Citrus Sinensis ID: 008918

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
MTDPSDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPSTTTASGGKRPASINGSGNTASKKGRGSGGLQNQLVNRALEGISRGGRGGIRGRGRGWGARGRGRGYR
ccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHcccccHHHHHHHHHHHHHcHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHcccEEEcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHHcEHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MTDPSDEAKQIEKLYEFGERLNeakdksqnvkDYEGIIEAAKTSLKAKQLAAQLIPRFFkffpdlssrAVDAHLDLIEEEELGVRVQAirglplfckdtpeYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHigsvdepstdeFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLslfgekapTERMKELIGIIEgqadldaqfnvsdadhIDRLISCLYMALpfflrgasgskFLNYLNKHiipvfdklpEERKLDLLKALAeispyttpqdsrqiLPSVAVLLKYMplrktggeemnFTYVECLLYTFHhlahkapnatnslcgykivtgqpsdrlgedfsDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKqntttglrtcnnilamskplhsktpsfigdksvnlswkeatkpsvpstttasggkrpasingsgntaskkgrgsgglqNQLVNRALEgisrggrggirgrgrgwgargrgrgyr
mtdpsdeakQIEKLYEFGErlneakdksqnvkDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKhigsvdepstdeFIREKVLSFIRDKvfplkaellkpqeeMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAeispyttpqdsrqilPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKtdeakekiktqkqntttglrtcNNILAMSKPLHSKTPSFIGDKSVNLswkeatkpsvpstttasggkrpasingsgntaskkgrgsgglqNQLVNRAlegisrggrggirgrgrgwgargrgrgyr
MTDPSDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPSTTTASGGKRPASINGSGNTASKKGRGSGGLQNQLVNRALEGISrggrggirgrgrgwgargrgrgyr
*********************************YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKP***MERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTR*****************************************TCNNIL****************************************************************************************************
************KLYEFGERL***********DYEGIIEA*****KAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDE**T**FIREKVLSFIRDKVF************MERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLT****************************TTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSW*****************************************************************************
********KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWK*******************ASINGS************GLQNQLVNRALEGISRGGRGGIRGRGR************
*****DEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEA**************************************************************************
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MTDPSDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPSTTTASGGKRPASINGSGNTASKKGRGSGGLQNQLVNRALEGISRGGRGGIRGRGRGWGARGRGRGYR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query549 2.2.26 [Sep-21-2011]
Q5ZMW3523 Apoptosis inhibitor 5 OS= yes no 0.805 0.845 0.341 5e-59
Q5R644504 Apoptosis inhibitor 5 OS= yes no 0.854 0.930 0.334 4e-58
Q9BZZ5524 Apoptosis inhibitor 5 OS= yes no 0.832 0.872 0.333 4e-58
O35841504 Apoptosis inhibitor 5 OS= yes no 0.854 0.930 0.332 6e-58
Q6DDM4524 Apoptosis inhibitor 5-A O N/A no 0.808 0.847 0.324 2e-55
Q7ZY79523 Apoptosis inhibitor 5-B O N/A no 0.839 0.881 0.321 1e-54
Q9V431536 Apoptosis inhibitor 5 hom yes no 0.819 0.839 0.307 1e-50
Q54CL0606 Apoptosis inhibitor 5 hom yes no 0.712 0.645 0.265 1e-31
>sp|Q5ZMW3|API5_CHICK Apoptosis inhibitor 5 OS=Gallus gallus GN=API5 PE=2 SV=1 Back     alignment and function desciption
 Score =  229 bits (583), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 259/515 (50%), Gaps = 73/515 (14%)

Query: 11  IEKLYEFGERLNEAKDKSQNVKD-YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA 69
           +E+LY     L +A + +   KD Y+ I++  K   K K+LAAQ IP+FFK FP+L+  A
Sbjct: 4   VEELYRNYGILADATETAGQHKDAYQVILDGVKGGAKEKRLAAQFIPKFFKHFPELADSA 63

Query: 70  VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129
           ++A LDL E+E++ +R QAI+ LP F   T + L ++ DIL QLL +++  E + V+ AL
Sbjct: 64  INAQLDLCEDEDVSIRRQAIKELPQFA--TGDNLPRVADILTQLLQSDDSAEFNLVNNAL 121

