSSCGHDGPFGAT 196 (284)
T ss_dssp CCCEEEEEEEEEECCCSSSTTTTH
T ss_pred CceEEEECCEEEECCCCchHHHHH
Confidence 579999999999999987643
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=6e-10 Score=117.83 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=92.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCC-----C-ccc-chhhhhhccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGIL-----V-EDD-IDEATATKFNP 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~-----~-~~e-ie~~i~~~~~~ 181 (549)
+||||||||| +|+++|+.|+++|++|+||||.+.++.+ +.++.+....+...+.. . ..+ +...+ ..+..
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~--~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ 80 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRK--ILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSAL-ARYTN 80 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH--HHHGGGGTCCCEESSCCGGGEECSCTTSTHHHH-HHSCH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchh--cEEcCCCeEEccCCccCHHHhccCCHHHHHHHH-HhCCH
Confidence 5999999976 5999999999999999999998765321 00000000000000000 0 000 00000 00000
Q ss_pred Cc-cccc-C-Ccccccccccccee---CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE----CCEEEEEEcCCcEEEcC
Q 008915 182 NR-CGFE-G-KGEIWVEDILNLGV---SPAKLIEIVKKRFISLGGVIFEGYSVSSICTY----ENAAVLLLAEGKILSSH 251 (549)
Q Consensus 182 ~~-i~f~-~-~~~l~~~~~l~~~V---~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~----~dgv~V~~~dG~~i~Ar 251 (549)
.. +.+. . +-++... ..+..+ ++..+.+.|.+.+++.|++++.+++|+++..+ ++++.|++++| +++|+
T Consensus 81 ~~~~~~~~~~Gi~~~~~-~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad 158 (401)
T 2gqf_A 81 WDFISLVAEQGITYHEK-ELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCK 158 (401)
T ss_dssp HHHHHHHHHTTCCEEEC-STTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEES
T ss_pred HHHHHHHHhCCCceEEC-cCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECC
Confidence 00 0000 0 0000000 001111 45678888999998899999999999999876 56788887666 79999
Q ss_pred EEEEccCCCh-----------HHHHHhcCC
Q 008915 252 LIIDAMGNFS-----------PVVKQIRSG 270 (549)
Q Consensus 252 lVI~ADG~~S-----------~vrrql~~~ 270 (549)
.||.|+|..| .++++++..
T Consensus 159 ~VVlAtG~~s~p~~g~~G~g~~la~~~G~~ 188 (401)
T 2gqf_A 159 NLIVATGGLSMPGLGATPFGYQIAEQFGIP 188 (401)
T ss_dssp EEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred EEEECCCCccCCCCCCChHHHHHHHHCCCC
Confidence 9999999999 677777654
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-08 Score=91.69 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=32.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
++||+||||| +|+++|..|+++|++|+|+||.+.++
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G 38 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG 38 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 5899999965 69999999999999999999988764
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-09 Score=109.30 Aligned_cols=129 Identities=14% Similarity=0.178 Sum_probs=88.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
+|||+||||| +|+++|..|+++|++|+|||+.+.++. .|.- .++...+... ..+ ..+.+
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg--~~~~------------~~~~~~~~~~--~~~----~~~~~ 62 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG--AWQH------------AWHSLHLFSP--AGW----SSIPG 62 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSG--GGGG------------SCTTCBCSSC--GGG----SCCSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC--cccC------------CCCCcEecCc--hhh----hhCCC
Confidence 5899999976 599999999999999999999876541 2210 0110000000 000 00100
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChH
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
...+.....-.++..+.+.|.+.+.+.|++++.+++|+++..+++.+. |++++| ++++|.||.|+|..|.
T Consensus 63 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~ 133 (357)
T 4a9w_A 63 ---WPMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGE 133 (357)
T ss_dssp ---SCCCCCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGG
T ss_pred ---CCCCCCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCC
Confidence 000000011234677888888888888999999999999999999988 888777 8999999999998773
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=118.85 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=91.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCc-----cccCCHHHHHHHHHcCCCCccc------------
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ-----EWNISRKELLELVESGILVEDD------------ 170 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r-----~~~IS~~~l~~L~~lGl~~~~e------------ 170 (549)
.+||||||||| +|+++|+.|+++|++|+||||.+.++..- ..+.... .....+|+.+..+
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~--~~~~~~g~~ds~~~~~~~~~~~~~~ 197 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGT--KQQTAHGVEDKVEWFIEDAMKGGRQ 197 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSC--HHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCC--HHHHHhCCCCCHHHHHHHHHHhcCC
Confidence 46999999976 59999999999999999999998765321 1111100 1122333321100
Q ss_pred ------chhhhh------hccCCCccccc-----CCcccccc-ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEE
Q 008915 171 ------IDEATA------TKFNPNRCGFE-----GKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSIC 232 (549)
Q Consensus 171 ------ie~~i~------~~~~~~~i~f~-----~~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~ 232 (549)
++.+.. ..+....+.|. ++...... ...+..+....+.+.|.+++.+.|++++.+++|+++.
T Consensus 198 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~ 277 (566)
T 1qo8_A 198 QNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLV 277 (566)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEE
T ss_pred CCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEE
Confidence 000000 00000001110 00000000 0000113466788999999999999999999999998
Q ss_pred EEC-CEE---EEEEcCCc--EEEcCEEEEccCCChHHHH
Q 008915 233 TYE-NAA---VLLLAEGK--ILSSHLIIDAMGNFSPVVK 265 (549)
Q Consensus 233 ~~~-dgv---~V~~~dG~--~i~ArlVI~ADG~~S~vrr 265 (549)
.++ +.+ ++...+|+ +++||.||.|+|..|..++
T Consensus 278 ~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~ 316 (566)
T 1qo8_A 278 VNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKE 316 (566)
T ss_dssp ECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHH
T ss_pred ECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccCHH
Confidence 877 543 33333665 6999999999999997644
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.9e-09 Score=102.82 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=84.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC-CCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~-~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+|||+||||| +|+.+|..|+++|++|+|||+... .+ .+ ..+ .++-+.. .. +..++.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G---~~-~~~-------~~~~~~~---~~-~~~~~~------- 60 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM---MP-FLP-------PKPPFPP---GS-LLERAY------- 60 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT---CC-SSC-------CCSCCCT---TC-HHHHHC-------
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC---cc-cCc-------cccccch---hh-HHhhhc-------
Confidence 5999999976 599999999999999999999732 11 00 000 0000000 00 000110
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEE-EEEEcCCcEEEcCEEEEccCCChHHHH
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVVK 265 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv-~V~~~dG~~i~ArlVI~ADG~~S~vrr 265 (549)
. ..+ .++..+.+.|.+.+.+. |++++ +++|+++..+++.+ .|.+++|++++||.||.|+|.+|..+.
T Consensus 61 d--------~~g--~~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~ 129 (232)
T 2cul_A 61 D--------PKD--ERVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARL 129 (232)
T ss_dssp C--------TTC--CCHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEE
T ss_pred c--------CCC--CCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhce
Confidence 0 001 16778889999999887 88888 57999999888875 477778888999999999999886554
Q ss_pred H
Q 008915 266 Q 266 (549)
Q Consensus 266 q 266 (549)
.
T Consensus 130 ~ 130 (232)
T 2cul_A 130 F 130 (232)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.6e-09 Score=120.30 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=58.4
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcCCcEEEcCEEEEccCCChHH-HHHhcCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPV-VKQIRSG 270 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~dG~~i~ArlVI~ADG~~S~v-rrql~~~ 270 (549)
..+++..+.+.|.+.+++.|++++++++|+++..+++++ .|.+++| +++|+.||.|+|.+|.. .+.++..
T Consensus 146 g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g~~ 217 (830)
T 1pj5_A 146 GLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMA 217 (830)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCC
T ss_pred ceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhCCC
Confidence 357899999999999999999999999999999888876 4666666 79999999999999963 4445443
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-09 Score=105.46 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=83.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCC-cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.|||+||||| +|+++|..|+++|+ +|+|||+....+. |..+ . .+ ..+ .
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~---~~~~----------~-----~~-----~~~-------~ 50 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQ---ITGS----------S-----EI-----ENY-------P 50 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCG---GGGC----------S-----CB-----CCS-------T
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcc---cccc----------c-----cc-----ccC-------C
Confidence 3899999975 58899999999999 9999999643221 1000 0 00 000 0
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
+ +...+++..+.+.+.+.+.+.|++++. ++++++..+++.+.|.+.+|++++++.||.|+|..+.
T Consensus 51 ~---------~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~ 115 (311)
T 2q0l_A 51 G---------VKEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK 115 (311)
T ss_dssp T---------CCSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred C---------CcccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC
Confidence 0 011356677888888888888999987 7999999888888888888889999999999997663
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-07 Score=102.05 Aligned_cols=68 Identities=13% Similarity=0.096 Sum_probs=54.3
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc---CCc--EEEcCEEEEccCCChH-HHHHhc
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSP-VVKQIR 268 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---dG~--~i~ArlVI~ADG~~S~-vrrql~ 268 (549)
.+++..+...|.+.+.+.|++++.+++|+++..+++.+. |.+. +|+ +++||.||.|+|.+|. +.+..+
T Consensus 184 ~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g 258 (571)
T 2rgh_A 184 RNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNF 258 (571)
T ss_dssp ECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCC
T ss_pred eEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhc
Confidence 478888888899999999999999999999998877643 5542 343 7999999999999985 444333
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-09 Score=109.33 Aligned_cols=132 Identities=22% Similarity=0.309 Sum_probs=85.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCcccc---------CCHHHHHHHHHcCCCCcccchhhhhh
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATAT 177 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~---------IS~~~l~~L~~lGl~~~~eie~~i~~ 177 (549)
+|||+||||| +|+++|..|+++ |++|+|+||...++.. .|. +.......|.++|+..
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg-~~~~g~~~~~~~~~~~~~~~L~~~Gv~~---------- 133 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG-SWLGGQLFSAMVMRKPAHLFLQELEIPY---------- 133 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT-TTCCGGGCCCEEEETTTHHHHHHTTCCC----------
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccc-ccccCcccchhhhhhHHHHHHHhhCccc----------
Confidence 6899999975 599999999998 9999999998876421 110 1111223333333321
Q ss_pred ccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEEC--C-------EEEEEEc----
Q 008915 178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYE--N-------AAVLLLA---- 243 (549)
Q Consensus 178 ~~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~--d-------gv~V~~~---- 243 (549)
.....++ ...+...+.+.|.+++.+. |++++.+++|+++..++ + ++++...
T Consensus 134 ---------~~~g~~~------~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~ 198 (326)
T 2gjc_A 134 ---------EDEGDYV------VVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQ 198 (326)
T ss_dssp ---------EECSSEE------EESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHT
T ss_pred ---------ccCCCeE------EEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecc
Confidence 0000111 1124456788888888875 88999999999998764 2 2333211
Q ss_pred --------CCcEEEc---------------CEEEEccCCChHHHHHh
Q 008915 244 --------EGKILSS---------------HLIIDAMGNFSPVVKQI 267 (549)
Q Consensus 244 --------dG~~i~A---------------rlVI~ADG~~S~vrrql 267 (549)
++.++.| ++||+|+|+.|++.+.+
T Consensus 199 ~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~ 245 (326)
T 2gjc_A 199 AHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFC 245 (326)
T ss_dssp C---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHH
T ss_pred cccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHH
Confidence 2357999 99999999999987654
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-09 Score=118.12 Aligned_cols=145 Identities=16% Similarity=0.147 Sum_probs=90.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCCCCcc-cc---CC-HHHHHHHHHcCCCCcccchhhhh-hccC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQE-WN---IS-RKELLELVESGILVEDDIDEATA-TKFN 180 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~~~r~-~~---IS-~~~l~~L~~lGl~~~~eie~~i~-~~~~ 180 (549)
.+||||||||| +|+++|+.||+.|.+|+|||+.. ..+...+ .+ +. ..-+..+..++-. ...... ....
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~----~~~~~d~~gi~ 95 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGE----MGKAIDATGIQ 95 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCS----HHHHHHHHEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccH----HHHHHHhcCCc
Confidence 36999999976 69999999999999999999984 1221111 11 11 1122233333211 000000 0000
Q ss_pred CCcccccCCcc-ccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEcc
Q 008915 181 PNRCGFEGKGE-IWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAM 257 (549)
Q Consensus 181 ~~~i~f~~~~~-l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~AD 257 (549)
...+. ....+ .+ .....+|+..+.+.|.+.+.+. |++++. ..|+++..+++.+. |.+.+|.+++|+.||.|+
T Consensus 96 f~~l~-~~kgpav~---~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLAT 170 (641)
T 3cp8_A 96 FRMLN-RSKGPAMH---SPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILAC 170 (641)
T ss_dssp EEEEC-SSSCTTTC---EEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECC
T ss_pred hhhcc-cccCcccc---chhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECc
Confidence 00000 00111 11 1124589989999999998874 888865 48999988888876 778788899999999999
Q ss_pred CCChH
Q 008915 258 GNFSP 262 (549)
Q Consensus 258 G~~S~ 262 (549)
|.+|.
T Consensus 171 G~~s~ 175 (641)
T 3cp8_A 171 GTFLN 175 (641)
T ss_dssp TTCBT
T ss_pred CCCCC
Confidence 98754
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.5e-09 Score=114.23 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=88.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCc-----cccCCHHHHHHHHHcCCCCccc-------------
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ-----EWNISRKELLELVESGILVEDD------------- 170 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r-----~~~IS~~~l~~L~~lGl~~~~e------------- 170 (549)
++|||||||| +|+++|+.|+++|++|+||||.+..+..- ..+..... ...++|+.+..+
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~--~~~~~g~~ds~~~~~~~~~~~g~~~ 203 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTD--QQKAKKITDSPELMFEDTMKGGQNI 203 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCH--HHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCH--HHHHhCCCCCHHHHHHHHHHhcCCC
Confidence 6999999975 69999999999999999999998764221 11111111 122333321100
Q ss_pred -----chhhhh-----hcc-CCCccccc-----CCcccccc-ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE
Q 008915 171 -----IDEATA-----TKF-NPNRCGFE-----GKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT 233 (549)
Q Consensus 171 -----ie~~i~-----~~~-~~~~i~f~-----~~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~ 233 (549)
++.+.. .++ ....+.|. ++...... ...+-......+.+.|.+++.+.|++++.+++|+++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~ 283 (571)
T 1y0p_A 204 NDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLK 283 (571)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEE
T ss_pred CCHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEE
Confidence 000000 000 00001110 00000000 00000133567889999999999999999999999988
Q ss_pred EC-CE---EEEEEcCCc--EEEcCEEEEccCCChHH
Q 008915 234 YE-NA---AVLLLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 234 ~~-dg---v~V~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
++ +. +++...+|+ +++||.||.|+|..|..
T Consensus 284 ~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n 319 (571)
T 1y0p_A 284 DDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKN 319 (571)
T ss_dssp CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTC
T ss_pred cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcccC
Confidence 76 43 333333565 79999999999998863
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.92 E-value=6.3e-09 Score=115.62 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=90.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCCCCcc----ccCCH-HHHHHHHHcCCCCcccchhhhh-hccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQE----WNISR-KELLELVESGILVEDDIDEATA-TKFNP 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~~~r~----~~IS~-~~l~~L~~lGl~~~~eie~~i~-~~~~~ 181 (549)
+||||||||| +|+++|+.||+.|++|+|||+.. ..+...+ ..+.. .-+..+..+|-. +..... .....
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~----~~~~~d~~gi~f 103 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGL----MAKAIDQAGIQF 103 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCS----HHHHHHHHEEEE
T ss_pred cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccH----HHHHhhhcccch
Confidence 6999999976 69999999999999999999974 2221111 01222 223344444421 111100 00000
Q ss_pred CcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEE-EEEEcCCcEEEcCEEEEccCC
Q 008915 182 NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 182 ~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv-~V~~~dG~~i~ArlVI~ADG~ 259 (549)
..+....+...+ .+...+|+..+.+.|.+.+.+ .|++++ +++|+++..+++.+ .|.+.+|.+++|+.||.|+|.
T Consensus 104 ~~l~~~kgpav~---~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt 179 (651)
T 3ces_A 104 RILNASKGPAVR---ATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGT 179 (651)
T ss_dssp EEESTTSCGGGC---EEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCST
T ss_pred hhhhcccCcccc---cchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCC
Confidence 000000001111 112458888899999999987 588885 57999998877765 477778888999999999999
Q ss_pred Ch
Q 008915 260 FS 261 (549)
Q Consensus 260 ~S 261 (549)
+|
T Consensus 180 ~s 181 (651)
T 3ces_A 180 FL 181 (651)
T ss_dssp TT
T ss_pred Cc
Confidence 76
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.3e-09 Score=107.35 Aligned_cols=119 Identities=16% Similarity=0.161 Sum_probs=85.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
+|||+||||| +|+++|..|+++|++|+|||+.+..+. .| . .+ .+... .+. +
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg--~~-------~---~~--~~~~~-------~~~-----~-- 65 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGG--QL-------A---AL--YPEKH-------IYD-----V-- 65 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH--HH-------H---HT--CTTSE-------ECC-----S--
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCC--cc-------c---cc--CCCcc-------ccc-----C--
Confidence 6999999975 588999999999999999999865431 01 0 00 00000 000 0
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEEcCEEEEccCCChHHH
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~ArlVI~ADG~~S~vr 264 (549)
. ..+ .+++..+.+.|.+.+.+.+++++.+++|+++..+++ .+.|.+.+|+++++|.||.|+|..|...
T Consensus 66 -~--~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~ 134 (360)
T 3ab1_A 66 -A--GFP-----EVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEP 134 (360)
T ss_dssp -T--TCS-----SEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCB
T ss_pred -C--CCC-----CCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCC
Confidence 0 000 145667788888888888999999999999988765 6888888888999999999999987433
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=9e-09 Score=114.00 Aligned_cols=145 Identities=21% Similarity=0.147 Sum_probs=91.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC-CCCCCccc----cCCH-HHHHHHHHcCCCCcccchhhhh-hccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEW----NISR-KELLELVESGILVEDDIDEATA-TKFNP 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~-~~~~~r~~----~IS~-~~l~~L~~lGl~~~~eie~~i~-~~~~~ 181 (549)
+||||||||| +|+.+|+.||+.|++|+|||+.. ..+...+. .+.. .-...+..+|-. +..... .....
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~----~~~~~d~~gi~f 102 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGE----MGKAIDQTGIQF 102 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCS----HHHHHHHHEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhH----HHHHhhhcccce
Confidence 6999999976 69999999999999999999974 22211110 1222 223444455421 011110 00000
Q ss_pred CcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCC
Q 008915 182 NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 182 ~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~ 259 (549)
..+.-..+...+. +...+|+..+.+.|.+.+.+ .|++++ +++|+++..+++.+. |.+.+|.+++|+.||.|+|.
T Consensus 103 ~~l~~~kGpav~~---~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~ 178 (637)
T 2zxi_A 103 KMLNTRKGKAVQS---PRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGT 178 (637)
T ss_dssp EEESTTSCGGGCE---EEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTT
T ss_pred eecccccCccccc---hhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCC
Confidence 0000000011111 12457888899999999987 488885 579999988777654 77778889999999999998
Q ss_pred ChH
Q 008915 260 FSP 262 (549)
Q Consensus 260 ~S~ 262 (549)
.|.
T Consensus 179 ~s~ 181 (637)
T 2zxi_A 179 FLN 181 (637)
T ss_dssp CBT
T ss_pred Ccc
Confidence 753
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=104.22 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=85.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.|||+||||| +|+++|..|+++|++|+|||+.+..+. .| . . ..+. ..+ ..
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg--~~-------~---~--~~~~-------------~~~--~~ 55 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGG--QL-------T---A--LYPE-------------KYI--YD 55 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCH--HH-------H---H--TCTT-------------SEE--CC
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC--ee-------e---c--cCCC-------------cee--ec
Confidence 6999999975 588999999999999999999865431 01 0 0 0000 000 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
... .+ .+++..+.+.|.+.+.+.+.+++.+++|++++.+++.+.|.+++|.++++|.||.|+|..|..
T Consensus 56 ~~~--~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~ 123 (335)
T 2zbw_A 56 VAG--FP-----KVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFE 123 (335)
T ss_dssp STT--CS-----SEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEE
T ss_pred cCC--CC-----CCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCC
Confidence 000 00 134566777888888888999999999999998888888888788889999999999997643
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.4e-09 Score=111.28 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=58.0
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE---------------ECCEE-EEEEcCCcEE--EcCEEEEccCCCh
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT---------------YENAA-VLLLAEGKIL--SSHLIIDAMGNFS 261 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~---------------~~dgv-~V~~~dG~~i--~ArlVI~ADG~~S 261 (549)
..+++..+.+.|.+++.+.|++++.+++|+++.. +++++ .|.+.+| ++ +|+.||.|+|.+|
T Consensus 176 ~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s 254 (448)
T 3axb_A 176 GFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS 254 (448)
T ss_dssp EECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred eEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence 3478889999999999999999999999999987 45554 4677667 68 9999999999999
Q ss_pred H-HHHHhcCC
Q 008915 262 P-VVKQIRSG 270 (549)
Q Consensus 262 ~-vrrql~~~ 270 (549)
. +.+.++..
T Consensus 255 ~~l~~~~g~~ 264 (448)
T 3axb_A 255 NRLLNPLGID 264 (448)
T ss_dssp HHHHGGGTCC
T ss_pred HHHHHHcCCC
Confidence 7 77766543
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-08 Score=107.96 Aligned_cols=145 Identities=14% Similarity=0.062 Sum_probs=87.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCC--cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCc------ccch------hh
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVE------DDID------EA 174 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~------~eie------~~ 174 (549)
.+||+||||| +|+++|..|++.|+ +|+|+||...++. .|...... -..+++... ..+. ..
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG--~~~~~~~~---~~~~~ip~~~~~~~~~~~~~g~~~~~~ 80 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG--VWNYTSTL---SNKLPVPSTNPILTTEPIVGPAALPVY 80 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSST--TCSCCSCC---CSCCCSSBCCTTCCCCCBCCSSSCCBC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCC--eecCCCCC---CcccccccccccccccccccccccCCc
Confidence 5899999976 59999999999999 9999999865431 12211000 000000000 0000 00
Q ss_pred hhhccCCC-------cccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---
Q 008915 175 TATKFNPN-------RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--- 244 (549)
Q Consensus 175 i~~~~~~~-------~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d--- 244 (549)
....|..- ...|.+ +..+......+++..+.+.|.+.+.+.+..++.+++|+++...+++++|++.+
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~ 157 (447)
T 2gv8_A 81 PSPLYRDLQTNTPIELMGYCD---QSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKA 157 (447)
T ss_dssp CCCCCTTCBCSSCHHHHSCTT---CCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESST
T ss_pred cCchhhhhccCCCHHHhccCC---CCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCC
Confidence 00000000 001110 00011111224567788888888877777899999999999888888888865
Q ss_pred Cc---EEEcCEEEEccCCChH
Q 008915 245 GK---ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 245 G~---~i~ArlVI~ADG~~S~ 262 (549)
|+ ++++|.||.|+|++|.
T Consensus 158 G~~~~~~~~d~VVvAtG~~s~ 178 (447)
T 2gv8_A 158 GSPISKDIFDAVSICNGHYEV 178 (447)
T ss_dssp TCCEEEEEESEEEECCCSSSS
T ss_pred CCeeEEEEeCEEEECCCCCCC
Confidence 66 7999999999999763
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=110.04 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEE---EEE-EcCCc--EEEcCEEEEccCCChHHHHH
Q 008915 204 PAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAA---VLL-LAEGK--ILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 204 ~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv---~V~-~~dG~--~i~ArlVI~ADG~~S~vrrq 266 (549)
...+.+.|.+++.+.| +++++++.|+++..+++.+ .+. +.+|+ +++|+.||.|+|..|.+...
T Consensus 133 g~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~ 202 (602)
T 1kf6_A 133 GFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRY 202 (602)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSS
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccccC
Confidence 3568889999998888 8999999999999887743 332 24676 79999999999999987543
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-08 Score=102.31 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=79.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.|||+||||| +|+++|..|+++|++|+|||+....+. |..+ + .+ ..+ .+
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~----------~-----~~-----~~~-------~~ 57 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQ---IAWS----------E-----EV-----ENF-------PG 57 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGG---GGGC----------S-----CB-----CCS-------TT
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcc---cccc----------c-----cc-----ccC-------CC
Confidence 6999999975 588999999999999999999843221 1100 0 00 000 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE--CCE-EEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY--ENA-AVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~--~dg-v~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. ...+++..+.+.+.+.+.+.|++++. +++++++.+ ++. +.|.+.+|++++++.||.|+|..+
T Consensus 58 -----~----~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~ 123 (325)
T 2q7v_A 58 -----F----PEPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADP 123 (325)
T ss_dssp -----C----SSCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEE
T ss_pred -----C----CCCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence 0 01245567788888888888999887 689998876 443 667777888999999999999865
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=7.9e-09 Score=112.47 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEEC-CEEE-EEEc-CCc--EEEcC-EEEEccCCCh
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV-LLLA-EGK--ILSSH-LIIDAMGNFS 261 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv~-V~~~-dG~--~i~Ar-lVI~ADG~~S 261 (549)
.+.+.|.+++++.|++++++++|+++..++ +.++ |.+. +++ +++|+ .||.|+|..|
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 688899999999999999999999999874 4332 3332 343 69995 9999999988
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-07 Score=99.05 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=38.1
Q ss_pred CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 220 ~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
++|+.+++|++|..+++++.|++++|++++||.||.|.....
T Consensus 248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~ 289 (470)
T 3i6d_A 248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKA 289 (470)
T ss_dssp EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHH
T ss_pred CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHH
Confidence 589999999999998889999998898899999999997654
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.5e-08 Score=99.85 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=79.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
+|||+||||| +|+++|..|+++|++|+||||....+. +..+ . .+ ..+ .+
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~-------------~--~~-----~~~-------~~ 65 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGL---TAEA-------------P--LV-----ENY-------LG 65 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGG---GGGC-------------S--CB-----CCB-------TT
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc---cccc-------------c--hh-----hhc-------CC
Confidence 6999999975 599999999999999999999543221 1100 0 00 000 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
+ ..+++..+.+.+.+.+.+.|++++. .++++++.+++.+.|.+ ++.+++++.||.|+|..+
T Consensus 66 ---~-------~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~ 126 (319)
T 3cty_A 66 ---F-------KSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTH 126 (319)
T ss_dssp ---B-------SSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEE
T ss_pred ---C-------cccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCc
Confidence 0 1234556777788888888888887 78999998888888877 667899999999999765
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.8e-08 Score=96.49 Aligned_cols=109 Identities=22% Similarity=0.275 Sum_probs=79.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
+|||+||||| +|+++|..|+++|++|+|+|+....... .. . ...+.+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~------------------~~-----------~---~~~~~~ 49 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRF------------------AS-----------H---SHGFLG 49 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGG------------------CS-----------C---CCSSTT
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccccc------------------ch-----------h---hcCCcC
Confidence 4899999976 5999999999999999999987531100 00 0 000000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. ..+++..+...+.+.+.+. +++++. ++|++++.+++++.|.+++|++++++.||.|+|..+
T Consensus 50 ~----------~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~ 112 (297)
T 3fbs_A 50 Q----------DGKAPGEIIAEARRQIERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD 112 (297)
T ss_dssp C----------TTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEE
T ss_pred C----------CCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCC
Confidence 0 0234567778888888776 456654 599999999889999998888999999999999865
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.5e-08 Score=107.37 Aligned_cols=133 Identities=17% Similarity=0.265 Sum_probs=87.5
Q ss_pred cccEEEEcch-HHHHHHHHHH-hCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALS-FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA-r~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
++|||||||| +|+++|..|+ +.|++|+||||+...+. .|... .--|.. .++.. ..|.. .|.
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GG--tw~~~-------~ypg~~--~d~~s---~~~~~---~~~ 70 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG--TWYWN-------RYPGAL--SDTES---HLYRF---SFD 70 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCT--HHHHC-------CCTTCE--EEEEG---GGSSC---CSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCC--ccccc-------CCCCce--ecCCc---ceeee---ccc
Confidence 6999999976 5888999999 89999999999875441 12100 000110 00000 00100 010
Q ss_pred CCcccc-ccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEECC--EEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d--gv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
..+. .........+...+.+.|.+.+.+.|+ +++.+++|+++..+++ .++|++++|++++||.||.|+|..|
T Consensus 71 --~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s 147 (540)
T 3gwf_A 71 --RDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLS 147 (540)
T ss_dssp --HHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCC
T ss_pred --cccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccc
Confidence 0000 000001224567788888888888888 8999999999998876 7889998898999999999999876
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.7e-07 Score=94.73 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.+-+.|.+.+.+.|++++.+++|+++..+++++ |. .+|++++||.||-|.|....
T Consensus 190 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V~-~~g~~~~ad~Vv~a~~~~~~ 244 (421)
T 3nrn_A 190 AVIDELERIIMENKGKILTRKEVVEINIEEKKV-YT-RDNEEYSFDVAISNVGVRET 244 (421)
T ss_dssp HHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-EE-TTCCEEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-EE-eCCcEEEeCEEEECCCHHHH
Confidence 466778888888899999999999999888888 64 57789999999999997654
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.8e-08 Score=98.88 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=80.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.+||+||||| +|+++|..|+++|++|+||||. ..+ .|.. .+ ..+ .+.+
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~gg---~~~~----------~~------------~~~-----~~~~ 63 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET-PGG---QLTE----------AG------------IVD-----DYLG 63 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-TTG---GGGG----------CC------------EEC-----CSTT
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc-CCC---eecc----------cc------------ccc-----ccCC
Confidence 6999999976 5999999999999999999997 222 1110 00 000 0000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.+ .+++..+.+.+.+.+.+.|++++. ++|+++..+++.+.|.+.+|.+++++.||.|+|...
T Consensus 64 -----~~-----~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~ 125 (323)
T 3f8d_A 64 -----LI-----EIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKR 125 (323)
T ss_dssp -----ST-----TEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEE
T ss_pred -----CC-----CCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCC
Confidence 00 134567778888888888999988 999999988888889988888999999999999873
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-08 Score=102.89 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=80.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.+||+||||| +|+++|..|+++|++|+|||+...... .+. |.+.. .... ..+
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~----~~g----------g~~~~-------~~~~----~~~-- 60 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDI----APG----------GQLTT-------TTDV----ENF-- 60 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTB----CTT----------CGGGG-------CSEE----CCS--
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCcccc----CCC----------ceeee-------cccc----ccC--
Confidence 5899999975 599999999999999999998211000 000 00000 0000 000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
+. +...+++..+.+.|.+.+.+.|++++.++ +++++.+++.++|++ +|.+++++.||.|+|..+.
T Consensus 61 ------~~-~~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~ 125 (333)
T 1vdc_A 61 ------PG-FPEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAK 125 (333)
T ss_dssp ------TT-CTTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEEC
T ss_pred ------CC-CccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcC
Confidence 00 01124566788888888888899999887 889887777788887 7788999999999998764
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=8.8e-08 Score=104.97 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=83.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
++|||||||| .|+++|..|+++|++|+||||....+. .|... ..-|+.. +... ..|. ..|.
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG--~w~~~-------~~pg~~~--d~~~---~~~~---~~f~- 77 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG--VWYWN-------RYPGARC--DIES---IEYC---YSFS- 77 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHC-------CCTTCBC--SSCT---TTSS---CCSC-
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCC--ccccc-------CCCceee--cccc---cccc---cccC-
Confidence 6999999976 588999999999999999999876541 12100 0001100 0000 0000 0010
Q ss_pred Cccccc-cccccceeCHHHHHHHHHHHHHhcC--CEEEeCceEEEEEEECC--EEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 189 KGEIWV-EDILNLGVSPAKLIEIVKKRFISLG--GVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 189 ~~~l~~-~~~l~~~V~~~~L~~~L~~~a~~~G--~~v~~~t~v~~i~~~~d--gv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+.. ........++..+.+.|.+.+.+.+ .+++.+++|+++..+++ .+.|++++|++++||.||.|+|..|.
T Consensus 78 -~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~ 155 (542)
T 1w4x_A 78 -EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSV 155 (542)
T ss_dssp -HHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCC
T ss_pred -hhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCC
Confidence 00000 0000011345667777776666655 57999999999988764 68898888889999999999998763
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-08 Score=100.88 Aligned_cols=118 Identities=18% Similarity=0.194 Sum_probs=82.8
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
..+||+||||| +|+++|..|+++|++|+||||.+..... +. |.+... ... ..+.
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~----~g----------g~~~~~-------~~~----~~~~ 75 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIA----AG----------GQLTTT-------TEI----ENFP 75 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBC----TT----------CGGGGS-------SEE----CCST
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCC----cC----------cccccc-------hhh----cccC
Confidence 36999999976 5999999999999999999997621110 00 111000 000 0000
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc---CCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---dG~~i~ArlVI~ADG~~S 261 (549)
. +...+++..+.+.+.+.+.+.|++++.++ |++++.+++.+.+.+. ++.+++++.||.|+|..+
T Consensus 76 --------~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~ 142 (338)
T 3itj_A 76 --------G-FPDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASA 142 (338)
T ss_dssp --------T-CTTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEE
T ss_pred --------C-CcccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCc
Confidence 0 01124456788888888888899999998 9999888888888874 567899999999999854
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.4e-08 Score=105.43 Aligned_cols=134 Identities=18% Similarity=0.237 Sum_probs=87.0
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.++|||||||| +|+++|..|++.|++|+||||+...+. .|... ..-|... ++.. ..|. ..|.
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG--tw~~~-------~ypg~~~--dv~s---~~y~---~~f~ 82 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG--VWYWN-------RYPGARC--DVES---IDYS---YSFS 82 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHC-------CCTTCBC--SSCT---TTSS---CCSC
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCC--ccccC-------CCCCcee--CCCc---hhcc---cccc
Confidence 36999999976 588899999999999999999875441 11100 0001100 0000 0010 0010
Q ss_pred CCcccc-ccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEECC--EEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d--gv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
..+. .........+...+.+.+.+.+.+.|. +++.+++|++++.+++ .++|++++|++++||.||.|+|..|
T Consensus 83 --~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s 159 (549)
T 4ap3_A 83 --PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLS 159 (549)
T ss_dssp --HHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEE
T ss_pred --cccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCC
Confidence 0000 000001123566778888888888887 8999999999998776 7889998898999999999999765
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.8e-08 Score=99.11 Aligned_cols=111 Identities=20% Similarity=0.270 Sum_probs=78.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.|||+||||| +|+++|..|+++|++|+|||+....+. |..+ . .+ ..+
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~-------------~--~~-----~~~--------- 61 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGA---LMTT-------------T--DV-----ENY--------- 61 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCG---GGSC-------------S--CB-----CCS---------
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc---eecc-------------c--hh-----hhc---------
Confidence 6999999976 588899999999999999997633221 1000 0 00 000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEE-EEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V-~~~dG~~i~ArlVI~ADG~~S 261 (549)
+ .+...+++..+.+.+.+.+.+.|++++.++ +++++. ++.+.| .+++|++++++.||.|+|..+
T Consensus 62 ------~-~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~ 126 (335)
T 2a87_A 62 ------P-GFRNGITGPELMDEMREQALRFGADLRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAMGAAA 126 (335)
T ss_dssp ------T-TCTTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEE
T ss_pred ------C-CCCCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCc
Confidence 0 001124556777778888888899999887 888876 555667 777788999999999999865
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=104.37 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEEC-CE---EEEEEcCCc--EEEcCEEEEccCCChHH
Q 008915 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA---AVLLLAEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dg---v~V~~~dG~--~i~ArlVI~ADG~~S~v 263 (549)
...+.+.|.+++.+.|++++.+++|+++..++ +. +++...+|+ +++|+.||.|+|..|..
T Consensus 254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~ 319 (572)
T 1d4d_A 254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKN 319 (572)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTC
T ss_pred HHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccC
Confidence 56788899999999999999999999998766 43 333333564 69999999999998864
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.8e-08 Score=98.96 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
+.+.|.+++ |++++.+++|+++..++++++|++++|+++++|.||.|..
T Consensus 114 l~~~l~~~~---g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p 162 (342)
T 3qj4_A 114 IIKHYLKES---GAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMP 162 (342)
T ss_dssp HHHHHHHHH---TCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSC
T ss_pred HHHHHHHhc---CCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCC
Confidence 344444433 8899999999999999899999998888799999999986
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=8.9e-08 Score=96.71 Aligned_cols=115 Identities=20% Similarity=0.249 Sum_probs=83.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.+||+||||| +|+++|..|+++|++|+|||+.+..+. .| .. .+....+ ..
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG--~~-------~~------------------~~~~~~~--~~ 57 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGG--QL-------SA------------------LYPEKYI--YD 57 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH--HH-------HH------------------HCTTSEE--CC
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCc--ee-------hh------------------cCCCceE--ec
Confidence 5899999976 588999999999999999999875431 11 00 0000000 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.+.. ..+++..+...+.+.+.+.|++++.+++|++++.+++ .+.|.+++|+ ++++.||.|+|..|
T Consensus 58 -----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~ 123 (332)
T 3lzw_A 58 -----VAGF--PKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGA 123 (332)
T ss_dssp -----STTC--SSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSC
T ss_pred -----cCCC--CCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCc
Confidence 0000 0134567888888888888999999999999988876 7888887775 99999999999954
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.2e-08 Score=108.55 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHh-cCCEEEeCceEEEEEE-ECC------EEE-EEEc---CCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFIS-LGGVIFEGYSVSSICT-YEN------AAV-LLLA---EGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~-~~d------gv~-V~~~---dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++++ .|+++++++.|+++.. +++ .+. |.+. +|+ +++|+.||.|+|..|.+
T Consensus 138 ~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 210 (540)
T 1chu_A 138 REVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKV 210 (540)
T ss_dssp ----CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGG
T ss_pred HHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 3566778888887 6899999999999987 434 332 3332 565 79999999999999865
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=104.92 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE---EEEE-cCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA---VLLL-AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv---~V~~-~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++.+.|+++++++.|+++..+++.+ .+.. .+|+ +++|+.||.|+|..|.
T Consensus 155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 218 (621)
T 2h88_A 155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR 218 (621)
T ss_dssp HHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred HHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence 4688899999988899999999999998876643 2322 3565 7999999999999885
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=97.92 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=83.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCC-cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+|||+||||| +|+++|..|++.|+ +|+|||+.. .+. .|.-.+.. .-+...... ...+.. ..+.
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg--~~~~~~~~------~~~~~~~~~----~~~~g~--~~~~ 68 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGH--SFKHWPKS------TRTITPSFT----SNGFGM--PDMN 68 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTH--HHHTSCTT------CBCSSCCCC----CGGGTC--CCTT
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCC--ccccCccc------ccccCcchh----cccCCc--hhhh
Confidence 5899999976 59999999999999 999999987 321 11100000 000000000 000000 0000
Q ss_pred CCccccccc--cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVED--ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~--~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.......+. .....+++..+.+.+.+.+.+.|++++.+++|+++..+++++.|.+.++ +++++.||.|+|..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~ 143 (369)
T 3d1c_A 69 AISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYN 143 (369)
T ss_dssp CSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTT
T ss_pred hccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCC
Confidence 000000000 0011245566777888888888999999999999988877888888666 599999999999876
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-07 Score=94.69 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=72.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
+|||+||||| +|+++|..|+|+|++|+|||+....+. + . ..+ ++ |..
T Consensus 6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~-----~-------------~----------~~~-~~---~~~ 53 (304)
T 4fk1_A 6 YIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNR-----V-------------T----------QNS-HG---FIT 53 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGG-----G-------------S----------SCB-CC---STT
T ss_pred CcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCe-----e-------------e----------eec-CC---ccC
Confidence 6999999965 688899999999999999998754220 0 0 001 00 100
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
. -.+++..+.+...+.+.+.+...+...+++.+... ++.++|.+.+|+++++|-||-|+|..