Query: 130 MSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH 189
           +S+ + D K +L  LF  I        ++ +RE+ + F+  K+  L  E+L   +E+E  
Sbjct: 122 LSIFKMDAKGTLGGLFSQIL-----QGEDIVRERAIKFLSTKLKTLPEEVLT--KEVEEF 174

Query: 190 ITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSD 249
           I    KK LEDVTG EF +FM  L  L      +  +++ EL+     QADL+  FN SD
Sbjct: 175 ILAESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVA---EQADLEQTFNPSD 231

Query: 250 ADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL--PEER---KLDLLKALA 304
            D +DRL+ C   A+P F +    +KF+ Y  +H++P    L  P E    +L++LK LA
Sbjct: 232 PDCVDRLLQCTRQAVPLFSKNVHSTKFVTYFCEHVLPNLSALTTPVEGLDIQLEVLKLLA 291

Query: 305 EISPYTTPQDSRQ--ILPSVAVLLKYMPL--------RKTGGEE--MNFTYVECLLYTFH 352
           E+S +    +  +  +      LL+YMPL           GGEE  + F+YVECLLY+FH
Sbjct: 292 EMSSFCGDMEKLESNLKKLFDKLLEYMPLPPEEAENGENAGGEEPKLQFSYVECLLYSFH 351

Query: 353 HLAHKAPN-ATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQG 411
            L  K P+  T  L   K+                 KDF  RL       +  +++L   
Sbjct: 352 QLGRKLPDFLTAKLNAEKL-----------------KDFKIRLQYFARGLQVYIRQLR-- 392

Query: 412 LADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLS 471
           LA   K   A KT+E K K+          L+  NNI  + K L    PS+    +V LS
Sbjct: 393 LALQGKTGEALKTEENKIKV--------VALKITNNINVLIKDLFHIPPSY--KSTVTLS 442

Query: 472 WK-------------EATKPSVPSTTTASGGKRPA 493
           WK             E T  S P    ++G KR A
Sbjct: 443 WKPVQKADANQKRTSEDTTSSSPPKKASAGPKRDA 477
Antiapoptotic factor that may have a role in protein assembly.
Gallus gallus (taxid: 9031)
>sp|Q5R644|API5_PONAB Apoptosis inhibitor 5 OS=Pongo abelii GN=API5 PE=2 SV=1 Back     alignment and function description
>sp|Q9BZZ5|API5_HUMAN Apoptosis inhibitor 5 OS=Homo sapiens GN=API5 PE=1 SV=3 Back     alignment and function description
>sp|O35841|API5_MOUSE Apoptosis inhibitor 5 OS=Mus musculus GN=Api5 PE=2 SV=2 Back     alignment and function description
>sp|Q6DDM4|API5A_XENLA Apoptosis inhibitor 5-A OS=Xenopus laevis GN=api5-a PE=2 SV=1 Back     alignment and function description
>sp|Q7ZY79|API5B_XENLA Apoptosis inhibitor 5-B OS=Xenopus laevis GN=api5-b PE=2 SV=1 Back     alignment and function description
>sp|Q9V431|API5_DROME Apoptosis inhibitor 5 homolog OS=Drosophila melanogaster GN=Aac11 PE=1 SV=1 Back     alignment and function description
>sp|Q54CL0|API5_DICDI Apoptosis inhibitor 5 homolog OS=Dictyostelium discoideum GN=api5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query549
359483518550 PREDICTED: apoptosis inhibitor 5-like [V 0.954 0.952 0.853 0.0
449433776554 PREDICTED: apoptosis inhibitor 5-like [C 0.954 0.945 0.842 0.0
224116312543 predicted protein [Populus trichocarpa] 0.945 0.955 0.849 0.0
449519826557 PREDICTED: apoptosis inhibitor 5-like [C 0.954 0.940 0.835 0.0
224079137539 predicted protein [Populus trichocarpa] 0.941 0.959 0.846 0.0
255563042554 Apoptosis inhibitor, putative [Ricinus c 0.952 0.944 0.826 0.0
225461593564 PREDICTED: apoptosis inhibitor 5 [Vitis 0.948 0.923 0.793 0.0
356521430550 PREDICTED: apoptosis inhibitor 5-like [G 0.950 0.949 0.817 0.0
356548640551 PREDICTED: apoptosis inhibitor 5-like [G 0.950 0.947 0.814 0.0
18403429553 Apoptosis inhibitory protein 5 (API5) [A 0.941 0.934 0.774 0.0
>gi|359483518|ref|XP_002272702.2| PREDICTED: apoptosis inhibitor 5-like [Vitis vinifera] gi|297740462|emb|CBI30644.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/527 (85%), Positives = 487/527 (92%), Gaps = 3/527 (0%)

Query: 1   MTDPSDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFK 60
           M D S++AK IEKLYE+GERLNEAKDKSQNV+DY GII AAK S+KAKQLAAQLIPRFFK
Sbjct: 1   MADASEDAKDIEKLYEYGERLNEAKDKSQNVEDYRGIIAAAKGSIKAKQLAAQLIPRFFK 60

Query: 61  FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIV 120
           FFPDLS  AVD+HLDL EEEELGVRVQAIRGLPLFCKDTPEY+SKIVDIL QLL AEE V
Sbjct: 61  FFPDLSDAAVDSHLDLCEEEELGVRVQAIRGLPLFCKDTPEYVSKIVDILAQLLTAEENV 120

Query: 121 ERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELL 180
           ERDAVHKAL+SLLRQDVKASLT LFKHI +VD+PSTDE +REKVL+FIRDKVFPLKAELL
Sbjct: 121 ERDAVHKALLSLLRQDVKASLTGLFKHIMTVDDPSTDENLREKVLNFIRDKVFPLKAELL 180

Query: 181 KPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQAD 240
           KPQE+MERHIT+LIKKSLEDVTGAEF+MFMDFL+SL+LFGEKAP ER++ELI IIEGQAD
Sbjct: 181 KPQEQMERHITNLIKKSLEDVTGAEFKMFMDFLRSLTLFGEKAPPERVQELIEIIEGQAD 240

Query: 241 LDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLL 300
           LDAQFNVSD DHIDRLISCLYMALPFF+RGAS SKFLNYLNKHIIPVFDKLPEERKLDLL
Sbjct: 241 LDAQFNVSDGDHIDRLISCLYMALPFFVRGASNSKFLNYLNKHIIPVFDKLPEERKLDLL 300

Query: 301 KALAEISPYTTPQDSRQILPSVAVLLK-YMPLRKTGGEEMNFTYVECLLYTFHHLAHKAP 359
           K LAE SPY+ PQDSRQILPSV  LLK YMP RKTG EE NFTYVECLLYTFHHLA+KAP
Sbjct: 301 KNLAESSPYSAPQDSRQILPSVVQLLKKYMPRRKTG-EETNFTYVECLLYTFHHLAYKAP 359

Query: 360 NATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEM 419
           NATNSLCGYKIVTGQPSDRLGEDFS+ YKDFTERLT VE+L RATMKKLTQG+A+HNK M
Sbjct: 360 NATNSLCGYKIVTGQPSDRLGEDFSEYYKDFTERLTHVEELARATMKKLTQGMAEHNKAM 419

Query: 420 AAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPS 479
           AAAK+DEAK+ IKTQKQNTTTGLRTCNNILAM++PLHSK+PSFIGDK +NLSWKEATKPS
Sbjct: 420 AAAKSDEAKDNIKTQKQNTTTGLRTCNNILAMTQPLHSKSPSFIGDKRINLSWKEATKPS 479