T Consensus 54 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~ 116 (304)
T 4fk1_A 54 R----------DGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQ 116 (304)
T ss_dssp C----------TTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCE
T ss_pred C----------CCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCc
Confidence 0 01344556666666666666654555555665544 44567888889999999999999974
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=8.3e-08 Score=96.75 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=78.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.+||+||||| +|+++|..|+++|++|+|+|+....+. |..+ . .+ ..+ .
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~-------------~--~~-----~~~-------~- 53 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQ---LTTT-------------T--EV-----ENW-------P- 53 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGG---GGGC-------------S--BC-----CCS-------T-
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCce---Eecc-------------h--hh-----hhC-------C-
Confidence 5899999975 599999999999999999997533221 1000 0 00 000 0
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. +...+.+..+.+.+.+.+.+.|++++.++ ++.++.+++.+.| +.++.+++++.||.|+|..+
T Consensus 54 --~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~ 116 (320)
T 1trb_A 54 --G------DPNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGASA 116 (320)
T ss_dssp --T------CCSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCEEE
T ss_pred --C------CCCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCCCc
Confidence 0 00123455677777778888899999886 8888877777777 66788899999999999865
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-07 Score=99.74 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc-CCcEEEcCEEEEccCCChHHH
Q 008915 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGKILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~-dG~~i~ArlVI~ADG~~S~vr 264 (549)
...+.+.|.+++++.|+++++++++ ++..+++.+. |.+. ++.+++|+.||.|+|..|.+.
T Consensus 118 g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~ 179 (472)
T 2e5v_A 118 GREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLY 179 (472)
T ss_dssp HHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGS
T ss_pred HHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccC
Confidence 4567788888887789999999999 9988777552 3332 233588999999999999764
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-07 Score=102.10 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=85.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhh-hccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA-TKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~-~~~~~~~i~f~ 187 (549)
++|||||||| +|+++|..|++.|++|+||||+...+. .|... .--|+.. ++..... ..+.+...
T Consensus 9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GG--tw~~~-------~yPg~~~--d~~~~~y~~~f~~~~~--- 74 (545)
T 3uox_A 9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG--TWYWN-------RYPGCRL--DTESYAYGYFALKGII--- 74 (545)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHC-------CCTTCBC--SSCHHHHCHHHHTTSS---
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCC--ccccC-------CCCceee--cCchhhcccccCcccc---
Confidence 6999999976 588899999999999999999875441 12100 0001100 0000000 00000000
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEECC--EEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d--gv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
...-+. ....+...+.+.+.+.+.+.|. .++.+++|++++.+++ .+.|++++|++++||.||.|+|..|.
T Consensus 75 -~~~~~~----~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~ 148 (545)
T 3uox_A 75 -PEWEWS----ENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSA 148 (545)
T ss_dssp -TTCCCS----BSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC
T ss_pred -cCCCcc----ccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCC
Confidence 000010 1123456677777777777777 7899999999987655 78899988989999999999997663
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-08 Score=103.61 Aligned_cols=139 Identities=18% Similarity=0.140 Sum_probs=81.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-----C-----ccc-------------cCCHHHHHHHHHcCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-----E-----QEW-------------NISRKELLELVESGI 165 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-----~-----r~~-------------~IS~~~l~~L~~lGl 165 (549)
++|||||||| +|+++|+.|+++|++|+||||...... . ..+ .++..+++.+.++.-
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g~s~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFKKWVELVP 85 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCcCCcCcccCcccccccCcccCCCchHHHHHHHHHHHHHHHhCc
Confidence 6999999976 599999999999999999999865431 0 001 011223344444311
Q ss_pred CCcccchhh----h-------hhcc-CC--CcccccCCcccc-ccc---cccceeCHHHHHHHHHHHHHhcCCEEEeCce
Q 008915 166 LVEDDIDEA----T-------ATKF-NP--NRCGFEGKGEIW-VED---ILNLGVSPAKLIEIVKKRFISLGGVIFEGYS 227 (549)
Q Consensus 166 ~~~~eie~~----i-------~~~~-~~--~~i~f~~~~~l~-~~~---~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~ 227 (549)
.. ..++.. + ..++ .. ..+......++. ... .....+++..+.+.|.+++++.|++++. ++
T Consensus 86 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~~g~~~~~~~v~p~~~~~~l~~~~~~~G~~i~~-~~ 163 (363)
T 1c0p_A 86 TG-HAMWLKGTRRFAQNEDGLLGHWYKDITPNYRPLPSSECPPGAIGVTYDTLSVHAPKYCQYLARELQKLGATFER-RT 163 (363)
T ss_dssp TT-SSEEEEEEEEEESSGGGGGGGTTTTTSTTCEECCGGGSSTTCEEEEEEEEECCHHHHHHHHHHHHHHTTCEEEE-CC
T ss_pred cc-CCeEEECCEEEEecCccchhHHHHHhCCCcEECCHHHCCCceEEEEEecceecHHHHHHHHHHHHHHCCCEEEE-EE
Confidence 10 001000 0 0000 00 000000001110 000 0124589999999999999999999998 88
Q ss_pred EEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 228 VSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 228 v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
|+++..+ .+ +|+.||.|+|.+|.
T Consensus 164 v~~l~~~-----------~~-~a~~VV~A~G~~s~ 186 (363)
T 1c0p_A 164 VTSLEQA-----------FD-GADLVVNATGLGAK 186 (363)
T ss_dssp CSBGGGT-----------CS-SCSEEEECCGGGGG
T ss_pred cccHhhc-----------Cc-CCCEEEECCCcchh
Confidence 8877432 12 89999999999984
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-07 Score=103.01 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE---EEEEE-cCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLL-AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~-~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++.+.|+++++++.|+++..+++. +.+.. .+|+ +++|+.||.|+|..+.
T Consensus 158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 221 (660)
T 2bs2_A 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR 221 (660)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred HHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchh
Confidence 468888999998889999999999999887663 33322 4565 5999999999999884
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=95.35 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=78.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
+|||+||||| +|+++|..|+++|++|+|||+.. .+ .|.- ..+ +. .+..
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~-gG---~~~~---------~~~------~~------------~~~~ 49 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF-GG---QILD---------TVD------IE------------NYIS 49 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST-TG---GGGG---------CCE------EC------------CBTT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC-Cc---eecc---------ccc------cc------------cccC
Confidence 4899999975 58899999999999999998631 11 1100 000 00 0000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEEC---CEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE---NAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~---dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.+ ..++..+.+.+.+.+.+.|++++.+++|+.++.+. +.+.|.+++|++++++.||.|+|..+
T Consensus 50 -----~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~ 115 (310)
T 1fl2_A 50 -----VP-----KTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKW 115 (310)
T ss_dssp -----BS-----SEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred -----cC-----CCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence 00 12345677778888888899999999999997653 26788888888899999999999865
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=96.45 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=42.3
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+++..+.+.|.+++++.|+++++ ++|+++...+ .++|+.||.|+|.+|.
T Consensus 137 ~~v~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-----------~~~a~~VV~A~G~~s~ 187 (351)
T 3g3e_A 137 LILEGKNYLQWLTERLTERGVKFFQ-RKVESFEEVA-----------REGADVIVNCTGVWAG 187 (351)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH-----------HTTCSEEEECCGGGGG
T ss_pred eEEcHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh-----------cCCCCEEEECCCcChH
Confidence 4689999999999999999999988 8887763221 2689999999999984
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.4e-07 Score=100.49 Aligned_cols=59 Identities=14% Similarity=0.212 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CCEEE-EEE---cCCc--EEEcCEEEEccCCChHH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAV-LLL---AEGK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~-V~~---~dG~--~i~ArlVI~ADG~~S~v 263 (549)
..+.+.|.+++.+.|+++++++.|+++..+ ++.+. |.+ .+|+ +++|+.||.|+|..|.+
T Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~ 208 (588)
T 2wdq_A 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccc
Confidence 567788999998889999999999999886 44332 332 3565 69999999999998753
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.5e-07 Score=96.19 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+-+.|.+.+.+.|++|+.+++|++|..++++++ |++ +|++++||.||-|.|....
T Consensus 196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~ 253 (425)
T 3ka7_A 196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAAT 253 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHH
Confidence 34667788888889999999999999999988876 666 5778999999999997654
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=99.74 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=85.3
Q ss_pred ccEEEEcch-HHHHHHHHHHh---CCCc---EEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCc
Q 008915 111 FDVIVCGGT-LGIFIATALSF---KGLR---VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR 183 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr---~Glr---VlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~ 183 (549)
+||+||||| +|+++|..|++ .|++ |+||||....+ ..|...... .+...|+.....+-...........
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~G--G~w~~~~~~--g~~~~g~~~~~~~y~~l~~~~~~~~ 78 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWG--GQWNYTWRT--GLDENGEPVHSSMYRYLWSNGPKEC 78 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSC--GGGSCCSCC--SBCTTSSBCCCCCCTTCBCSSCGGG
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCC--CEeecCCCC--CccccCCCCcCccccchhhcCChhh
Confidence 799999976 58889999999 9999 99999986544 122211000 0000111000000000000000000
Q ss_pred ccccCCcccccccc----ccceeCHHHHHHHHHHHHHhcCCE--EEeCceEEEEEEECC--EEEEEEcC---C--cEEEc
Q 008915 184 CGFEGKGEIWVEDI----LNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYEN--AAVLLLAE---G--KILSS 250 (549)
Q Consensus 184 i~f~~~~~l~~~~~----l~~~V~~~~L~~~L~~~a~~~G~~--v~~~t~v~~i~~~~d--gv~V~~~d---G--~~i~A 250 (549)
+.|.+ +..+.. ....+++..+.+.|.+.+.+.|++ ++.+++|+++...++ .+.|++.+ | .++++
T Consensus 79 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~ 155 (464)
T 2xve_A 79 LEFAD---YTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF 155 (464)
T ss_dssp TCBTT---BCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred cccCC---CCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEc
Confidence 11110 000000 012246677888888888888887 999999999998876 67777754 4 47999
Q ss_pred CEEEEccCCChH
Q 008915 251 HLIIDAMGNFSP 262 (549)
Q Consensus 251 rlVI~ADG~~S~ 262 (549)
|.||.|+|..|.
T Consensus 156 d~VVvAtG~~s~ 167 (464)
T 2xve_A 156 DYVVCCTGHFST 167 (464)
T ss_dssp SEEEECCCSSSS
T ss_pred CEEEECCCCCCC
Confidence 999999997653
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.5e-07 Score=90.44 Aligned_cols=115 Identities=21% Similarity=0.250 Sum_probs=76.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCC-cccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILV-EDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~-~~eie~~i~~~~~~~~i~f~ 187 (549)
.||||||||| +|+++|..|+++|++|+|+|+....+.... |-+. ...++ .+ .
T Consensus 4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~--------------G~~~~~~~i~-----~~-------~ 57 (314)
T 4a5l_A 4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAG--------------GQLTTTTIIE-----NF-------P 57 (314)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTT--------------CGGGGSSEEC-----CS-------T
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccC--------------CCcCChHHhh-----hc-------c
Confidence 6999999965 688999999999999999999765332100 1000 00000 00 0
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
+ .+ ..++...+...+.+.+...+.++... .+.......+...+.+.++.+++++-||-|+|..
T Consensus 58 g-----~~----~~i~~~~l~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~ 120 (314)
T 4a5l_A 58 G-----FP----NGIDGNELMMNMRTQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGAT 120 (314)
T ss_dssp T-----CT----TCEEHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEE
T ss_pred C-----Cc----ccCCHHHHHHHHHHHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEccccc
Confidence 0 01 12445667777777787788877654 4666666666677777788899999999999964
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=101.40 Aligned_cols=143 Identities=13% Similarity=0.077 Sum_probs=82.6
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCC-----CcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKG-----LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN 182 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~G-----lrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~ 182 (549)
..||||||||| +|+++|..|+++| ++|+||||.+..+.....-+. ...+ +...++.... ..++.
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~--------~~~~-~~~~~~~l~~-~~~p~ 98 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVS--------QSEL-QISFLKDLVS-LRNPT 98 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCS--------SCBC-SSCTTSSSST-TTCTT
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCC--------CCcC-Ccchhhcccc-ccCCC
Confidence 36999999976 5999999999999 999999999865421100000 0000 0000000000 00000
Q ss_pred -ccccc----CCcccc-ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE---CCE--EEEEEcCCc----E
Q 008915 183 -RCGFE----GKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENA--AVLLLAEGK----I 247 (549)
Q Consensus 183 -~i~f~----~~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dg--v~V~~~dG~----~ 247 (549)
...|. ....+. ....-.....+..+.+.|...+.+.+++++.+++|++++.+ ++. ++|++.+|. +
T Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~ 178 (463)
T 3s5w_A 99 SPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELV 178 (463)
T ss_dssp CTTSHHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEE
T ss_pred CCCChhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEE
Confidence 00000 000000 00000112345677788877777778899999999999876 332 467766665 8
Q ss_pred EEcCEEEEccCCCh
Q 008915 248 LSSHLIIDAMGNFS 261 (549)
Q Consensus 248 i~ArlVI~ADG~~S 261 (549)
+++|.||.|+|...
T Consensus 179 ~~~d~lVlAtG~~p 192 (463)
T 3s5w_A 179 RTTRALVVSPGGTP 192 (463)
T ss_dssp EEESEEEECCCCEE
T ss_pred EEeCEEEECCCCCC
Confidence 99999999999743
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.4e-07 Score=95.93 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChHHHH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVK 265 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~vrr 265 (549)
.|-+.|.+.+++.|++|+.+++|++|..++++++ |+++||++++||.||.+.+.....++
T Consensus 222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~ 282 (501)
T 4dgk_A 222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRD 282 (501)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC-------
T ss_pred chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHH
Confidence 4567788888889999999999999999999877 88889999999999987776554443
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=7.8e-07 Score=99.56 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=84.8
Q ss_pred cccEEEEcch-HHHHHHHHHH---h-CCCcEEEEccCCCCCCC----cccc----C----------CHHHH-HHHHH--c
Q 008915 110 TFDVIVCGGT-LGIFIATALS---F-KGLRVAIVERNTLKGRE----QEWN----I----------SRKEL-LELVE--S 163 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA---r-~GlrVlLIEr~~~~~~~----r~~~----I----------S~~~l-~~L~~--l 163 (549)
+||||||||| +|+++|+.|+ + +|.+|+||||....+.. ..+. + +.... ..... .
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~ 101 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDMM 101 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHHTT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHHHHHHHHHhc
Confidence 6999999965 6999999999 6 89999999998764321 1111 2 11111 11111 1
Q ss_pred CCCCcccchhhhh------hccCCCcccccC--CccccccccccceeCHHHHHHHHHHHHHhc-CC-EEEeCceEEEEEE
Q 008915 164 GILVEDDIDEATA------TKFNPNRCGFEG--KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GG-VIFEGYSVSSICT 233 (549)
Q Consensus 164 Gl~~~~eie~~i~------~~~~~~~i~f~~--~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~-~v~~~t~v~~i~~ 233 (549)
++.++.-++.+.. .......+.|.. ...+.........++...+.+.|.+++++. |+ ++++++.|+++..
T Consensus 102 ~l~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~ 181 (643)
T 1jnr_A 102 GLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLK 181 (643)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHHHHCGGGEECSEEEEEEEE
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccCCCccccCCCcHHHHHHHHHHHHhcCCCcEEEecCEEEEEEE
Confidence 2222111110000 000000111210 001110000001122334667788888777 99 9999999999988
Q ss_pred ECC---EEE-EE---EcCCc--EEEcCEEEEccCCChH
Q 008915 234 YEN---AAV-LL---LAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 234 ~~d---gv~-V~---~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
+++ .+. |. +.+|+ +++|+.||.|+|..|.
T Consensus 182 ~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~ 219 (643)
T 1jnr_A 182 DNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATL 219 (643)
T ss_dssp CTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred cCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccc
Confidence 766 442 22 24565 6999999999999885
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.5e-07 Score=98.21 Aligned_cols=113 Identities=20% Similarity=0.222 Sum_probs=80.8
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
...|||+||||| +|+++|..|+++|++|+|||+.. .+ .|.- ..+ ++ .+
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~-GG---~~~~---------~~~------~~------------~~ 258 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF-GG---QVLD---------TVD------IE------------NY 258 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST-TG---GGTT---------CSC------BC------------CB
T ss_pred cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC-CC---cccc---------ccc------cc------------cc
Confidence 347999999965 58899999999999999999632 11 1100 000 00 00
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEEC---CEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE---NAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~---dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. ..+ ..+...+.+.+.+.+.+.|++++.+++|+++..+. +.+.|++++|.+++++.||.|+|..+
T Consensus 259 ~-----~~~-----~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~ 326 (521)
T 1hyu_A 259 I-----SVP-----KTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKW 326 (521)
T ss_dssp T-----TBS-----SBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred C-----CCC-----CCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 0 000 13456677888888888899999999999997542 36788888888999999999999865
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=92.82 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=40.0
Q ss_pred HHHHHH-hcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 211 VKKRFI-SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 211 L~~~a~-~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
+.+++. +.| +|+.+++|++|..++++++|++.+|++++||.||.|.|.
T Consensus 209 l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~ 257 (431)
T 3k7m_X 209 LVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPM 257 (431)
T ss_dssp HHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCG
T ss_pred HHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCc
Confidence 334443 346 999999999999888899999988888999999999993
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.3e-07 Score=99.11 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhc--CCEEEeCceEEEEEEECC---EE---EEE-EcCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISL--GGVIFEGYSVSSICTYEN---AA---VLL-LAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~--G~~v~~~t~v~~i~~~~d---gv---~V~-~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++++. |+++++++.++++..+++ .+ .+. ..+|+ +++|+.||.|+|..+.
T Consensus 166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~ 234 (662)
T 3gyx_A 166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN 234 (662)
T ss_dssp TSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence 45677888888887 999999999999988766 33 222 13454 6999999999998774
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-06 Score=85.64 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=75.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEE-EccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAI-VERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlL-IEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.+||+||||| +|+++|..|+++|++|+| +||....+. |..+ . .. ..+.
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~---~~~~----------~-------------~~----~~~~ 53 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQ---ITSS----------S-------------EI----ENYP 53 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGG---GGGC----------S-------------CB----CCST
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCce---eeee----------c-------------ee----ccCC
Confidence 6999999975 589999999999999999 999443221 1000 0 00 0000
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEEC--CEEEEEEc-CCcEEEcCEEEEccCCC
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAVLLLA-EGKILSSHLIIDAMGNF 260 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dgv~V~~~-dG~~i~ArlVI~ADG~~ 260 (549)
+ ....+++..+...+.+.+.+.|++++.+ +++++ .++ +.+.+.+. ++ +++++.||.|+|..
T Consensus 54 ~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~ 117 (315)
T 3r9u_A 54 G---------VAQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSA 117 (315)
T ss_dssp T---------CCSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEE
T ss_pred C---------CCCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCC
Confidence 0 0112455677788888888889999888 89998 776 67775343 34 89999999999973
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-06 Score=85.89 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=68.2
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+.+||||||||| +|+++|..|+++|++|+||||..+.+... + .+ .+. . +
T Consensus 4 e~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~--~-----------~~-----~i~-----~-------~ 53 (312)
T 4gcm_A 4 EIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMA--N-----------TE-----EVE-----N-------F 53 (312)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGG--G-----------CS-----CBC-----C-------S
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeee--c-----------cc-----ccC-----C-------c
Confidence 347999999965 68889999999999999999875433110 0 00 000 0 0
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.+.. .+....+.........+.+..+.....+...... ... +...+++++++|.||-|+|..
T Consensus 54 p~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~d~liiAtGs~ 115 (312)
T 4gcm_A 54 PGFE----------MITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKG-EYK-VINFGNKELTAKAVIIATGAE 115 (312)
T ss_dssp TTCS----------SBCHHHHHHHHHHHHHHTTCEEEECCCCEEEECS-SCE-EEECSSCEEEEEEEEECCCEE
T ss_pred CCcc----------ccchHHHHHHHHHHHhhccccccceeeeeeeeee-cce-eeccCCeEEEeceeEEcccCc
Confidence 0000 1223344445555555666777666655544332 233 333467899999999999964
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-07 Score=99.33 Aligned_cols=139 Identities=17% Similarity=0.068 Sum_probs=77.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
+|||+||||| +|+++|..|+++|++|+||||....+....+.. ..+...+...++++ .+ ...+....+. +
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~gG~~~~~g~-~psk~ll~~~~~~~-----~~-~~~~~~~g~~--~ 73 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGC-IPSKALLRNAELVH-----IF-TKDAKAFGIS--G 73 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCTTHHHHHHSH-HHHHHHHHHHHHHH-----HH-HHHTTTTTEE--E
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcccccCc-hhhHHHHHHHHHHH-----HH-HHHHHhcCCC--C
Confidence 5899999976 588899999999999999999843321100000 00111222111111 01 0011100010 0
Q ss_pred Cccccccccc---cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCChH
Q 008915 189 KGEIWVEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 189 ~~~l~~~~~l---~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~S~ 262 (549)
...+..+... ...+ ..+.+.+.+.+.+.|++++.++.+. .+++.+.|.+.+| ++++++.||.|+|..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~ 147 (464)
T 2a8x_A 74 EVTFDYGIAYDRSRKVA--EGRVAGVHFLMKKNKITEIHGYGTF---ADANTLLVDLNDGGTESVTFDNAIIATGSSTR 147 (464)
T ss_dssp CCEECHHHHHHHHHHHH--HHHHHHHHHHHHHTTCEEECEEEEE---SSSSEEEEEETTSCCEEEEEEEEEECCCEEEC
T ss_pred CCccCHHHHHHHHHHHH--HHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEEeCCCceEEEEcCEEEECCCCCCC
Confidence 0000000000 0000 2345556677777899999887643 4566788888777 68999999999998764
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=5.2e-07 Score=96.72 Aligned_cols=141 Identities=20% Similarity=0.202 Sum_probs=75.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-CCcccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+|||+||||| +|+++|..|++.|++|+||||.+..+ ....+. +.... .+....++ +.+. ..+....+.+
T Consensus 6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~--l~~~~~~~-----~~~~-~~~~~~g~~~ 77 (470)
T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKA--LLHSSHMY-----HEAK-HSFANHGVKV 77 (470)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHH--HHHHHHHH-----HHHH-HTHHHHTEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHH--HHHHHHHH-----HHHH-HHHHhcCccc
Confidence 6999999976 58889999999999999999985433 211110 11111 01000000 0000 0000000000
Q ss_pred cCCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCChH
Q 008915 187 EGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~S~ 262 (549)
. ...+..+...... --...+.+.+.+.+.+.|++++.++.+. .+++.+.|.+++| .+++++.||.|+|..+.
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~ 152 (470)
T 1dxl_A 78 S-NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF---VSPSEISVDTIEGENTVVKGKHIIIATGSDVK 152 (470)
T ss_dssp S-CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE---EETTEEEECCSSSCCEEEECSEEEECCCEEEC
T ss_pred C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCEEEEEeCCCceEEEEcCEEEECCCCCCC
Confidence 0 0000000000000 0012244445566666799999998654 4667788877677 68999999999998764
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-06 Score=91.31 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=35.9
Q ss_pred CCEEEeCceEEEEEEECCEEEEEE---cCCcEEEcCEEEEccCCCh
Q 008915 219 GGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 219 G~~v~~~t~v~~i~~~~dgv~V~~---~dG~~i~ArlVI~ADG~~S 261 (549)
|++|+.+++|++|..+++++.|++ .+|++++||.||-|.+...
T Consensus 249 g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~ 294 (478)
T 2ivd_A 249 GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHA 294 (478)
T ss_dssp GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHH
T ss_pred hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHH
Confidence 679999999999998888888887 6777899999999998664
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=98.29 E-value=5.5e-06 Score=89.05 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 206 KLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 206 ~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.+.+.|.+.+.+.| ++++.+++|++|..+++++.|++.+|++++||.||.|.|...
T Consensus 256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~ 312 (495)
T 2vvm_A 256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNV 312 (495)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHH
Confidence 45566777777777 899999999999988888999988888899999999999643
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.2e-07 Score=97.99 Aligned_cols=141 Identities=23% Similarity=0.201 Sum_probs=74.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCC-HHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNIS-RKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS-~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+||||||||| +|+++|..|++.|++|+||||.+..+.. +.+.. ..+...+....++ +.+ ..+....+.+.
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~-~~~~g~~psk~ll~~~~~~-----~~~--~~~~~~gi~~~ 77 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV-CLNVGCIPSKALLHNAAVI-----DEV--RHLAANGIKYP 77 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHH-HHHHSHHHHHHHHHHHHHH-----HHH--HHGGGGTCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCc-eeeecccchHHHHHHHHHH-----HHH--HHHHhCCcccC
Confidence 6999999975 5888999999999999999996543311 11100 0011111111110 000 00000001110
Q ss_pred CCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC------------cEEEcCEEE
Q 008915 188 GKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG------------KILSSHLII 254 (549)
Q Consensus 188 ~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG------------~~i~ArlVI 254 (549)
. ..+..+...... --...+.+.+.+.+.+.|++++.++.+. .+++.+.|.+.+| .+++++.||
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lV 153 (482)
T 1ojt_A 78 E-PELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF---LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCI 153 (482)
T ss_dssp C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE---EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred C-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE---ccCCEEEEEecCCcccccccccCcceEEEcCEEE
Confidence 0 000000000000 0001233445556667799999887654 4567777766555 579999999
Q ss_pred EccCCChH
Q 008915 255 DAMGNFSP 262 (549)
Q Consensus 255 ~ADG~~S~ 262 (549)
.|+|..+.
T Consensus 154 iAtGs~p~ 161 (482)
T 1ojt_A 154 IAAGSRVT 161 (482)
T ss_dssp ECCCEEEC
T ss_pred ECCCCCCC
Confidence 99998753
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.9e-07 Score=97.18 Aligned_cols=140 Identities=20% Similarity=0.187 Sum_probs=75.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCC-HHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNIS-RKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS-~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+|||+||||| +|+++|..|+++|++|+||||....+.. +.+.. ..+...+...+++ +.+. ..+....+.+.
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~-~~~~g~~psk~l~~~~~~~-----~~~~-~~~~~~gi~~~ 77 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGT-CLNVGCIPSKALLNNSHLF-----HQMH-TEAQKRGIDVN 77 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH-HHHHSHHHHHHHHHHHHHH-----HHHH-HTSGGGTEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCc-cceeccHHHHHHHHHHHHH-----HHHH-HHHHhcCcccC
Confidence 6999999975 5889999999999999999996543311 00000 0011111111111 0000 00100001000
Q ss_pred CCccccccccc---cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cE------EEcCEEEEc
Q 008915 188 GKGEIWVEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KI------LSSHLIIDA 256 (549)
Q Consensus 188 ~~~~l~~~~~l---~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~------i~ArlVI~A 256 (549)
....+..+... ... ...+...+.+.+.+.|++++.++.+.. +++.+.|.+.+| ++ +++|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~gv~~~~g~~~~~---~~~~v~V~~~~G~~~~~~~~~~i~~d~lViA 152 (478)
T 1v59_A 78 GDIKINVANFQKAKDDA--VKQLTGGIELLFKKNKVTYYKGNGSFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVA 152 (478)
T ss_dssp SCEEECHHHHHHHHHHH--HHHHHHHHHHHHHHTTCEEEESEEEES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEEC
T ss_pred CCCccCHHHHHHHHHHH--HHHHHHHHHHHHHhCCCEEEEEEEEEc---cCCeEEEEecCCCcccccccceEEeCEEEEC
Confidence 00000000000 000 012334455666678999999987652 556777877666 56 999999999
Q ss_pred cCCCh
Q 008915 257 MGNFS 261 (549)
Q Consensus 257 DG~~S 261 (549)
+|..+
T Consensus 153 tGs~p 157 (478)
T 1v59_A 153 TGSEV 157 (478)
T ss_dssp CCEEE
T ss_pred cCCCC
Confidence 99876
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-06 Score=92.85 Aligned_cols=135 Identities=19% Similarity=0.092 Sum_probs=75.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+||||||||| +|+++|..|++.|++|+||||....+....+. +.... .+....+ .+.+ ..+....+.+.
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~gG~~~~~g~~p~k~--l~~~~~~-----~~~~--~~~~~~g~~~~ 73 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKA--LISASHR-----YEQA--KHSEEMGIKAE 73 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHH--HHHHHHH-----HHHH--HTCGGGTEECC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCcCcCcCchhhHH--HHHHHHH-----HHHH--HHHHhcCcccC
Confidence 6999999976 58889999999999999999984432111000 11110 0100000 0000 00000001110
Q ss_pred CCccccccccccceeCH-----HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC-cEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVSP-----AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~-----~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG-~~i~ArlVI~ADG~~S 261 (549)
. ..+..+. .+.+ ..+.+.+.+.+.+.|++++.++.+. .+++.+.|++.+| ++++++.||.|+|..+
T Consensus 74 ~-~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~i~~d~lViATGs~p 145 (455)
T 1ebd_A 74 N-VTIDFAK----VQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF---VDANTVRVVNGDSAQTYTFKNAIIATGSRP 145 (455)
T ss_dssp S-CEECHHH----HHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE---EETTEEEEEETTEEEEEECSEEEECCCEEE
T ss_pred C-CccCHHH----HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCeEEEEeCCCcEEEEeCEEEEecCCCC
Confidence 0 0000000 0111 1244455666777899999988653 4677888888777 6899999999999754
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.5e-06 Score=89.93 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.|-+.|.+.+.+.|++|+.+++|++|..++++ +.|++ ++.+++||.||-|.+..
T Consensus 235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~~ 289 (477)
T 3nks_A 235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPAS 289 (477)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCHH
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCHH
Confidence 35667777787889999999999999987777 77776 55589999999998754
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=83.94 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=81.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-+|+|+||| .|+-+|..|++.|.+|.++|+.+.+.. . +
T Consensus 146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------~-------~--- 184 (384)
T 2v3a_A 146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP-------------------------------G-------L--- 184 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------T-------T---
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh-------------------------------c-------c---
Confidence 369999976 599999999999999999998652110 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH--HHHHh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQI 267 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~--vrrql 267 (549)
. +..+.+.+.+.+++.|++++.+++++++..+++++.|.+++|+++.|+.||.|.|..+. +.+.+
T Consensus 185 ------------~-~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~ 251 (384)
T 2v3a_A 185 ------------L-HPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAA 251 (384)
T ss_dssp ------------S-CHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHT
T ss_pred ------------c-CHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHC
Confidence 0 01234556677778899999999999999888888888888989999999999998764 45555
Q ss_pred cC
Q 008915 268 RS 269 (549)
Q Consensus 268 ~~ 269 (549)
+.
T Consensus 252 g~ 253 (384)
T 2v3a_A 252 GL 253 (384)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=85.73 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=36.8
Q ss_pred CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 220 ~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
++|+.+++|++|..++++++|++.+| +++||.||.|.+...
T Consensus 249 ~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~ 289 (475)
T 3lov_A 249 SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQ 289 (475)
T ss_dssp CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHH
T ss_pred CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHH
Confidence 69999999999999999999998888 799999999987553
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-05 Score=85.85 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=39.1
Q ss_pred CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 219 G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
|++|+.+++|++|..++++++|.+.+|++++||.||.|.+...
T Consensus 226 g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 268 (520)
T 1s3e_A 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL 268 (520)
T ss_dssp GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGG
T ss_pred CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHH
Confidence 7799999999999988888999988898999999999999765
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-06 Score=89.92 Aligned_cols=108 Identities=16% Similarity=0.286 Sum_probs=69.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCC--cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.+|||||||| +|+++|..|+++|+ +|+|||+.+.....+. .++ ..+-.+...
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-~l~-----------------------~~~~~~~~~- 58 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLP-PLS-----------------------KAYLAGKAT- 58 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSG-GGG-----------------------TTTTTTCSC-
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCC-CCc-----------------------HHHhCCCCC-
Confidence 5899999976 58889999999998 7999998764321110 000 000000000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
...+. .. +.+.+.+.|++++.+++|+.++.++. .|++++|+++++|.||.|+|..+
T Consensus 59 --~~~~~--------~~-------~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~p 114 (431)
T 1q1r_A 59 --AESLY--------LR-------TPDAYAAQNIQLLGGTQVTAINRDRQ--QVILSDGRALDYDRLVLATGGRP 114 (431)
T ss_dssp --SGGGB--------SS-------CHHHHHHTTEEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEEE
T ss_pred --hHHhc--------cc-------CHHHHHhCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEcCCCCc
Confidence 00010 00 01223456889999999999876544 56677888999999999999865
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.9e-06 Score=91.06 Aligned_cols=141 Identities=21% Similarity=0.212 Sum_probs=72.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-CCcccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+||||||||| +|+++|..|+++|++|+||||.+..+ ....+. +.... .+....++ +......+....+..
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~--l~~~~~~~-----~~~~~~~~~~~g~~~ 78 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKA--LLNNSHYY-----HMAHGTDFASRGIEM 78 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHH--HHHHHHHH-----HHHHSSHHHHTTEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHH--HHHHHHHH-----HHhhhhhHhhCcccc
Confidence 6999999976 58889999999999999999986433 111000 10000 11000000 000000000000000
Q ss_pred cCCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC-C-cEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-G-KILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d-G-~~i~ArlVI~ADG~~S 261 (549)
. ...+..+...... --...+...+.+.+.+.|++++.++.+ . .+++.+.|.+.+ + +++++|.||.|+|..+
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~--~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p 152 (474)
T 1zmd_A 79 S-EVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-I--TGKNQVTATKADGGTQVIDTKNILIATGSEV 152 (474)
T ss_dssp S-CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-E--EETTEEEEECTTSCEEEEEEEEEEECCCEEE
T ss_pred C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-E--ecCCEEEEEecCCCcEEEEeCEEEECCCCCC
Confidence 0 0000000000000 000123334456666779999988653 2 356778888766 4 5799999999999764
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.6e-06 Score=90.36 Aligned_cols=34 Identities=35% Similarity=0.454 Sum_probs=30.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
+|||+||||| .|+++|..|+++|++|+||||.+.
T Consensus 3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~ 37 (476)
T 3lad_A 3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG 37 (476)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 6999999976 588899999999999999999873
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.3e-05 Score=91.31 Aligned_cols=41 Identities=15% Similarity=0.034 Sum_probs=37.6
Q ss_pred cCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 218 ~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
.|++|+.+++|++|..++++++|++.+|++++||.||.|..
T Consensus 542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P 582 (776)
T 4gut_A 542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP 582 (776)
T ss_dssp TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCC
T ss_pred hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCC
Confidence 47899999999999998889999998898999999999995
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.3e-05 Score=83.11 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=30.0
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.+|||+||||| +|+++|..|++.|++|+||||.+
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~ 65 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT 65 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 36999999975 58888999999999999999965
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=5e-05 Score=80.39 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=36.9
Q ss_pred cCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCC
Q 008915 218 LGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 218 ~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.|++|+.+++|++|..++++ +.|++ +|++++||.||.|.+..
T Consensus 225 lg~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~ 267 (453)
T 2yg5_A 225 LGDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPN 267 (453)
T ss_dssp HGGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGG
T ss_pred cCCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHH
Confidence 37899999999999999888 88876 67789999999999865
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-05 Score=84.83 Aligned_cols=132 Identities=16% Similarity=0.060 Sum_probs=70.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC-Ccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~-~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+|||+||||| +|+++|..|+++|++|+||||....+. ...+. +....+ +..... .+.. ..+...
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l--~~~a~~-----~~~~--~~~~~~---- 70 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTV--REVIQT-----AWRL--TNIANV---- 70 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHH--HHHHHH-----HHHH--HHHHCS----
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHH--HHHHHH-----HHHH--HhcccC----
Confidence 5999999976 588899999999999999997664431 10000 000000 000000 0000 000000
Q ss_pred cCCccccccccccceeCHHHHH--HHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcE--EEcCEEEEccCC
Q 008915 187 EGKGEIWVEDILNLGVSPAKLI--EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKI--LSSHLIIDAMGN 259 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~--~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~--i~ArlVI~ADG~ 259 (549)
...+..+......-.-..+. ..+.+.+.+.|++++.+ +++.+ +++.+.|..++|++ +++|.||.|+|.
T Consensus 71 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~i--d~~~~~V~~~~g~~~~~~~d~lviAtG~ 142 (466)
T 3l8k_A 71 --KIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIK--DPTHVIVKTDEGKEIEAETRYMIIASGA 142 (466)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEE--ETTEEEEEETTSCEEEEEEEEEEECCCE
T ss_pred --CCCcCHHHHHHHHHhheeccccchHHHHHHhCCCEEEEe-EEEEe--cCCeEEEEcCCCcEEEEecCEEEECCCC
Confidence 00000000000000000022 44445555668888776 55554 46788888888887 999999999996
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-05 Score=86.98 Aligned_cols=138 Identities=19% Similarity=0.212 Sum_probs=70.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc---CCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN---ISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~---IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
+|||+||||| +|+++|..|+++|++|+||||....+.. +++ +....+ +... +........+....+.
T Consensus 25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~-~~~~gciP~k~l--~~~~------~~~~~~~~~~~~~g~~ 95 (491)
T 3urh_A 25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGT-CLNVGCIPSKAL--LHAS------EMFHQAQHGLEALGVE 95 (491)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH-HHHHSHHHHHHH--HHHH------HHHHHHHHSSGGGTEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCc-cccccchhhHHH--HHHH------HHHHHHHhhHhhcCcc
Confidence 5999999976 5888999999999999999987544311 111 100100 0000 0000000000000000
Q ss_pred ccCCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCC
Q 008915 186 FEGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF 260 (549)
Q Consensus 186 f~~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~ 260 (549)
.. ...+..+...... -....+...+...+...+++++.++... .+++.+.|...+| .++++|.||-|+|..
T Consensus 96 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~~v~~~~g~~~~~~~d~lViATGs~ 169 (491)
T 3urh_A 96 VA-NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKV---LGQGKVSVTNEKGEEQVLEAKNVVIATGSD 169 (491)
T ss_dssp CC-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---CSSSEEEEECTTSCEEEEECSEEEECCCEE
T ss_pred cC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ecCCEEEEEeCCCceEEEEeCEEEEccCCC
Confidence 00 0000000000000 0001223334455566788988876432 4556777877666 479999999999965
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-05 Score=86.25 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=73.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-CCcccc-CCHHHHHHHHHcCCCCcccchhhh--hhccCCCcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWN-ISRKELLELVESGILVEDDIDEAT--ATKFNPNRC 184 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i--~~~~~~~~i 184 (549)
+|||+||||| +|+++|..|++.|++|+||||.+..+ ....+. +.... .+....+ .+... ...+ .+
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~--l~~~~~~-----~~~~~~~~~~~---g~ 71 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKA--LLHATHL-----YHDAHANFARY---GL 71 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHH--HHHHHHH-----HHHHHHTHHHH---TE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHH--HHHHHHH-----HHHHHHHHHhc---Cc
Confidence 5999999976 58889999999999999999985433 111000 11010 0100000 00000 0000 00
Q ss_pred cccCCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCCh
Q 008915 185 GFEGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 185 ~f~~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~S 261 (549)
.+.....+..+...... --...+...+.+.+.+.|++++.++.+. .+++.+.|.+.+| .+++++.||.|+|...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~---i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p 148 (468)
T 2qae_A 72 MGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSF---ETAHSIRVNGLDGKQEMLETKKTIIATGSEP 148 (468)
T ss_dssp ECGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE---EETTEEEEEETTSCEEEEEEEEEEECCCEEE
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---eeCCEEEEEecCCceEEEEcCEEEECCCCCc
Confidence 00000000000000000 0001233344555666789998887542 4667888888777 6899999999999743
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=4.4e-05 Score=81.33 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=76.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||||| .|+-+|..|++.|.+|.|+|+.+..... +
T Consensus 168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~--------------------------------------~--- 206 (455)
T 2yqu_A 168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT--------------------------------------M--- 206 (455)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT--------------------------------------S---
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc--------------------------------------c---
Confidence 359999976 5999999999999999999986531100 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+ ..+.+.+.+.+++.|++++.+++|+++..+++++.+++++|+++.++.||.|+|..+..