Query: 480 VPSTTTASGGKRPAS-INGSGNTASKKGRGSGGLQNQLVNRALEGIS 525
           VPST  A+GGKRPAS  NG+ N A+KKGRG+GGLQNQLVNRALEG+S
Sbjct: 480 VPSTAMAAGGKRPASTTNGASNAAAKKGRGAGGLQNQLVNRALEGLS 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449433776|ref|XP_004134673.1| PREDICTED: apoptosis inhibitor 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224116312|ref|XP_002331951.1| predicted protein [Populus trichocarpa] gi|222874728|gb|EEF11859.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449519826|ref|XP_004166935.1| PREDICTED: apoptosis inhibitor 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224079137|ref|XP_002305763.1| predicted protein [Populus trichocarpa] gi|222848727|gb|EEE86274.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255563042|ref|XP_002522525.1| Apoptosis inhibitor, putative [Ricinus communis] gi|223538216|gb|EEF39825.1| Apoptosis inhibitor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225461593|ref|XP_002282903.1| PREDICTED: apoptosis inhibitor 5 [Vitis vinifera] gi|302142932|emb|CBI20227.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521430|ref|XP_003529359.1| PREDICTED: apoptosis inhibitor 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356548640|ref|XP_003542708.1| PREDICTED: apoptosis inhibitor 5-like [Glycine max] Back     alignment and taxonomy information
>gi|18403429|ref|NP_565777.1| Apoptosis inhibitory protein 5 (API5) [Arabidopsis thaliana] gi|20196906|gb|AAB67622.2| expressed protein [Arabidopsis thaliana] gi|21553359|gb|AAM62452.1| unknown [Arabidopsis thaliana] gi|25083323|gb|AAN72062.1| expressed protein [Arabidopsis thaliana] gi|34098899|gb|AAQ56832.1| At2g34040 [Arabidopsis thaliana] gi|330253815|gb|AEC08909.1| Apoptosis inhibitory protein 5 (API5) [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query549
TAIR|locus:2055481553 AT2G34040 [Arabidopsis thalian 0.941 0.934 0.784 4.6e-215
TAIR|locus:2029994556 AT1G29030 "AT1G29030" [Arabido 0.936 0.924 0.738 2.8e-201
UNIPROTKB|Q5ZMW3523 API5 "Apoptosis inhibitor 5" [ 0.881 0.925 0.323 8.9e-54
UNIPROTKB|E1BEI0482 API5 "Uncharacterized protein" 0.830 0.946 0.335 8e-53
UNIPROTKB|Q5R644504 API5 "Apoptosis inhibitor 5" [ 0.868 0.946 0.326 1.3e-52
UNIPROTKB|G3V1C3510 API5 "Apoptosis inhibitor 5" [ 0.868 0.935 0.325 4.4e-52
MGI|MGI:1888993504 Api5 "apoptosis inhibitor 5" [ 0.868 0.946 0.326 5.6e-52
TAIR|locus:2090699 805 AT3G19515 "AT3G19515" [Arabido 0.408 0.278 0.502 5.7e-52
UNIPROTKB|Q9BZZ5524 API5 "Apoptosis inhibitor 5" [ 0.821 0.860 0.328 7.2e-52
UNIPROTKB|E2RHB3524 API5 "Uncharacterized protein" 0.821 0.860 0.328 9.2e-52
TAIR|locus:2055481 AT2G34040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2078 (736.6 bits), Expect = 4.6e-215, P = 4.6e-215
 Identities = 411/524 (78%), Positives = 458/524 (87%)

Query:     5 SDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPD 64
             S+E +QIEKLYEF ERLN +KDKSQNV+DYEGII+ +KTS+KAKQLA+QLIPR+FKFFP 
Sbjct:     6 SEEVQQIEKLYEFSERLNASKDKSQNVEDYEGIIKMSKTSMKAKQLASQLIPRYFKFFPS 65

Query:    65 LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDA 124
             LS+ A DAH+D I++ +LGVRVQAIRGLPLFCKDTP+ LSKIVD+LVQLL  EE VERDA
Sbjct:    66 LSTEAFDAHMDCIDDGDLGVRVQAIRGLPLFCKDTPDILSKIVDVLVQLLNTEEPVERDA 125

Query:   125 VHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQE 184
             VHKALMSLLRQD KAS TALF H G    P+TD+ IREKVL+FIRDKV PLK ELLKPQE
Sbjct:   126 VHKALMSLLRQDPKASSTALFTHAGVT--PTTDDQIREKVLNFIRDKVIPLKGELLKPQE 183

Query:   185 EMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQ 244
             EMERHITDLIK+SLEDVTG EF+MFMDFL SLS+FG KAP ERM+EL+ IIEGQADL+AQ
Sbjct:   184 EMERHITDLIKQSLEDVTGGEFKMFMDFLTSLSIFGGKAPPERMQELVEIIEGQADLNAQ 243