T Consensus 207 -------------~-~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~ 266 (455)
T 2yqu_A 207 -------------D-LEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT 266 (455)
T ss_dssp -------------C-HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred -------------C-HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence 0 12334455666677999999999999998888888888788899999999999988754
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=97.96 E-value=7.1e-06 Score=87.45 Aligned_cols=111 Identities=15% Similarity=0.068 Sum_probs=68.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
||||||||| +|+++|..|+++ |++|+|||+.+......+ .+... --|.. . . +.+
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~------~~~~~-~~g~~-----~-----~-----~~~- 57 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC------GIALY-LGKEI-----K-----N-----NDP- 57 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG------GHHHH-HTTCB-----G-----G-----GCG-
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc------cchhh-hcCCc-----c-----c-----CCH-
Confidence 699999976 588888899988 999999999874331111 00000 00000 0 0 000
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc-C--CcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-E--GKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-d--G~~i~ArlVI~ADG~~S 261 (549)
..+.. . +.+.+.+.|++++.+++++.++.+++.+.+... + +.+++++.||.|+|...
T Consensus 58 --~~~~~--------~-------~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p 117 (452)
T 2cdu_A 58 --RGLFY--------S-------SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKP 117 (452)
T ss_dssp --GGGBS--------C-------CHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred --HHhhh--------c-------CHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCc
Confidence 00000 0 112234568999999999998776777766542 2 45799999999999643
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=5.4e-05 Score=81.05 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=76.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||||| .|+-+|..|++.|.+|.|+|+.+.....
T Consensus 170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 207 (464)
T 2eq6_A 170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ------------------------------------------ 207 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------------------------------
Confidence 369999976 5999999999999999999986521100
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc-C--Cc--EEEcCEEEEccCCChHH
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-E--GK--ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-d--G~--~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+++.|++++.+++++++..+++++.|+++ + |+ ++.+|+||.|.|..+..
T Consensus 208 ------------~~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~ 273 (464)
T 2eq6_A 208 ------------GD-PETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT 273 (464)
T ss_dssp ------------SC-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred ------------cC-HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence 00 123345566677789999999999999988888888876 6 76 89999999999987654
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.3e-05 Score=86.19 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=69.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.+|||||||| +|+++|..|++. |.+|+|||+.+......+ .+ ..+ ....+ ..
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-~~-----~~~--------------~~~~~----~~- 90 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC-GL-----PYV--------------ISGAI----AS- 90 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG-GH-----HHH--------------HTTSS----SC-
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC-Cc-----chh--------------hcCCc----CC-
Confidence 4799999976 588888899986 999999999875432111 01 000 00000 00
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHH-HhcCCEEEeCceEEEEEEECCEEEEEE-cCCc--EEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a-~~~G~~v~~~t~v~~i~~~~dgv~V~~-~dG~--~i~ArlVI~ADG~~S 261 (549)
...+.. . ..+.+ ...|++++.+++|+.++.+++.+.+.. .+|+ ++++|.||.|+|...
T Consensus 91 --~~~l~~-~--------------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p 152 (480)
T 3cgb_A 91 --TEKLIA-R--------------NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRP 152 (480)
T ss_dssp --GGGGBS-S--------------CHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred --HHHhhh-c--------------CHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcc
Confidence 000000 0 01122 234889999999999987777777765 4566 799999999999643
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1e-05 Score=85.88 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=69.1
Q ss_pred cccEEEEcch-HHHHHHHHHHh---CCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr---~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
..|||||||| +|+++|..|++ .|++|+|||+.+...... .+..+ ..|.
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~-------~~~~~-~~g~-------------------- 55 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVP-------SNPWV-GVGW-------------------- 55 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGG-------GHHHH-HHTS--------------------
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccC-------Ccccc-ccCc--------------------
Confidence 4799999976 59999999998 899999999886321100 00000 0000
Q ss_pred ccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 186 f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.++..+...+.+.+.+.|++++ ..+++.++.++. .|++++|+++++|.||.|+|..+.
T Consensus 56 ----------------~~~~~~~~~l~~~~~~~gv~~~-~~~v~~id~~~~--~V~~~~g~~i~~d~lviAtG~~~~ 113 (437)
T 3sx6_A 56 ----------------KERDDIAFPIRHYVERKGIHFI-AQSAEQIDAEAQ--NITLADGNTVHYDYLMIATGPKLA 113 (437)
T ss_dssp ----------------SCHHHHEEECHHHHHTTTCEEE-CSCEEEEETTTT--EEEETTSCEEECSEEEECCCCEEC
T ss_pred ----------------cCHHHHHHHHHHHHHHCCCEEE-EeEEEEEEcCCC--EEEECCCCEEECCEEEECCCCCcC
Confidence 0111111123344456788887 468888865544 567778889999999999998654
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.8e-05 Score=83.26 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=69.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCc--EEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLR--VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~Glr--VlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
++|||||||| +|+++|..|+++|++ |+|||+.+.....+. .++ ..+-.+...
T Consensus 9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-~l~-----------------------~~~~~~~~~- 63 (415)
T 3lxd_A 9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP-PLS-----------------------KEYLAREKT- 63 (415)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG-GGG-----------------------TTTTTTSSC-
T ss_pred CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc-cCC-----------------------HHHHcCCCC-
Confidence 6999999976 599999999999988 999999875432111 000 001000000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
...+. ... .+.+.+.+++++.+++++.++.+. ..|.+.+|+++.++.||.|+|..
T Consensus 64 --~~~~~--------~~~-------~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~~d~lvlAtG~~ 118 (415)
T 3lxd_A 64 --FERIC--------IRP-------AQFWEDKAVEMKLGAEVVSLDPAA--HTVKLGDGSAIEYGKLIWATGGD 118 (415)
T ss_dssp --SGGGB--------SSC-------HHHHHHTTEEEEETCCEEEEETTT--TEEEETTSCEEEEEEEEECCCEE
T ss_pred --HHHhc--------cCC-------HHHHHHCCcEEEeCCEEEEEECCC--CEEEECCCCEEEeeEEEEccCCc
Confidence 00010 000 122345688999999999986544 35677788899999999999953
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.4e-05 Score=84.10 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=71.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCcccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+||||||||| +|+++|..|++.|++|+||||....+....+. +....+..-. .+-..+ .. .....+.
T Consensus 11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~n~gciP~k~l~~~~--------~~~~~~-~~--~~~~g~~ 79 (479)
T 2hqm_A 11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKALGGTCVNVGCVPKKVMWYAS--------DLATRV-SH--ANEYGLY 79 (479)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSCTTHHHHHHSHHHHHHHHHHH--------HHHHHH-TT--TTTTTBS
T ss_pred cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCCcCCcCcccCcHHHHHHHHHH--------HHHHHH-Hh--HHhcCcc
Confidence 6999999976 58889999999999999999985433211000 1111100000 000000 00 0000110
Q ss_pred C-------Cccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc--EEEcCEEEEcc
Q 008915 188 G-------KGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAM 257 (549)
Q Consensus 188 ~-------~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~--~i~ArlVI~AD 257 (549)
. ...+..+...... --...+...+.+.+.+.|++++.++ ++.+ +++.+.|.+.+|+ ++++|.||.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i--~~~~~~v~~~~g~~~~~~~d~lviAt 156 (479)
T 2hqm_A 80 QNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFN--KDGNVEVQKRDNTTEVYSANHILVAT 156 (479)
T ss_dssp TTSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEEC--TTSCEEEEESSSCCEEEEEEEEEECC
T ss_pred cccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe--eCCEEEEEeCCCcEEEEEeCEEEEcC
Confidence 0 0000000000000 0001233445555666788888774 4443 4556777776776 89999999999
Q ss_pred CCC
Q 008915 258 GNF 260 (549)
Q Consensus 258 G~~ 260 (549)
|..
T Consensus 157 Gs~ 159 (479)
T 2hqm_A 157 GGK 159 (479)
T ss_dssp CEE
T ss_pred CCC
Confidence 964
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=8.9e-05 Score=79.02 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=74.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+.+-. .
T Consensus 169 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------ 205 (450)
T 1ges_A 169 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-------------------------------S------------ 205 (450)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T------------
T ss_pred eEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-------------------------------h------------
Confidence 59999977 599999999999999999998642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+++.|++++.+++++++..++++ +.|.+++|+++.++.||.|.|..+..
T Consensus 206 -----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~ 267 (450)
T 1ges_A 206 -----------FD-PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN 267 (450)
T ss_dssp -----------SC-HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred -----------hh-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 00 013344556667779999999999999876654 77888888899999999999987654
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.1e-05 Score=81.43 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=65.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.+|||||||| +|+++|..|++. |++|+|||+.+......+ ++. ... .+.
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~--------------~~p------~~~-----~~~--- 54 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC--------------GIP------YVV-----EGL--- 54 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc--------------CCc------ccc-----CCC---
Confidence 4799999976 588999999987 899999999874331100 000 000 000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHH-HhcCCEEEeCceEEEEEEECCEEEEEEcCC-cEEEcCEEEEccCCC
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNF 260 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a-~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG-~~i~ArlVI~ADG~~ 260 (549)
.++..+.....+.+ .+.|++++.+++|++++ .+...|.++++ .++++|.||-|+|..
T Consensus 55 ---------------~~~~~~~~~~~~~~~~~~gi~v~~~~~v~~i~--~~~~~v~~~~g~~~~~~d~lviAtG~~ 113 (449)
T 3kd9_A 55 ---------------STPDKLMYYPPEVFIKKRGIDLHLNAEVIEVD--TGYVRVRENGGEKSYEWDYLVFANGAS 113 (449)
T ss_dssp --------------------------CTHHHHTTCEEETTCEEEEEC--SSEEEEECSSSEEEEECSEEEECCCEE
T ss_pred ---------------CCHHHhhhcCHHHHHHhcCcEEEecCEEEEEe--cCCCEEEECCceEEEEcCEEEECCCCC
Confidence 00001111111222 35688999999999874 44567777666 489999999999953
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.9e-05 Score=83.50 Aligned_cols=37 Identities=35% Similarity=0.401 Sum_probs=31.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+||||||||| +|+++|..|+++|++|+||||....+
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~GG 62 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYRIGG 62 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence 36999999976 58889999999999999999955433
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=8.4e-06 Score=86.99 Aligned_cols=138 Identities=18% Similarity=0.135 Sum_probs=70.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC-CCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~-~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+|||+||||| +|+++|..|++.|++|+|||+.+..+ ....+...+ +...+....++ +.. .. ....+.+.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p-~k~l~~~~~~~-----~~~-~~--~~~g~~~~ 71 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIP-SKALLETTERI-----YEA-KK--GLLGAKVK 71 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHH-HHHHHHHHHHH-----HHH-HH--CCTTEEEC
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchh-HHHHHHHHHHH-----HHH-hh--hcCCcccC
Confidence 4899999975 58889999999999999999985433 111111001 00011100000 001 00 00001110
Q ss_pred CCcccccccccccee-CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGV-SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V-~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. .....+......- -...+...+.+.+.+.|++++.++.+. .+++.+.|.+ +|.+++++.||.|+|...
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~---i~~~~~~v~~-~g~~~~~d~lviAtG~~p 141 (455)
T 2yqu_A 72 G-VELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARF---LSERKVLVEE-TGEELEARYILIATGSAP 141 (455)
T ss_dssp C-EEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE---SSSSEEEETT-TCCEEEEEEEEECCCEEE
T ss_pred C-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEee-CCEEEEecEEEECCCCCC
Confidence 0 0000000000000 001133334555666789998887542 3455666655 677899999999999743
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=9.2e-05 Score=79.70 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=29.6
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.+||||||||| +|+++|..|++.|++|+||||..
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~ 39 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE 39 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence 37999999975 58888999999999999999843
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2e-05 Score=83.84 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=67.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
+|||||||| +|+++|..|++. |.+|+|||+.+..+...+ .+.... -+. + .
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~------~~~~~~-~~~-------------~-------~ 53 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSA------GMQLYL-EGK-------------V-------K 53 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGG------GHHHHH-TTS-------------S-------C
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccc------cchhhh-cCc-------------c-------C
Confidence 489999976 588888899987 999999999875431110 000000 000 0 0
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE-cCCc--EEEcCEEEEccCCC
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~dG~--~i~ArlVI~ADG~~ 260 (549)
....+.. . +.+.+.+.|++++.+++++.++.+++.+.+.. .+|+ +++++.||.|+|..
T Consensus 54 ~~~~~~~--------~-------~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~ 114 (447)
T 1nhp_A 54 DVNSVRY--------M-------TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAV 114 (447)
T ss_dssp CGGGSBS--------C-------CHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred CHHHhhc--------C-------CHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCC
Confidence 0000100 0 01223346899999999999877777776654 3455 49999999999964
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.4e-05 Score=83.70 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=30.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
+|||+||||| .|+++|..|+++|++|+||||....
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~~G 40 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYG 40 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTT
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence 6999999976 5888999999999999999995443
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=8.5e-05 Score=79.83 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=28.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
.+||||||||| .|+++|..|+++|++|+||||.
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~ 41 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV 41 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence 36999999976 5888888999999999999963
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=3.5e-05 Score=83.28 Aligned_cols=142 Identities=13% Similarity=0.135 Sum_probs=72.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhC---CCcEEEEccCCCCCCCcccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK---GLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRC 184 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~---GlrVlLIEr~~~~~~~r~~~-IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i 184 (549)
+||||||||| +|+++|..|+++ |++|+||||....+....+. +.... .+....++ . .+ ..+....+
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~~GG~~~~~g~~psk~--l~~~a~~~-----~-~~-~~~~~~g~ 72 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKT--FIASTGLR-----T-EL-RRAPHLGF 72 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHH--HHHHHHHH-----H-HH-TTTTTTTB
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCCcCCcccCcCccchHH--HHHHHHHH-----H-HH-HHHHhCCC
Confidence 5899999976 588899999998 99999999987433211111 11011 01000000 0 00 01100001
Q ss_pred cc-cCCcccccccccccee-CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE----CCEEEEEEcCCc--EEEcCEEEEc
Q 008915 185 GF-EGKGEIWVEDILNLGV-SPAKLIEIVKKRFISLGGVIFEGYSVSSICTY----ENAAVLLLAEGK--ILSSHLIIDA 256 (549)
Q Consensus 185 ~f-~~~~~l~~~~~l~~~V-~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~----~dgv~V~~~dG~--~i~ArlVI~A 256 (549)
.+ .+...+..+......- -...+...+.+.+.+.|++++.++ ++.++.. ++.+.|..++|+ +++++.||.|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviA 151 (499)
T 1xdi_A 73 HIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVA 151 (499)
T ss_dssp C------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEEC
T ss_pred ccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEc
Confidence 00 0000000000000000 001233445666677899999886 5544321 145667666676 7999999999
Q ss_pred cCCCh
Q 008915 257 MGNFS 261 (549)
Q Consensus 257 DG~~S 261 (549)
+|...
T Consensus 152 TGs~p 156 (499)
T 1xdi_A 152 TGASP 156 (499)
T ss_dssp CCEEE
T ss_pred CCCCC
Confidence 99643
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=8.2e-05 Score=80.58 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=46.2
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC--------EEEEEEcCC-----cEEEcCEEEEccCC
Q 008915 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--------AAVLLLAEG-----KILSSHLIIDAMGN 259 (549)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d--------gv~V~~~dG-----~~i~ArlVI~ADG~ 259 (549)
..+..+.+.|...+.+.+..++++++|+++...++ .++|++.++ ++++||.||.|.|.
T Consensus 142 p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~ 212 (501)
T 4b63_A 142 PARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG 212 (501)
T ss_dssp CBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence 45677888888888776778999999999987553 478887643 27999999999995
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.4e-05 Score=83.33 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=68.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.|||||||| +|+++|..|+++ |++|+||||.+..+.... ++. .... +...
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~--------------~~~------~~~~-----~~~~-- 55 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSG--------------GLS------AYFN-----HTIN-- 55 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCc--------------cch------hhhc-----CCCC--
Confidence 699999976 588999999988 999999999875442111 000 0000 0000
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc-CCcEEEcCEEEEccCCC
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMGNF 260 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-dG~~i~ArlVI~ADG~~ 260 (549)
....+. . .+.+.+.+.|++++.+++|++++.++..+.+... ++.+++++.||-|+|..
T Consensus 56 ~~~~~~--------~-------~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~ 114 (452)
T 3oc4_A 56 ELHEAR--------Y-------ITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGAS 114 (452)
T ss_dssp -----C--------C-------CCHHHHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCC
T ss_pred CHHHhh--------c-------CCHHHHHHCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcc
Confidence 000000 0 0112234568899999999999887777777633 35589999999999984
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=6.5e-05 Score=80.32 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=30.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
+||||||||| +|+++|..|+++|++|+||||....
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~G 39 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIG 39 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 6999999976 5888999999999999999998543
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.74 E-value=3.3e-05 Score=82.84 Aligned_cols=36 Identities=36% Similarity=0.529 Sum_probs=31.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+|||+||||| .|+++|..|+++|++|+||||....+
T Consensus 20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~~GG 56 (478)
T 3dk9_A 20 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGG 56 (478)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 6999999976 58889999999999999999876544
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00038 Score=72.88 Aligned_cols=105 Identities=20% Similarity=0.311 Sum_probs=79.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++|+.+.... .
T Consensus 144 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------~- 180 (404)
T 3fg2_P 144 HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA------------------------------------------R- 180 (404)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT------------------------------------------T-
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh------------------------------------------h-
Confidence 59999976 599999999999999999998652100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCCh--HHHHHh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFS--PVVKQI 267 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S--~vrrql 267 (549)
. .+ ..+.+.+.+.+++.|++++.+++++++..+++.+. |.+++|+++.||+||-|.|... .+.+.+
T Consensus 181 ~----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~ 249 (404)
T 3fg2_P 181 V----------VT-PEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAA 249 (404)
T ss_dssp T----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHT
T ss_pred c----------cC-HHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhC
Confidence 0 00 12445566777788999999999999988777654 7888999999999999999854 456666
Q ss_pred cCC
Q 008915 268 RSG 270 (549)
Q Consensus 268 ~~~ 270 (549)
+..
T Consensus 250 gl~ 252 (404)
T 3fg2_P 250 GLP 252 (404)
T ss_dssp TCC
T ss_pred CCC
Confidence 543
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.72 E-value=3.2e-05 Score=80.90 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=68.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
..-|+||||| +|+++|..|++.|.+|+|||+.+.....+. .++ . .+.....
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~-~l~-----~--------------~l~g~~~-------- 60 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRP-RLN-----E--------------IIAKNKS-------- 60 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGG-GHH-----H--------------HHHSCCC--------
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccC-hhh-----H--------------HHcCCCC--------
Confidence 3569999976 588888899888999999999876442221 011 0 0000000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
...+.. . ..+.+.+.|++++.+++|++++.++. .|++++|+++.+|.||-|+|.
T Consensus 61 ~~~l~~--------~-------~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~ 114 (385)
T 3klj_A 61 IDDILI--------K-------KNDWYEKNNIKVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGS 114 (385)
T ss_dssp GGGTBS--------S-------CHHHHHHTTCEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCE
T ss_pred HHHccC--------C-------CHHHHHHCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCC
Confidence 001110 0 01223356899999999999976554 567778889999999999996
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=4.9e-05 Score=81.38 Aligned_cols=35 Identities=34% Similarity=0.419 Sum_probs=30.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
+||||||||| +|+++|..|++.|++|+|||+....
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~~G 41 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGEVG 41 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 5999999976 5888888999999999999998743
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.71 E-value=4.4e-05 Score=80.09 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=66.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC--cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.|||||||| +|+++|..|+++|+ +|+|||+.+.....+. .++ ..+-.+...
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-~l~-----------------------~~~l~~~~~-- 55 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP-PLS-----------------------KAYLKSGGD-- 55 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG-GGG-----------------------TGGGGSCCC--
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc-cCC-----------------------HHHHCCCCC--
Confidence 489999976 58899999999999 8999999874332111 000 000000000
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
...+.. . ..+.+.+.+++++. ++++.++.+.. .|.+.+|+++.++.||-|+|..
T Consensus 56 -~~~~~~--------~-------~~~~~~~~~i~~~~-~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~ 109 (404)
T 3fg2_P 56 -PNSLMF--------R-------PEKFFQDQAIELIS-DRMVSIDREGR--KLLLASGTAIEYGHLVLATGAR 109 (404)
T ss_dssp -TTSSBS--------S-------CHHHHHHTTEEEEC-CCEEEEETTTT--EEEESSSCEEECSEEEECCCEE
T ss_pred -HHHccC--------C-------CHHHHHhCCCEEEE-EEEEEEECCCC--EEEECCCCEEECCEEEEeeCCC
Confidence 000100 0 01223346888888 99999865544 5667788899999999999963
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0002 Score=76.67 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=75.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+.+-. . +
T Consensus 168 ~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~-------~---- 205 (463)
T 2r9z_A 168 RVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF-------------------------------Q-------F---- 205 (463)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T-------S----
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc-------------------------------c-------c----
Confidence 59999976 599999999999999999998642100 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc-EEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~-~i~ArlVI~ADG~~S~v 263 (549)
+ ..+.+.+.+.+++.|++++.+++++++..+++++.|++++|+ ++.+|.||.|.|..+..
T Consensus 206 ------------~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 266 (463)
T 2r9z_A 206 ------------D-PLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT 266 (463)
T ss_dssp ------------C-HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred ------------C-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence 0 012234556667789999999999999988788888888898 89999999999987643
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=5.1e-05 Score=83.63 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=70.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
..||+||||| +|+++|..|+++ |++|+||||.+..+...+ .+.. .+ .+.+.
T Consensus 36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~------~lp~--------------~~-----~g~~~- 89 (588)
T 3ics_A 36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANC------GLPY--------------YI-----GGVIT- 89 (588)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG------GHHH--------------HH-----TTSSC-
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCC------CCch--------------hh-----cCcCC-
Confidence 5899999976 588999999988 999999999876442111 0000 00 00000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE-cCCc--EEEcCEEEEccCCC
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~dG~--~i~ArlVI~ADG~~ 260 (549)
....+. ...+...+...|++++.+++|++++.+++.+.+.. .+|. +++++.||.|+|..
T Consensus 90 -~~~~~~--------------~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~ 151 (588)
T 3ics_A 90 -ERQKLL--------------VQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAK 151 (588)
T ss_dssp -CGGGGB--------------SSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred -ChHHhh--------------ccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCC
Confidence 000000 00112223346889999999999988777777764 3455 78999999999963
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=2.9e-05 Score=80.60 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=64.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-||+||||| +|+++|..|++.| +|+|||+.+.....+. .++ . .+ .| .+.+
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~-~l~-~---~~--~g------------------~~~~--- 59 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKP-MLS-H---YI--AG------------------FIPR--- 59 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCST-THH-H---HH--TT------------------SSCG---
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccc-hhH-H---HH--hC------------------CCCH---
Confidence 589999976 5888888999999 9999999875432111 010 0 00 01 0000
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
..+.. . . .+.+.+.|++++.+++++.++.+. ..|+ .+|+++++|.||-|+|..
T Consensus 60 ~~~~~-~----------~----~~~~~~~~v~~~~g~~v~~id~~~--~~V~-~~g~~~~~d~lViATGs~ 112 (367)
T 1xhc_A 60 NRLFP-Y----------S----LDWYRKRGIEIRLAEEAKLIDRGR--KVVI-TEKGEVPYDTLVLATGAR 112 (367)
T ss_dssp GGGCS-S----------C----HHHHHHHTEEEECSCCEEEEETTT--TEEE-ESSCEEECSEEEECCCEE
T ss_pred HHhcc-C----------C----HHHHHhCCcEEEECCEEEEEECCC--CEEE-ECCcEEECCEEEECCCCC
Confidence 00100 0 0 112234588999999998886543 3455 577889999999999964
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2.6e-05 Score=81.83 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=64.7
Q ss_pred ccEEEEcch-HHHHHHHHHHh---CCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 111 FDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr---~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.|||||||| +|+++|..|++ .|++|+|||+++....... +. ....+..
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~----------------~~----------~~~~~~~-- 53 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPA----------------LP----------HVAIGVR-- 53 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCS----------------SC----------CCCSSCC--
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccc----------------hh----------hcccCCc--
Confidence 479999976 58899999999 8999999999873211000 00 0000000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCc----EEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK----ILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~----~i~ArlVI~ADG~~S 261 (549)
....+ . ..+.+.+.+.|++++.+ +|+.++.++..++ ++++. ++++|.||.|+|...
T Consensus 54 -~~~~~--------~-------~~~~~~~~~~gv~~~~~-~v~~i~~~~~~V~--~~~g~~~~~~~~~d~lViAtG~~~ 113 (409)
T 3h8l_A 54 -DVDEL--------K-------VDLSEALPEKGIQFQEG-TVEKIDAKSSMVY--YTKPDGSMAEEEYDYVIVGIGAHL 113 (409)
T ss_dssp -CCCCE--------E-------EEHHHHTGGGTCEEEEC-EEEEEETTTTEEE--EECTTSCEEEEECSEEEECCCCEE
T ss_pred -CHHHH--------H-------HHHHHHHhhCCeEEEEe-eEEEEeCCCCEEE--EccCCcccceeeCCEEEECCCCCc
Confidence 00010 0 11233444568999877 8888876555444 44443 499999999999854
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00024 Score=79.97 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc---CCcEEEcCEEEEccCCC
Q 008915 208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNF 260 (549)
Q Consensus 208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---dG~~i~ArlVI~ADG~~ 260 (549)
...+.+.+++.|++++.+++|+++. ++++.+... +++++.||.||-|.|..
T Consensus 570 ~~~l~~~l~~~GV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~i~aD~VV~A~G~~ 623 (690)
T 3k30_A 570 VNRIQRRLIENGVARVTDHAVVAVG--AGGVTVRDTYASIERELECDAVVMVTARL 623 (690)
T ss_dssp HHHHHHHHHHTTCEEEESEEEEEEE--TTEEEEEETTTCCEEEEECSEEEEESCEE
T ss_pred HHHHHHHHHHCCCEEEcCcEEEEEE--CCeEEEEEccCCeEEEEECCEEEECCCCC
Confidence 4567778888899999999999985 456666542 34589999999999964
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.64 E-value=6.3e-05 Score=81.28 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=71.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
++||+||||| +|+++|..|+++ ++|+|||+.+.++.... .. . ..+ ..+
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~-~~--------------~---------~~~----~g~-- 156 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMW-LK--------------G---------IKQ----EGF-- 156 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG-GT--------------C---------SEE----TTT--
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee-cc--------------c---------ccc----CCC--
Confidence 5899999976 599999999999 99999999875432100 00 0 000 000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE-cCCc--EEEcCEEEEccCCC
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~dG~--~i~ArlVI~ADG~~ 260 (549)
+. +...+...+.+.+ ..+++++.++++.++..+++.+.+.. ++++ +++++.||.|+|..
T Consensus 157 ------~~------~~~~~~~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~ 218 (493)
T 1y56_A 157 ------NK------DSRKVVEELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAI 218 (493)
T ss_dssp ------TE------EHHHHHHHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEE
T ss_pred ------CC------CHHHHHHHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCC
Confidence 00 1233444444444 56889999999999887776665544 3454 69999999999964
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00026 Score=75.32 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=74.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-+|+||||| .|+-+|..|++.|.+|.|+|+.+... . .
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------------------~---------------------~ 208 (455)
T 1ebd_A 171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL---------------------S---------------------G 208 (455)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS---------------------T---------------------T
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc---------------------c---------------------c
Confidence 469999976 59999999999999999999864211 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc---CCcEEEcCEEEEccCCChH
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---dG~~i~ArlVI~ADG~~S~ 262 (549)
.+ ..+.+.+.+.+++.|++++.+++++++..+++++.+++. +++++.++.||.|.|....
T Consensus 209 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 271 (455)
T 1ebd_A 209 ------------FE-KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPN 271 (455)
T ss_dssp ------------SC-HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred ------------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence 00 123344566677789999999999999888777777765 3468999999999997754
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.9e-05 Score=81.89 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEE--CCEE-EEEEcCCcEEEcCEEEEccCCChH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTY--ENAA-VLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~--~dgv-~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.+-+.|.+.+++.|++++.+++|+++..+ ++++ .|.+ +|++++|+.||.|.|..+.
T Consensus 243 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 243 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 46677888888889999999999999988 6665 3555 6888999999999998864
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00026 Score=76.03 Aligned_cols=97 Identities=21% Similarity=0.372 Sum_probs=76.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+|+||| .|+-+|..|++.|.+|.++++.+..-. .+
T Consensus 192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~~---------- 230 (484)
T 3o0h_A 192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR-------------------------------NF---------- 230 (484)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------TS----------
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc-------------------------------cc----------
Confidence 368999976 599999999999999999998652100 00
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
+ ..+.+.+.+.+++.|++++.+++|+++..+++++.|.+++|+++.||.||.|.|..+.
T Consensus 231 -------------~-~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~ 289 (484)
T 3o0h_A 231 -------------D-YDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPN 289 (484)
T ss_dssp -------------C-HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred -------------C-HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcC
Confidence 0 1233445666777899999999999999888888899988989999999999998654
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00038 Score=73.09 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=79.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++|+.+.+-. .
T Consensus 154 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~------------------------------------------~- 190 (415)
T 3lxd_A 154 NAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA------------------------------------------R- 190 (415)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------------------T-
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh------------------------------------------h-
Confidence 58999976 599999999999999999998653110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcCCcEEEcCEEEEccCCChH--HHHHh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP--VVKQI 267 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~dG~~i~ArlVI~ADG~~S~--vrrql 267 (549)
. .+ ..+.+.+.+.+++.|++++.+++++++..+++.+ .|.+++|+++.||+||-|.|.... +.+.+
T Consensus 191 ~----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~ 259 (415)
T 3lxd_A 191 V----------AG-EALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISA 259 (415)
T ss_dssp T----------SC-HHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHT
T ss_pred h----------cC-HHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhC
Confidence 0 00 1234556667778899999999999998776665 578888999999999999998654 55555
Q ss_pred cCC
Q 008915 268 RSG 270 (549)
Q Consensus 268 ~~~ 270 (549)
+..
T Consensus 260 gl~ 262 (415)
T 3lxd_A 260 GAS 262 (415)
T ss_dssp TCC
T ss_pred CCC
Confidence 543
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0001 Score=78.93 Aligned_cols=116 Identities=14% Similarity=0.071 Sum_probs=61.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
..||+||||| +|+++|..|+++ |++|+||||.+.....++ |+.. .+ .+.+..
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~--------------gl~~------~~-----~g~~~~ 57 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGC--------------GIPY------YV-----SGEVSN 57 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccccccc--------------ccch------hh-----cCCCCc
Confidence 4699999976 699999999988 999999999875431110 1100 00 000000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE-cCCc--EEEcCEEEEccCCC
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~dG~--~i~ArlVI~ADG~~ 260 (549)
...+. +. +..+...+.......|++++.+++|++++.++..+.+.. .+|. +++++.||.|+|..
T Consensus 58 --~~~~~-~~-------~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~ 124 (472)
T 3iwa_A 58 --IESLQ-AT-------PYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSK 124 (472)
T ss_dssp ---------------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred --hHHhc-cc-------cchhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCC
Confidence 00000 00 000111111122235789999999999987777777664 2355 79999999999963
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00033 Score=74.98 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=73.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||||| .|+-+|..|++.|.+|.++|+.+..... +
T Consensus 184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~----------------------- 222 (478)
T 1v59_A 184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS------------------M----------------------- 222 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS------------------S-----------------------
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc------------------c-----------------------
Confidence 359999976 5999999999999999999987521100 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE--ECCEEEEEEc-----CCcEEEcCEEEEccCCChH
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT--YENAAVLLLA-----EGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~--~~dgv~V~~~-----dG~~i~ArlVI~ADG~~S~ 262 (549)
+ ..+.+.+.+.+++.|++++.+++++++.. +++.+.|.++ +++++.++.||.|.|....
T Consensus 223 -------------~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 288 (478)
T 1v59_A 223 -------------D-GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY 288 (478)
T ss_dssp -------------C-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEEC
T ss_pred -------------C-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcC
Confidence 0 12344556677778999999999999987 4556677765 3468999999999997654
Q ss_pred H
Q 008915 263 V 263 (549)
Q Consensus 263 v 263 (549)
.
T Consensus 289 ~ 289 (478)
T 1v59_A 289 I 289 (478)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00011 Score=79.33 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=27.9
Q ss_pred cccEEEEcch-HHHHHHHHHHh-CCCcEEEEcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSF-KGLRVAIVER 140 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr-~GlrVlLIEr 140 (549)
+|||+||||| +|+++|..|++ .|++|+|||+
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~ 35 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL 35 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 6999999976 58889999999 9999999993
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=4.5e-05 Score=82.47 Aligned_cols=34 Identities=35% Similarity=0.544 Sum_probs=30.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
+||||||||| +|+++|..|++.|++|+|||+...
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~ 36 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRL 36 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSST
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 5999999976 588899999999999999999864
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00056 Score=73.08 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=80.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhC-CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 111 FDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~-GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
-.|+|+||| .|+-+|..|++. |.+|.++|+.+.....
T Consensus 160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~----------------------------------------- 198 (472)
T 3iwa_A 160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG----------------------------------------- 198 (472)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc-----------------------------------------
Confidence 369999976 599999999999 9999999986421000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC--hHHHHH
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF--SPVVKQ 266 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~--S~vrrq 266 (549)
. .+ ..+.+.+.+.+++.|++++.+++++++..+++.+.|.+++|+++.+|.||-|.|.. +.+.+.
T Consensus 199 --~----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~ 265 (472)
T 3iwa_A 199 --F----------TS-KSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARD 265 (472)
T ss_dssp --T----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHH
T ss_pred --c----------cC-HHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHh
Confidence 0 01 12445566777788999999999999988777788888888899999999999985 346666
Q ss_pred hcCC
Q 008915 267 IRSG 270 (549)
Q Consensus 267 l~~~ 270 (549)
+++.
T Consensus 266 ~gl~ 269 (472)
T 3iwa_A 266 AGLE 269 (472)
T ss_dssp HTCC
T ss_pred CCcc
Confidence 6654
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00028 Score=76.65 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=30.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
+||||||||| +|+++|..|++.|++|+|||+...
T Consensus 43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~ 77 (523)
T 1mo9_A 43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF 77 (523)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 6999999976 588899999999999999999873
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.56 E-value=4.3e-05 Score=77.70 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=35.3
Q ss_pred ccCCcEEEeCCCCCCCCCCCCCc--hhhHHHHHHHHHHHHHHHHh
Q 008915 385 AAFNRILQFGDASGIQSPVSFGG--FGSLTRHLGRLSTGVYEAVR 427 (549)
Q Consensus 385 ~~~~rvlLVGDAA~~v~Pltg~G--~g~~lrd~~~La~~i~~Al~ 427 (549)
+.-++++.+||||..++++...| |+.|+.+..+.|+.|.++|+
T Consensus 281 t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~la 325 (326)
T 3fpz_A 281 AGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp TTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence 34578999999999999988767 66777777788888988875
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00022 Score=74.95 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=67.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCC--cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.+||+||||| +|+++|..|+++|. +|+|||+.+.....+. .++. ..+.... .
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-~~~~------------------~~~~~~~------~ 61 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP-PLSK------------------DFMAHGD------A 61 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG-GGGT------------------HHHHHCC------G
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCC-CCCH------------------HHhCCCc------h
Confidence 6899999976 58889999999998 4999999864331111 0110 0000000 0
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
..+. +. .+.+.|++++.+++|+.++.+. ..|++++|++++++.||.|+|...
T Consensus 62 ---~~~~--------~~----------~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~ 113 (408)
T 2gqw_A 62 ---EKIR--------LD----------CKRAPEVEWLLGVTAQSFDPQA--HTVALSDGRTLPYGTLVLATGAAP 113 (408)
T ss_dssp ---GGSB--------CC----------CTTSCSCEEEETCCEEEEETTT--TEEEETTSCEEECSEEEECCCEEE
T ss_pred ---hhhh--------HH----------HHHHCCCEEEcCCEEEEEECCC--CEEEECCCCEEECCEEEECCCCCC
Confidence 0000 01 1234588999999999986543 356677888999999999999754
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=6.7e-05 Score=78.93 Aligned_cols=105 Identities=17% Similarity=0.236 Sum_probs=68.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCc--EEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLR--VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~Glr--VlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.||+||||| +|+++|..|+++|++ |+|||+.+.....+. .++.. .......+
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~-~l~~~------------------~~~g~~~~------ 57 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP-SLSKA------------------VLDGSLER------ 57 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG-GGGTH------------------HHHTSSSS------
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc-cccHH------------------HhCCCCCH------
Confidence 589999976 588999999999988 999999875432211 11100 11000000
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
..+ .. . .+.+.+.+++++.+++++.++.+.. .|.+.+|+++.++.||-|+|..
T Consensus 58 --~~~-~~--------~-------~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~ 110 (410)
T 3ef6_A 58 --PPI-LA--------E-------ADWYGEARIDMLTGPEVTALDVQTR--TISLDDGTTLSADAIVIATGSR 110 (410)
T ss_dssp --CCB-SS--------C-------TTHHHHTTCEEEESCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred --HHh-cC--------C-------HHHHHHCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEccCCc
Confidence 001 00 0 0112346899999999999865443 5677788899999999999964
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00032 Score=74.41 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=72.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
..+|+||||| .|+.+|..|++.|.+|.|+|+.+.+... +
T Consensus 149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~--------- 188 (447)
T 1nhp_A 149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-------------------------------Y--------- 188 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-------------------------------T---------
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc-------------------------------c---------
Confidence 4689999976 5999999999999999999987521100 0
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcCCcEEEcCEEEEccCCChH
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.+ ..+.+.+.+.+++.|++++.+++++++..+ +.+ .|.+ ++.++.++.||.|.|....
T Consensus 189 -------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~d~vi~a~G~~p~ 247 (447)
T 1nhp_A 189 -------------LD-KEFTDVLTEEMEANNITIATGETVERYEGD-GRVQKVVT-DKNAYDADLVVVAVGVRPN 247 (447)
T ss_dssp -------------CC-HHHHHHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred -------------CC-HHHHHHHHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence 00 123456667777889999999999999755 433 3555 5678999999999997654
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=4.3e-05 Score=82.04 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
.+-+.|.+.+.+.|++++.+++|+++..++.. +++.+|++++|+.||-+.-
T Consensus 223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P 273 (513)
T 4gde_A 223 GIWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMA 273 (513)
T ss_dssp HHHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSC
T ss_pred HHHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCC
Confidence 46667777777789999999999999876654 4567899999999997654
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00026 Score=75.74 Aligned_cols=34 Identities=38% Similarity=0.589 Sum_probs=30.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
+||||||||| +|+++|..|++.|++|+|||+...
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~ 38 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKAL 38 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 6999999976 588899999999999999999854
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0002 Score=78.27 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=29.8
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.+||||||||| .|.++|..+|+.|.||+|||+...
T Consensus 41 ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~ 76 (542)
T 4b1b_A 41 YDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP 76 (542)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 36999999976 577788899999999999997654
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00018 Score=74.82 Aligned_cols=106 Identities=10% Similarity=0.064 Sum_probs=64.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCC--CcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~G--lrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
+||||||||| +|+++|..|+++| .+|+|+|+.......+. .+ ... +
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~-~l-------------------~~~----~------- 52 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKP-ML-------------------STG----F------- 52 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGG-GG-------------------GGT----T-------
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcc-cc-------------------cHH----H-------
Confidence 5899999976 5888888999999 56899998752110000 00 000 0
Q ss_pred cCCccccccccccceeCHHHHHH-HHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~-~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
.... ....+.. .+.+.+.+.|++++.+++++.++.++. +|.+. +.+++++.||.|+|...
T Consensus 53 ~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~-~~~~~~d~lviAtG~~p 113 (384)
T 2v3a_A 53 SKNK------------DADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQ--RIWIG-EEEVRYRDLVLAWGAEP 113 (384)
T ss_dssp TTTC------------CHHHHEEECHHHHHHHTTCEEECSCCCCEEEGGGT--EEEET-TEEEECSEEEECCCEEE
T ss_pred hCCC------------CHHHhhccCHHHHHHhCCcEEEeCCEEEEEECCCC--EEEEC-CcEEECCEEEEeCCCCc
Confidence 0000 0111110 112233456889999998888865444 44554 45799999999999754
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00047 Score=74.91 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=79.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||||| .|+-+|..|++.|.+|.++|+.+..- . .
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l---------------------~---------------------~ 252 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK---------------------L---------------------I 252 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT---------------------T---------------------C
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc---------------------c---------------------c
Confidence 469999977 59999999999999999999865210 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE----EEEEEcCCc-EEEcCEEEEccCCChHH-
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK-ILSSHLIIDAMGNFSPV- 263 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg----v~V~~~dG~-~i~ArlVI~ADG~~S~v- 263 (549)
.+ ..+.+.|.+.+++.|++++.+++|+++..++++ +.|.+++|+ ++.|+.||-|.|..+..
T Consensus 253 ------------~~-~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~ 319 (523)
T 1mo9_A 253 ------------KD-NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA 319 (523)
T ss_dssp ------------CS-HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred ------------cc-HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence 00 123345666777889999999999999876665 778887887 89999999999987653
Q ss_pred --HHHhcCC
Q 008915 264 --VKQIRSG 270 (549)
Q Consensus 264 --rrql~~~ 270 (549)
.+.+++.
T Consensus 320 ~~l~~~gl~ 328 (523)
T 1mo9_A 320 ELAKILGLD 328 (523)
T ss_dssp HHHHHHTCC
T ss_pred cCHHHcCCc
Confidence 4555543
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00033 Score=73.61 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=78.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||||| .|+-+|..|++.|.+|.++|+.+.+- +. .
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l--------~~------------------~--------------- 182 (410)
T 3ef6_A 144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL--------VR------------------V--------------- 182 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------HH------------------H---------------
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc--------hh------------------h---------------
Confidence 359999976 59999999999999999999865211 00 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH--HHHHh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQI 267 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~--vrrql 267 (549)
++ ..+.+.+.+.+++.|++++.+++++++..++....|.+++|+++.||+||-|.|..+. +.+.+
T Consensus 183 ------------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~ 249 (410)
T 3ef6_A 183 ------------LG-RRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQA 249 (410)
T ss_dssp ------------HC-HHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHT
T ss_pred ------------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhC
Confidence 00 1234455666677899999999999997655444688889999999999999998653 55666
Q ss_pred cCC
Q 008915 268 RSG 270 (549)
Q Consensus 268 ~~~ 270 (549)
++.
T Consensus 250 gl~ 252 (410)
T 3ef6_A 250 GLA 252 (410)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00081 Score=71.16 Aligned_cols=105 Identities=15% Similarity=0.228 Sum_probs=76.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+.+-. .
T Consensus 151 ~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~------------ 187 (431)
T 1q1r_A 151 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-------------------------------R------------ 187 (431)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-------------------------------T------------
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-------------------------------c------------
Confidence 59999976 599999999999999999998642110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE--ECCEE-EEEEcCCcEEEcCEEEEccCCCh--HHHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT--YENAA-VLLLAEGKILSSHLIIDAMGNFS--PVVK 265 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~--~~dgv-~V~~~dG~~i~ArlVI~ADG~~S--~vrr 265 (549)
. ++ ..+.+.+.+.+++.|++++.+++++++.. +++.+ .|.+++|+++.++.||.|.|... .+.+
T Consensus 188 ~----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~ 256 (431)
T 1q1r_A 188 V----------TA-PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS 256 (431)
T ss_dssp T----------SC-HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHH
T ss_pred h----------hh-HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhh
Confidence 0 00 12334455666778999999999999986 44454 57788888999999999999653 4566
Q ss_pred HhcCC
Q 008915 266 QIRSG 270 (549)
Q Consensus 266 ql~~~ 270 (549)
.++..
T Consensus 257 ~~gl~ 261 (431)
T 1q1r_A 257 AAGLQ 261 (431)
T ss_dssp HTTCC
T ss_pred ccCCC
Confidence 65543
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00051 Score=73.70 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=73.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+..-. .
T Consensus 187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------ 223 (479)
T 2hqm_A 187 KVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR-------------------------------K------------ 223 (479)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------------------T------------
T ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc-------------------------------c------------
Confidence 59999976 599999999999999999998652110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE--EEEEEcCC-cEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEG-KILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~dG-~~i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+++.|++++.+++++++..++++ +.|.+++| +++.+|.||.|.|.....
T Consensus 224 -----------~d-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 224 -----------FD-ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp -----------SC-HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred -----------cC-HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 00 112334555666779999999999999876555 77888888 789999999999976553
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00067 Score=73.12 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=75.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++|+.+..- ..
T Consensus 184 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l---------------------~~---------------------- 220 (499)
T 1xdi_A 184 HLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL---------------------PY---------------------- 220 (499)
T ss_dssp SEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS---------------------CC----------------------
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------------------cc----------------------
Confidence 58999976 59999999999999999999764210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+++.|++++.+++|+++..+++++.|.+.+|+++.||.||-|.|..+..
T Consensus 221 -----------~d-~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 281 (499)
T 1xdi_A 221 -----------ED-ADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT 281 (499)
T ss_dssp -----------SS-HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 00 12334556677788999999999999988777788888788899999999999987654
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0011 Score=69.59 Aligned_cols=102 Identities=19% Similarity=0.331 Sum_probs=75.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||||| .|+-+|..|++.|.+|.++|+.+.+-.. .
T Consensus 146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------~------------------------ 184 (408)
T 2gqw_A 146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-----------------A------------------------ 184 (408)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------T------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc-----------------c------------------------
Confidence 469999976 5999999999999999999987521100 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh--HHHHHh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQI 267 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S--~vrrql 267 (549)
++ ..+.+.+.+.+++.|++++.+++++++. ++ .|.+++|+++.+|.||-|.|... .+.+.+
T Consensus 185 ------------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~ 247 (408)
T 2gqw_A 185 ------------AP-ATLADFVARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIGVLANDALARAA 247 (408)
T ss_dssp ------------SC-HHHHHHHHHHHHHTTCEEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSCEEECCHHHHHH
T ss_pred ------------cC-HHHHHHHHHHHHHcCcEEEeCCEEEEEE--CC--EEEECCCCEEEcCEEEECcCCCccHHHHHhC
Confidence 00 1233455666777899999999999997 44 56777888999999999999764 455666
Q ss_pred cCC
Q 008915 268 RSG 270 (549)
Q Consensus 268 ~~~ 270 (549)
+..
T Consensus 248 gl~ 250 (408)
T 2gqw_A 248 GLA 250 (408)
T ss_dssp TCC
T ss_pred CCC
Confidence 543
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00068 Score=72.33 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=72.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+..-. .
T Consensus 176 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------~---------------------- 212 (468)
T 2qae_A 176 TMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP---------------------T---------------------- 212 (468)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------------------T----------------------
T ss_pred eEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc---------------------c----------------------
Confidence 58999976 599999999999999999998642110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHH-HhcCCEEEeCceEEEEEEECCEEEEEEc--CC--cEEEcCEEEEccCCChH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a-~~~G~~v~~~t~v~~i~~~~dgv~V~~~--dG--~~i~ArlVI~ADG~~S~ 262 (549)
++ ..+.+.+.+.+ ++.|++++.+++++++..+++++.|.++ +| +++.+|.||-|.|..+.
T Consensus 213 -----------~d-~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~ 277 (468)
T 2qae_A 213 -----------LD-EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPF 277 (468)
T ss_dssp -----------SC-HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEEC
T ss_pred -----------CC-HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccC
Confidence 00 12334566667 7789999999999999887777777775 56 58999999999998764
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0014 Score=72.21 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=29.7
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
..+|||+||||| +|+++|..|+++|++|+|||+.
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~ 139 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV 139 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence 347999999965 5888999999999999999984
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00096 Score=71.29 Aligned_cols=104 Identities=11% Similarity=0.172 Sum_probs=76.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+..-.. .
T Consensus 180 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------~------------ 217 (474)
T 1zmd_A 180 KMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV------------------------------G------------ 217 (474)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS------------------------------S------------
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc------------------------------c------------
Confidence 59999976 5999999999999999999986521100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEE-----cCCcEEEcCEEEEccCCChHH-
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLL-----AEGKILSSHLIIDAMGNFSPV- 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~-----~dG~~i~ArlVI~ADG~~S~v- 263 (549)
++ ..+.+.+.+.+++.|++++.+++++++..++++ +.+++ .+++++.++.||.|.|.....
T Consensus 218 -----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 285 (474)
T 1zmd_A 218 -----------ID-MEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTK 285 (474)
T ss_dssp -----------CC-HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCT
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCC
Confidence 00 123345566677789999999999999877766 77764 346689999999999977543
Q ss_pred ---HHHhcC
Q 008915 264 ---VKQIRS 269 (549)
Q Consensus 264 ---rrql~~ 269 (549)
.+.+++
T Consensus 286 ~l~l~~~g~ 294 (474)
T 1zmd_A 286 NLGLEELGI 294 (474)
T ss_dssp TSSHHHHTC
T ss_pred cCCchhcCC
Confidence 445544
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0006 Score=72.69 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
+||||||||| +|+++|..|++.|++|+|||+....
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~G 40 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALG 40 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccCCCC
Confidence 6999999976 5888888999999999999995443
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00017 Score=78.88 Aligned_cols=109 Identities=12% Similarity=0.048 Sum_probs=68.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.||+||||| +|+++|..|+++ |++|+|||+.+.....+. . +.. .+...+..
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~-~-----l~~--------------~~~~~~~~------ 55 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANC-G-----LPY--------------HISGEIAQ------ 55 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG-G-----HHH--------------HHTSSSCC------
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccccc-C-----chH--------------HhcCCcCC------
Confidence 489999976 698999999988 899999999876442211 0 000 00000000
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE-cCCc--EEEcCEEEEccCCC
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~dG~--~i~ArlVI~ADG~~ 260 (549)
...+. .+. .+.+ +...|++++.+++|++++.+...+.+.. .+|. ++++|.||-|+|..
T Consensus 56 -~~~~~--------~~~---~~~~---~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~ 116 (565)
T 3ntd_A 56 -RSALV--------LQT---PESF---KARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAA 116 (565)
T ss_dssp -GGGGB--------CCC---HHHH---HHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred -hHHhh--------ccC---HHHH---HHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCC
Confidence 00000 000 0111 2235889999999999988777777664 2343 79999999999973
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0013 Score=70.89 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=74.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+.+-. .
T Consensus 178 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------ 214 (500)
T 1onf_A 178 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-------------------------------K------------ 214 (500)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-------------------------------T------------
T ss_pred eEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-------------------------------c------------
Confidence 58999976 599999999999999999998652110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEEEcCCcE-EEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~dG~~-i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+++.|++++.+++++++..++++ +.|.+++|++ +.+|.||-|.|.....
T Consensus 215 -----------~d-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~ 277 (500)
T 1onf_A 215 -----------FD-ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT 277 (500)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred -----------cc-hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence 00 112344566677789999999999999876544 7788888887 9999999999987654
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00084 Score=72.02 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=75.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- ..
T Consensus 187 ~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l---------------------~~---------------------- 223 (482)
T 1ojt_A 187 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM---------------------QG---------------------- 223 (482)
T ss_dssp EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS---------------------TT----------------------
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc---------------------cc----------------------
Confidence 59999976 59999999999999999999865211 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC----CcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE----GKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d----G~~i~ArlVI~ADG~~S~v 263 (549)
.+ ..+.+.+.+.+++.|++++.+++++++..+++++.|.+++ |+++.+|.||.|.|.....
T Consensus 224 -----------~~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~ 288 (482)
T 1ojt_A 224 -----------AD-RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG 288 (482)
T ss_dssp -----------SC-HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred -----------cC-HHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence 00 1233445666777899999999999998887788888776 7789999999999987654
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.001 Score=71.68 Aligned_cols=97 Identities=12% Similarity=0.167 Sum_probs=74.6
Q ss_pred cEEEEcch-HHHHHHHHHHhC---CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 112 DVIVCGGT-LGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~---GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.|+||||| .|+-+|..|++. |.+|.++|+.+..- ..
T Consensus 189 ~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l---------------------~~------------------- 228 (490)
T 1fec_A 189 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL---------------------RG------------------- 228 (490)
T ss_dssp EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS---------------------TT-------------------
T ss_pred eEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc---------------------cc-------------------
Confidence 69999976 599999999998 99999999865210 00
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+++.|++++.+++|+++..+++ .+.|.+++|+++.++.||.|.|.....
T Consensus 229 --------------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 290 (490)
T 1fec_A 229 --------------FD-SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS 290 (490)
T ss_dssp --------------SC-HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred --------------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence 00 12334566667778999999999999987665 477888888899999999999987653
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=78.60 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=30.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHh-CCCcEEEEccCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr-~GlrVlLIEr~~~ 143 (549)
++||+|||||| +|+.+|..|++ .|++|+|||++..
T Consensus 16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE 52 (526)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence 47999999976 58899999998 6899999999865
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00018 Score=77.74 Aligned_cols=31 Identities=32% Similarity=0.434 Sum_probs=27.8
Q ss_pred cccEEEEcch-HHHHHHHHHHh-CCCcEEEEcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSF-KGLRVAIVER 140 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr-~GlrVlLIEr 140 (549)
+||||||||| +|+++|..|++ .|++|+|||+
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~ 39 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV 39 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred ccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence 6999999976 58888889999 9999999994
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00029 Score=75.98 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=35.0
Q ss_pred hcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 217 SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 217 ~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
+.|++++.+++|++++.+.. +|++++|+++.++.||.|+|...
T Consensus 102 ~~gv~~~~g~~v~~id~~~~--~V~~~~g~~i~yd~lviATGs~p 144 (493)
T 1m6i_A 102 NGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTP 144 (493)
T ss_dssp TCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEE
T ss_pred cCCeEEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECCCCCC
Confidence 45789999999999876544 56677888999999999999653
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00017 Score=77.64 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEE-ECCE-EEEEEcCCcEEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICT-YENA-AVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dg-v~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.|-+.|.+.+++.|++++.+++|+++.. +++. +.|.+.+|++++|+.||.|.|..
T Consensus 257 ~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 257 GIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp HHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 4667788888889999999999999988 4444 34777788899999999999977
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0017 Score=69.81 Aligned_cols=96 Identities=18% Similarity=0.253 Sum_probs=73.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+.... .
T Consensus 200 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------ 236 (491)
T 3urh_A 200 SMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG-------------------------------G------------ 236 (491)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS-------------------------------S------------
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc-------------------------------c------------
Confidence 58999976 599999999999999999987642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---C--cEEEcCEEEEccCCChH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d---G--~~i~ArlVI~ADG~~S~ 262 (549)
++ ..+.+.+.+.+++.|++++.+++++++..+++++.|.+.+ | +++.+|.||.|.|....
T Consensus 237 -----------~d-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 301 (491)
T 3urh_A 237 -----------MD-GEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPS 301 (491)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEEC
T ss_pred -----------CC-HHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccC
Confidence 00 1233455666777899999999999999988888887753 5 58999999999998654
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0016 Score=71.13 Aligned_cols=104 Identities=18% Similarity=0.296 Sum_probs=78.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+..-..
T Consensus 153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------- 189 (565)
T 3ntd_A 153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP------------------------------------------- 189 (565)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-------------------------------------------
T ss_pred EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-------------------------------------------
Confidence 69999976 5999999999999999999986421100
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-------------------CCEEEEEEcCCcEEEcC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-------------------ENAAVLLLAEGKILSSH 251 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-------------------~dgv~V~~~dG~~i~Ar 251 (549)
.+ ..+.+.+.+.+++.|++++.+++++++..+ ++++.+.+.+|+++.||
T Consensus 190 -----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D 257 (565)
T 3ntd_A 190 -----------VD-REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETD 257 (565)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEES
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcC
Confidence 00 122344556677789999999999999873 56778888888899999
Q ss_pred EEEEccCCCh--HHHHHhcCC
Q 008915 252 LIIDAMGNFS--PVVKQIRSG 270 (549)
Q Consensus 252 lVI~ADG~~S--~vrrql~~~ 270 (549)
.||-|.|... .+.+.+++.
T Consensus 258 ~vi~a~G~~p~~~l~~~~g~~ 278 (565)
T 3ntd_A 258 LLIMAIGVRPETQLARDAGLA 278 (565)
T ss_dssp EEEECSCEEECCHHHHHHTCC
T ss_pred EEEECcCCccchHHHHhCCcc
Confidence 9999999854 355555543
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0016 Score=69.14 Aligned_cols=95 Identities=19% Similarity=0.071 Sum_probs=73.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++|+.+..-..
T Consensus 149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------- 185 (452)
T 3oc4_A 149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK------------------------------------------- 185 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-------------------------------------------
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc-------------------------------------------
Confidence 59999976 5999999999999999999986521000
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. ++ ..+.+.+.+.+++.|++++.+++++++...++++.|.++++ ++.||.||-|.|...
T Consensus 186 ~----------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p 244 (452)
T 3oc4_A 186 Y----------FD-KEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHP 244 (452)
T ss_dssp T----------CC-HHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBC
T ss_pred c----------CC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCC
Confidence 0 00 12345566677788999999999999987777887887666 899999999999764
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00064 Score=79.44 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=31.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+||||||||| +|+++|..|+++|++|+|||+.+.++
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~G 164 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAG 164 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 5899999965 68889999999999999999986543
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0026 Score=67.41 Aligned_cols=97 Identities=16% Similarity=0.247 Sum_probs=72.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+..-.. .
T Consensus 151 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------~------------------------- 188 (452)
T 2cdu_A 151 TITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK-----------------Y------------------------- 188 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT-----------------T-------------------------
T ss_pred eEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh-----------------h-------------------------
Confidence 59999976 5999999999999999999986421100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
++ ..+.+.+.+.+++.|++++.+++++++..+++.+.....+|+++.+|.||.|.|....
T Consensus 189 -----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~ 248 (452)
T 2cdu_A 189 -----------FD-KEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPN 248 (452)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred -----------hh-hhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCC
Confidence 00 1233455667778899999999999998766666522337889999999999997654
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0018 Score=68.96 Aligned_cols=95 Identities=22% Similarity=0.233 Sum_probs=73.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+..- . +
T Consensus 178 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------------~-----------~----------- 214 (467)
T 1zk7_A 178 RLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF---------------------R-----------E----------- 214 (467)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT---------------------T-----------S-----------
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC---------------------C-----------C-----------
Confidence 58999976 59999999999999999999764200 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
+ ..+.+.+.+.+++.|++++.+++|+++..+++.+.|.++ +.++.++.||-|.|..+..
T Consensus 215 ------------~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~ 273 (467)
T 1zk7_A 215 ------------D-PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNT 273 (467)
T ss_dssp ------------C-HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred ------------C-HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence 0 123345666677789999999999999887777777775 5689999999999987653
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00073 Score=72.04 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=72.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||||| .|+-+|..|++.|.+|.++|+.+.....
T Consensus 178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 215 (470)
T 1dxl_A 178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------------------------------ 215 (470)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------------------------------
Confidence 358999976 5999999999999999999987521100
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc---CC--cEEEcCEEEEccCCChH
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---dG--~~i~ArlVI~ADG~~S~ 262 (549)
.+ ..+.+.+.+.+++.|++++.+++++++..+++++.|+++ +| +++.+|.||.|.|....
T Consensus 216 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 280 (470)
T 1dxl_A 216 ------------MD-AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPF 280 (470)
T ss_dssp ------------SC-HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred ------------cc-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcC
Confidence 00 123344566677789999999999999876666777764 44 58999999999998764
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0021 Score=68.83 Aligned_cols=95 Identities=20% Similarity=0.267 Sum_probs=70.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-+|+||||| .|+-+|..|++.|.+|.++|+.+.... . +
T Consensus 187 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------~--------------------~--- 225 (480)
T 3cgb_A 187 EDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT------------------I--------------------Y--- 225 (480)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS------------------S--------------------S---
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh------------------c--------------------C---
Confidence 579999987 599999999999999999998642110 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcCCcEEEcCEEEEccCCChH
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
+ ..+.+.+.+.+++.|++++.+++++++..+ +.+ .+.+ ++.++.+|.||.|.|..+.
T Consensus 226 -------------~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~D~vi~a~G~~p~ 283 (480)
T 3cgb_A 226 -------------D-GDMAEYIYKEADKHHIEILTNENVKAFKGN-ERVEAVET-DKGTYKADLVLVSVGVKPN 283 (480)
T ss_dssp -------------C-HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SBEEEEEE-TTEEEECSEEEECSCEEES
T ss_pred -------------C-HHHHHHHHHHHHHcCcEEEcCCEEEEEEcC-CcEEEEEE-CCCEEEcCEEEECcCCCcC
Confidence 0 123445666777889999999999999764 444 3555 4558999999999997653
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0022 Score=68.35 Aligned_cols=96 Identities=23% Similarity=0.321 Sum_probs=72.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- . .
T Consensus 173 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------------~----------~------------ 209 (464)
T 2a8x_A 173 SIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL---------------------P----------N------------ 209 (464)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------------------T----------T------------
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc---------------------c----------c------------
Confidence 59999976 59999999999999999999865210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc-CC--cEEEcCEEEEccCCChH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EG--KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-dG--~~i~ArlVI~ADG~~S~ 262 (549)
++ ..+.+.+.+.+++.|++++.+++++++..+++++.+.++ +| +++.+|.||-|.|....
T Consensus 210 -----------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 272 (464)
T 2a8x_A 210 -----------ED-ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN 272 (464)
T ss_dssp -----------SC-HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred -----------cC-HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence 00 112344556666779999999999999877667777775 56 58999999999997654
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0023 Score=63.83 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=67.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+.... .
T Consensus 147 ~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------~- 183 (320)
T 1trb_A 147 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------E- 183 (320)
T ss_dssp EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC------------------------------------------C-
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc------------------------------------------C-
Confidence 69999976 599999999999999999997642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcC----C--cEEEcCEEEEccCCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAE----G--KILSSHLIIDAMGNF 260 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~d----G--~~i~ArlVI~ADG~~ 260 (549)
..+.+.+.+.+.+.|++++.+++++++..+++.+. |.+.+ | .++.+|.||-|.|..
T Consensus 184 --------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~ 246 (320)
T 1trb_A 184 --------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 246 (320)
T ss_dssp --------------HHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEE
T ss_pred --------------HHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCC
Confidence 11233455666778999999999999987664432 55543 4 479999999999854
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0023 Score=68.99 Aligned_cols=97 Identities=21% Similarity=0.299 Sum_probs=73.8
Q ss_pred cEEEEcch-HHHHHHHHHHhC---CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 112 DVIVCGGT-LGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~---GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.|+||||| .|+-+|..|++. |.+|.++|+.+..-. .
T Consensus 193 ~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-------------------------------~--------- 232 (495)
T 2wpf_A 193 RVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-------------------------------G--------- 232 (495)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-------------------------------T---------
T ss_pred eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-------------------------------c---------
Confidence 59999976 599999999988 999999997642110 0
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
++ ..+.+.+.+.+++.|++++.+++|+++..+++ .+.|.+++|+++.+|.||.|.|.....
T Consensus 233 --------------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 294 (495)
T 2wpf_A 233 --------------FD-ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT 294 (495)
T ss_dssp --------------SC-HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred --------------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence 00 11234556667778999999999999987654 377888888899999999999977543
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=70.73 Aligned_cols=94 Identities=21% Similarity=0.257 Sum_probs=69.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..... +
T Consensus 173 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~------------------------ 210 (458)
T 1lvl_A 173 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT------------------Y------------------------ 210 (458)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------S------------------------
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------c------------------------
Confidence 69999976 5999999999999999999987521100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCChH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~S~ 262 (549)
+ ..+.+.+.+.+.+.|++++.+++++++.. +.+.++.++| +++.++.||.|.|....
T Consensus 211 ------------~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~v~v~~~~G~~~~i~~D~vv~a~G~~p~ 269 (458)
T 1lvl_A 211 ------------D-SELTAPVAESLKKLGIALHLGHSVEGYEN--GCLLANDGKGGQLRLEADRVLVAVGRRPR 269 (458)
T ss_dssp ------------C-HHHHHHHHHHHHHHTCEEETTCEEEEEET--TEEEEECSSSCCCEECCSCEEECCCEEEC
T ss_pred ------------C-HHHHHHHHHHHHHCCCEEEECCEEEEEEe--CCEEEEECCCceEEEECCEEEECcCCCcC
Confidence 0 11233455566677999999999999875 3465654356 58999999999997654
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0026 Score=68.48 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=77.6
Q ss_pred cEEEEcch-HHHHHHHHHHh----CCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 112 DVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr----~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.|+||||| .|+-+|..|++ .|.+|.++++.+.+- .
T Consensus 182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~---------------------~------------------- 221 (493)
T 1m6i_A 182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM---------------------G------------------- 221 (493)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT---------------------T-------------------
T ss_pred eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc---------------------c-------------------
Confidence 59999977 59989988876 488899998653100 0
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH--HH
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VV 264 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~--vr 264 (549)
. . ++ ..+.+.+.+.+++.|++++.+++|+++..+++.+.|.+++|+++.|++||-|.|.... +.
T Consensus 222 ---~------~----l~-~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~ 287 (493)
T 1m6i_A 222 ---K------I----LP-EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELA 287 (493)
T ss_dssp ---T------T----SC-HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTH
T ss_pred ---c------c----CC-HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHH
Confidence 0 0 00 1234556667788899999999999998877778888888999999999999997643 55
Q ss_pred HHhcCC
Q 008915 265 KQIRSG 270 (549)
Q Consensus 265 rql~~~ 270 (549)
+.+++.
T Consensus 288 ~~~gl~ 293 (493)
T 1m6i_A 288 KTGGLE 293 (493)
T ss_dssp HHHTCC
T ss_pred HHcCCc
Confidence 666543
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0029 Score=68.03 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=72.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+.... .+
T Consensus 176 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------~~------------------------ 213 (492)
T 3ic9_A 176 SVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN------------------LQ------------------------ 213 (492)
T ss_dssp EEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT------------------CC------------------------
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc------------------cC------------------------
Confidence 59999976 599999999999999999998653110 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc--CC--cEEEcCEEEEccCCChH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--dG--~~i~ArlVI~ADG~~S~ 262 (549)
+ ..+.+.+.+.+++. ++++.+++++++..+++++.+++. +| +++.+|.||-|.|....
T Consensus 214 ------------d-~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~ 275 (492)
T 3ic9_A 214 ------------D-EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN 275 (492)
T ss_dssp ------------C-HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred ------------C-HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence 0 02334455555566 999999999999988888888875 67 58999999999998654
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00039 Score=73.11 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=31.6
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
.++||+||||| .|+++|..|+++|++|+|+|+....
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 64 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI 64 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence 37999999976 5889999999999999999998654
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00032 Score=73.57 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=31.0
Q ss_pred cccEEEEcchH-HHHHHHHHHhC-CCcEEEEccCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFK-GLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~-GlrVlLIEr~~~~ 144 (549)
++||+|||||+ |+++|..|+++ |++|+|+|++..+
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~ 43 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 69999999875 88899999998 9999999998644
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00032 Score=76.53 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=31.3
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.+||+|||||| +|+++|..|++.|++|+|||+...
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 41 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 36999999976 599999999999999999999864
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00042 Score=74.12 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC---cEEEcCEEEEccCCC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNF 260 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG---~~i~ArlVI~ADG~~ 260 (549)
|-+.|.+.+.+ ++|+.+++|++|..++++++|++.+| ++++||.||.|....
T Consensus 241 l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~ 295 (489)
T 2jae_A 241 IYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH 295 (489)
T ss_dssp HHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHH
T ss_pred HHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHH
Confidence 44555555422 68999999999999999999988776 589999999998653
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00042 Score=72.57 Aligned_cols=42 Identities=7% Similarity=-0.008 Sum_probs=35.9
Q ss_pred cCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 218 ~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.+.+++.+++|++|..++++++|++.+|+ ++||.||-|.+..
T Consensus 216 l~~~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~ 257 (424)
T 2b9w_A 216 LEHPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLE 257 (424)
T ss_dssp SSSCCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHH
T ss_pred hcceEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHH
Confidence 35678999999999988888988887775 9999999999865
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.004 Score=68.05 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=76.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.++||||| +|+=.|..+++.|.+|+|+++..... .
T Consensus 225 ~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~----------------------~---------------------- 260 (542)
T 4b1b_A 225 KTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR----------------------G---------------------- 260 (542)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST----------------------T----------------------
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc----------------------c----------------------
Confidence 49999987 59999999999999999998643110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~v 263 (549)
.| ..+-+.+.+.+++.|++++.++.++.+...++.+.|.+.++.++.++.|+.|.|+.-.+
T Consensus 261 -----------~D-~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt 321 (542)
T 4b1b_A 261 -----------FD-QQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDI 321 (542)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESC
T ss_pred -----------cc-hhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCc
Confidence 00 11234456667788999999999999999999999999888889999999999976544
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00035 Score=72.40 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=30.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
+|||+||||| .|+++|..|+++|++|+|+|+...+
T Consensus 1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 36 (367)
T 1i8t_A 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36 (367)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3899999977 5889999999999999999998644
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00046 Score=73.12 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
.+-+.|.+.+++.|++++.+++|+++..++++++....+|++++||.||.|.|..+.
T Consensus 235 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 235 ELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp HHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence 566778888888899999999999999888887643457889999999999999874
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00036 Score=75.18 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=31.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+|||+||||| +|+++|..|+++|++|+||||.+..+
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~~GG 44 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGAYGT 44 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSCSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 5999999976 58888889999999999999987555
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0031 Score=67.30 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=73.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++++.+..- . .
T Consensus 182 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------------------~----------~------------ 218 (476)
T 3lad_A 182 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL---------------------P----------A------------ 218 (476)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS---------------------T----------T------------
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC---------------------c----------c------------
Confidence 59999976 59999999999999999999864210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC---cEEEcCEEEEccCCChH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSP 262 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG---~~i~ArlVI~ADG~~S~ 262 (549)
.+ ..+.+.+.+.+++.|++++.+++++++..+++++.+.+.++ +++.+|.||.|.|....
T Consensus 219 -----------~~-~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~ 281 (476)
T 3lad_A 219 -----------VD-EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPV 281 (476)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEEC
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCccc
Confidence 00 12344556667778999999999999998888888887754 57999999999997643
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.003 Score=67.87 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=70.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||||| .|+-+|..|++.|.+|.++|+.+..-.. .
T Consensus 195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------~------------------------ 233 (490)
T 2bc0_A 195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG-----------------Y------------------------ 233 (490)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------T------------------------
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh-----------------H------------------------
Confidence 359999977 5999999999999999999986521100 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcCCcEEEcCEEEEccCCChH
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
++ ..+.+.+.+.+++.|++++.+++++++.. ++.+ .|.+ +|+++.+|.||.|.|....
T Consensus 234 ------------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~ 292 (490)
T 2bc0_A 234 ------------YD-RDLTDLMAKNMEEHGIQLAFGETVKEVAG-NGKVEKIIT-DKNEYDVDMVILAVGFRPN 292 (490)
T ss_dssp ------------SC-HHHHHHHHHHHHTTTCEEEETCCEEEEEC-SSSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred ------------HH-HHHHHHHHHHHHhCCeEEEeCCEEEEEEc-CCcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence 00 12344566677788999999999999975 3433 3555 6788999999999997643
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0005 Score=73.76 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=42.5
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCCCC-c-------------cc--cCCHHHHHHHHHcCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGRE-Q-------------EW--NISRKELLELVESGIL 166 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~~~-r-------------~~--~IS~~~l~~L~~lGl~ 166 (549)
.+||+|||||+ |+++|+.|+++|++|+|+|++..++.. . .| .-.+...+.+.++|+.
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~ 86 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLR 86 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCG
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCc
Confidence 58999999875 889999999999999999998765421 0 01 1124566778888874
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0024 Score=65.99 Aligned_cols=97 Identities=21% Similarity=0.315 Sum_probs=71.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+.+.. ++
T Consensus 145 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~----------------------- 182 (367)
T 1xhc_A 145 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-------------------LD----------------------- 182 (367)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-------------------CC-----------------------
T ss_pred cEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-------------------CC-----------------------
Confidence 58999976 599999999999999999998652110 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH--HHHHhc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQIR 268 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~--vrrql~ 268 (549)
..+.+.+.+.+++.|++++.+++++++. .++ |.+++|+ +.++.||.|.|.... +.+.++
T Consensus 183 --------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~~~--v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~g 243 (367)
T 1xhc_A 183 --------------EELSNMIKDMLEETGVKFFLNSELLEAN--EEG--VLTNSGF-IEGKVKICAIGIVPNVDLARRSG 243 (367)
T ss_dssp --------------HHHHHHHHHHHHHTTEEEECSCCEEEEC--SSE--EEETTEE-EECSCEEEECCEEECCHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHCCCEEEcCCEEEEEE--eeE--EEECCCE-EEcCEEEECcCCCcCHHHHHhCC
Confidence 1233445666777899999999999986 343 5566787 999999999996643 455554
Q ss_pred C
Q 008915 269 S 269 (549)
Q Consensus 269 ~ 269 (549)
.
T Consensus 244 l 244 (367)
T 1xhc_A 244 I 244 (367)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00052 Score=74.22 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=35.7
Q ss_pred CEEEeCceEEEEEEE-CCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 220 GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 220 ~~v~~~t~v~~i~~~-~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
++|+.+++|++|..+ ++++.|++.+|++++||.||.|.+..
T Consensus 215 ~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~ 256 (516)
T 1rsg_A 215 NWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQS 256 (516)
T ss_dssp GGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHH
T ss_pred CEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHH
Confidence 479999999999986 66799999889899999999998743
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0037 Score=66.57 Aligned_cols=96 Identities=13% Similarity=0.213 Sum_probs=73.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+|+||| .|+-+|..|++.|.+|.++++.+..- . .
T Consensus 171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l---------------------~----------~----------- 208 (463)
T 4dna_A 171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL---------------------S----------R----------- 208 (463)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------------------T----------T-----------
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------------------c----------c-----------
Confidence 358999976 59999999999999999999865210 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EEEE-EcCCcEEEcCEEEEccCCChH
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLL-LAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~-~~dG~~i~ArlVI~ADG~~S~ 262 (549)
++ ..+.+.+.+.+++.|++++.+++++++..++++ +.|. +++|+ +.+|.||-|.|....
T Consensus 209 ------------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~ 269 (463)
T 4dna_A 209 ------------FD-QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPN 269 (463)
T ss_dssp ------------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred ------------cC-HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence 00 123455666777889999999999999887666 5777 77887 999999999998654
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0047 Score=62.84 Aligned_cols=102 Identities=19% Similarity=0.139 Sum_probs=70.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|.-+|..|++.|.+|.++++.+..... .+.+
T Consensus 168 ~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~------------------------------~~d~--------- 208 (369)
T 3d1c_A 168 QYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP------------------------------DADP--------- 208 (369)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECC----------------------------------------C---------
T ss_pred EEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC------------------------------CCCC---------
Confidence 69999976 5988999999999999999986421100 0000
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEE-cCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILS-SHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~-ArlVI~ADG~~S 261 (549)
.+. .+ ..+.+.+.+.+++.| ++++.+++++++..+++.+.|.+.+|+++. ++.||-|.|...
T Consensus 209 ~~~--------~~-~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~ 272 (369)
T 3d1c_A 209 SVR--------LS-PYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDA 272 (369)
T ss_dssp TTS--------CC-HHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCG
T ss_pred Ccc--------CC-HHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCC
Confidence 000 01 123455566667776 999999999999877788888888887664 588888998654
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0052 Score=65.74 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=69.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++++...... +
T Consensus 189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~------------------------ 225 (483)
T 3dgh_A 189 KTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRG-------------------F------------------------ 225 (483)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTT-------------------S------------------------
T ss_pred cEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcc-------------------c------------------------
Confidence 58999976 599999999999999999987421000 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCc-----EEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGK-----ILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~-----~i~ArlVI~ADG~~S 261 (549)
+ ..+.+.+.+.+++.|++++.+++++++..+++ .+.|++.++. ++.+|.||.|.|...
T Consensus 226 ------------d-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p 289 (483)
T 3dgh_A 226 ------------D-QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKG 289 (483)
T ss_dssp ------------C-HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred ------------C-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccccc
Confidence 0 12334456667778999999999999987655 3667765543 799999999999754
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00074 Score=70.42 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=30.8
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccC-CCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERN-TLK 144 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~-~~~ 144 (549)
.+||+|||||+ |+++|..|+++|++|+|+|+. ...
T Consensus 44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v 80 (376)
T 2e1m_A 44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV 80 (376)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence 58999999775 889999999999999999998 543
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00084 Score=70.20 Aligned_cols=33 Identities=27% Similarity=0.146 Sum_probs=29.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
+||+||||| +|+.+|..||++|++|+|+|+.+.
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~ 35 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK 35 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 799999976 599999999999999999998874
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00068 Score=75.42 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=32.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+||||||||| +|+++|..|+++|++|+||||....+
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g 82 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS 82 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence 6999999975 59999999999999999999987654
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00046 Score=75.33 Aligned_cols=35 Identities=34% Similarity=0.626 Sum_probs=31.0
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
.+||+|||||| +|+.+|..|++ |.+|+|||++...
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~ 60 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence 36999999976 69999999999 9999999999754
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00066 Score=74.80 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=31.2
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCC-CcEEEEccCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~G-lrVlLIEr~~~ 143 (549)
.+||+|||||| +|+++|..|++.| ++|+|||+...
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 36999999965 6999999999997 89999999876
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0036 Score=62.69 Aligned_cols=89 Identities=18% Similarity=0.034 Sum_probs=64.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+||||| .|+-+|..|++.|.+|.++++.+....
T Consensus 174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------------------------------------------- 210 (338)
T 3itj_A 174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------------------------------------------- 210 (338)
T ss_dssp SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------------------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------------------------------------------
Confidence 359999976 599999999999999999997642110
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE-EEEcC-----CcEEEcCEEEEccCCC
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAE-----GKILSSHLIIDAMGNF 260 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~d-----G~~i~ArlVI~ADG~~ 260 (549)
.+.+.+++.+. |++++.+++++++..+++++. |.+.+ +.++.+|+||-|.|..
T Consensus 211 ------------------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 270 (338)
T 3itj_A 211 ------------------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHT 270 (338)
T ss_dssp ------------------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEE
T ss_pred ------------------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCC
Confidence 01123344444 889999999999987766443 55543 3579999999999854
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0012 Score=69.87 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=62.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCC--CcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G--lrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
.||||||| +|+++|..|++.+ ++|+|||+.+.... .+. +.. ...|..+. .
T Consensus 4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~------~p~-l~~-v~~g~~~~-------------~------ 56 (430)
T 3hyw_A 4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGF------TPA-FPH-LAMGWRKF-------------E------ 56 (430)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEEC------GGG-HHH-HHHTCSCG-------------G------
T ss_pred cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCcc------Ccc-HHH-HhcCCCCH-------------H------
Confidence 49999976 5888888998765 89999998764211 000 000 01122111 0
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.+..+ + .+.+.+.|++++.+ +|++++.+.. +|++++|+++..|.||-|.|..