Query:   245 FNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALA 304
             F  SD DHIDRLISCL +ALPFF RGA  S+FL YLNKHIIPVFDKLPEERKLDLLKALA
Sbjct:   244 FEFSDTDHIDRLISCLQLALPFFARGAPSSRFLIYLNKHIIPVFDKLPEERKLDLLKALA 303

Query:   305 EISPYTTPQDSRQILPSVAVLLK-YMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATN 363
             +ISPYTT Q++RQ+LPS+  LLK YMP RKTG EEMNFTYVECLLY FHHLAHK PNATN
Sbjct:   304 DISPYTTAQEARQLLPSIVELLKIYMPARKTG-EEMNFTYVECLLYAFHHLAHKVPNATN 362

Query:   364 SLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAK 423
             SLCGYKIVTGQPSDRLGEDFS+  KDFTERLT VEDLT+ATMKKLTQG+ +HNK M+AAK
Sbjct:   363 SLCGYKIVTGQPSDRLGEDFSELNKDFTERLTIVEDLTKATMKKLTQGMTEHNKAMSAAK 422

Query:   424 TDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPST 483
             TDE K  IKT++QNTTTGLRTCNNILAM+KPLH+K P FIGD ++NLSWKEATKP + ST
Sbjct:   423 TDEEKASIKTKRQNTTTGLRTCNNILAMTKPLHAKVPPFIGDTNLNLSWKEATKP-LAST 481

Query:   484 TTASGGKRPA-SINGSGNT-ASKKGRGSGGLQNQLVNRALEGIS 525
             TT  GGKRPA S NGSGN  A+KKGRGSG +QNQLVN+A EGIS
Sbjct:   482 TTTIGGKRPANSNNGSGNNVAAKKGRGSGTMQNQLVNKAFEGIS 525
GO:0005634 "nucleus" evidence=ISM
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2029994 AT1G29030 "AT1G29030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMW3 API5 "Apoptosis inhibitor 5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEI0 API5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R644 API5 "Apoptosis inhibitor 5" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|G3V1C3 API5 "Apoptosis inhibitor 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1888993 Api5 "apoptosis inhibitor 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2090699 AT3G19515 "AT3G19515" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BZZ5 API5 "Apoptosis inhibitor 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHB3 API5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9BZZ5API5_HUMANNo assigned EC number0.33390.83240.8721yesno
Q5ZMW3API5_CHICKNo assigned EC number0.34170.80510.8451yesno
Q5R644API5_PONABNo assigned EC number0.33450.85420.9305yesno
Q9V431API5_DROMENo assigned EC number0.30750.81960.8395yesno
O35841API5_MOUSENo assigned EC number0.33270.85420.9305yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.187.122.1
hypothetical protein (543 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
pfam05918543 pfam05918, API5, Apoptosis inhibitory protein 5 (A 0.0
>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5) Back     alignment and domain information 
 Score =  767 bits (1981), Expect = 0.0
 Identities = 355/545 (65%), Positives = 412/545 (75%), Gaps = 13/545 (2%)

Query: 10  QIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA 69
            IEKLYEF ERL+E+ DKSQNV DYEGII+A+KT+ K KQLA+QLIPR+FKFFP L++ A
Sbjct: 1   NIEKLYEFYERLSESGDKSQNVDDYEGIIKASKTTSKEKQLASQLIPRYFKFFPSLATEA 60

Query: 70  VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129
            DA  DL ++++ GVRVQAIRGLPLFCKDTP+  SKI D+LVQLL  EE VERDAVHKAL
Sbjct: 61  FDAQFDLCDDDDTGVRVQAIRGLPLFCKDTPDATSKIGDVLVQLLNTEEPVERDAVHKAL 120

Query: 130 MSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH 189
           MSL+RQD KAS+TALF+HI +    +TDE IREKVL FIRDKV PLK ELLKPQ+EMERH
Sbjct: 121 MSLIRQDTKASITALFQHISAT--LTTDEQIREKVLKFIRDKVLPLKGELLKPQKEMERH 178

Query: 190 ITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSD 249
           ITDLIKKSL+DVTG EF MFMDFL SLS+FG KAP ERM+EL+ IIEGQADL+  F   D
Sbjct: 179 ITDLIKKSLQDVTGDEFHMFMDFLGSLSIFGGKAPIERMQELVEIIEGQADLNNTFIAVD 238