T Consensus 57 --~i~~~------~---------~~~~~~~gv~~i~~-~v~~Id~~~~--~V~~~~g~~i~YD~LViAtG~~ 108 (430)
T 3hyw_A 57 --DISVP------L---------APLLPKFNIEFINE-KAESIDPDAN--TVTTQSGKKIEYDYLVIATGPK 108 (430)
T ss_dssp --GSEEE------S---------TTTGGGGTEEEECS-CEEEEETTTT--EEEETTCCEEECSEEEECCCCE
T ss_pred --Hhhhc------H---------HHHHHHCCcEEEEe-EEEEEECCCC--EEEECCCCEEECCEEEEeCCCC
Confidence 01100 0 00122357787755 6888765443 5678889999999999999974
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.013 Score=61.93 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=76.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCC--Cccc---cCCHHHHHHHHHcCCCCcccchhhhhhccCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGR--EQEW---NISRKELLELVESGILVEDDIDEATATKFNPN 182 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~--~r~~---~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~ 182 (549)
-.|+||||| .|+=+|..|++. |.+|.+++|...... ...+ ..++.....+..+. . +....+.....
T Consensus 228 ~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~---~-~~~~~~~~~~~-- 301 (463)
T 3s5w_A 228 MKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSRE---H-AERERLLREYH-- 301 (463)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSC---H-HHHHHHHHHTG--
T ss_pred CeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCC---H-HHHHHHHHHhh--
Confidence 479999987 588899999988 999999999874321 1100 11222222222221 0 00000000000
Q ss_pred cccccCCccccccccccceeCHH----HHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEEEEEc---CCc--EEEcCE
Q 008915 183 RCGFEGKGEIWVEDILNLGVSPA----KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSHL 252 (549)
Q Consensus 183 ~i~f~~~~~l~~~~~l~~~V~~~----~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~---dG~--~i~Arl 252 (549)
...+ -+++.. ....+..+++.. .|++++.+++|+++..+++++.|++. +|+ ++.+|+
T Consensus 302 -------~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~ 368 (463)
T 3s5w_A 302 -------NTNY------SVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDA 368 (463)
T ss_dssp -------GGTS------SCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESE
T ss_pred -------ccCC------CcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCE
Confidence 0000 012222 222333334433 48899999999999998888888886 565 599999
Q ss_pred EEEccCCC
Q 008915 253 IIDAMGNF 260 (549)
Q Consensus 253 VI~ADG~~ 260 (549)
||-|.|..
T Consensus 369 Vv~AtG~~ 376 (463)
T 3s5w_A 369 VILATGYE 376 (463)
T ss_dssp EEECCCEE
T ss_pred EEEeeCCC
Confidence 99999954
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00075 Score=74.41 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=30.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhC-CCcEEEEccCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNT 142 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~-GlrVlLIEr~~ 142 (549)
.+||+|||||| +|+++|..|++. |++|+|||+.+
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 47999999975 699999999975 89999999987
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.013 Score=58.10 Aligned_cols=89 Identities=18% Similarity=0.067 Sum_probs=63.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+|+||| .|+-+|..|++.|.+|.++++.+... .+
T Consensus 144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------~~------------------------------------ 181 (311)
T 2q0l_A 144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR------CA------------------------------------ 181 (311)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC------SC------------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC------CC------------------------------------
Confidence 369999976 59999999999999999998764211 00
Q ss_pred ccccccccccceeCHHHHHHHHHHHHH-hcCCEEEeCceEEEEEEECCEE-EEEEc---CCc--EEEcCEEEEccCCC
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFI-SLGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~-~~G~~v~~~t~v~~i~~~~dgv-~V~~~---dG~--~i~ArlVI~ADG~~ 260 (549)
+ .+.+++. +.|++++.+++++++..+++++ .|.+. +|+ ++.+|.||-|.|..
T Consensus 182 --------------~-----~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 240 (311)
T 2q0l_A 182 --------------P-----ITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYD 240 (311)
T ss_dssp --------------H-----HHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred --------------H-----HHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCc
Confidence 0 0122333 3588999999999998775654 34544 565 79999999999843
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.004 Score=64.61 Aligned_cols=42 Identities=17% Similarity=0.034 Sum_probs=31.7
Q ss_pred hcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 217 SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 217 ~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
..|++++.+ +|++++.+. -+|.+.+|.++..|.||.|.|...
T Consensus 67 ~~gv~~i~~-~v~~id~~~--~~v~~~~g~~i~yd~LviAtG~~~ 108 (401)
T 3vrd_B 67 AHGIQVVHD-SALGIDPDK--KLVKTAGGAEFAYDRCVVAPGIDL 108 (401)
T ss_dssp HTTCEEECS-CEEEEETTT--TEEEETTSCEEECSEEEECCCEEE
T ss_pred HCCCEEEEe-EEEEEEccC--cEEEecccceeecceeeeccCCcc
Confidence 468888654 677775443 356677889999999999999753
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00086 Score=71.30 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=30.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
+|||+||||| +|+++|..|++.|++|+||||...
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~ 38 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKEL 38 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCCC
Confidence 6999999976 588889999999999999999854
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=96.69 E-value=0.012 Score=62.91 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=71.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++++.+..-. .
T Consensus 189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------~---------------------- 225 (478)
T 3dk9_A 189 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR---------------------S---------------------- 225 (478)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT---------------------T----------------------
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc---------------------c----------------------
Confidence 58999976 599999999999999999998642110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE--EEEEEcC---C----cEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAE---G----KILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~d---G----~~i~ArlVI~ADG~~S 261 (549)
.+ ..+.+.+.+.+++.|++++.+++++++..++++ +.|.+.+ | .++.+|.||-|.|...
T Consensus 226 -----------~d-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p 293 (478)
T 3dk9_A 226 -----------FD-SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVP 293 (478)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEE
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecccc
Confidence 00 112344556667789999999999999877666 5666654 2 5799999999999754
Q ss_pred H
Q 008915 262 P 262 (549)
Q Consensus 262 ~ 262 (549)
.
T Consensus 294 ~ 294 (478)
T 3dk9_A 294 N 294 (478)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0069 Score=66.47 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=74.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+.... .
T Consensus 189 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------~- 225 (588)
T 3ics_A 189 HATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP------------------------------------------P- 225 (588)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------------T-
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc------------------------------------------c-
Confidence 59999976 599999999999999999997642110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh--HHHHHhc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR 268 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S--~vrrql~ 268 (549)
.+ ..+.+.+.+.+++.|++++.+++++++..++++ |.+++|+++.+|.||-|.|... .+.+.++
T Consensus 226 -----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g 291 (588)
T 3ics_A 226 -----------ID-YEMAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLKSGSVIQTDMLILAIGVQPESSLAKGAG 291 (588)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEETTSCEEECSEEEECSCEEECCHHHHHTT
T ss_pred -----------CC-HHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEECCCCEEEcCEEEEccCCCCChHHHHhcC
Confidence 00 123345566677789999999999999765454 5667888999999999999754 3455554
Q ss_pred C
Q 008915 269 S 269 (549)
Q Consensus 269 ~ 269 (549)
+
T Consensus 292 ~ 292 (588)
T 3ics_A 292 L 292 (588)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=70.99 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=34.7
Q ss_pred EEEeCceEEEEEEECCEEEEEEcCCc----EEEcCEEEEccCCC
Q 008915 221 VIFEGYSVSSICTYENAAVLLLAEGK----ILSSHLIIDAMGNF 260 (549)
Q Consensus 221 ~v~~~t~v~~i~~~~dgv~V~~~dG~----~i~ArlVI~ADG~~ 260 (549)
+|+.+++|++|..+++++.|++.+|+ +++||.||.|.+..
T Consensus 254 ~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~ 297 (498)
T 2iid_A 254 KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR 297 (498)
T ss_dssp GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHH
T ss_pred ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChH
Confidence 79999999999998889999887654 58999999999853
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0054 Score=62.52 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=66.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++++.+.... ..
T Consensus 165 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~------------------------------------------~~ 202 (360)
T 3ab1_A 165 RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG------------------------------------------HG 202 (360)
T ss_dssp EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS------------------------------------------CS
T ss_pred cEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC------------------------------------------CH
Confidence 59999976 588899999999999999998652110 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEE--cCC--cEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLL--AEG--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~--~dG--~~i~ArlVI~ADG~~S 261 (549)
.+.+.|.+..++.|++++.+++++++..+++.+ .|.+ .+| .++.+|.||-|.|...
T Consensus 203 ---------------~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p 263 (360)
T 3ab1_A 203 ---------------KTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKS 263 (360)
T ss_dssp ---------------HHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCC
T ss_pred ---------------HHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCC
Confidence 001122334456789999999999998876643 3444 366 5799999999999553
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0014 Score=68.30 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=30.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
++||+||||| .|+++|..|+++|++|+|+|+....
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 38 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 4899999977 5999999999999999999998654
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0065 Score=64.33 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=65.8
Q ss_pred EEEEcch-HHHHHHHHHHhCC--CcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~G--lrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
||||||| +|+++|..|++.| .+|+||||.+.....++ .|+ .+. -+... .
T Consensus 3 VvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-~l~-----~~~-~~~~~---------------------~ 54 (437)
T 4eqs_A 3 IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC-ALP-----YVI-GEVVE---------------------D 54 (437)
T ss_dssp EEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG-GHH-----HHH-TTSSC---------------------C
T ss_pred EEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc-hhH-----HHH-cCCcc---------------------c
Confidence 8999975 6888999999888 57999999764332211 010 000 00000 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC---CcEEEcCEEEEccCCCh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GKILSSHLIIDAMGNFS 261 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d---G~~i~ArlVI~ADG~~S 261 (549)
.. . .....+..+ ..+.+++++.+++|+.++.+...+.+.... +.++++|.||-|+|...
T Consensus 55 ~~----~--~~~~~~~~~-------~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p 116 (437)
T 4eqs_A 55 RR----Y--ALAYTPEKF-------YDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASA 116 (437)
T ss_dssp GG----G--TBCCCHHHH-------HHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEE
T ss_pred hh----h--hhhcCHHHH-------HHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcc
Confidence 00 0 011122221 234588999999999998777666665432 33789999999999753
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.012 Score=62.16 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=73.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+..-.. .
T Consensus 150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------~------------------------- 187 (449)
T 3kd9_A 150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR-----------------S------------------------- 187 (449)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------T-------------------------
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh-----------------h-------------------------
Confidence 79999977 5999999999999999999986521100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC--hHHHHHhc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF--SPVVKQIR 268 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~--S~vrrql~ 268 (549)
++ ..+.+.+.+.+++. ++++.++.++++..++ .+.....+++++.+|.||-|.|.. ..+.+.++
T Consensus 188 -----------~~-~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~g 253 (449)
T 3kd9_A 188 -----------FD-KEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVILATGIKPNIELAKQLG 253 (449)
T ss_dssp -----------SC-HHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEECSCEEECCHHHHHTT
T ss_pred -----------cC-HHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCC
Confidence 00 12344556666667 9999999999986544 443334477889999999999975 34556665
Q ss_pred CC
Q 008915 269 SG 270 (549)
Q Consensus 269 ~~ 270 (549)
..
T Consensus 254 l~ 255 (449)
T 3kd9_A 254 VR 255 (449)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.017 Score=57.80 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=66.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|.-+|..|++.|.+|.++++.+.... .
T Consensus 154 ~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~------------------------------------------~- 190 (335)
T 2zbw_A 154 RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA------------------------------------------H- 190 (335)
T ss_dssp EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS------------------------------------------C-
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc------------------------------------------c-
Confidence 69999976 588899999999999999998642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc---CC--cEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---dG--~~i~ArlVI~ADG~~S 261 (549)
..+.+.|.+.+++.|++++.+++++++..++....|.+. +| +++.+|.||-|.|...
T Consensus 191 --------------~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p 252 (335)
T 2zbw_A 191 --------------EASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYIT 252 (335)
T ss_dssp --------------HHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred --------------HHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCC
Confidence 001123455566779999999999999874332245554 56 5799999999998553
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00096 Score=73.32 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=31.0
Q ss_pred cccEEEEcch-HHHHHHHHHHh-CCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr-~GlrVlLIEr~~~~ 144 (549)
+||+|||||| +|+++|..|++ .|++|+|||+.+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 5999999976 69999999998 69999999998653
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0021 Score=71.48 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEEC--CEEE-EEEcCCcEEEcCEEEEccC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAV-LLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dgv~-V~~~dG~~i~ArlVI~ADG 258 (549)
|-+.|.+.++..|++++.+++|..|..++ +.++ |...+|++++|+.||....
T Consensus 380 L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~ 434 (650)
T 1vg0_A 380 LPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDS 434 (650)
T ss_dssp HHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGG
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChh
Confidence 44566677788899999999999998887 4444 3446799999999997443
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.016 Score=62.11 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=69.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++++...... +
T Consensus 187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~---------------------------------------~---- 223 (488)
T 3dgz_A 187 KTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRG---------------------------------------F---- 223 (488)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT---------------------------------------S----
T ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEEcCccccc---------------------------------------C----
Confidence 59999976 599999999999999999987531100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcC---Cc--EEEcCEEEEccCCChH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE---GK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~d---G~--~i~ArlVI~ADG~~S~ 262 (549)
+ ..+.+.+.+.+++.|++++.++.++++...++ .+.|.+.+ |+ ++.+|.||-|.|....
T Consensus 224 ------------d-~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~ 288 (488)
T 3dgz_A 224 ------------D-QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE 288 (488)
T ss_dssp ------------C-HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEES
T ss_pred ------------C-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcc
Confidence 0 11334456667778999999999999987544 46666643 54 5899999999997543
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.002 Score=69.23 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCC-CcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~G-lrVlLIEr~~~~ 144 (549)
.+||+||||| .|+++|..|+++| .+|+|+|+.+.+
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~ 45 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 6899999977 5999999999998 799999998654
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.023 Score=56.04 Aligned_cols=89 Identities=18% Similarity=0.124 Sum_probs=63.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+.... .
T Consensus 149 ~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------~- 185 (315)
T 3r9u_A 149 EVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA------------------------------------------A- 185 (315)
T ss_dssp EEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS------------------------------------------C-
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC------------------------------------------C-
Confidence 59999976 599999999999999999987642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEc--CCc--EEEcCEEEEccCCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~--dG~--~i~ArlVI~ADG~~ 260 (549)
+.. +.+.+++.|++++.+++++++..+++.+. |.+. +|+ ++.+|.||-|.|..
T Consensus 186 -------------~~~----~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~ 243 (315)
T 3r9u_A 186 -------------PST----VEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLN 243 (315)
T ss_dssp -------------HHH----HHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEE
T ss_pred -------------HHH----HHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCC
Confidence 011 11122456889999999999988775432 4443 675 79999999999843
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0024 Score=68.09 Aligned_cols=55 Identities=5% Similarity=0.038 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhc--------CCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISL--------GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~--------G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
.+.+.|.+++.+. |++|+.+++|++|..++++++|++.+|++++||.||.|.+..
T Consensus 207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~ 269 (472)
T 1b37_A 207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLG 269 (472)
T ss_dssp HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHH
T ss_pred HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHH
Confidence 3445555555443 678999999999999999999999889899999999999853
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.022 Score=56.80 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=62.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+.... .
T Consensus 157 ~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~------------------------------------------~- 193 (319)
T 3cty_A 157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC------------------------------------------E- 193 (319)
T ss_dssp EEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS------------------------------------------C-
T ss_pred eEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC------------------------------------------C-
Confidence 59999976 588899999999999999997542100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEc---CCc--EEEcCEEEEccCCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~---dG~--~i~ArlVI~ADG~~ 260 (549)
..+.+++.+.|++++.+++++++..+++.+ .|.+. +|+ ++.+|.||-|.|..
T Consensus 194 ------------------~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (319)
T 3cty_A 194 ------------------NAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLI 251 (319)
T ss_dssp ------------------HHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEE
T ss_pred ------------------HHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCc
Confidence 012233446789999999999998765412 34443 564 69999999998854
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=68.80 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=30.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
+||+|||||| .|+++|..|++.|++|+|||+..
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~ 38 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 38 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 6999999976 58899999999999999999886
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0029 Score=68.43 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=30.6
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.+||+|||||| .|+++|..|++.|++|+|||+..
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~ 44 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR 44 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence 37999999976 58899999999999999999875
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.02 Score=56.61 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=61.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+... . .
T Consensus 146 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------------~----------------------~- 182 (310)
T 1fl2_A 146 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--------------------A----------------------D- 182 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--------------------S----------------------C-
T ss_pred EEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--------------------c----------------------c-
Confidence 59999976 59989999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEE-EEEEc---CCc--EEEcCEEEEccCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGN 259 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv-~V~~~---dG~--~i~ArlVI~ADG~ 259 (549)
+.+.+++.+ .|++++.+++++++..+++.+ .|.+. +|+ ++.++.||-|.|.
T Consensus 183 ------------------~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 240 (310)
T 1fl2_A 183 ------------------QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 240 (310)
T ss_dssp ------------------HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred ------------------HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence 012233444 588999999999998655543 34443 353 6899999998884
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0029 Score=69.15 Aligned_cols=36 Identities=39% Similarity=0.498 Sum_probs=31.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhC-CCcEEEEccCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLK 144 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~-GlrVlLIEr~~~~ 144 (549)
.+||+|||||| .|+++|..|++. |++|+|||+....
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 36999999976 599999999998 9999999998643
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0036 Score=66.84 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=31.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
.+||+||||| +|+++|..|+++|++|+|+|+.+..
T Consensus 122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~ 157 (456)
T 2vdc_G 122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM 157 (456)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 5899999965 6899999999999999999998654
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.01 Score=62.71 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=66.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..+++.|.+|.|+|+...... .. ..
T Consensus 149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~------------------~~----------------------d~ 188 (437)
T 4eqs_A 149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK------------------LM----------------------DA 188 (437)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCST------------------TS----------------------CG
T ss_pred EEEEECCccchhhhHHHHHhcCCcceeeeeeccccc------------------cc----------------------cc
Confidence 59999976 599999999999999999998652110 00 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. +.+.+.+.+.+.|++++.++++++++ .+ .|.+++|+++.+|+||.|.|...
T Consensus 189 ~---------------~~~~~~~~l~~~gV~i~~~~~v~~~~--~~--~v~~~~g~~~~~D~vl~a~G~~P 240 (437)
T 4eqs_A 189 D---------------MNQPILDELDKREIPYRLNEEINAIN--GN--EITFKSGKVEHYDMIIEGVGTHP 240 (437)
T ss_dssp G---------------GGHHHHHHHHHTTCCEEESCCEEEEE--TT--EEEETTSCEEECSEEEECCCEEE
T ss_pred h---------------hHHHHHHHhhccceEEEeccEEEEec--CC--eeeecCCeEEeeeeEEEEeceec
Confidence 0 11234455667899999999998864 33 35677899999999999999653
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.029 Score=59.60 Aligned_cols=94 Identities=14% Similarity=0.209 Sum_probs=68.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++++.+..-.. +
T Consensus 174 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~---- 211 (466)
T 3l8k_A 174 DMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT--------------------------------------L---- 211 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT--------------------------------------S----
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC--------------------------------------C----
Confidence 59999976 5999999999999999999986521100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEEC-CEEEEEEc--CCc--EEEcCEEEEccCCChH
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLLA--EGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv~V~~~--dG~--~i~ArlVI~ADG~~S~ 262 (549)
++ ..+.+.+.+.+. ++++.+++++++..++ +++.|.++ +|+ ++.+|.||-|.|....
T Consensus 212 -----------~d-~~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~ 273 (466)
T 3l8k_A 212 -----------ED-QDIVNTLLSILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPV 273 (466)
T ss_dssp -----------CC-HHHHHHHHHHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEEC
T ss_pred -----------CC-HHHHHHHHhcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcc
Confidence 00 011222333332 8899999999998877 78888887 565 8999999999997644
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0041 Score=69.60 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=32.1
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
...+||+||||| +|+.+|..|+++|++|+|||+.+..+
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~g 409 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG 409 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 346899999976 58888999999999999999986543
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0035 Score=69.14 Aligned_cols=36 Identities=28% Similarity=0.564 Sum_probs=31.5
Q ss_pred CcccEEEEcch-HHHHHHHHHHh-CCCcEEEEccCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTLK 144 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr-~GlrVlLIEr~~~~ 144 (549)
.+||+|||||| .|+++|..|++ .|++|+|||+....
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 46999999976 59999999999 79999999998653
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0043 Score=70.16 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=31.9
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
...+||+||||| +|+++|..|+++|++|+|||+....
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~ 424 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 424 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 346899999975 6889999999999999999998654
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.04 Score=55.01 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=61.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+.... +
T Consensus 154 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------~------------------------------------- 190 (325)
T 2q7v_A 154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA------N------------------------------------- 190 (325)
T ss_dssp EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS------C-------------------------------------
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc------c-------------------------------------
Confidence 59999976 599899999999999999997642110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEEEEEc---CCc--EEEcCEEEEccCCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~---dG~--~i~ArlVI~ADG~~ 260 (549)
..+.+++.+ .|++++.+++++++..++....|.+. +|+ ++.+|.||-|.|..
T Consensus 191 ------------------~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 248 (325)
T 2q7v_A 191 ------------------KVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHV 248 (325)
T ss_dssp ------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred ------------------hHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCC
Confidence 001223333 48899999999999764332234443 564 79999999998844
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.06 Score=58.14 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=66.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++++..... .
T Consensus 212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~----------------------~---------------------- 247 (519)
T 3qfa_A 212 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR----------------------G---------------------- 247 (519)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST----------------------T----------------------
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecccccc----------------------c----------------------
Confidence 48999976 59999999999999999998742100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEEC----CEEEEEE--cCC-c--EEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE----NAAVLLL--AEG-K--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~----dgv~V~~--~dG-~--~i~ArlVI~ADG~~S 261 (549)
++ ..+.+.+.+.+++.|++++.+++++.+...+ +.+.+++ .+| + ++.+|.||-|.|...
T Consensus 248 -----------~d-~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p 315 (519)
T 3qfa_A 248 -----------FD-QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA 315 (519)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEE
T ss_pred -----------CC-HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcc
Confidence 00 1133445566777899999999988887543 3455544 344 2 578999999999764
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.037 Score=54.64 Aligned_cols=90 Identities=18% Similarity=0.090 Sum_probs=64.0
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+|+||| .|+-+|..|++.|.+|.++++.+....
T Consensus 155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------- 191 (323)
T 3f8d_A 155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA------------------------------------------- 191 (323)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS-------------------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc-------------------------------------------
Confidence 359999976 599999999999999999987642110
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEEEEEEcC---Cc--EEEcCEEEEccCCCh
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~d---G~--~i~ArlVI~ADG~~S 261 (549)
++ .+.+++.+ .|++++.+++++++..++....|.+.+ |+ ++.+|+||-|.|...
T Consensus 192 -------------~~-----~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p 251 (323)
T 3f8d_A 192 -------------QP-----IYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDP 251 (323)
T ss_dssp -------------CH-----HHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEC
T ss_pred -------------CH-----HHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCC
Confidence 00 01123333 488999999999998765444466554 65 799999999998653
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.018 Score=57.36 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=62.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+.... .+
T Consensus 156 ~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~------------------------~~------------------ 193 (332)
T 3lzw_A 156 RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA------------------------HE------------------ 193 (332)
T ss_dssp EEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS------------------------CH------------------
T ss_pred EEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc------------------------cH------------------
Confidence 59999976 599999999999999999987642100 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC-----CcEEEcCEEEEccCCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-----GKILSSHLIIDAMGNF 260 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d-----G~~i~ArlVI~ADG~~ 260 (549)
. ..+++.+.|++++.+++++++..+++...|.+.+ +.++.+|+||-|.|..
T Consensus 194 --------------~-----~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~ 249 (332)
T 3lzw_A 194 --------------H-----SVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFV 249 (332)
T ss_dssp --------------H-----HHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEE
T ss_pred --------------H-----HHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccC
Confidence 0 0122456799999999999997765544455543 3479999999998843
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0093 Score=64.42 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=29.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
+..||||||| +|+.+|..|++.+++|+|||+++.
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~ 76 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY 76 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence 4579999977 588888899999999999998763
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0061 Score=68.12 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=35.4
Q ss_pred CCEEEeCceEEEEEEECCEEEEEEcC------CcEEEcCEEEEccC
Q 008915 219 GGVIFEGYSVSSICTYENAAVLLLAE------GKILSSHLIIDAMG 258 (549)
Q Consensus 219 G~~v~~~t~v~~i~~~~dgv~V~~~d------G~~i~ArlVI~ADG 258 (549)
+.+|+.+++|++|..++++++|++.+ +++++||.||.|..
T Consensus 410 ~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP 455 (662)
T 2z3y_A 410 GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLP 455 (662)
T ss_dssp TCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCC
T ss_pred cCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCC
Confidence 56899999999999999999998865 56899999999886
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.081 Score=58.02 Aligned_cols=95 Identities=18% Similarity=0.173 Sum_probs=65.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++++....+. +
T Consensus 288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~------------------------ 324 (598)
T 2x8g_A 288 KTLVIGASYVALECAGFLASLGGDVTVMVRSILLRG-------------------F------------------------ 324 (598)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT-------------------S------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcCc-------------------C------------------------
Confidence 59999977 599999999999999999997521000 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE------C---CEEEEE--EcCCcEEE--cCEEEEcc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY------E---NAAVLL--LAEGKILS--SHLIIDAM 257 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~------~---dgv~V~--~~dG~~i~--ArlVI~AD 257 (549)
+ ..+.+.+.+.+++.|++++.++.++.+... + +.+.++ ..+|+++. ++.||-|.
T Consensus 325 ------------d-~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~ 391 (598)
T 2x8g_A 325 ------------D-QQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAV 391 (598)
T ss_dssp ------------C-HHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECS
T ss_pred ------------C-HHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEe
Confidence 0 011233445566779999999988888643 2 445554 35676555 99999999
Q ss_pred CCChH
Q 008915 258 GNFSP 262 (549)
Q Consensus 258 G~~S~ 262 (549)
|....
T Consensus 392 G~~p~ 396 (598)
T 2x8g_A 392 GREPQ 396 (598)
T ss_dssp CEEEC
T ss_pred CCccc
Confidence 97654
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.012 Score=57.47 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=60.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+|+||| .|+-+|..|++.| +|.++++.+. .+
T Consensus 142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~-------~~------------------------------------- 176 (297)
T 3fbs_A 142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV-------EP------------------------------------- 176 (297)
T ss_dssp CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC-------CC-------------------------------------
T ss_pred CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC-------CC-------------------------------------
Confidence 368999976 5999999999999 9999976532 00
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
+ +.+.+.+.+.|++++. ++++++.. ++ .|.+.+|+++.++.||-|.|..
T Consensus 177 -------------~-----~~~~~~l~~~gv~i~~-~~v~~i~~--~~-~v~~~~g~~~~~D~vi~a~G~~ 225 (297)
T 3fbs_A 177 -------------D-----ADQHALLAARGVRVET-TRIREIAG--HA-DVVLADGRSIALAGLFTQPKLR 225 (297)
T ss_dssp -------------C-----HHHHHHHHHTTCEEEC-SCEEEEET--TE-EEEETTSCEEEESEEEECCEEE
T ss_pred -------------C-----HHHHHHHHHCCcEEEc-ceeeeeec--CC-eEEeCCCCEEEEEEEEEccCcc
Confidence 0 0123344567888885 88888753 33 6777788899999999999853
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.03 Score=55.99 Aligned_cols=88 Identities=20% Similarity=0.137 Sum_probs=62.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| .|+-+|..|++.|.+|.++++.+... . .
T Consensus 161 ~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~------~------------------------------------~- 197 (333)
T 1vdc_A 161 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR------A------------------------------------S- 197 (333)
T ss_dssp EEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC------S------------------------------------C-
T ss_pred eEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC------c------------------------------------c-
Confidence 69999976 59999999999999999999865211 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHH-HHhcCCEEEeCceEEEEEEECC--EE-EEEEc---CC--cEEEcCEEEEccCCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKR-FISLGGVIFEGYSVSSICTYEN--AA-VLLLA---EG--KILSSHLIIDAMGNF 260 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~-a~~~G~~v~~~t~v~~i~~~~d--gv-~V~~~---dG--~~i~ArlVI~ADG~~ 260 (549)
+.+.++ +++.|++++.+++++++..+++ .+ .|.+. +| .++.+|.||-|.|..
T Consensus 198 ------------------~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 258 (333)
T 1vdc_A 198 ------------------KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHE 258 (333)
T ss_dssp ------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred ------------------HHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCc
Confidence 001112 2356889999999999987654 33 24443 35 479999999999854
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0093 Score=68.53 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=34.6
Q ss_pred CCEEEeCceEEEEEEECCEEEEEEcC------CcEEEcCEEEEccC
Q 008915 219 GGVIFEGYSVSSICTYENAAVLLLAE------GKILSSHLIIDAMG 258 (549)
Q Consensus 219 G~~v~~~t~v~~i~~~~dgv~V~~~d------G~~i~ArlVI~ADG 258 (549)
+..|+.+++|+.|..+++++.|++.+ +++++||.||.|.-
T Consensus 581 ~l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvP 626 (852)
T 2xag_A 581 GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLP 626 (852)
T ss_dssp TCCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCC
T ss_pred CCCEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCC
Confidence 45799999999999999999998765 56899999998875
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.057 Score=58.77 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=28.9
Q ss_pred cEEEEcchH-HHHHHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCGGTL-GIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.|+|||||. |+-+|..|++.|.+|.+++|.+.
T Consensus 180 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 180 RVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ 212 (540)
T ss_dssp EEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred eEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 599999875 99999999999999999999875
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.055 Score=54.35 Aligned_cols=90 Identities=17% Similarity=0.078 Sum_probs=60.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
-.|+|+||| .|+-+|..|++.|.+|.++++.+... . .
T Consensus 156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~--------------------~----------------------~ 193 (335)
T 2a87_A 156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR--------------------A----------------------S 193 (335)
T ss_dssp CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS--------------------S----------------------C
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC--------------------c----------------------c
Confidence 369999976 59999999999999999999764210 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC--EEEEEE-cCC--cEEEcCEEEEccCCC
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLL-AEG--KILSSHLIIDAMGNF 260 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d--gv~V~~-~dG--~~i~ArlVI~ADG~~ 260 (549)
. .+.+ +.+.+.|++++.+++++++..+++ ++.+.. .+| +++.+|.||-|.|..
T Consensus 194 ~---------------~~~~---~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (335)
T 2a87_A 194 K---------------IMLD---RARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHE 251 (335)
T ss_dssp T---------------THHH---HHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEE
T ss_pred H---------------HHHH---HHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCc
Confidence 0 0000 112356889999999999875543 244442 134 478999999888843
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.058 Score=58.14 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE--cCCc----EEEcCEEEEccCCC
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEGK----ILSSHLIIDAMGNF 260 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~dG~----~i~ArlVI~ADG~~ 260 (549)
.+-+.+.+.+++.|++++.+++|++++ ++++.+.. .||+ ++.|++||-|.|..
T Consensus 273 ~~~~~~~~~L~~~GV~v~~~~~v~~v~--~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~ 331 (502)
T 4g6h_A 273 KLSSYAQSHLENTSIKVHLRTAVAKVE--EKQLLAKTKHEDGKITEETIPYGTLIWATGNK 331 (502)
T ss_dssp HHHHHHHHHHHHTTCEEETTEEEEEEC--SSEEEEEEECTTSCEEEEEEECSEEEECCCEE
T ss_pred HHHHHHHHHHHhcceeeecCceEEEEe--CCceEEEEEecCcccceeeeccCEEEEccCCc
Confidence 455666777888899999999999874 56665544 4553 69999999999953
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.013 Score=62.46 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=30.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCC--CcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~G--lrVlLIEr~~~~~ 145 (549)
.+||+||||| +|+.+|..|+++| ++|+|||+.+.+.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g 44 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF 44 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC
Confidence 5899999976 5888999999988 9999999987543
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.012 Score=64.21 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.8
Q ss_pred cEEEEcchH-HHHHHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCGGTL-GIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.|+|||||. |.-+|..|++.|.+|.|++|.+.
T Consensus 187 rV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 187 RVGVIGTGATGVQIIPIAAETAKELYVFQRTPN 219 (545)
T ss_dssp EEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred eEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence 599999775 99999999999999999999874
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.013 Score=61.06 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=60.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+.+-.. .
T Consensus 148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~------------------------------~------------ 185 (385)
T 3klj_A 148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER------------------------------Q------------ 185 (385)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT------------------------------T------------
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh------------------------------h------------
Confidence 59999976 5999999999999999999987531100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
++ ..+.+.+.+.+++.|++++.+++++++ |+++.+|+||-|.|...
T Consensus 186 -----------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------g~~~~~D~vv~a~G~~p 231 (385)
T 3klj_A 186 -----------LD-RDGGLFLKDKLDRLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGVKP 231 (385)
T ss_dssp -----------SC-HHHHHHHHHHHHTTTCEEECSCCGGGC-------------HHHHHHSEEEECCCEEE
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEc-------------CeEEecCeEEECcCccc
Confidence 00 122344555666778888888877665 55688999999999754
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.015 Score=68.24 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=30.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCC-cEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~~~ 144 (549)
.+||+||||| +|+++|..|+++|+ +|+|+||....
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~ 223 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV 223 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence 5899999965 68899999999999 79999998643
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.14 Score=54.39 Aligned_cols=132 Identities=17% Similarity=0.115 Sum_probs=72.8
Q ss_pred ccEEEEcch-HHHHHHHHHH--------------------hCCC-cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCc
Q 008915 111 FDVIVCGGT-LGIFIATALS--------------------FKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVE 168 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA--------------------r~Gl-rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~ 168 (549)
-.|+||||| .|+=+|..|+ +.|. +|.|++|...... ..+..++..|..+.-.+.
T Consensus 146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~----~ft~~el~~l~~lp~~~~ 221 (460)
T 1cjc_A 146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQV----AFTIKELREMIQLPGTRP 221 (460)
T ss_dssp SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGC----CCCHHHHHHHHTCTTEEE
T ss_pred CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhh----ccCHHHHHHhhcCCCcee
Confidence 369999977 5998999988 6788 6999998764321 355566655543321000
Q ss_pred ccchhhhhhccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHh--------------cCCEEEeCceEEEEEEE
Q 008915 169 DDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS--------------LGGVIFEGYSVSSICTY 234 (549)
Q Consensus 169 ~eie~~i~~~~~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~--------------~G~~v~~~t~v~~i~~~ 234 (549)
.++. .++.. ....+ +. ++- ....+.+.|.+.+.+ .|++++.+++++++..+
T Consensus 222 -~~~~---~~~~~-------~~~~~-~~-~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~ 286 (460)
T 1cjc_A 222 -MLDP---ADFLG-------LQDRI-KE-AAR--PRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPS 286 (460)
T ss_dssp -ECCG---GGGTT-------HHHHT-TT-SCH--HHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEEC
T ss_pred -Eech---hhhcc-------hhhhh-hh-ccH--HHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcC
Confidence 0000 00000 00000 00 000 012244555555554 78899999999998765
Q ss_pred C-C-E---EEEEEc-------------CC--cEEEcCEEEEccCCCh
Q 008915 235 E-N-A---AVLLLA-------------EG--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 235 ~-d-g---v~V~~~-------------dG--~~i~ArlVI~ADG~~S 261 (549)
+ + . +++... +| +++.|++||-|.|..+
T Consensus 287 ~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p 333 (460)
T 1cjc_A 287 PDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKS 333 (460)
T ss_dssp TTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEEC
T ss_pred CCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCC
Confidence 3 3 2 333210 23 4788888888888554
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.018 Score=61.38 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=30.2
Q ss_pred cccEEEEcch-HHHHHHHHHHh-C------CCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSF-K------GLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr-~------GlrVlLIEr~~~~ 144 (549)
.+||+||||| +|+.+|..|++ + |++|+|||+.+.+
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~ 45 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP 45 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence 5899999975 58889999999 7 9999999998654
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.076 Score=57.88 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=28.7
Q ss_pred cEEEEcchH-HHHHHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCGGTL-GIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.|+|||||. |.-+|..|++.|.+|.+++|.+.
T Consensus 193 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 225 (549)
T 4ap3_A 193 RVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN 225 (549)
T ss_dssp EEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred EEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 599999775 99999999999999999999874
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.17 Score=54.71 Aligned_cols=87 Identities=17% Similarity=0.098 Sum_probs=61.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++++.+.... .
T Consensus 357 ~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~------------------------------------------~- 393 (521)
T 1hyu_A 357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA------------------------------------------D- 393 (521)
T ss_dssp EEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS------------------------------------------C-
T ss_pred eEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc------------------------------------------C-
Confidence 69999976 599899999999999999987642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEECCEE-EEEEc---CCc--EEEcCEEEEccCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGN 259 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv-~V~~~---dG~--~i~ArlVI~ADG~ 259 (549)
+.+.+++.+ .|++++.++.++++..+++.+ .|.+. +|+ ++.++.||-|.|.
T Consensus 394 ------------------~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 451 (521)
T 1hyu_A 394 ------------------QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGL 451 (521)
T ss_dssp ------------------HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred ------------------HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence 112334444 478999999999997655544 34443 353 6889999988873
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.12 Score=54.97 Aligned_cols=131 Identities=21% Similarity=0.163 Sum_probs=70.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--------------------CC-cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCc
Q 008915 111 FDVIVCGGT-LGIFIATALSFK--------------------GL-RVAIVERNTLKGREQEWNISRKELLELVESGILVE 168 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~--------------------Gl-rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~ 168 (549)
-.|+||||| .|+=+|..|++. |. +|.||+|...... ..+..++..|..+. .
T Consensus 148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~----~f~~~elrel~~lp---~ 220 (456)
T 1lqt_A 148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQA----AFTTLELRELADLD---G 220 (456)
T ss_dssp SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGC----CCCHHHHHHGGGCT---T
T ss_pred CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhh----ccChHHHHHhhcCC---C
Confidence 369999976 599899988874 65 9999998764221 24444444332221 0
Q ss_pred ccchhhhhhccCCCcccccCCccccccccccceeC--HHHHHHHHHHHHHh------cCCEEEeCceEEEEEEECC--EE
Q 008915 169 DDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVS--PAKLIEIVKKRFIS------LGGVIFEGYSVSSICTYEN--AA 238 (549)
Q Consensus 169 ~eie~~i~~~~~~~~i~f~~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~------~G~~v~~~t~v~~i~~~~d--gv 238 (549)
++ ++ +.+..+. ....... ...+ ...+.+.|.+.+.+ .|++++.+++++++..++. ++
T Consensus 221 --~~-~~---~~~~~~~-~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v 287 (456)
T 1lqt_A 221 --VD-VV---IDPAELD-GITDEDA------AAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERI 287 (456)
T ss_dssp --EE-EE---CCGGGGT-TCCHHHH------HHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEE
T ss_pred --ce-ee---eChHHhc-cchhhhh------hhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEE
Confidence 00 00 0000000 0000000 0001 12234556666655 6889999999999865422 24
Q ss_pred EEEE--------------cCC--cEEEcCEEEEccCCCh
Q 008915 239 VLLL--------------AEG--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 239 ~V~~--------------~dG--~~i~ArlVI~ADG~~S 261 (549)
++.. .+| +++.|++||-|.|..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p 326 (456)
T 1lqt_A 288 VLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG 326 (456)
T ss_dssp EEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEEC
T ss_pred EEEEEEecCCCcccccccCCCceEEEEcCEEEEcccccc
Confidence 4331 123 3688888888888553
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.038 Score=62.08 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=29.6
Q ss_pred cccEEEEcchH-HHHHHHHHHhCC--------CcEEEEccCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKG--------LRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~G--------lrVlLIEr~~ 142 (549)
..+|+|||||+ |+++|..|+++| ++|+|+|+..
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~ 97 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP 97 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence 47999999875 888999999998 9999999986
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.42 Score=53.18 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC--cEEEcCEEEEccCCCh
Q 008915 209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFS 261 (549)
Q Consensus 209 ~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG--~~i~ArlVI~ADG~~S 261 (549)
..+.+.+++.|++++.+++++++. +++++++ .+| +++.+|.||-|.|...
T Consensus 577 ~~~~~~l~~~GV~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G~~p 628 (671)
T 1ps9_A 577 WIHRTTLLSRGVKMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAGQEP 628 (671)
T ss_dssp HHHHHHHHHTTCEEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCCEEE
T ss_pred HHHHHHHHhcCCEEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCCccc
Confidence 445666777899999999999885 5676665 567 5799999999999764
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.46 Score=49.10 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
+.+.+.+.+++.|++++.++++++++ +++ |.+++|+++.+|+||-|.|..
T Consensus 220 ~~~~~~~~l~~~gV~~~~~~~v~~i~--~~~--v~~~~g~~~~~D~vi~a~G~~ 269 (409)
T 3h8l_A 220 SRKAVASIYNQLGIKLVHNFKIKEIR--EHE--IVDEKGNTIPADITILLPPYT 269 (409)
T ss_dssp HHHHHHHHHHHHTCEEECSCCEEEEC--SSE--EEETTSCEEECSEEEEECCEE
T ss_pred HHHHHHHHHHHCCCEEEcCCceEEEC--CCe--EEECCCCEEeeeEEEECCCCC
Confidence 34455666677899999999999885 344 566788899999999998854
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.15 Score=53.58 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCc-EEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Glr-VlLIEr~~ 142 (549)
.|+||||| .|+=+|..|++.|.+ |.|++|..
T Consensus 214 ~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~ 246 (447)
T 2gv8_A 214 SVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG 246 (447)
T ss_dssp CEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred EEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence 59999987 588899999999999 99999864
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.47 Score=53.39 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=27.3
Q ss_pred cEEEEc--ch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCG--GT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVG--Gg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+||| || .|+-+|..|++.|.+|.++++.+
T Consensus 530 ~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~ 563 (729)
T 1o94_A 530 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 563 (729)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred eEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence 699998 55 69999999999999999999865
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.32 Score=56.67 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=65.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... .
T Consensus 286 ~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~--------~------------------------------------ 321 (965)
T 2gag_A 286 RIAVATTNDSAYELVRELAATGGVVAVIDARSSIS--------A------------------------------------ 321 (965)
T ss_dssp SEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC--------H------------------------------------
T ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc--------h------------------------------------
Confidence 58999976 59999999999999999999764210 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEE-CCEE-EEEEcC-------C--cEEEcCEEEEccCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA-VLLLAE-------G--KILSSHLIIDAMGN 259 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv-~V~~~d-------G--~~i~ArlVI~ADG~ 259 (549)
. .+++++.|++++.+++++++..+ ++++ .|++.+ | +++.+|.||-|.|.
T Consensus 322 --------------~------~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~ 381 (965)
T 2gag_A 322 --------------A------AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGF 381 (965)
T ss_dssp --------------H------HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCE
T ss_pred --------------h------HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCc
Confidence 0 13345678999999999998764 3432 344332 4 57999999999996
Q ss_pred Ch--HHHHHhc
Q 008915 260 FS--PVVKQIR 268 (549)
Q Consensus 260 ~S--~vrrql~ 268 (549)
.. .+.++.+
T Consensus 382 ~P~~~l~~~~~ 392 (965)
T 2gag_A 382 NPVVHLHSQRQ 392 (965)
T ss_dssp EECCHHHHHTT
T ss_pred CcChHHHHhCC
Confidence 43 3455543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.17 Score=44.28 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=28.4
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-.|+|+|. ..|..+|..|.+.|++|.++|+.+
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 45999995 579999999999999999999864
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.89 Score=53.23 Aligned_cols=31 Identities=35% Similarity=0.262 Sum_probs=27.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-cEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.|+||||| .|+=+|..+++.|. +|.+++|.+
T Consensus 334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 366 (1025)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence 79999987 59999999999997 899999864
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.18 Score=44.87 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=28.2
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-.|+|+|+ .+|..+|..|.+.|++|.++|+.+
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 45999995 579999999999999999999865
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=91.01 E-value=0.48 Score=50.21 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=27.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+||||| .|+=+|..|++.|.+|.++++.+
T Consensus 199 ~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~ 230 (464)
T 2xve_A 199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT 230 (464)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred EEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence 59999977 59999999999999999999765
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.77 E-value=0.19 Score=43.66 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=27.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+|+|+| .|..+|..|+++|++|.++|+.+
T Consensus 8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 59999954 79999999999999999999854
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=90.39 E-value=0.28 Score=51.54 Aligned_cols=36 Identities=33% Similarity=0.547 Sum_probs=31.8
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+|||||||||+ |+++|+.|+++|++|+|+|++..++
T Consensus 6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g 42 (433)
T 1d5t_A 6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG 42 (433)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence 69999999775 8889999999999999999987553
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=90.04 E-value=0.4 Score=51.28 Aligned_cols=37 Identities=30% Similarity=0.547 Sum_probs=32.7
Q ss_pred CcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+|||||||+|+ |+++|+.|+++|++|+|+||++..+
T Consensus 19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~G 56 (475)
T 3p1w_A 19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYG 56 (475)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 469999999875 8889999999999999999997654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.97 E-value=0.25 Score=42.34 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=27.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
..|+|+|+| +|..+|..|++.|++|.++|+.+
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999955 79999999999999999999753
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=0.32 Score=51.43 Aligned_cols=35 Identities=34% Similarity=0.338 Sum_probs=30.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCC-cEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~~~ 144 (549)
.+||+||||| .|+++|..|+++|+ +|+|+|+...+
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~ 40 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI 40 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 6899999976 58899999999999 89999998654
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=1.6 Score=45.55 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE--cC-----CcEEEcCEEEEccCC
Q 008915 209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AE-----GKILSSHLIIDAMGN 259 (549)
Q Consensus 209 ~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~d-----G~~i~ArlVI~ADG~ 259 (549)
+.+.+.+++.|++++.++++++++ +++++++. .+ ++++.++++|-|.|.
T Consensus 212 ~~~~~~l~~~gI~~~~~~~v~~v~--~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~ 267 (437)
T 3sx6_A 212 GILTKGLKEEGIEAYTNCKVTKVE--DNKMYVTQVDEKGETIKEMVLPVKFGMMIPAF 267 (437)
T ss_dssp HHHHHHHHHTTCEEECSEEEEEEE--TTEEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEE--CCeEEEEecccCCccccceEEEEeEEEEcCCC
Confidence 345566677899999999999874 56666654 23 457999999999873
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=88.98 E-value=0.27 Score=48.97 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=26.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-.|+||||| .|+-+|..|++.| +|.++.+..
T Consensus 164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~ 195 (357)
T 4a9w_A 164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE 195 (357)
T ss_dssp SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence 369999976 5999999999999 799999874
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=88.74 E-value=0.6 Score=49.19 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=32.9
Q ss_pred CcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+|||||||||+ |+++|+.|+++|++|+|+||+..++
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~G 47 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 47 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 369999999875 8889999999999999999998765
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=88.40 E-value=0.32 Score=47.27 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=28.8
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
-.|+|+| ||+|+.+|..|++.|. ++.|+|+...
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v 66 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV 66 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence 4599999 7899999999999998 8999998653
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=88.38 E-value=0.33 Score=40.19 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=27.7
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCC-CcEEEEccCC
Q 008915 111 FDVIVCGG-TLGIFIATALSFKG-LRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LAr~G-lrVlLIEr~~ 142 (549)
-.|+|+|+ ++|..+|..|.+.| ++|.+++|.+
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 46999995 57999999999999 9999999864
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=87.98 E-value=0.4 Score=41.14 Aligned_cols=31 Identities=29% Similarity=0.250 Sum_probs=27.2
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+|+|+ .+|..+|..|.+.|++|.++|+.+
T Consensus 8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4999995 579999999999999999999753
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.86 E-value=0.51 Score=41.67 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=27.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+|+|+| .|...|..|.+.|++|.++|+.+
T Consensus 5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 48999965 79999999999999999999863
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.21 E-value=0.45 Score=44.78 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+|+|+| .|..+|..|.++|++|.++|+.+
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 38999976 69999999999999999999764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.04 E-value=0.38 Score=43.86 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.4
Q ss_pred cEEEEcc-hHHHHHHHHHHhC-CCcEEEEccCC
Q 008915 112 DVIVCGG-TLGIFIATALSFK-GLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LAr~-GlrVlLIEr~~ 142 (549)
.|+|+|. .+|..+|..|.+. |++|.++|+.+
T Consensus 41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 41 QVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred cEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 5999994 5799999999999 99999999864
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=86.72 E-value=0.47 Score=46.77 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=28.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+.
T Consensus 147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 179 (312)
T 4gcm_A 147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE 179 (312)
T ss_dssp EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence 59999977 599999999999999999998753
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=86.55 E-value=0.49 Score=47.83 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=27.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|||+| +|.-.|..+|.+|++|.|+|..+
T Consensus 8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 59999965 69999999999999999999765
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=86.18 E-value=0.61 Score=46.29 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=27.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|||+| +|..+|..|+++|++|.++|+.+
T Consensus 17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 49999955 79999999999999999999864
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=85.93 E-value=1.1 Score=45.20 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=27.5
Q ss_pred cEEEEc-chHHHH-HHHHHHhCCCcEEEEccCCC
Q 008915 112 DVIVCG-GTLGIF-IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVG-Gg~G~~-~Aa~LAr~GlrVlLIEr~~~ 143 (549)
-|.|+| ||.|++ +|..|+++|++|.+.|+...
T Consensus 6 ~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~ 39 (326)
T 3eag_A 6 HIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY 39 (326)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred EEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 489999 789996 67788999999999998754
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=85.77 E-value=0.67 Score=46.45 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|+|+| +|++.|..|++.|.+|.+++|.+
T Consensus 4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 4 NILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp EEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 58999965 69999999999999999999864
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=85.70 E-value=0.64 Score=45.57 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=28.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
-.|+|+||| .|+-+|..|++.|.+|.|+||...
T Consensus 153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~ 186 (314)
T 4a5l_A 153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA 186 (314)
T ss_dssp SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred CeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence 359999976 699999999999999999998654
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=85.66 E-value=0.41 Score=48.24 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=24.9
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|.| ||+|=+ +|++||+.|.||+|||-.+-
T Consensus 51 IAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 51 FAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred EEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 66779 887654 67788999999999998753
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=85.37 E-value=0.62 Score=45.88 Aligned_cols=31 Identities=39% Similarity=0.491 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 6 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 6 NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999955 79999999999999999999865
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=84.36 E-value=0.76 Score=45.88 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|+|+| .|++.|..|+++|.+|.+++|..
T Consensus 4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 4 RIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 58999965 69999999999999999999853
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=83.83 E-value=0.92 Score=44.04 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|-|| |+|..+|..|++.|.+|+++++..
T Consensus 5 vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 5 VIVTGGGHGIGKQICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEecCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 788885 789999999999999999999864
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=83.82 E-value=0.97 Score=43.98 Aligned_cols=30 Identities=33% Similarity=0.266 Sum_probs=27.2
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+|+| +|...|..|+++|++|.+++|.+
T Consensus 3 i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 8899955 79999999999999999999875
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=83.67 E-value=0.9 Score=44.12 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=27.8
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
..|+|+| ||+|+.+|..|++.|+ ++.|+|...
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4699999 7899999999999998 678888765
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=83.41 E-value=0.96 Score=43.50 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=27.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 10 vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~ 41 (252)
T 3h7a_A 10 VAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG 41 (252)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 788894 789999999999999999999864
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=83.19 E-value=1 Score=42.37 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=26.9
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 4 vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 4 IVITGASSGLGAELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred EEEecCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 788895 689999999999999999999864
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.66 E-value=1.1 Score=42.58 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 6 vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~ 37 (235)
T 3l6e_A 6 IIVTGAGSGLGRALTIGLVERGHQVSMMGRRY 37 (235)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 788894 789999999999999999999864
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.52 E-value=2.6 Score=40.88 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=28.2
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
|+|.|| |+|..+|..|+++|.+|++++|....
T Consensus 13 vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~ 46 (287)
T 3pxx_A 13 VLVTGGARGQGRSHAVKLAEEGADIILFDICHDI 46 (287)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCC
T ss_pred EEEeCCCChHHHHHHHHHHHCCCeEEEEcccccc
Confidence 888895 78999999999999999999987543
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=82.42 E-value=1.1 Score=45.31 Aligned_cols=30 Identities=17% Similarity=0.510 Sum_probs=26.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
.|.|+|+| +|++.|..|+++|++|.+++|.
T Consensus 5 kI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 5 RICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred EEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 58999955 7999999999999999999974
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=82.09 E-value=1.3 Score=41.49 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=28.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
..|.|+|.| +|.+.|..|+++|++|.+++|.+
T Consensus 20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~ 52 (209)
T 2raf_A 20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD 52 (209)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 459999965 79999999999999999999864
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.00 E-value=1.2 Score=42.65 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=27.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
++|.|| |+|..+|..|+++|.+|.+++|...
T Consensus 10 ~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 10 FIVTGASSGLGAAVTRMLAQEGATVLGLDLKPP 42 (257)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 788895 6899999999999999999998764
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=81.98 E-value=1.3 Score=42.98 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=27.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
++|-|| |+|..+|..|++.|.+|.+.+|...
T Consensus 14 alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~ 46 (242)
T 4b79_A 14 VLVTGGSSGIGAAIAMQFAELGAEVVALGLDAD 46 (242)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 677785 7899999999999999999998764
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=81.85 E-value=1.3 Score=42.51 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=28.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
|+|.|| |+|..+|..|+++|.+|.+++|....
T Consensus 25 vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~ 58 (251)
T 3orf_A 25 ILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP 58 (251)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 888894 68999999999999999999998653
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=81.80 E-value=0.84 Score=45.16 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=27.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|+|+| +|++.|..|+++|.+|.+++|..
T Consensus 4 kI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 4 SVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp CEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 58999965 69999999999999999999874
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=81.64 E-value=1.2 Score=42.59 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|++++|..
T Consensus 15 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~ 46 (252)
T 3f1l_A 15 ILVTGASDGIGREAAMTYARYGATVILLGRNE 46 (252)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 788885 689999999999999999999864
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=81.58 E-value=2.9 Score=41.21 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=27.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
++|.|| |+|..+|..|+++|.+|+++++...
T Consensus 31 ~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~ 63 (299)
T 3t7c_A 31 AFITGAARGQGRSHAITLAREGADIIAIDVCKQ 63 (299)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEecccc
Confidence 888895 7899999999999999999998754
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=81.46 E-value=1.1 Score=47.81 Aligned_cols=33 Identities=15% Similarity=0.348 Sum_probs=29.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
...|.|+|.| +|+.+|..||++|++|.++|+.+
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4679999955 79999999999999999999764
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=81.32 E-value=1.3 Score=43.57 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=27.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|.|+|+| +|...|..|+++|++|.+++|.+
T Consensus 5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred eEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 58999965 79999999999999999999753
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=81.29 E-value=1.3 Score=43.14 Aligned_cols=30 Identities=37% Similarity=0.490 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 33 vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~ 64 (281)
T 3ppi_A 33 AIVSGGAGGLGEATVRRLHADGLGVVIADLAA 64 (281)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence 888895 789999999999999999998853
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=81.25 E-value=2.1 Score=41.63 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 30 ~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~ 61 (277)
T 4fc7_A 30 AFITGGGSGIGFRIAEIFMRHGCHTVIASRSL 61 (277)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 888895 689999999999999999999864
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.23 E-value=1.3 Score=42.93 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=27.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
++|.|| |+|..+|..|+++|.+|.+++|...
T Consensus 14 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~ 46 (271)
T 3tzq_B 14 AIITGACGGIGLETSRVLARAGARVVLADLPET 46 (271)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 788885 6899999999999999999998753
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=81.11 E-value=0.58 Score=49.73 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=28.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
--|||+|+| .|..+|..|...|++|+|||+.+
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 359999966 79999999999999999999875
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=81.01 E-value=1.4 Score=41.86 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=27.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|.|| |+|..+|..|+++|++|.+++|...
T Consensus 10 vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 42 (241)
T 1dhr_A 10 VLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 42 (241)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred EEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence 888894 6899999999999999999998764
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=80.59 E-value=1.5 Score=41.99 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 9 vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~ 40 (247)
T 3rwb_A 9 ALVTGAAQGIGKAIAARLAADGATVIVSDINA 40 (247)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 788885 689999999999999999998764
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=80.56 E-value=1.4 Score=42.17 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=27.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 12 vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~ 43 (261)
T 3n74_A 12 ALITGAGSGFGEGMAKRFAKGGAKVVIVDRDK 43 (261)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence 888895 689999999999999999999864
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.54 E-value=1.4 Score=41.93 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 12 vlITGas~giG~~~a~~l~~~G~~V~~~~r~~ 43 (253)
T 3qiv_A 12 GIVTGSGGGIGQAYAEALAREGAAVVVADINA 43 (253)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence 788894 689999999999999999999864
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=80.49 E-value=1.4 Score=42.33 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 11 ~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~ 42 (255)
T 4eso_A 11 AIVIGGTHGMGLATVRRLVEGGAEVLLTGRNE 42 (255)
T ss_dssp EEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 788894 789999999999999999999863
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=80.45 E-value=1.5 Score=42.70 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=28.2
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
++|.|| |+|..+|..|+++|.+|.+++|....
T Consensus 9 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~ 42 (274)
T 3e03_A 9 LFITGASRGIGLAIALRAARDGANVAIAAKSAVA 42 (274)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSC
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeccchh
Confidence 788894 78999999999999999999987643
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=80.43 E-value=1.5 Score=41.70 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=27.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|.|| |+|..+|..|+++|++|.+++|...
T Consensus 4 vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~ 36 (257)
T 1fjh_A 4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 788884 6899999999999999999998753
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=80.40 E-value=1.5 Score=41.28 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=26.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 5 vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (235)
T 3l77_A 5 AVITGASRGIGEAIARALARDGYALALGARSV 36 (235)
T ss_dssp EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 788894 689999999999999999999864
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.38 E-value=1.4 Score=43.31 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=26.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|-|| |+|..+|..|++.|.+|++.+|..
T Consensus 32 alVTGas~GIG~aiA~~la~~Ga~V~i~~r~~ 63 (273)
T 4fgs_A 32 AVITGATSGIGLAAAKRFVAEGARVFITGRRK 63 (273)
T ss_dssp EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 677785 789999999999999999999864
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.33 E-value=1.2 Score=42.81 Aligned_cols=30 Identities=33% Similarity=0.653 Sum_probs=26.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 10 ~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~ 41 (250)
T 3nyw_A 10 AIITGASQGIGAVIAAGLATDGYRVVLIARSK 41 (250)
T ss_dssp EEEESTTSHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 788884 689999999999999999999864
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.26 E-value=1.5 Score=42.64 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=27.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|.|| |+|..+|..|+++|.+|.+++|...
T Consensus 16 vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 48 (278)
T 3sx2_A 16 AFITGAARGQGRAHAVRLAADGADIIAVDLCDQ 48 (278)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred EEEECCCChHHHHHHHHHHHCCCeEEEEecccc
Confidence 888895 6899999999999999999998753
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.24 E-value=1.3 Score=41.75 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=27.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|.|| |+|..+|..|+++|++|.+++|...
T Consensus 6 vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~ 38 (236)
T 1ooe_A 6 VIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 38 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 788894 6899999999999999999998764
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=80.22 E-value=1.2 Score=43.38 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=27.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
++|-|| |+|.++|..|+++|.+|++.+|...
T Consensus 14 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~ 46 (261)
T 4h15_A 14 ALITAGTKGAGAATVSLFLELGAQVLTTARARP 46 (261)
T ss_dssp EEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred EEEeccCcHHHHHHHHHHHHcCCEEEEEECCch
Confidence 566684 7899999999999999999998754
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=80.13 E-value=1.2 Score=43.07 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=27.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 30 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~ 61 (260)
T 3gem_A 30 ILITGASQRVGLHCALRLLEHGHRVIISYRTE 61 (260)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 788884 689999999999999999999875
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=80.12 E-value=1.5 Score=42.78 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=27.3
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|+|+| ||+|.++|..|++.|.+|.+++|..
T Consensus 121 ~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 121 RILLIGAGGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence 499999 6789999999999999999998753
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=80.05 E-value=1.6 Score=41.32 Aligned_cols=30 Identities=50% Similarity=0.719 Sum_probs=26.9
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|++|.+++|..
T Consensus 5 vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~ 36 (239)
T 2ekp_A 5 ALVTGGSRGIGRAIAEALVARGYRVAIASRNP 36 (239)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 788894 689999999999999999999864
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=80.03 E-value=1.2 Score=43.29 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=27.1
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
|+|.|| |+|..+|..|+++|.+|.+++|....
T Consensus 17 vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~ 50 (269)
T 3vtz_A 17 AIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKS 50 (269)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 788884 68999999999999999999987643
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=80.01 E-value=1.5 Score=43.60 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=27.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC--cEEEEccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGL--RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~Gl--rVlLIEr~~ 142 (549)
.-|.|+|+| +|.++|..|++.|+ +|.++|+..
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 459999965 79999999999999 999999863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 549 | ||||
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 7e-04 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 8e-04 | |
| d1y0pa2 | 308 | c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( | 9e-04 | |
| d1k0ia1 | 292 | c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr | 0.001 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 0.002 | |
| d1d4ca2 | 322 | c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 ( | 0.002 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 0.003 | |
| d1qo8a2 | 317 | c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 ( | 0.003 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 0.003 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 0.004 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 0.004 |
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 7e-04
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 5/112 (4%)
Query: 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELL----ELVE 162
V ++D +V G G+ G+ A + G R A+VE + L G K+++ E
Sbjct: 1 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSE 60
Query: 163 SGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKR 214
D + KFN + + + + IEI++
Sbjct: 61 FMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH 112
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 38.9 bits (89), Expect = 8e-04
Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 14/153 (9%)
Query: 113 VIVCGGTLGIFIATALSFKGLRVAIVERNT--LKGREQEWNISRKELLELVESGILVEDD 170
+V G G+ A L G+ V + ER+ L G + + + L+E G+ ++
Sbjct: 8 AVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSI 67
Query: 171 IDEATATKFNPNRCGFE---GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYS 227
+++ ++ G + ++ +L +
Sbjct: 68 SVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHT---------SKC 118
Query: 228 VSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260
+ + + ++G ++ +I A G
Sbjct: 119 LVGLSQDSETVQMRFSDGTKAEANWVIGADGGA 151
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 39.2 bits (90), Expect = 9e-04
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 100 QSDLSDKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
Q+ L+ T DV+V G G G A + + G +V ++E+ + G
Sbjct: 6 QAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG 52
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.8 bits (89), Expect = 0.001
Identities = 23/181 (12%), Positives = 45/181 (24%), Gaps = 9/181 (4%)
Query: 113 VIVCGGTLGIFIATALSFKGLRVAIVERNTL-----KGREQEWNISRKELLELVESGILV 167
I+ G G+ + L G+ I+ER T + R +LL +
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRM 65
Query: 168 EDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGY 226
D + + ++ + + + G +++
Sbjct: 66 ARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAA 125
Query: 227 SVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSC 283
V + L I G + I + R G + G
Sbjct: 126 EVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERMQHGRLFLAGDA 185
Query: 284 A 284
A
Sbjct: 186 A 186
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (86), Expect = 0.002
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
+DVIV G G ++ LS G +V +++ G
Sbjct: 6 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 41
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Score = 37.7 bits (86), Expect = 0.002
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG--------REQEWNISRKELLEL 160
T DV++ G G+ A + G +V ++E+ + G + L +
Sbjct: 23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGI 82
Query: 161 VESGILVEDDIDEATATKFNPNRCGF 186
+ ++ DD + +P
Sbjct: 83 EDKKQIMIDDTMKGGRNINDPELVKV 108
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 37.6 bits (86), Expect = 0.003
Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 13/165 (7%)
Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN---------TLKGREQEWNISRKELLE 159
+ I+ G G G+F A L+ G V + + + G N+
Sbjct: 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHY 63
Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
L ++ V+ + T F L +++E++K G
Sbjct: 64 LSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYG 123
Query: 220 GVIFEGYSVSSICTYENAAVL---LLAEGKILSSHLIIDAMGNFS 261
I VS + +N + L +I A G S
Sbjct: 124 AKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS 168
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 37.6 bits (86), Expect = 0.003
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
T V+V G G+ G + A G V +V++ G
Sbjct: 19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG 55
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 36.9 bits (84), Expect = 0.003
Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 14/165 (8%)
Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN------TLKGREQEWNISRKELLELVES 163
+DVIV G G G+ A + +G V ++++ N++ + L+ +
Sbjct: 3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVK 62
Query: 164 GILVEDDIDEATATKFNPN--RCGFEGKGEIWVED----ILNLGVSPAKLIEIVKKRFIS 217
I + + FN FE G E+ + + +++ + R
Sbjct: 63 HIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKD 122
Query: 218 LGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFS 261
LG I V +I ++L G++L ++ ++ A+G S
Sbjct: 123 LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 167
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.5 bits (85), Expect = 0.004
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
+DVIV G G ++ +S G +V ++RN G
Sbjct: 6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG 42
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 37.0 bits (84), Expect = 0.004
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVE 162
+D+IV G G+ G+ A + +VA+VE++ L G + +K +
Sbjct: 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAAS 55
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 99.81 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 99.76 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 99.7 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 99.6 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.51 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 99.5 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.46 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.41 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 99.27 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.18 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.12 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.04 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 98.95 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.94 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.9 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.8 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.72 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.64 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.63 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.62 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.59 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.56 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.54 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.5 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.48 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.46 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.42 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.42 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.41 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.32 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.31 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.3 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.26 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.25 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.24 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.23 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.19 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.1 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.1 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.09 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.06 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.06 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.05 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.04 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.03 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.03 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.02 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.01 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 97.99 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 97.98 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 97.96 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 97.95 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.91 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 97.9 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 97.87 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 97.85 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 97.85 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 97.83 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 97.83 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 97.78 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 97.77 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 97.76 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 97.74 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.65 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.63 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 97.57 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 97.57 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 97.56 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.48 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.46 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.45 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 97.44 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.35 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.33 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.28 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.14 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 97.1 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 97.06 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 97.03 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.97 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 96.87 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 96.82 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 96.72 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.59 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 96.29 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 96.02 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 95.85 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 95.13 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 94.71 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.59 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.39 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.06 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.02 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.58 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 93.47 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.26 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 93.06 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 92.9 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.38 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 91.35 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 90.94 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 90.4 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.88 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 89.86 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 88.34 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 87.98 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 87.7 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 87.69 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 87.51 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 87.47 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 87.45 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 87.38 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 87.16 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 86.98 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 86.46 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 86.26 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 85.94 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 85.87 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 85.63 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 85.5 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 85.39 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 84.93 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 84.92 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 84.76 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 84.73 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 84.65 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 84.65 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 84.53 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 84.52 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 84.43 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 84.08 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 84.02 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 83.9 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 83.77 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 83.68 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 83.63 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 83.5 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 83.44 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 83.39 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 83.35 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 83.34 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 83.21 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 83.02 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 82.89 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 82.82 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 82.68 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 82.54 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 82.46 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 82.37 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 82.32 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 82.31 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 82.24 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 82.17 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 81.86 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 81.7 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 81.67 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 81.51 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 81.47 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 81.45 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 81.29 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 81.26 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 81.2 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 81.2 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 81.06 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 81.03 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 80.98 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 80.78 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 80.76 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.68 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 80.6 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 80.6 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 80.52 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 80.48 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 80.26 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 80.25 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 80.08 |
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=99.81 E-value=1.1e-20 Score=191.61 Aligned_cols=279 Identities=13% Similarity=0.066 Sum_probs=142.9
Q ss_pred cccEEEEcch-HHHHHHHHHH-----hCCCcEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCccc-----chhhhhh
Q 008915 110 TFDVIVCGGT-LGIFIATALS-----FKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDD-----IDEATAT 177 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA-----r~GlrVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~e-----ie~~i~~ 177 (549)
.|||+||||| +|+++|..|| ++|++|+||||.+.+.. .+...|++.+++.|+++|++++.. +......
T Consensus 7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~~~~~~~ 86 (360)
T d1pn0a1 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY 86 (360)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChHHHHhhcCCcceeEEE
Confidence 6999999975 6999999997 57999999999987764 456789999999999999975311 0000000
Q ss_pred -ccCCCcccccCCcc--cc-ccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEECCEEEEEEcCCcEEEcCE
Q 008915 178 -KFNPNRCGFEGKGE--IW-VEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (549)
Q Consensus 178 -~~~~~~i~f~~~~~--l~-~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~Arl 252 (549)
.............. .. ........+.+..+...|.+.+.+.+ ......+.+ .+..+.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~~d~ 151 (360)
T d1pn0a1 87 NPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPL---------------IPEKMEIDS 151 (360)
T ss_dssp EECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSE---------------EEEEEEECG
T ss_pred ecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEec---------------ccceEEeeE
Confidence 00001110000000 00 00011234677888888887775532 221111111 123578899
Q ss_pred EEEccCCChHHHHHhcCCCCCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEE
Q 008915 253 IIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (549)
Q Consensus 253 VI~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~ 332 (549)
+++|||.+|+++............. . ...+...+. ...+.+. ..+ .....| .+|......+.......
T Consensus 152 ~~~~dg~~s~v~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~---~~~----~~~~~~-~~~~~~~~~~~~~~~~~ 219 (360)
T d1pn0a1 152 SKAEDPEAYPVTMTLRYMSEDESTP-L--QFGHKTENG-LFRSNLQ---TQE----EEDANY-RLPEGKEAGEIETVHCK 219 (360)
T ss_dssp GGTTCTTCCCEEEEEEECCGGGSCC-C--TTCCCCCSS-SCCCHHH---HHH----HHHTSC-CCSTTCCTTCEEEEEEE
T ss_pred EEEeecCCcceEEEEEEeecccccc-e--eeeeecCCC-ceEEeee---cCC----ccccee-ecCcccchhhHHHHHHH
Confidence 9999999998875432111000000 0 000000000 0000000 000 001112 23332211000110000
Q ss_pred ccCCCCCcccHHHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCc-cCCcEEEeCCCCCCCCCCCCCchhhH
Q 008915 333 YIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSL 411 (549)
Q Consensus 333 ~~~~~~~~~~L~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~-~~~rvlLVGDAA~~v~Pltg~G~g~~ 411 (549)
+............ ... +.......++ ..+|++|+|||||.++|++|||+|++
T Consensus 220 ~~~~~~~~~~~~~----~~~-----------------------~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~a 272 (360)
T d1pn0a1 220 YVIGCDGGHSWVR----RTL-----------------------GFEMIVTEKFSKDERVFIAGDACHTHSPKAGQGMNTS 272 (360)
T ss_dssp EEEECCCTTCHHH----HHH-----------------------TCCCEECSCSEETTTEEECGGGTEECCSTTCCHHHHH
T ss_pred hhcCcccccchhh----ccc-----------------------ccccchhhheeecCcEEEccCcccccccccCCCCccc
Confidence 0000000000000 000 0000011123 35899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhhhhhcC
Q 008915 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLG 446 (549)
Q Consensus 412 lrd~~~La~~i~~Al~~g~l~~~~l~~L~~Y~~l~ 446 (549)
++|+..|++.|..+++... ..+.|+.|++.+
T Consensus 273 l~Da~~La~~l~~~~~~~~----~~~~L~~Y~~~R 303 (360)
T d1pn0a1 273 MMDTYNLGWKLGLVLTGRA----KRDILKTYEEER 303 (360)
T ss_dssp HHHHHHHHHHHHHHHTTCB----CGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHH
Confidence 9999999999988876432 234468999543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.76 E-value=6.7e-18 Score=164.83 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=103.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC-cEEEEccCCCCCC-CccccCCHHHHHHHHHcCCCCcccchhhhhhc-----c-CC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATK-----F-NP 181 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~~~~~-~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~-----~-~~ 181 (549)
+||+||||| +|+++|+.|+++|+ +|+|+||++.++. .+...++++.+..|.++|+++.. ....... + ..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPAL--AATAIPTHELRYIDQS 79 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHH--HHHSEEECEEEEECTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhh--HhhhcccccceeEcCC
Confidence 699999965 69999999999997 8999999987654 34567899999999999986431 1110000 0 01
Q ss_pred Cccc--ccCCccccccccccceeCHHHHHHHHHHHHHh--cCCEEEeCceEEEEEEECCEEEEEEcCC----cEEEcCEE
Q 008915 182 NRCG--FEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS--LGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLI 253 (549)
Q Consensus 182 ~~i~--f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~--~G~~v~~~t~v~~i~~~~dgv~V~~~dG----~~i~ArlV 253 (549)
+... +.. .....................+.....+ .+.++..+++++.+...++++.|.++++ ++++|++|
T Consensus 80 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~v 158 (288)
T d3c96a1 80 GATVWSEPR-GVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVL 158 (288)
T ss_dssp SCEEEEEEC-GGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEE
T ss_pred CCEEEeccc-cccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeecee
Confidence 1100 000 0000000011223334444444444332 4779999999999999999999988764 37999999
Q ss_pred EEccCCChHHHHHh
Q 008915 254 IDAMGNFSPVVKQI 267 (549)
Q Consensus 254 I~ADG~~S~vrrql 267 (549)
|+|||.+|.+++..
T Consensus 159 i~ADG~~S~vr~~~ 172 (288)
T d3c96a1 159 VGADGIHSAVRAHL 172 (288)
T ss_dssp EECCCTTCHHHHHH
T ss_pred eccCCccceeeeee
Confidence 99999999998764
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.70 E-value=5.1e-17 Score=168.59 Aligned_cols=255 Identities=17% Similarity=0.188 Sum_probs=144.9
Q ss_pred CcccEEEEcc-hHHHHHHHHHHh------CCCcEEEEccCCCCCCCcc-c-cCCHHHHHHHHHcCCCCcccchhhhhhc-
Q 008915 109 GTFDVIVCGG-TLGIFIATALSF------KGLRVAIVERNTLKGREQE-W-NISRKELLELVESGILVEDDIDEATATK- 178 (549)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LAr------~GlrVlLIEr~~~~~~~r~-~-~IS~~~l~~L~~lGl~~~~eie~~i~~~- 178 (549)
.+|||||||| |+|+++|+.||+ +|++|+||||+.+++.+.+ . -+++..+..|...........+.....+
T Consensus 31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~ 110 (380)
T d2gmha1 31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDR 110 (380)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecce
Confidence 3699999996 569999999997 8999999999999987632 1 2555555544211000000000000000
Q ss_pred --c--CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEE
Q 008915 179 --F--NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (549)
Q Consensus 179 --~--~~~~i~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI 254 (549)
+ ......+............++.+....++.++.+++...|+++..++.+.++..+++++..... .....+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~-----~~~~~~ 185 (380)
T d2gmha1 111 FGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIA-----TNDVGI 185 (380)
T ss_dssp EEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEE-----ECCEEE
T ss_pred EEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecc-----cccccc
Confidence 0 0000000000111111223567889999999999999999999999999999887776554432 112222
Q ss_pred EccCCChHHHHHhcCCCCCCceeeEEeEeeeccCCCceeeeeecCCcccccCCCCceeEEEEecCCCCCccceEEEEEcc
Q 008915 255 DAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (549)
Q Consensus 255 ~ADG~~S~vrrql~~~~~~~~~~~~vg~~~~g~~~~~~~ei~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~l~~~~ 334 (549)
+.++.. . ...... ... ....| .|..+..
T Consensus 186 ~~~~~~---------------~-----~~~~~~--------------~~~-----~~~~~-v~~~G~~------------ 213 (380)
T d2gmha1 186 QKDGAP---------------K-----TTFERG--------------LEL-----HAKVT-IFAEGCH------------ 213 (380)
T ss_dssp CTTSCE---------------E-----EEEECC--------------CEE-----ECSEE-EECCCTT------------
T ss_pred cccccc---------------c-----cccccc--------------ccc-----cccEE-EEeeeCC------------
Confidence 222110 0 000000 000 01122 3443211
Q ss_pred CCCCCcccH-HHHHHHHHHhCcccccccCCceeEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCchhhHHH
Q 008915 335 DPQAGSPKL-EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTR 413 (549)
Q Consensus 335 ~~~~~~~~L-~~l~~~~~~~lp~~~~~~l~~~~~~r~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pltg~G~g~~lr 413 (549)
..+ +++++.+. ..... .+..| +. ...+...++++||||||+++||+++.|+..++.
T Consensus 214 ------G~l~k~li~~~~----l~~~~--------~~~~G----~~-sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~ 270 (380)
T d2gmha1 214 ------GHLAKQLYKKFD----LRANC--------EPQGG----FQ-SIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMK 270 (380)
T ss_dssp ------CHHHHHHHHHTT----TTTTS--------CCCCG----GG-GCCCCEETTEEECTTTTCCCBTTTTBCHHHHHH
T ss_pred ------CcchHHHHhhhh----hcccc--------ccccc----cc-cccccccCCeeEEeccccccchhhcCCeeeeec
Confidence 112 23333221 00000 00011 11 122567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCChhhhHh-hhhhh
Q 008915 414 HLGRLSTGVYEAVRGDFVDSYSLSL-LNPYM 443 (549)
Q Consensus 414 d~~~La~~i~~Al~~g~l~~~~l~~-L~~Y~ 443 (549)
....+|+.|.+|++.++.+.+.+.. +..|+
T Consensus 271 SG~lAAeai~~al~~~~~~~~~~~~~~~~y~ 301 (380)
T d2gmha1 271 SGTLAAESIFNQLTSENLQSKTIGLHVTEYE 301 (380)
T ss_dssp HHHHHHHHHHHHHTCCCCCCSSSSCCCTHHH
T ss_pred cHHHHHHHHHHHHHcCCcccchhhhhhhhHH
Confidence 9888899999999999877766532 45566
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.60 E-value=2.4e-16 Score=155.86 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=106.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC---CCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~---~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
++||+||||| +|+++|+.|+++|++|+||||.+.+ +..+...|++..++.|+++|+++. +.... .......+.
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~--l~~~~-~~~~~~~~~ 78 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRR--MARDG-LVHEGVEIA 78 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHH--HHHHC-EEESCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHH--HHhhc-ccccceEEE
Confidence 5799999965 5999999999999999999998743 234556799999999999999853 22110 011110111
Q ss_pred ccCC-----ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEE-EEEEECCEEEEEEc-CCc--EEEcCEEEEc
Q 008915 186 FEGK-----GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVS-SICTYENAAVLLLA-EGK--ILSSHLIIDA 256 (549)
Q Consensus 186 f~~~-----~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~-~i~~~~dgv~V~~~-dG~--~i~ArlVI~A 256 (549)
.... ..........+.+++..+.+.|.+.+.+.+..+....+.+ .+..+++++.|++. +|+ +++||+||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgA 158 (292)
T d1k0ia1 79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC 158 (292)
T ss_dssp ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred ecccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEEC
Confidence 0000 0000111234568899999999999998888666665554 44455667777664 554 6899999999
Q ss_pred cCCChHHHHHh
Q 008915 257 MGNFSPVVKQI 267 (549)
Q Consensus 257 DG~~S~vrrql 267 (549)
||.+|++|+++
T Consensus 159 DG~~S~vR~~i 169 (292)
T d1k0ia1 159 DGFHGISRQSI 169 (292)
T ss_dssp CCTTCSTGGGS
T ss_pred CCCCCccccee
Confidence 99999998753
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.51 E-value=4.7e-14 Score=135.96 Aligned_cols=151 Identities=23% Similarity=0.288 Sum_probs=90.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC----cc--ccCC-HHHHHHHHHcCCCCcccchhhhhhccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE----QE--WNIS-RKELLELVESGILVEDDIDEATATKFNP 181 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~----r~--~~IS-~~~l~~L~~lGl~~~~eie~~i~~~~~~ 181 (549)
+||||||||| +|+++|+.|+++|++|+||||++.++.. .. .++. ......+................ .+..