Query: 250 ADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPY 309
            + ++R I C   A P+F RGA  S FL YLNK I+P FD LPEERKL LLKALAE+SPY
Sbjct: 239 DEVVERFIQCASAAAPYFSRGAPSSAFLAYLNKKILPTFDMLPEERKLRLLKALAEMSPY 298

Query: 310 TTPQDSRQILPSVA-VLLKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGY 368
           TT QD+RQ LPS+  +LL+YMPL  T      F++ ECLLY  H L  K PNATNSLCGY
Sbjct: 299 TTAQDARQRLPSIVNLLLEYMPLGDTP-PSFQFSHAECLLYALHTLGKKHPNATNSLCGY 357

Query: 369 KIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAK 428
           KIVTGQPSDRLGEDFS+  KDFTERLT VEDLT+ATMKKLTQG+++H+K M+ AKTDE K
Sbjct: 358 KIVTGQPSDRLGEDFSEKNKDFTERLTYVEDLTKATMKKLTQGMSEHSKAMSTAKTDEEK 417

Query: 429 EKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPSTTTASG 488
           E++KT++Q TTTGLRTCNNILAM+K L    P F  D ++ LSW       +       G
Sbjct: 418 EELKTKEQLTTTGLRTCNNILAMTKDLFHSPPIFKHDLAIVLSWIVPKNNKL-GKPITFG 476

Query: 489 GKRPASINGSG-NTASKKGRGSGGLQNQLVNRALEGISR-GGRGGIRGRGRGWGAR---G 543
           GKRPA  NG G N  +KK R S   Q Q VN++ EGIS+ G   G RGR RG G     G
Sbjct: 477 GKRPA--NGKGNNVPAKKSRPS-NDQKQYVNKSGEGISKVGQSYGGRGRTRGRGRGGGGG 533

Query: 544 RGRGY 548
           RGRGY
Sbjct: 534 RGRGY 538

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 549
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 100.0
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 100.0
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 98.91
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 98.86
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.97
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.83
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.7
PTZ00429 746 beta-adaptin; Provisional 97.63
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 96.85
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.46
PF1036392 DUF2435: Protein of unknown function (DUF2435) 96.28
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 96.22
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.14
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.07
PRK09687280 putative lyase; Provisional 96.05
PRK09687280 putative lyase; Provisional 96.05
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 96.0
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.98
PTZ00429 746 beta-adaptin; Provisional 95.98
KOG22741005 consensus Predicted importin 9 [Intracellular traf 95.92
KOG3973465 consensus Uncharacterized conserved glycine-rich p 95.88
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.39
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 94.79
KOG09211282 consensus Dosage compensation complex, subunit MLE 94.42
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 94.39
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 94.32
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 93.17
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 92.21
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 92.2
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 91.71
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 91.1
KOG2256661 consensus Predicted protein involved in nuclear ex 90.74
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 90.18
KOG3973465 consensus Uncharacterized conserved glycine-rich p 89.97
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 89.52
KOG2973353 consensus Uncharacterized conserved protein [Funct 89.44
PF14500262 MMS19_N: Dos2-interacting transcription regulator 89.41
KOG0212675 consensus Uncharacterized conserved protein [Funct 89.4
COG5096 757 Vesicle coat complex, various subunits [Intracellu 89.24
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 88.83
KOG3172119 consensus Small nuclear ribonucleoprotein Sm D3 [R 88.71
COG5096 757 Vesicle coat complex, various subunits [Intracellu 88.58
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 88.43
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 87.94
smart00638574 LPD_N Lipoprotein N-terminal Domain. 87.42
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 87.37
PF05804708 KAP: Kinesin-associated protein (KAP) 87.24
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 87.08
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 86.64
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 86.48
cd06561197 AlkD_like A new structural DNA glycosylase. This d 86.19
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 86.01
TIGR00207338 fliG flagellar motor switch protein FliG. The fliG 85.49
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 85.03
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 84.5
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 84.36
KOG2259823 consensus Uncharacterized conserved protein [Funct 84.05
KOG2956516 consensus CLIP-associating protein [General functi 83.96
KOG2945365 consensus Predicted RNA-binding protein [General f 83.85
KOG2259 823 consensus Uncharacterized conserved protein [Funct 83.38
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 82.63
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 81.1
KOG3428109 consensus Small nuclear ribonucleoprotein SMD1 and 80.81
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information 
Probab=100.00  E-value=3e-163  Score=1319.29  Aligned_cols=533  Identities=56%  Similarity=0.883  Sum_probs=352.8