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFS-IFNN 80 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHH-HSCH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhh-hhhh
Confidence 6999999965 6999999999999999999998765421 00 0100 00111111110000000000000 0000
Q ss_pred Cc----ccccCCcccccc---ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEE
Q 008915 182 NR----CGFEGKGEIWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLI 253 (549)
Q Consensus 182 ~~----i~f~~~~~l~~~---~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlV 253 (549)
.. +...+ ...... ...........+.+.|.+++++.|++++++++|+++..+++.+. |.+++|++++||.|
T Consensus 81 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~v 159 (251)
T d2i0za1 81 EDIITFFENLG-VKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHV 159 (251)
T ss_dssp HHHHHHHHHTT-CCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCE
T ss_pred HHHHHHHHhcC-CccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeE
Confidence 00 00000 000000 00111234466888899999999999999999999999888765 77788999999999
Q ss_pred EEccCCChH
Q 008915 254 IDAMGNFSP 262 (549)
Q Consensus 254 I~ADG~~S~ 262 (549)
|.|+|..|.
T Consensus 160 I~AtGg~S~ 168 (251)
T d2i0za1 160 VIAVGGKSV 168 (251)
T ss_dssp EECCCCSSS
T ss_pred EEccCCccc
Confidence 999999984
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.50 E-value=1.5e-13 Score=132.77 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=102.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC--CccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR--EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~--~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.-.|+||||| +|+++|..|+++|++|+|+||++.+.. .....+++.....|.++|+..+.. ......+ ....+
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~--~~~~~~~--~~~~~ 79 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSI--SVPSSSM--EYVDA 79 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGT--CBCCCEE--EEEET
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhh--ccCCCcc--eeEec
Confidence 3469999965 699999999999999999999876543 234568899999999999864311 0000010 00111
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChHHHHH
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~vrrq 266 (549)
....................+...+.. ...+..++.+++++++..++++++|+++||.+++++++|+|||.+|.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~~r~~ 157 (265)
T d2voua1 80 LTGERVGSVPADWRFTSYDSIYGGLYE--LFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKR 157 (265)
T ss_dssp TTCCEEEEEECCCCEEEHHHHHHHHHH--HHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHHHHH
T ss_pred cCCceecccccccccchhHHHHHHHHH--hcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccccccccc
Confidence 111111110000111222223222222 234668999999999999999999999999999999999999999999987
Q ss_pred hc
Q 008915 267 IR 268 (549)
Q Consensus 267 l~ 268 (549)
+.
T Consensus 158 ~~ 159 (265)
T d2voua1 158 LL 159 (265)
T ss_dssp HH
T ss_pred cc
Confidence 64
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.46 E-value=2.6e-13 Score=132.97 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=60.2
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH-HHHHhcC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRS 269 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~-vrrql~~ 269 (549)
..+++..+...|.+.+++.|++++++++|+++..+++++.|.+++| +++|+.||.|.|.+|+ +.+.+++
T Consensus 145 g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~~l~~~lg~ 214 (281)
T d2gf3a1 145 GVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLNL 214 (281)
T ss_dssp EEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGTE
T ss_pred ccccccccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcchhhHHhcCC
Confidence 3578999999999999999999999999999999999999998766 6999999999999987 4445543
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.41 E-value=5.9e-13 Score=129.79 Aligned_cols=70 Identities=23% Similarity=0.197 Sum_probs=62.1
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH-HHHHhcCCC
Q 008915 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSGR 271 (549)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~-vrrql~~~~ 271 (549)
.+++..+.+.|.+.+++.|++++++++|+++..+++.+.|++++| +++|+.||.|.|.+|+ +.+.+++..
T Consensus 147 ~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~ 217 (276)
T d1ryia1 147 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNN 217 (276)
T ss_dssp BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCC
T ss_pred eeecccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCc
Confidence 579999999999999999999999999999998888888988666 6999999999999997 777777543
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=99.27 E-value=4.3e-11 Score=118.25 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=61.2
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCChH-HHHHhcCCCC
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIRSGRK 272 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S~-vrrql~~~~~ 272 (549)
..+++..+...|.+++.+.|++++++++|+++..++++++ |.+++| +++|+.||.|.|.+|+ +.+.++...+
T Consensus 143 g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~lP 216 (305)
T d1pj5a2 143 GLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAVP 216 (305)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCCC
T ss_pred cccchhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCCccc
Confidence 3579999999999999999999999999999999999876 666555 7999999999999998 6666655433
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.18 E-value=9.8e-12 Score=120.36 Aligned_cols=151 Identities=19% Similarity=0.169 Sum_probs=84.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCC------ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRKELLELVESGILVEDDIDEATATKFNPN 182 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~------r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~ 182 (549)
.||||||||| +|+++|+.|+++|++|+||||.+.++.+ ...+++.........+.. ....++..+.......
T Consensus 4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 82 (253)
T d2gqfa1 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ-NPHFVKSALARYTNWD 82 (253)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECS-CTTSTHHHHHHSCHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhcc-ChHHHHHHhhhhcccc
Confidence 6999999965 6999999999999999999999876521 000111000000000000 0000001000000000
Q ss_pred ccccc-C-Ccccccccc--ccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE---EEEcCCcEEEcCEEEE
Q 008915 183 RCGFE-G-KGEIWVEDI--LNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLIID 255 (549)
Q Consensus 183 ~i~f~-~-~~~l~~~~~--l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~---V~~~dG~~i~ArlVI~ 255 (549)
.+.+. . ...+..+.. ....-....+.+.|.+.+++.|++++.+++|+++...+++.. +...++.+++||.||.
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIi 162 (253)
T d2gqfa1 83 FISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIV 162 (253)
T ss_dssp HHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEE
T ss_pred hhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEE
Confidence 00000 0 000000000 000112356788899999999999999999999988766421 2223677899999999
Q ss_pred ccCCCh
Q 008915 256 AMGNFS 261 (549)
Q Consensus 256 ADG~~S 261 (549)
|+|..|
T Consensus 163 AtGG~S 168 (253)
T d2gqfa1 163 ATGGLS 168 (253)
T ss_dssp CCCCSS
T ss_pred cCCccc
Confidence 999887
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.12 E-value=4.3e-10 Score=111.23 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE--EEE--cCCc--EEEcCEEEEccCCChHHH
Q 008915 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLL--AEGK--ILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~~--~dG~--~i~ArlVI~ADG~~S~vr 264 (549)
...+.+.+.+++.+.|++++++++++++..++++.+ |.+ .++. +|+||-||.|+|..+...
T Consensus 144 ~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~ 210 (308)
T d1y0pa2 144 GAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNN 210 (308)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCH
T ss_pred HHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCcccccH
Confidence 345778888899899999999999999988776422 333 2332 799999999999887543
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.04 E-value=1.7e-09 Score=107.86 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE----EEEEEcCCc--EEEcCEEEEccCCChHHH
Q 008915 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK--ILSSHLIIDAMGNFSPVV 264 (549)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg----v~V~~~dG~--~i~ArlVI~ADG~~S~vr 264 (549)
...+.+.|.+++.+.|++++.+++++++..++++ +.+.-.++. .|+||.||.|+|..+...
T Consensus 151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~ 217 (322)
T d1d4ca2 151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNN 217 (322)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCH
T ss_pred hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcccCH
Confidence 4567788899999999999999999999886663 334333333 699999999999877533
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.94 E-value=1.6e-09 Score=107.71 Aligned_cols=133 Identities=20% Similarity=0.229 Sum_probs=85.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
++|||||||| .|+++|..|.++|++|+|+||++.++. .|...+ .-|+... ... ..+ .+..
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGG--tW~~n~-------ypg~~~d--~~~---~~~-----~~s~ 67 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG--VWYWNR-------YPGARCD--IES---IEY-----CYSF 67 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHCC-------CTTCBCS--SCT---TTS-----SCCS
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccc--ccccCC-------CCCceec--ccc---ccc-----cccc
Confidence 7999999976 599999999999999999999886552 231100 0011000 000 000 0000
Q ss_pred Ccccccc-ccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEEC--CEEEEEEcCCcEEEcCEEEEccCCCh
Q 008915 189 KGEIWVE-DILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE--NAAVLLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 189 ~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~--dgv~V~~~dG~~i~ArlVI~ADG~~S 261 (549)
......+ .....-.....+.+.|.+.+.+.+. .|+.+|+|+++..++ +.+.|++.++.+++||.||-|+|..|
T Consensus 68 ~~~~~~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls 145 (298)
T d1w4xa1 68 SEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS 145 (298)
T ss_dssp CHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred cccccCCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccc
Confidence 0000000 0000112345677778888877776 699999999998654 46899998999999999999999765
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.90 E-value=7.9e-09 Score=102.82 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE----EEEEEcCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg----v~V~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+.+.|.+++++.|++++.+++++++..++++ +++...++. .+.||-||-|+|..+.
T Consensus 148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~ 211 (317)
T d1qo8a2 148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 211 (317)
T ss_dssp HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecccccc
Confidence 357788999999999999999999999887664 233333443 6899999999998764
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.80 E-value=3.4e-08 Score=98.27 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-EEE---cCCc--EEEcCEEEEccCCCh
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEGK--ILSSHLIIDAMGNFS 261 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~---~dG~--~i~ArlVI~ADG~~S 261 (549)
..+...|.+++.+.|++++.+++++++..+++.+. +.+ .+|+ ++.|+-||-|+|..+
T Consensus 158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~ 220 (336)
T d2bs2a2 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (336)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccc
Confidence 45777888888889999999999999999888654 222 3565 699999999999876
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.72 E-value=4.5e-08 Score=97.80 Aligned_cols=60 Identities=12% Similarity=-0.057 Sum_probs=50.3
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC---c---EEEcCEEEEccCCCh
Q 008915 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---K---ILSSHLIIDAMGNFS 261 (549)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG---~---~i~ArlVI~ADG~~S 261 (549)
+.+..+.+.|.+.+...+..++.+|+|++++.+++.+.|+++++ . +..+|.||.|+|..|
T Consensus 110 ~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s 175 (335)
T d2gv8a1 110 PHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE 175 (335)
T ss_dssp CBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred CchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccc
Confidence 45677888888888777789999999999999999998887642 2 567999999999988
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.64 E-value=1.6e-07 Score=88.99 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=70.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC-CCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~-~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.||||||||| +|+.+|+++||.|+||+||+++... +...+ |-+ .|.. ....+..+...
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~c-np~---------~gg~----~kg~l~reid~------ 61 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFL-PPK---------PPFP----PGSLLERAYDP------ 61 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSS-CCC---------SCCC----TTCHHHHHCCT------
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccccc-CCc---------cccC----CCcceeeeeec------
Confidence 5999999965 7999999999999999999976321 10000 000 0000 00111111100
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEECCEEE-EEEcCCcEEEcCEEEEccCCCh
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFS 261 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~dG~~i~ArlVI~ADG~~S 261 (549)
. +..+ ..+...+.+.+... +.+++. .+|+++..+++.+. |.+.+|.+++|+-||-|+|.+.
T Consensus 62 -k---------G~av--~a~raQ~k~~l~~~~nL~i~q-~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 62 -K---------DERV--WAFHARAKYLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp -T---------CCCH--HHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred -c---------chhh--hhHHHHHHHHHhhhcCHHHHh-ccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence 0 0000 11222223333333 556665 46888888888765 7888899999999999999875
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.63 E-value=4.6e-08 Score=95.29 Aligned_cols=134 Identities=15% Similarity=0.244 Sum_probs=79.5
Q ss_pred cccEEEEcch-HHHHHHHHHHh-CCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchh---hhhhccCCCcc
Q 008915 110 TFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDE---ATATKFNPNRC 184 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr-~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~---~i~~~~~~~~i 184 (549)
++|||||||| +|+++|+.||+ .|++|+||||++.++.. .|+- -.+++...+.. .+..++. +
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~-~~~~----------g~~~~~~~~~~~~~~~~~~~g---~ 98 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG-AWLG----------GQLFSAMIVRKPAHLFLDEIG---V 98 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT-TTCC----------STTCCCEEEETTTHHHHHHHT---C
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCc-eeec----------CEEcCHHHHhhhHHHHHHHcC---C
Confidence 6999999965 58899999997 59999999999766521 1110 00111000000 0000110 1
Q ss_pred cccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE-E--EEc------------CCcEEE
Q 008915 185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-L--LLA------------EGKILS 249 (549)
Q Consensus 185 ~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V--~~~------------dG~~i~ 249 (549)
.|.... ...........++.++.+.+...+..++.++.+.++...++.+. + ... ++.+++
T Consensus 99 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~ 173 (278)
T d1rp0a1 99 AYDEQD-----TYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVME 173 (278)
T ss_dssp CCEECS-----SEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEE
T ss_pred ceecCC-----ccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeec
Confidence 111000 00111223456777777777777889999999999988877653 1 110 134799
Q ss_pred cCEEEEccCCChH
Q 008915 250 SHLIIDAMGNFSP 262 (549)
Q Consensus 250 ArlVI~ADG~~S~ 262 (549)
|+++|+|+|...+
T Consensus 174 a~~vv~a~G~~~~ 186 (278)
T d1rp0a1 174 AKIVVSSCGHDGP 186 (278)
T ss_dssp EEEEEECCCSSST
T ss_pred cceEEECcCCCcc
Confidence 9999999997643
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=1.1e-07 Score=94.26 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE--EEE--cCCc--EEEcCEEEEccCCChH
Q 008915 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLL--AEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~~--~dG~--~i~ArlVI~ADG~~S~ 262 (549)
+...+.+.++..+++++++++++++..+++.+. +.. .+|+ .+.|+-||-|+|..+.
T Consensus 137 ~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~ 198 (311)
T d1kf6a2 137 LHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 198 (311)
T ss_dssp HHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred HHhHHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccc
Confidence 333444444445789999999999998887654 222 3565 5799999999998863
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=2.9e-07 Score=77.92 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=72.7
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~~ 191 (549)
|+||||| .|+-+|..|++.|.+|.|+|+.+.... .
T Consensus 24 vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~------------------------------------------~-- 59 (116)
T d1gesa2 24 VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP------------------------------------------S-- 59 (116)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------T--
T ss_pred EEEECCChhhHHHHHHhhccccEEEEEeecchhhh------------------------------------------h--
Confidence 8999976 599999999999999999998752110 0
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEEcCEEEEccC
Q 008915 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~ArlVI~ADG 258 (549)
.| ..+-+.+.+.+++.|++++.++.++.+..+++ .++|++++|+++.+++||-|.|
T Consensus 60 ----------~d-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 60 ----------FD-PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp ----------SC-HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred ----------cc-hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 01 12345666777778999999999999988765 4778898999999999999987
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=2.4e-08 Score=92.49 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=33.6
Q ss_pred CCcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 108 ~~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+.+|||||||+|+ |+++|+.||++|+||+||||+..++
T Consensus 3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G 41 (297)
T d2bcgg1 3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 41 (297)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence 3489999999775 8899999999999999999998664
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=2.6e-07 Score=92.13 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE-EE--E--EEcCCc--EEEcCEEEEccCCChH
Q 008915 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV--L--LLAEGK--ILSSHLIIDAMGNFSP 262 (549)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~--V--~~~dG~--~i~ArlVI~ADG~~S~ 262 (549)
..+...|.+++...+++++..+.++++..++++ +. + ...+|+ .+.|+.||-|+|....
T Consensus 143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~ 207 (330)
T d1neka2 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR 207 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGG
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccc
Confidence 356778888888889999999999998776553 21 1 123455 6899999999998764
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=6.4e-07 Score=77.97 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=74.1
Q ss_pred cEEEEcch-HHHHHHHHHHh----CCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 008915 112 DVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr----~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f 186 (549)
.++||||| .|+-+|..|++ .|.+|.+||+.+.+- .
T Consensus 39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l---------------------~------------------- 78 (137)
T d1m6ia2 39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM---------------------G------------------- 78 (137)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT---------------------T-------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC---------------------c-------------------
Confidence 48999976 58888888863 599999999865311 0
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
. . ++ ..+-+.+.+.+.+.|++++.++.++++..+++.+.|++++|+++.||+||-|.|.
T Consensus 79 ----~-----~----~~-~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 79 ----K-----I----LP-EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp ----T-----T----SC-HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred ----c-----c----CC-HHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence 0 0 01 2344567778888999999999999999999999999999999999999999984
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.4e-07 Score=90.82 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=38.7
Q ss_pred HhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 216 ISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 216 ~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
.+.|++++.+++|++|..+++++.|++.||++++||.||.|..
T Consensus 218 ~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p 260 (383)
T d2v5za1 218 DLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIP 260 (383)
T ss_dssp HHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSC
T ss_pred HHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCC
Confidence 4458899999999999999999999999999999999998864
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=2.7e-07 Score=90.68 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=31.0
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+|||||||+| +|+++|+.+++.| +|+||||.+..+
T Consensus 6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~g 42 (305)
T d1chua2 6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTE 42 (305)
T ss_dssp EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC
T ss_pred ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCC
Confidence 36999999965 6999999988888 999999998654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.42 E-value=9.3e-07 Score=75.35 Aligned_cols=89 Identities=21% Similarity=0.379 Sum_probs=68.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| +|+-+|..|+++|.+|.|+|+.+.+- . .
T Consensus 32 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------~------------- 68 (121)
T d1d7ya2 32 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM---------------------S---------R------------- 68 (121)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT---------------------T---------T-------------
T ss_pred eEEEECcchhHHHHHHHhhcccceEEEEeeccccc---------------------c---------c-------------
Confidence 59999976 59999999999999999999875311 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
. ++ ..+.+.+.+.+++.|++++.+++++++. ++ .|.++||+++.||+||-|.|
T Consensus 69 ~----------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~~~--~~--~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 69 A----------AP-ATLADFVARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp T----------SC-HHHHHHHHHHHHTTTCEEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSC
T ss_pred c----------CC-HHHHHHHHHHHHHCCcEEEeCCEEEEEe--CC--EEEECCCCEEECCEEEEeeC
Confidence 0 01 1344566677788899999999998864 33 35678999999999999987
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.42 E-value=1.1e-06 Score=76.22 Aligned_cols=93 Identities=17% Similarity=0.288 Sum_probs=70.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| +|+-+|..|++.|.+|.|+|+.+.+-.. .
T Consensus 37 ~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~-----------------~------------------------- 74 (133)
T d1q1ra2 37 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER-----------------V------------------------- 74 (133)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-----------------T-------------------------
T ss_pred EEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc-----------------c-------------------------
Confidence 49999976 5999999999999999999987631100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCE--E-EEEEcCCcEEEcCEEEEccC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--A-VLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v-~V~~~dG~~i~ArlVI~ADG 258 (549)
.+ ..+.+.+.+.+++.|++++.+++++.++..++. + .|.++||+++.||+||-|.|
T Consensus 75 -----------~~-~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 75 -----------TA-PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp -----------SC-HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred -----------cc-hhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 00 123345556677889999999999999876543 3 36788999999999999987
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.41 E-value=1.6e-06 Score=73.46 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=73.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.++|+||| .|+=+|..|++.|.+|.++|+....-. .
T Consensus 24 ~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~-------------------------------~------------ 60 (119)
T d3lada2 24 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-------------------------------A------------ 60 (119)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------T------------
T ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC-------------------------------c------------
Confidence 59999977 599999999999999999998753110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC---cEEEcCEEEEccC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMG 258 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG---~~i~ArlVI~ADG 258 (549)
.| ..+.+.+.+.+++.|++++.++++++++.++++++|++.++ +++.++.||-|.|
T Consensus 61 -----------~d-~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 61 -----------VD-EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred -----------cc-chhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 01 12345566677788999999999999999999999888653 4899999999987
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.32 E-value=1.1e-06 Score=82.52 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=31.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
+.+||||||| +|+++|+.|+++|++|+||||...+
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~ 41 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE 41 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 5689999976 5999999999999999999998653
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.31 E-value=4e-06 Score=70.56 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=69.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- . .
T Consensus 24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il---------------------~----------~------------ 60 (117)
T d1ebda2 24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL---------------------S----------G------------ 60 (117)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS---------------------T----------T------------
T ss_pred eEEEECCCccceeeeeeecccccEEEEEEecceec---------------------c----------c------------
Confidence 59999976 59999999999999999999875310 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc-CC--cEEEcCEEEE
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EG--KILSSHLIID 255 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-dG--~~i~ArlVI~ 255 (549)
+|+ .+-+.+.+.+++.|++++.+++++++..+++++.|.+. +| +++.||.||-
T Consensus 61 -----------~d~-~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlv 116 (117)
T d1ebda2 61 -----------FEK-QMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116 (117)
T ss_dssp -----------SCH-HHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEE
T ss_pred -----------ccc-hhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEE
Confidence 011 23455667777889999999999999999999888774 44 4799999884
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.30 E-value=1.1e-06 Score=80.34 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=75.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
++||+||||| +|+.+|..|+|+|++|+|+|+......... + .+... .+.
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~--------------~---------~~~~~---~~~---- 54 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPG--------------G---------QLTTT---TDV---- 54 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTT--------------C---------GGGGC---SEE----
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccc--------------c---------ccccc---hhh----
Confidence 6999999965 699999999999999999998765332110 0 00000 000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCC
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
...+.. ...+....|...+.+++.+.|+++..+ .|++++..++...+.+ +..++.++.++.|.|..
T Consensus 55 ~~~~~~----~~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~-~~~~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 55 ENFPGF----PEGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLFT-DSKAILADAVILAIGAV 120 (192)
T ss_dssp CCSTTC----TTCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred hccccc----cccccchHHHHHHHHHHHhhcceeeee-eEEecccccCcEEecc-cceeeeeeeEEEEeeee
Confidence 000000 011345667777788888889988755 6788877777777765 45578999999998863
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.26 E-value=2.8e-06 Score=72.37 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=67.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+|+||| +|+-+|..|++.|.+|.|+|+.+.+- .
T Consensus 32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l---------------------~----------------------- 67 (123)
T d1nhpa2 32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL---------------------G----------------------- 67 (123)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT---------------------T-----------------------
T ss_pred EEEEECChHHHHHHHHHhhccceEEEEEEecCccc---------------------c-----------------------
Confidence 58999976 59999999999999999999875210 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 256 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~A 256 (549)
. .++ ..+-+.+.+.+++.|++++.+++++++..+ +.+.+.+.||+++.||+||-|
T Consensus 68 -----~----~~d-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~v~~dg~~i~~D~vi~a 122 (123)
T d1nhpa2 68 -----V----YLD-KEFTDVLTEEMEANNITIATGETVERYEGD-GRVQKVVTDKNAYDADLVVVA 122 (123)
T ss_dssp -----T----TCC-HHHHHHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEESSCEEECSEEEEC
T ss_pred -----c----ccc-hhhHHHHHHHhhcCCeEEEeCceEEEEEcC-CCEEEEEeCCCEEECCEEEEE
Confidence 0 001 123455667778889999999999998754 344444568889999999976
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.25 E-value=6e-06 Score=69.72 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=69.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
-|+||||| .|+-+|..|++.|.+|.|+||...+-+ .
T Consensus 24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-------------------------------~------------ 60 (117)
T d1onfa2 24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-------------------------------K------------ 60 (117)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-------------------------------T------------
T ss_pred EEEEECCchHHHHHHHHHHhccccceeeehhccccc-------------------------------c------------
Confidence 49999987 599999999999999999998752100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEE-cCEEEEc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILS-SHLIIDA 256 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~-ArlVI~A 256 (549)
.| ..+-+.+.+.+++.|++++.++++++++..++ .++|++++|+++. +|.||-|
T Consensus 61 -----------~d-~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A 116 (117)
T d1onfa2 61 -----------FD-ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC 116 (117)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred -----------cc-HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence 01 13445667777888999999999999987655 5778899998775 5999876
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=3.2e-06 Score=76.94 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=73.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~ 188 (549)
++||+||||| +|+.+|..|+|.|++|+||||....+... .. ..++ .+ ..|
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~-----------------~~-~~i~-----~~----~~~-- 55 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT-----------------TT-TEVE-----NW----PGD-- 55 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGG-----------------GC-SBCC-----CS----TTC--
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccccccc-----------------cc-chhh-----hh----hcc--
Confidence 5899999975 69999999999999999999876433100 00 0000 00 001
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
+. .+....+.+.+.+.+.+.+.++..+ +|+.+...++..+++.. ..++.++.+|.|.|.
T Consensus 56 ------~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~~-~~~~~~~~viva~G~ 114 (190)
T d1trba1 56 ------PN----DLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNGD-NGEYTCDALIIATGA 114 (190)
T ss_dssp ------CS----SCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEES-SCEEEEEEEEECCCE
T ss_pred ------cc----ccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEEe-eeeEeeeeeeeecce
Confidence 00 1234566677777788888887755 68888877777777763 457899999999884
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.23 E-value=3.9e-06 Score=70.66 Aligned_cols=93 Identities=13% Similarity=0.196 Sum_probs=70.5
Q ss_pred cEEEEcch-HHHHHHHHHH---hCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 112 DVIVCGGT-LGIFIATALS---FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA---r~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.++||||| +|+-+|..|+ +.|.+|.++|+.+..- . .
T Consensus 20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il---------------------~----------~--------- 59 (117)
T d1feca2 20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL---------------------R----------G--------- 59 (117)
T ss_dssp EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS---------------------T----------T---------
T ss_pred eEEEECCChHHHHHHHHhHhhcccccccceeccccccc---------------------c----------c---------
Confidence 59999976 5998887654 4599999999864210 0 0
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEE-EEEEcCCcEEEcCEEEEccCC
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~dG~~i~ArlVI~ADG~ 259 (549)
+|+ .+.+.+.+.+++.|++++.++.++++..+++++ .+.+++|+++.||+||-|.|+
T Consensus 60 --------------~d~-~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 60 --------------FDS-ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp --------------SCH-HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred --------------ccc-hhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence 111 244566677788899999999999998876654 578889999999999999984
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.19 E-value=4.9e-06 Score=71.15 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=73.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.++|+||| .|+=+|..+++.|.+|.++|+.+..- . .
T Consensus 28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il---------------------~----------~------------ 64 (125)
T d1ojta2 28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM---------------------Q----------G------------ 64 (125)
T ss_dssp EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS---------------------T----------T------------
T ss_pred eEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc---------------------c----------c------------
Confidence 59999987 59999999999999999999865210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC--C--cEEEcCEEEEccCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGN 259 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d--G--~~i~ArlVI~ADG~ 259 (549)
.| ..+-+.+.+.+.+.|++++.+++++++..+++++.|++.+ | +++.||+|+.|.|+
T Consensus 65 -----------~d-~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 65 -----------AD-RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp -----------SC-HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred -----------ch-hhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence 01 1244566777888899999999999999999998888753 3 37999999999984
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.10 E-value=2.3e-05 Score=66.45 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=67.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
-++||||| .|+=+|..|++.|.+|.|+|+.+.+- + .
T Consensus 25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l---------------------~----------~------------ 61 (122)
T d1v59a2 25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG---------------------A----------S------------ 61 (122)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------------------S----------S------------
T ss_pred eEEEECCCchHHHHHHHHHhhCcceeEEEeccccc---------------------h----------h------------
Confidence 49999976 69999999999999999999865210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEE--EEEcCC-----cEEEcCEEEEc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLAEG-----KILSSHLIIDA 256 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~~~dG-----~~i~ArlVI~A 256 (549)
.| ..+-+.+.+.+++.|++++.++++++++.++++.. +++.++ +++.||+|+.|
T Consensus 62 -----------~d-~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 62 -----------MD-GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred -----------hh-hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 01 12445666777888999999999999998877644 444332 37999999876
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.10 E-value=1.6e-06 Score=83.18 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=31.0
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
||||||||| +|.++|..+|+.|+||+||||....+
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~GG 37 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGG 37 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 999999976 58889999999999999999987654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=3.1e-05 Score=65.80 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=70.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++||.+..- . .
T Consensus 24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l---------------------~---------------------~- 60 (125)
T d3grsa2 24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL---------------------R---------------------S- 60 (125)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC---------------------T---------------------T-
T ss_pred EEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc---------------------c---------------------c-
Confidence 59999987 59999999999999999999865210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc---CCc------EEEcCEEEEccC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGK------ILSSHLIIDAMG 258 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---dG~------~i~ArlVI~ADG 258 (549)
+| ..+-+.+.+.+++.|++++.+++++++..+++++.+++. +|+ .+.+|+||-|.|
T Consensus 61 -----------~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 61 -----------FD-SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred -----------hh-hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 01 123455667777889999999999999999998876642 232 578999999887
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.06 E-value=3.6e-05 Score=76.20 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=30.5
Q ss_pred cccEEEEcch-HHHHHHHHHHh----CCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr----~GlrVlLIEr~~~~~ 145 (549)
++||||||+| +|+++|+.+|+ +|++|+||||.+..+
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g 61 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER 61 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence 5999999965 68888888874 699999999987754
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.06 E-value=2.2e-05 Score=65.94 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=67.5
Q ss_pred cEEEEcch-HHHHHHHHHH---hCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 008915 112 DVIVCGGT-LGIFIATALS---FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA---r~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~ 187 (549)
.++||||| .|+-+|..|+ ++|.+|.|+|+.+.+- + .
T Consensus 22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL---------------------~----------~--------- 61 (117)
T d1aoga2 22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL---------------------R----------G--------- 61 (117)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS---------------------T----------T---------
T ss_pred eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh---------------------c----------c---------
Confidence 59999976 5998887655 4567899999754210 0 0
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC-EEEEEEcCCcEEEcCEEEEc
Q 008915 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDA 256 (549)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~dG~~i~ArlVI~A 256 (549)
.| ..+-+.+.+.+++.|++++.++++++++..++ .+.|++++|+++.||.||-|
T Consensus 62 --------------~d-~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A 116 (117)
T d1aoga2 62 --------------FD-HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA 116 (117)
T ss_dssp --------------SC-HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred --------------cc-hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence 01 13445667778888999999999999987655 57789999999999999976
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.05 E-value=1.2e-06 Score=82.22 Aligned_cols=38 Identities=45% Similarity=0.552 Sum_probs=32.8
Q ss_pred CCcccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 108 ~~~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+.+|||||||| |+|+++|..|+++|++|+||||.+..+
T Consensus 4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~G 42 (229)
T d1ojta1 4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLG 42 (229)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSS
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 34799999996 569999999999999999999987543
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=1.4e-05 Score=71.62 Aligned_cols=109 Identities=23% Similarity=0.233 Sum_probs=67.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
||||||||| +|+.+|..+++.|++|+|||+..- + +. . ...+++ .+ .
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~~g-g--~~-~---------------~~~~~~-----~~----~----- 48 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG-G--QI-L---------------DTVDIE-----NY----I----- 48 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTT-G--GG-G---------------GCCEEC-----CB----T-----
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEecC-C--cc-c---------------ccccce-----ec----c-----
Confidence 999999965 699999999999999999997521 1 00 0 000000 00 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC---EEEEEEcCCcEEEcCEEEEccCCC
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN---AAVLLLAEGKILSSHLIIDAMGNF 260 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d---gv~V~~~dG~~i~ArlVI~ADG~~ 260 (549)
..+ .++...+...+...+.+.+.+......+..+..... .......++.++.++.++.+.|..
T Consensus 49 ---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 114 (184)
T d1fl2a1 49 ---SVP-----KTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK 114 (184)
T ss_dssp ---TBS-----SEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred ---ccc-----hhhhHHHHHHHHHHhhheeceeeccceeeeecccccccceeeeeeecceeeeccccccccccc
Confidence 000 122244556666677777778888877777654333 233334456688888888888753
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.03 E-value=1.7e-06 Score=80.05 Aligned_cols=37 Identities=35% Similarity=0.441 Sum_probs=32.4
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+|||||||| |+|+++|..++|+|++|+|||+...+.
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~ 39 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE 39 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence 3799999996 569999999999999999999986554
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.03 E-value=1.7e-05 Score=67.10 Aligned_cols=87 Identities=22% Similarity=0.374 Sum_probs=65.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
+|+||||| .|+-+|..|+++|.+|.|+|+.+... + |
T Consensus 34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~------------------~---------------------~---- 70 (122)
T d1xhca2 34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL------------------G---------------------L---- 70 (122)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT------------------T---------------------C----
T ss_pred cEEEECCcHHHHHHHHHhhcccceEEEEecccccc------------------C---------------------C----
Confidence 58999976 59999999999999999999865210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
| ..+.+.+.+.+++.|++++.+++++++. ++++ +.+++++.|++||-|.|.
T Consensus 71 ------------d-~~~~~~~~~~l~~~GV~~~~~~~v~~~~--~~~v---~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 71 ------------D-EELSNMIKDMLEETGVKFFLNSELLEAN--EEGV---LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp ------------C-HHHHHHHHHHHHHTTEEEECSCCEEEEC--SSEE---EETTEEEECSCEEEECCE
T ss_pred ------------C-HHHHHHHHHHHHHCCcEEEeCCEEEEEe--CCEE---EeCCCEEECCEEEEEEEe
Confidence 0 1233445566777899999999998873 4443 347788999999999984
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.02 E-value=6e-06 Score=69.29 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=65.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.++|+||| .|+-+|..|++.|.+|.|+|+.+..- + .
T Consensus 23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il---------------------~----------~------------ 59 (115)
T d1lvla2 23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL---------------------P----------T------------ 59 (115)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS---------------------T----------T------------
T ss_pred eEEEECCCHHHHHHHHHHhhcccceEEEeeecccc---------------------c----------c------------
Confidence 59999976 59999999999999999999875210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcC--CcEEEcCEEEEccC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--GKILSSHLIIDAMG 258 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~d--G~~i~ArlVI~ADG 258 (549)
+|+ .+.+.+.+.+.+.|++++.+++|+++. ++...+...+ ++++.||.||-|.|
T Consensus 60 -----------~d~-~~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 60 -----------YDS-ELTAPVAESLKKLGIALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp -----------SCH-HHHHHHHHHHHHHTCEEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred -----------ccc-hhHHHHHHHHHhhcceEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 011 234556667777899999999999874 4444443333 35899999999987
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.01 E-value=2.3e-05 Score=65.89 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=67.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.|+||||| .|+-+|..|++.|.+|.++|+.+...+ .
T Consensus 24 ~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-------------------------------~------------ 60 (121)
T d1mo9a2 24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-------------------------------I------------ 60 (121)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-------------------------------C------------
T ss_pred EEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-------------------------------c------------
Confidence 59999987 599999999999999999998652110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE-----cCCcEEEcCEEEEccC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-----AEGKILSSHLIIDAMG 258 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-----~dG~~i~ArlVI~ADG 258 (549)
.| ..+.+.+.+.+++.|++++.+++++.++.++++....+ .+++++.||+||-|.|
T Consensus 61 -----------~d-~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 61 -----------KD-NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp -----------CS-HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred -----------cc-cchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 01 12334556666778999999999999998876533221 1345899999999987
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.99 E-value=1.5e-05 Score=67.74 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=69.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.++|+||| .|+=+|..+++.|.+|.|+||.+..-. .
T Consensus 27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~------------------------------------------~- 63 (123)
T d1dxla2 27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP------------------------------------------T- 63 (123)
T ss_dssp EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------T-
T ss_pred eEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc------------------------------------------h-
Confidence 59999987 599999999999999999998753110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEc---CC--cEEEcCEEEEc
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDA 256 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---dG--~~i~ArlVI~A 256 (549)
.| ..+...|.+.+++.|++++.++++++++.++++++|++. +| +++.||.|+.|
T Consensus 64 -----------~d-~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvA 122 (123)
T d1dxla2 64 -----------MD-AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS 122 (123)
T ss_dssp -----------SC-HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred -----------hh-hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence 01 124455677778889999999999999988888877653 33 36999988765
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.98 E-value=4e-06 Score=78.50 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=32.6
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+||||||||| +|+++|..+|+.|++|+|||+.+.++
T Consensus 2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~ 39 (235)
T d1h6va1 2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP 39 (235)
T ss_dssp CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 47999999965 69999999999999999999987654
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=1e-05 Score=73.49 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=32.3
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
....|+|||| ++|+++|..|+++|++|+|+||.+.++
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~G 79 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG 79 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccC
Confidence 3578999996 569999999999999999999988655
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.95 E-value=2.6e-06 Score=78.88 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=32.2
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+||||||||| +|+++|..+++.|.||+|||+....+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~G 39 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG 39 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 37999999965 69999999999999999999876543
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.91 E-value=3.1e-06 Score=84.22 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=31.2
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.+|||||||+| .|+++|..||++|+||+|||++..
T Consensus 3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~ 38 (379)
T d2f5va1 3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI 38 (379)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence 47999999965 588999999999999999999754
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.90 E-value=3e-06 Score=78.93 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=31.4
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
.+|||+|||| ++|+++|..+++.|+||+|||+....
T Consensus 4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~ 40 (233)
T d1v59a1 4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL 40 (233)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 4799999996 56999999999999999999987543
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=5.1e-06 Score=79.56 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=32.8
Q ss_pred CCcccEEEEcchH-HHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 108 ~~~yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..+.+|||||||+ |+++|..|+++|++|+|+|++..++
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~G 41 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG 41 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 3467899999875 9999999999999999999987653
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.85 E-value=4.9e-06 Score=76.59 Aligned_cols=33 Identities=36% Similarity=0.407 Sum_probs=29.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-cEEEEccCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLK 144 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~~~ 144 (549)
||+||||| +|+++|..|+++|+ +|+|+||++.+
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~ 36 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI 36 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 89999976 59999999999997 69999998754
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=4e-06 Score=77.63 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=31.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+||||||||| +|+++|..+++.|++|+||||....+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~GG 38 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGG 38 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCcCC
Confidence 6999999965 68889999999999999999976544
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=2.5e-06 Score=79.64 Aligned_cols=129 Identities=19% Similarity=0.280 Sum_probs=71.2
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCC--cEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~ 185 (549)
.++++|||||| +|+.+|..|.++|. +|++|++.+.+...|. .+|.. + +............+..
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~-~Ls~~----~-----~~~~~~~~~~~~~~~~---- 68 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP-PLSKE----L-----WFSDDPNVTKTLRFKQ---- 68 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG-GGGTG----G-----GCC--CTHHHHCEEEC----
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCcccc-cccee----c-----ccccCchhhhhhhhhh----
Confidence 37999999976 58889999987765 6999998766543332 12211 0 0000000000000000
Q ss_pred ccCCc-cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 186 FEGKG-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 186 f~~~~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
..... .+..... .+.+... ....+.+.|++++.+++|++++.++. +|+++||+++.++.||-|.|.
T Consensus 69 ~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~ 135 (213)
T d1m6ia1 69 WNGKERSIYFQPP-SFYVSAQ-----DLPHIENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGG 135 (213)
T ss_dssp TTSCEEESBSSCG-GGSBCTT-----TTTTSTTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCE
T ss_pred cccchhhhhcCCh-hhhhhhh-----hHHHHHHCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeee
Confidence 00000 0000000 0000000 01233457889999999999965554 567889999999999999994
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=97.83 E-value=5.4e-06 Score=78.48 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=32.6
Q ss_pred cCCEEEeCceEEEEEEECCEEEEEEcC-C--cEEEcCEEEEccCCC
Q 008915 218 LGGVIFEGYSVSSICTYENAAVLLLAE-G--KILSSHLIIDAMGNF 260 (549)
Q Consensus 218 ~G~~v~~~t~v~~i~~~~dgv~V~~~d-G--~~i~ArlVI~ADG~~ 260 (549)
.|++++.+++|++|..++++++|.+.+ | ++++||.||-|.|..
T Consensus 232 ~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~ 277 (347)
T d2ivda1 232 LGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH 277 (347)
T ss_dssp HGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred hhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHH
Confidence 478999999999998888877776643 3 379999999998743
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.78 E-value=6.3e-06 Score=76.07 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=32.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+||||||||| +|+++|..+++.|++|+||||....+
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG 39 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGG 39 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 6999999965 69999999999999999999987654
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=6.8e-06 Score=76.02 Aligned_cols=36 Identities=36% Similarity=0.529 Sum_probs=32.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+||||||||| +|+++|..+++.|.+|+|||+...++
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG 39 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGG 39 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCC
Confidence 6999999965 69999999999999999999987655
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=7.4e-06 Score=80.24 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=32.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.||||||||| .|+++|..|+++|++|+|+|+....+
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG 37 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG 37 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence 4899999976 59999999999999999999988765
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.74 E-value=0.00017 Score=60.83 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=66.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~ 190 (549)
.++||||| .|+=+|..|++.|.+|.|+++.+..+ .
T Consensus 22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~--------------------------------~------------ 57 (122)
T d1h6va2 22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--------------------------------G------------ 57 (122)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST--------------------------------T------------
T ss_pred eEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc--------------------------------c------------
Confidence 49999976 59999999999999999998643110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECC----EEEEEEcC---Cc--EEEcCEEEEccC
Q 008915 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAE---GK--ILSSHLIIDAMG 258 (549)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~~~d---G~--~i~ArlVI~ADG 258 (549)
+| ..+-+.+.+.+++.|++++.+++++.+...++ .+.+++.+ ++ .+.+|.|+.|.|
T Consensus 58 -----------~D-~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 58 -----------FD-QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp -----------SC-HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred -----------CC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 01 12345667778888999999999999976543 35555543 22 467899998877
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.65 E-value=1.2e-05 Score=80.39 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=29.6
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
.+|||||||+| .|+.+|..|+++|++|+|||++
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 37999999976 5888888999999999999986
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.63 E-value=1.6e-05 Score=79.77 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=30.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.||+||||+| .|+.+|..|++.|.+|+|||++.
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~ 35 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 35 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence 6999999976 58889999999999999999984
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.57 E-value=1.6e-05 Score=73.64 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=32.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
+||||||||| +|+.+|..+++.|.+|+|||+....+
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG 41 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGG 41 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 6999999965 69999999999999999999987654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=97.57 E-value=2.3e-05 Score=73.79 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=29.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.||||||| +|+++|..|+++|++|+|+|+++.++
T Consensus 3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G 37 (373)
T d1seza1 3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG 37 (373)
T ss_dssp EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 39999976 69999999999999999999987653
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=97.56 E-value=2.2e-05 Score=75.66 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=36.2
Q ss_pred HhcCCEEEeCceEEEEEEECCEEEEEEc----CCcEEEcCEEEEccC
Q 008915 216 ISLGGVIFEGYSVSSICTYENAAVLLLA----EGKILSSHLIIDAMG 258 (549)
Q Consensus 216 ~~~G~~v~~~t~v~~i~~~~dgv~V~~~----dG~~i~ArlVI~ADG 258 (549)
++.|++++.+++|++|..++++++|.+. ++++++||.||.|.+
T Consensus 246 ~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p 292 (370)
T d2iida1 246 RDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT 292 (370)
T ss_dssp HHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSC
T ss_pred HhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCC
Confidence 4568899999999999999999888764 245899999999875
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.48 E-value=3.4e-05 Score=78.34 Aligned_cols=34 Identities=29% Similarity=0.605 Sum_probs=30.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCC-CcEEEEccCCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL 143 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~G-lrVlLIEr~~~ 143 (549)
+||+|||||| .|+.+|..|++.| ++|+|||+++.
T Consensus 24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (391)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 6999999976 5889999999998 89999999964
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.46 E-value=3.3e-05 Score=76.92 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=29.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-+||||||+| .|+.+|..||++|++|+|||+..
T Consensus 2 ~v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 2 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 3799999976 58889999999999999999963
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.45 E-value=3.3e-05 Score=78.10 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=30.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCC-CcEEEEccCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~G-lrVlLIEr~~~ 143 (549)
.+||+|||||| .|+.+|..|++.| ++|+|||+++.
T Consensus 16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~ 52 (385)
T d1cf3a1 16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY 52 (385)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 36999999976 5889999999975 89999999863
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=97.44 E-value=7.3e-05 Score=71.19 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=32.2
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
.+||||||||| +|+.+|..+++.|.+|++||+.+..+
T Consensus 41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG 78 (261)
T d1mo9a1 41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG 78 (261)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence 47999999976 58889999999999999999987644
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.35 E-value=5.7e-05 Score=70.68 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=30.5
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCC-cEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~Gl-rVlLIEr~~~~~ 145 (549)
.+||||||||| +|.++|..+|+.|. +|+|+|+.....
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~ 40 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG 40 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence 37999999965 68889889999986 599999887543
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.33 E-value=3.8e-05 Score=76.78 Aligned_cols=35 Identities=37% Similarity=0.667 Sum_probs=30.5
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
..||+|||||| +|+.+|..||++ +||+|||++..+
T Consensus 25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~ 60 (351)
T d1ju2a1 25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP 60 (351)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG
T ss_pred CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence 36999999976 588999999987 999999999754
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.28 E-value=0.00013 Score=67.47 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=29.2
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCC-cEEEEccCCC
Q 008915 109 GTFDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTL 143 (549)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LAr~Gl-rVlLIEr~~~ 143 (549)
..|||||||| |+|+++|..+|+.|. +|+|+|+...
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~ 38 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV 38 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence 3799999996 569999999999886 6899998654
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.14 E-value=0.00012 Score=71.46 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=35.7
Q ss_pred ccCCcEEEeCCCCCCCCCCCCCc--hhhHHHHHHHHHHHHHHHHh
Q 008915 385 AAFNRILQFGDASGIQSPVSFGG--FGSLTRHLGRLSTGVYEAVR 427 (549)
Q Consensus 385 ~~~~rvlLVGDAA~~v~Pltg~G--~g~~lrd~~~La~~i~~Al~ 427 (549)
...++++++|||+..+++....| ++.|+.+..+.|+.|.+.|+
T Consensus 266 ~~~pgl~~~Gdaa~~v~g~~r~G~t~g~m~~sG~~aA~~i~~~l~ 310 (311)
T d2gjca1 266 AGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 310 (311)
T ss_dssp TTSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EccCCEEEEeeecCcccCcCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 34589999999999888776555 88888888999999988875
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.10 E-value=0.00016 Score=71.04 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=30.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
-|+||||| .|+++|..|+++|++|+|+|+....+
T Consensus 4 KI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG 38 (314)
T d2bi7a1 4 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 38 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 58999976 59999999999999999999998765
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=97.06 E-value=0.0013 Score=59.22 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=67.4
Q ss_pred EEEEcch-HHHHHHHHHHhC--CCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 008915 113 VIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~--GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~ 189 (549)
|+||||| +|+.+|..|++. +.+|.++||........+ .+..+ +..+ + .
T Consensus 3 VvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~------~~~~~--------------l~~~-----~----~ 53 (198)
T d1nhpa1 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSA------GMQLY--------------LEGK-----V----K 53 (198)
T ss_dssp EEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGG------GHHHH--------------HTTS-----S----C
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccccccc------Ccchh--------------hccc-----c----c
Confidence 8999977 599999999876 668999999875432110 11111 0000 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEE-cCCc--EEEcCEEEEccCCC
Q 008915 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF 260 (549)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~dG~--~i~ArlVI~ADG~~ 260 (549)
. .+.... ...+.+.+.|++++.+++|++++.+++.+++.. .+|+ ++.++.+|-|.|..
T Consensus 54 ~---~~~~~~----------~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~ 114 (198)
T d1nhpa1 54 D---VNSVRY----------MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAV 114 (198)
T ss_dssp C---GGGSBS----------CCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred c---hHHHHH----------hhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecce
Confidence 0 000000 012344557999999999999988888877764 3444 68999999999953
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.03 E-value=0.00029 Score=61.70 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=59.3
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCCCccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~~r~~~IS~~~l~~L~~lGl~~~~eie~~i~~~~~~~~i~f~~~~~ 191 (549)
|+||||| +|+-+|..|++ +.+|.|+|+.+.+...+.. + ...+. .. .. ...
T Consensus 3 VvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~-~-------------------~~~~~-~~----~~---~~~ 53 (167)
T d1xhca1 3 VVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPM-L-------------------SHYIA-GF----IP---RNR 53 (167)
T ss_dssp EEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTT-H-------------------HHHHT-TS----SC---GGG
T ss_pred EEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccc-h-------------------hhhhh-hh----hh---hhh
Confidence 8999976 59999988865 7899999988765432110 0 00000 00 00 000
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCC
Q 008915 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (549)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~ 259 (549)
+. .. . .+...+.+++++.++.++.++. +..++ ..++.++.++.+|-|.|.
T Consensus 54 ~~-~~------~--------~~~~~~~~v~~~~~~~v~~i~~--~~~~~-~~~~~~i~~D~li~a~G~ 103 (167)
T d1xhca1 54 LF-PY------S--------LDWYRKRGIEIRLAEEAKLIDR--GRKVV-ITEKGEVPYDTLVLATGA 103 (167)
T ss_dssp GC-SS------C--------HHHHHHHTEEEECSCCEEEEET--TTTEE-EESSCEEECSEEEECCCE
T ss_pred hh-HH------H--------HHHHHhccceeeeecccccccc--ccccc-cccccccccceeEEEEEe
Confidence 00 00 0 1122345789999999988743 22233 346778999999999984
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.97 E-value=0.00031 Score=62.89 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=29.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCc-EEEEccCCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLKG 145 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Glr-VlLIEr~~~~~ 145 (549)
-|+||||| +|+++|..|+++|++ |.|+||.+..+
T Consensus 6 kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g 41 (196)
T d1gtea4 6 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVG 41 (196)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred EEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence 49999965 699999999999995 99999987544
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.87 E-value=0.0005 Score=64.02 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=32.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
..-+|+||||| +|+++|..|+++|++|+|+|+....+
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G 85 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG 85 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence 35789999965 69999999999999999999987654
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.82 E-value=0.00072 Score=62.87 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=27.0
Q ss_pred ccEEEEcch-HHHHHHHHHHhC---CCcEEEEccCCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFK---GLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~---GlrVlLIEr~~~~~ 145 (549)
.+||||||| +|.++|..+|+. |++|+|||+....+
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG 40 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGG 40 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTH
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCc
Confidence 479999965 688888777654 57899999977654
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.72 E-value=0.00033 Score=64.66 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.5
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCC-------CcEEEEccCCCCC
Q 008915 111 FDVIVCGG-TLGIFIATALSFKG-------LRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LAr~G-------lrVlLIEr~~~~~ 145 (549)
+.|+|||+ ++|+++|..|+++| ++|.|+||.+.++
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G 45 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW 45 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence 78999995 57999999999988 5899999988765
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.59 E-value=0.0029 Score=55.98 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=31.5
Q ss_pred cCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 218 ~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
.+++++.+++++.+..+. ..+.+++|+++.++.||-|.|
T Consensus 68 ~~i~~~~~~~v~~i~~~~--~~~~~~~g~~~~~D~vi~a~G 106 (183)
T d1d7ya1 68 PEVEWLLGVTAQSFDPQA--HTVALSDGRTLPYGTLVLATG 106 (183)
T ss_dssp TTCEEEETCCEEEEETTT--TEEEETTSCEEECSEEEECCC
T ss_pred CCeEEEEecccccccccc--ceeEecCCcEeeeeeEEEEEE
Confidence 467899999998875443 356678899999999999988
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.29 E-value=0.0014 Score=60.39 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=28.4
Q ss_pred cEEEEcc-hHHHHHHHHHHhC--CCcEEEEccCCCCC
Q 008915 112 DVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKG 145 (549)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LAr~--GlrVlLIEr~~~~~ 145 (549)
-|+|||| ++|+++|..|+++ |++|+|+|+.+.++
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g 39 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF 39 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 4999996 5699999889765 88999999998665
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.02 E-value=0.00041 Score=63.86 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=38.0
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccCCChH
Q 008915 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (549)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG~~S~ 262 (549)
..+|+..+..+|.+++.+.|+++... +|+++. +.....+++||.|.|..|.
T Consensus 137 ~~id~~~~~~~L~~~~~~~G~~~~~~-~v~~l~-----------~~~~~~~d~vVnctG~~a~ 187 (246)
T d1kifa1 137 LILEGRKYLQWLTERLTERGVKFFLR-KVESFE-----------EVARGGADVIINCTGVWAG 187 (246)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEEEC-CCCCHH-----------HHHHTTCSEEEECCGGGHH
T ss_pred eEEcHHHHHHHHHHHHHHCCCEEEEe-EeCCHH-----------HhccCCCCEEEECCccccc
Confidence 45899999999999999999988654 343321 1113457999999999884
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.85 E-value=0.0041 Score=64.10 Aligned_cols=38 Identities=39% Similarity=0.441 Sum_probs=33.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCCC
Q 008915 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (549)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (549)
.+|||||+|-| .=+.+|++|++.|.||+-|||+..-+.
T Consensus 5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg 43 (491)
T d1vg0a1 5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG 43 (491)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCC
Confidence 47999999955 588899999999999999999998653
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.019 Score=49.51 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=36.8
Q ss_pred HHHHHHhcCCEEEeCceEEEEEEECCEEEEEEcCC-cEEEcCEEEEccCC
Q 008915 211 VKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGN 259 (549)
Q Consensus 211 L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~dG-~~i~ArlVI~ADG~ 259 (549)
....++..|++++.++.+..+ +++++.+...+. +++.||.||-|.|.
T Consensus 114 ~~~~~~~~gv~~~~~~~v~~i--~~~gv~~~~~g~e~~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 114 HRTTLLSRGVKMIPGVSYQKI--DDDGLHVVINGETQVLAVDNVVICAGQ 161 (162)
T ss_dssp HHHHHHHTTCEEECSCEEEEE--ETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred HHHHHhhCCeEEEeeeEEEEE--cCCCCEEecCCeEEEEECCEEEECCCC
Confidence 455667789999999999986 578888776433 26999999999983
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.71 E-value=0.016 Score=49.76 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=28.9
Q ss_pred ccEEEE--cch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVC--GGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIV--GGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
-.|+|+ ||| .|+-+|..|+++|.+|.|+|+.+.+.
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~ 77 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN 77 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 356666 666 79999999999999999999987543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.59 E-value=0.0099 Score=51.94 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=29.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
=|||||||| .|+-+|..|++.|.+|.++++.+.+.
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~ 39 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV 39 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccc
Confidence 379999976 59999999999999999888776543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.39 E-value=0.013 Score=50.57 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=27.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCC--CcEEEEccCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTL 143 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~G--lrVlLIEr~~~ 143 (549)
-||||||| +|+.+|..|.+.| .+|+|||+.+.
T Consensus 4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 48999976 5999999999877 58999998764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.06 E-value=0.018 Score=50.43 Aligned_cols=30 Identities=27% Similarity=0.197 Sum_probs=27.1
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
+.|+|+| +|+.+|+.|+++|++|.++||.+
T Consensus 4 iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 7899965 69999999999999999999864
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.02 E-value=0.023 Score=48.81 Aligned_cols=31 Identities=32% Similarity=0.240 Sum_probs=28.0
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|+|+| +|++.|..|++.|++|.+++|.+.
T Consensus 3 I~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 8899965 699999999999999999998764
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.58 E-value=0.043 Score=48.62 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEECC--EEEEEEcCCcEEEcCEEEE
Q 008915 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIID 255 (549)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d--gv~V~~~dG~~i~ArlVI~ 255 (549)
.+-+.|.+.+++.|++++.+++|++|..+++ .+++.+.+|++++||.||.
T Consensus 237 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~ 288 (297)
T d2bcgg1 237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIA 288 (297)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEE
T ss_pred HHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEE
Confidence 4667788888899999999999999987754 3554456888999999984
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.47 E-value=0.026 Score=48.82 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=27.8
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|+|+| +|..+|..|+++|++|.|+||...
T Consensus 5 IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~ 36 (182)
T d1e5qa1 5 VLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE 36 (182)
T ss_dssp EEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence 8999965 799999999999999999998753
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.028 Score=50.48 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=27.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|+|+| +|...|..+|++|++|.++|+.+
T Consensus 6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 38999966 69999999999999999999765
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=93.06 E-value=0.033 Score=49.59 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|||+| +|...|+.++++|++|.++|+.+
T Consensus 6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 38999976 69999999999999999999864
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=92.90 E-value=0.049 Score=42.60 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=29.3
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
-|+|+| |..|.++|..|+++|.+|.+.|.+..+.
T Consensus 7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~ 41 (93)
T d2jfga1 7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP 41 (93)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCT
T ss_pred EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCch
Confidence 489999 6679999999999999999999876543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.38 E-value=0.049 Score=45.36 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=27.4
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|+|+| .|..+|-.|.++|++|.+||+.+
T Consensus 3 IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 3 IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 8999965 79999999999999999999875
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.35 E-value=0.067 Score=46.18 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=26.5
Q ss_pred EEEEc--chHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCG--GTLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVG--Gg~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|+| |+.|.++|..|+++|++|.|..|.+
T Consensus 3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 3 VALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 78885 4689999999999999999999865
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=90.94 E-value=1.8 Score=35.21 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=27.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
=+|+||||| .++=.|..|++.+-+|.+|-|.+
T Consensus 28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~ 60 (126)
T d1trba2 28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 60 (126)
T ss_dssp SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence 479999988 57778889999999999997654
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.40 E-value=0.095 Score=46.95 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=27.0
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|+|.| +|+.+|+.||++|++|..+|...
T Consensus 3 I~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 7899966 79999999999999999999653
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.88 E-value=0.1 Score=43.16 Aligned_cols=31 Identities=29% Similarity=0.240 Sum_probs=27.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.+||||.| .|..+|..|.+.|++|.++|+.+
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 37899955 79999999999999999999875
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=89.86 E-value=0.075 Score=47.37 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=28.2
Q ss_pred ccEEEEcchH-HHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
..|.|+|+|. |.++|..|++.|.+|.|..|.+
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 4699999875 9999999999999999998753
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.34 E-value=0.42 Score=40.69 Aligned_cols=34 Identities=32% Similarity=0.246 Sum_probs=27.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCc-EEEEccCCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLKG 145 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~Glr-VlLIEr~~~~~ 145 (549)
.||||||| .|+=+|..+.|.|.+ |.++.|.+...
T Consensus 47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~ 82 (153)
T d1gtea3 47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVN 82 (153)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGG
T ss_pred EEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhh
Confidence 59999988 688899999999876 78998876543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.98 E-value=0.19 Score=46.91 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=27.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|.+++|..
T Consensus 17 alITGassGIG~aiA~~la~~G~~Vil~~r~~ 48 (269)
T d1xu9a_ 17 VIVTGASKGIGREMAYHLAKMGAHVVVTARSK 48 (269)
T ss_dssp EEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 788895 799999999999999999999854
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=87.70 E-value=0.19 Score=45.80 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=28.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|.|| |+|..+|..|+++|++|.+++|...
T Consensus 5 VlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 5 VIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 789995 7899999999999999999998764
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=87.69 E-value=0.22 Score=45.51 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|||-|| |+|.++|..|+++|.+|++++++..
T Consensus 4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 567784 7899999999999999999998653
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.51 E-value=0.23 Score=45.48 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=26.9
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..||++|++|.+++|..
T Consensus 8 alITGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (248)
T d2o23a1 8 AVITGGASGLGLATAERLVGQGASAVLLDLPN 39 (248)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 678885 789999999999999999999875
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=87.47 E-value=0.12 Score=47.84 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=24.4
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|.| ||+|-+ +|+.||++|+||+|||-.+.
T Consensus 4 Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q 40 (269)
T d1cp2a_ 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred EEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 67888 877554 46678899999999997764
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=87.45 E-value=0.13 Score=48.40 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=24.3
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|.| ||+|-+ +|++||++|.||+|||-.+.
T Consensus 5 IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ 41 (289)
T d2afhe1 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 56778 887665 46678999999999997654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=87.38 E-value=0.26 Score=42.14 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=26.5
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|.|||.| +|.+.|..|+++|++|.++||.+
T Consensus 3 I~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 7899955 79999999999999999999864
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=87.16 E-value=0.29 Score=42.53 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=29.4
Q ss_pred cccEEEEc-chHHHHHHHHHHhCCCcEEEEccCC
Q 008915 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
+-+|-||| |-+|..+|..|+++|++|.+.||.+
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 34699999 7789999999999999999999875
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.98 E-value=0.19 Score=43.96 Aligned_cols=30 Identities=23% Similarity=0.249 Sum_probs=26.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
.|.|+|+| .|.++|..|++.|.+|.+..|.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 48899977 5999999999999999999764
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=86.46 E-value=0.23 Score=44.87 Aligned_cols=32 Identities=34% Similarity=0.495 Sum_probs=28.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
++|.|| |+|..+|..|+++|.+|.+.+|....
T Consensus 4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 4 ALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 677785 79999999999999999999987654
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=86.26 E-value=0.33 Score=40.86 Aligned_cols=31 Identities=29% Similarity=0.609 Sum_probs=27.8
Q ss_pred cEEEEcc-h-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG-T-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG-g-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|.|||| | +|..+|..|.++|+.|.++|+..
T Consensus 11 kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 11 KIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred eEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 5999994 6 69999999999999999999864
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.94 E-value=0.31 Score=44.41 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=27.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|.|| |+|..+|..|+++|++|.++++...
T Consensus 5 vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~ 37 (236)
T d1dhra_ 5 VLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 37 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 788995 7899999999999999999998654
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=85.87 E-value=0.19 Score=46.62 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=25.0
Q ss_pred ccEEEE-c-chHHHHH-----HHHHHhCCCcEEEEccCCC
Q 008915 111 FDVIVC-G-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 111 yDVIIV-G-Gg~G~~~-----Aa~LAr~GlrVlLIEr~~~ 143 (549)
+-|||+ | ||+|-++ |..||++|.||++||-.+.
T Consensus 20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~ 59 (279)
T d1ihua2 20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 59 (279)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 456666 6 7776653 6678899999999998754
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=85.63 E-value=0.31 Score=36.83 Aligned_cols=31 Identities=29% Similarity=0.225 Sum_probs=27.7
Q ss_pred EEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|-|+||| +|-+++.+..+.|++|.++|....
T Consensus 4 vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 4 VCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred EEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 7899988 899999999999999999997653
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=85.50 E-value=0.35 Score=42.55 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=27.5
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-|+|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 25 ~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred EEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 3888884 789999999999999999999874
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.39 E-value=0.39 Score=38.72 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=29.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
.-|.|+||| +|-.+|.+..+.|++|.++|..+.
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 569999988 899999999999999999998764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=84.93 E-value=0.31 Score=45.07 Aligned_cols=31 Identities=32% Similarity=0.603 Sum_probs=27.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
++|.|| |+|..+|..|+++|.+|++.+|...
T Consensus 12 alITGas~GIG~aia~~la~~Ga~V~i~~r~~~ 44 (260)
T d1h5qa_ 12 IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA 44 (260)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 777785 7899999999999999999998753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=84.92 E-value=0.34 Score=41.47 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=25.2
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+|+| |++|++++..+...|.+|.++|+.+
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 488889 5679988777777899999999764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=84.76 E-value=0.37 Score=44.47 Aligned_cols=30 Identities=40% Similarity=0.567 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|++.+|..
T Consensus 8 ~lITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (251)
T d1vl8a_ 8 ALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL 39 (251)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 778885 789999999999999999999864
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.73 E-value=0.37 Score=44.18 Aligned_cols=30 Identities=37% Similarity=0.468 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|++++|..
T Consensus 10 ~lITGas~GIG~aia~~la~~G~~V~~~~r~~ 41 (244)
T d1pr9a_ 10 VLVTGAGKGIGRGTVQALHATGARVVAVSRTQ 41 (244)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 778885 789999999999999999999863
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=84.65 E-value=0.33 Score=44.50 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=27.1
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
--|+|+| ||+|+.+|..|++.|+ +..|+|...
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 4599999 7899999999999998 567888554
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=84.65 E-value=0.37 Score=44.76 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=26.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 9 alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (268)
T d2bgka1 9 AIITGGAGGIGETTAKLFVRYGAKVVIADIAD 40 (268)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 777785 789999999999999999999864
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.53 E-value=0.38 Score=44.20 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=26.1
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|++.+|..
T Consensus 10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~~ 41 (244)
T d1yb1a_ 10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDINK 41 (244)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 566685 789999999999999999999864
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=84.52 E-value=0.38 Score=44.55 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|.+.+|..
T Consensus 7 alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 38 (258)
T d1iy8a_ 7 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSS 38 (258)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 677785 789999999999999999999864
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.43 E-value=0.39 Score=44.29 Aligned_cols=30 Identities=40% Similarity=0.589 Sum_probs=26.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|.+.+|..
T Consensus 6 alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 37 (254)
T d2gdza1 6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNL 37 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 677785 799999999999999999999864
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.08 E-value=0.35 Score=44.55 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=26.2
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|++++|..
T Consensus 13 alITGas~GIG~a~a~~la~~Ga~V~~~~r~~ 44 (251)
T d2c07a1 13 ALVTGAGRGIGREIAKMLAKSVSHVICISRTQ 44 (251)
T ss_dssp EEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 666685 789999999999999999999864
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.02 E-value=0.41 Score=44.12 Aligned_cols=30 Identities=37% Similarity=0.491 Sum_probs=26.1
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|++.+|..
T Consensus 4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 35 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYND 35 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 467785 789999999999999999999864
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=83.90 E-value=0.48 Score=40.83 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=27.9
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
-.|+|+| ||++-+++.+|++.|.+|.++.|..
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 4699999 6889999999999999999998754
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.77 E-value=0.44 Score=43.67 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=26.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|++++|..
T Consensus 8 alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (242)
T d1cyda_ 8 ALVTGAGKGIGRDTVKALHASGAKVVAVTRTN 39 (242)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 678885 789999999999999999999763
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=83.68 E-value=0.46 Score=43.63 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=26.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|++.|.+|.+.+|..
T Consensus 8 alVTGas~GIG~aia~~la~~Ga~V~~~~~~~ 39 (247)
T d2ew8a1 8 AVITGGANGIGRAIAERFAVEGADIAIADLVP 39 (247)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 677785 789999999999999999999865
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=83.63 E-value=0.43 Score=44.74 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=26.9
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|++++|..
T Consensus 28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~~ 59 (294)
T d1w6ua_ 28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRKM 59 (294)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 788884 789999999999999999999864
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=83.50 E-value=0.44 Score=44.05 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=26.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|.+.+|..
T Consensus 8 alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (260)
T d1zema1 8 CLVTGAGGNIGLATALRLAEEGTAIALLDMNR 39 (260)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 677785 789999999999999999999864
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=83.44 E-value=0.44 Score=44.48 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 8 alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (276)
T d1bdba_ 8 VLITGGASGLGRALVDRFVAEGAKVAVLDKSA 39 (276)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 778885 789999999999999999999864
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=83.39 E-value=0.47 Score=43.12 Aligned_cols=30 Identities=37% Similarity=0.504 Sum_probs=27.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.+.+|..
T Consensus 7 ~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~ 38 (234)
T d1o5ia_ 7 VLVLAASRGIGRAVADVLSQEGAEVTICARNE 38 (234)
T ss_dssp EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 788885 799999999999999999999864
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.35 E-value=0.39 Score=44.36 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|.+.+|+.
T Consensus 8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (256)
T d1k2wa_ 8 ALITGSARGIGRAFAEAYVREGARVAIADINL 39 (256)
T ss_dssp EEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 778885 789999999999999999999863
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=83.34 E-value=0.36 Score=44.64 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=26.1
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|++.+|..
T Consensus 7 alITGas~GIG~aiA~~la~~Ga~V~~~~r~~ 38 (260)
T d1x1ta1 7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGD 38 (260)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 566684 789999999999999999999864
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=83.21 E-value=0.49 Score=43.50 Aligned_cols=30 Identities=37% Similarity=0.540 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|-|| |+|..+|..|+++|.+|.+.+|..
T Consensus 8 alITGas~GIG~aia~~la~~G~~V~~~~~~~ 39 (248)
T d2d1ya1 8 VLVTGGARGIGRAIAQAFAREGALVALCDLRP 39 (248)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 677785 789999999999999999999875
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.02 E-value=0.48 Score=43.75 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=26.9
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.+.+|..
T Consensus 13 ~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~ 44 (257)
T d1xg5a_ 13 ALVTGASGGIGAAVARALVQQGLKVVGCARTV 44 (257)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 888895 789999999999999999999863
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.89 E-value=0.47 Score=44.88 Aligned_cols=30 Identities=37% Similarity=0.457 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|++.+|..
T Consensus 15 alITGas~GIG~aia~~la~~Ga~Vvi~~r~~ 46 (297)
T d1yxma1 15 AIVTGGATGIGKAIVKELLELGSNVVIASRKL 46 (297)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 778885 789999999999999999999864
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.82 E-value=0.5 Score=43.23 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|++.|.+|++.+|..
T Consensus 8 ~lITGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (242)
T d1ulsa_ 8 VLITGAAHGIGRATLELFAKEGARLVACDIEE 39 (242)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 677785 789999999999999999999864
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=82.68 E-value=0.51 Score=43.65 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|.+.+|+.
T Consensus 11 alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 42 (259)
T d2ae2a_ 11 ALVTGGSRGIGYGIVEELASLGASVYTCSRNQ 42 (259)
T ss_dssp EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 778885 799999999999999999999863
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=82.54 E-value=0.51 Score=43.57 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|++.+|..
T Consensus 8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (254)
T d1hdca_ 8 VIITGGARGLGAEAARQAVAAGARVVLADVLD 39 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 788885 789999999999999999999864
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.46 E-value=0.52 Score=43.38 Aligned_cols=30 Identities=37% Similarity=0.604 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|.+.+|..
T Consensus 9 alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (250)
T d1ydea1 9 VVVTGGGRGIGAGIVRAFVNSGARVVICDKDE 40 (250)
T ss_dssp EEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 778885 789999999999999999999863
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=82.37 E-value=0.43 Score=43.03 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=30.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCCC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~~ 145 (549)
||+||||| .|+++|+.|+++|++|+|+||++.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 36 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG 36 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence 89999976 59999999999999999999987653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.32 E-value=0.5 Score=40.50 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=24.3
Q ss_pred cEEEEc-chHHHHHHHHHHhCCC-cEEEEccCC
Q 008915 112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (549)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LAr~Gl-rVlLIEr~~ 142 (549)
.|+|+| |++|++++..+...|. +|.++|+++
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 61 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence 388999 5678887777777898 799999764
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=82.31 E-value=0.39 Score=44.52 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=26.2
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|.+.+|+.
T Consensus 8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (264)
T d1spxa_ 8 AIITGSSNGIGRATAVLFAREGAKVTITGRHA 39 (264)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 566684 789999999999999999999864
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=82.24 E-value=0.54 Score=43.29 Aligned_cols=30 Identities=37% Similarity=0.584 Sum_probs=25.9
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|-|| |+|.++|..|+++|.+|.+.+|..
T Consensus 5 alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 36 (257)
T d2rhca1 5 ALVTGATSGIGLEIARRLGKEGLRVFVCARGE 36 (257)
T ss_dssp EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 366685 799999999999999999999853
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.17 E-value=0.42 Score=43.82 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=26.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|++++|.+
T Consensus 9 alITGas~GIG~aia~~la~~G~~Vi~~~r~~ 40 (245)
T d2ag5a1 9 IILTAAAQGIGQAAALAFAREGAKVIATDINE 40 (245)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 677784 789999999999999999999864
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.86 E-value=0.57 Score=42.98 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=26.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|-|| |+|..+|..|+++|.+|.+.+|..
T Consensus 9 alITGas~GIG~aia~~la~~G~~V~~~~r~~ 40 (244)
T d1nffa_ 9 ALVSGGARGMGASHVRAMVAEGAKVVFGDILD 40 (244)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 677784 789999999999999999999864
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=81.70 E-value=0.38 Score=42.16 Aligned_cols=41 Identities=7% Similarity=0.053 Sum_probs=34.4
Q ss_pred cCCEEEeCceEEEEEEECCEEEEEEcCCcEEEcCEEEEccC
Q 008915 218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (549)
Q Consensus 218 ~G~~v~~~t~v~~i~~~~dgv~V~~~dG~~i~ArlVI~ADG 258 (549)
.+..+..++.+..+...++.+.|++++|+.+++|.+|.+..
T Consensus 223 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~ 263 (347)
T d1b5qa1 223 VDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSAS 263 (347)
T ss_dssp CCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSC
T ss_pred cccccccccccccccccCccEEEEECCCCEEEcCEEEeecC
Confidence 35688899999999998889999998898899998886653
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.67 E-value=0.42 Score=44.50 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=26.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|++.+|..
T Consensus 8 alVTGas~GIG~aia~~la~~Ga~V~l~~r~~ 39 (272)
T d1xkqa_ 8 VIITGSSNGIGRTTAILFAQEGANVTITGRSS 39 (272)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 677784 789999999999999999999864
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=81.51 E-value=0.51 Score=40.17 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=26.9
Q ss_pred EEEEc-chHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|-||| |-+|...|..|+++|++|.+.||.+
T Consensus 3 IgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~ 33 (161)
T d1vpda2 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 33 (161)
T ss_dssp EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 77999 6689999999999999999998754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.47 E-value=0.45 Score=43.89 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=26.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|.+.+|..
T Consensus 9 alITGas~GIG~aia~~la~~Ga~V~~~~~~~ 40 (253)
T d1hxha_ 9 ALVTGGASGVGLEVVKLLLGEGAKVAFSDINE 40 (253)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 666685 789999999999999999999754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.45 E-value=0.56 Score=39.83 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=24.4
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCcEEEEccCC
Q 008915 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
.|+|+| |++|++++..+...|.+|.++|+.+
T Consensus 30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence 388889 5679887766667799999998754
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=81.29 E-value=0.72 Score=38.67 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=27.1
Q ss_pred EEEEcc-hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG-g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
+||||. ..|..++..|.++|.+|.+||..+
T Consensus 6 iII~G~g~~g~~l~~~L~~~~~~v~vId~d~ 36 (153)
T d1id1a_ 6 FIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 999995 579999999999999999999765
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=81.26 E-value=0.45 Score=43.80 Aligned_cols=30 Identities=37% Similarity=0.633 Sum_probs=26.1
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|++.|.+|++.+|..
T Consensus 9 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 40 (251)
T d1zk4a1 9 AIITGGTLGIGLAIATKFVEEGAKVMITGRHS 40 (251)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 666684 789999999999999999999864
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.20 E-value=0.48 Score=43.24 Aligned_cols=32 Identities=38% Similarity=0.612 Sum_probs=28.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
++|.|| |+|..+|..|++.|.+|.+.+|....
T Consensus 10 ~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~ 43 (237)
T d1uzma1 10 VLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA 43 (237)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence 777785 78999999999999999999997653
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=81.20 E-value=0.86 Score=41.83 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=30.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCCCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~~~ 144 (549)
.+|+||||| +|+++|..|+++|++|+|+|+.+.+
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~ 65 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP 65 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 589999976 5999999999999999999998754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=81.06 E-value=0.69 Score=36.88 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=27.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCcEEEEccCC
Q 008915 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
--|+||||| +|..-|..|.+.|.+|.+++...
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 359999976 69999999999999999997543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.03 E-value=0.46 Score=44.33 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=26.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|++.|.+|++.+|..
T Consensus 7 alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 38 (274)
T d1xhla_ 7 VIITGSSNGIGRSAAVIFAKEGAQVTITGRNE 38 (274)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 677784 789999999999999999999864
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.98 E-value=0.46 Score=43.96 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=26.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|.+++|..
T Consensus 11 alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~ 42 (259)
T d1xq1a_ 11 VLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE 42 (259)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 677784 789999999999999999999864
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=80.78 E-value=0.64 Score=42.80 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=26.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.++.|..
T Consensus 8 vlITGgs~GIG~~~A~~la~~G~~vii~~r~~ 39 (254)
T d1sbya1 8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRV 39 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred EEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 788885 789999999999999999997664
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=80.76 E-value=0.51 Score=43.18 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=26.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|.++|..|+++|.+|++.+|..
T Consensus 7 alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~ 38 (243)
T d1q7ba_ 7 ALVTGASRGIGRAIAETLAARGAKVIGTATSE 38 (243)
T ss_dssp EEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 566684 789999999999999999999864
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=80.68 E-value=0.66 Score=42.81 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=27.1
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
|+|.|| |+|..+|..|+++|.+|.+.+|..
T Consensus 9 alITGas~GIG~aia~~la~~G~~V~i~~r~~ 40 (258)
T d1ae1a_ 9 ALVTGGSKGIGYAIVEELAGLGARVYTCSRNE 40 (258)
T ss_dssp EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 788895 789999999999999999999864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.60 E-value=0.61 Score=39.86 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=23.6
Q ss_pred EEEEc-chHHHHHHHHHHhCCCcEEEEccCCC
Q 008915 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (549)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LAr~GlrVlLIEr~~~ 143 (549)
|+|+| |++|.+++..+...|.+|.++++++.
T Consensus 31 vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~ 62 (168)
T d1piwa2 31 VGIVGLGGIGSMGTLISKAMGAETYVISRSSR 62 (168)
T ss_dssp EEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred EEEECCCCcchhHHHHhhhccccccccccchh
Confidence 88899 56788766555456999999998653
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=80.60 E-value=0.51 Score=43.74 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=26.3
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|.+|++.+|..
T Consensus 10 alITGas~GIG~aia~~la~~G~~Vv~~~r~~ 41 (261)
T d1geea_ 10 VVITGSSTGLGKSMAIRFATEKAKVVVNYRSK 41 (261)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 666684 789999999999999999999864
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.52 E-value=0.51 Score=43.06 Aligned_cols=30 Identities=33% Similarity=0.604 Sum_probs=25.9
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
+||-|| |+|.++|..|+++|.+|++.+|..
T Consensus 4 AlVTGas~GIG~aia~~la~~G~~Vvi~~r~~ 35 (266)
T d1mxha_ 4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHS 35 (266)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 356684 799999999999999999999874
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.48 E-value=0.5 Score=39.73 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=25.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCcEEEEccC
Q 008915 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (549)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LAr~GlrVlLIEr~ 141 (549)
-|+||||| +|..-|..|.+.|.+|.||...
T Consensus 15 rvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 15 RILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp EEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 48999976 6999999999999999999654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=80.26 E-value=0.66 Score=42.72 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=26.7
Q ss_pred EEEEc--c--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCG--G--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVG--G--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.| | |+|.++|..|+++|.+|++++|+.
T Consensus 8 alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~ 41 (274)
T d2pd4a1 8 GLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE 41 (274)
T ss_dssp EEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred EEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 78888 4 689999999999999999999864
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.25 E-value=0.49 Score=43.67 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=26.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|++.|.+|++.+|..
T Consensus 14 alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 45 (255)
T d1fmca_ 14 AIITGAGAGIGKEIAITFATAGASVVVSDINA 45 (255)
T ss_dssp EEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 666684 789999999999999999999854
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=80.08 E-value=0.72 Score=42.05 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=26.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCcEEEEccCC
Q 008915 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (549)
Q Consensus 113 VIIVGG--g~G~~~Aa~LAr~GlrVlLIEr~~ 142 (549)
++|.|| |+|..+|..|+++|++|.+.+|..
T Consensus 8 alItGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (241)
T d2a4ka1 8 ILVTGAASGIGRAALDLFAREGASLVAVDREE 39 (241)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 677785 689999999999999999999764
|