Q ss_pred             HHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHHHHh
Q 008918           10 QIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAI   89 (549)
Q Consensus        10 ~ie~LY~~~~~L~~akd~~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAI   89 (549)
                      +||+||++||||++|+|+++|+++|++||+++||++++|+|||||||||||+||+|+++|||||+|||||+|++||+|||
T Consensus         1 ~ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~ai   80 (556)
T PF05918_consen    1 NIEKLYENYEILADAKDKSQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAI   80 (556)
T ss_dssp             -HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred             CHHHHHHHHhHhhcCCCcccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH
Q 008918           90 RGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR  169 (549)
Q Consensus        90 k~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~Fl~  169 (549)
                      |+||.|||+||||++||||||+||||+||++|+++|++||++||++||++||++||+||.++  +++||.+|||+|+||+
T Consensus        81 k~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~--~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   81 KGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS--KSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----HS-HHHHHHHHHHHH
T ss_pred             HhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--ccCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999853  4678999999999999


Q ss_pred             hhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCC-CchhHHHHHHHHHHHhhhccccCCCC
Q 008918          170 DKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEK-APTERMKELIGIIEGQADLDAQFNVS  248 (549)
Q Consensus       170 ~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~-~~~gr~qeLv~~i~eqa~Ld~~f~~s  248 (549)
                      +||+++++++++|++|+|++|+++|+|+|+|||++||++||+||++|++|+.. ++.|| |+||++|.+||+|+++|+++
T Consensus       159 ~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~-qeLv~ii~eQa~Ld~~f~~s  237 (556)
T PF05918_consen  159 EKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGR-QELVDIIEEQADLDQPFDPS  237 (556)
T ss_dssp             HHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHH-HHHHHHHHHHHTTTS---SS
T ss_pred             HHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHH-HHHHHHHHHHhccCCCCCCc
Confidence            99999999999999999999999999999999999999999999999998644 45565 99999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCChhhhhhhHHHHHHHh-h
Q 008918          249 DADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLL-K  327 (549)
Q Consensus       249 D~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~~kl~lLK~lAE~s~~~~~~da~~~l~~i~~~L-~  327 (549)
                      |+++|||+|+|+++|+|||+++++|++||+|||++|||+|++||++.|++|||+|||+||||+++|+++++|+||++| +
T Consensus       238 D~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~  317 (556)
T PF05918_consen  238 DPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKK  317 (556)
T ss_dssp             SHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             hcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccccccccCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 008918          328 YMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKK  407 (549)
Q Consensus       328 ymP~~~~~~~~l~fS~vEcLLyafh~L~~K~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kdF~~RLqyla~~~q~yikk  407 (549)
                      |||.+.+ +|++||||||||||+||+||+|+|++++++||||+||||||||+|+|++++++||++||+||++++|+|||+
T Consensus       318 ymP~~~~-~~~l~fs~vEcLL~afh~La~k~p~~~~~lCgyk~vtgQpsd~~~~~~~~~~kdf~~RL~yl~~~~q~yikk  396 (556)
T PF05918_consen  318 YMPSKKT-EPKLQFSYVECLLYAFHQLARKSPNSLNFLCGYKIVTGQPSDRYGEDDAEKLKDFRERLQYLARGTQAYIKK  396 (556)
T ss_dssp             TS-----------HHHHHHHHHHHHHHHTT-THHHH---------------------TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCC-CCcccchHhhHHHHHHHHHhhhCcchhhhHhhhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998764 899999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             HHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCCcccccccccCCCCCC------
Q 008918          408 LTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVP------  481 (549)
Q Consensus       408 L~~~l~~~~K~~~~~k~denk~k~~~~~q~~~~aL~~~~NI~~li~~L~~~pPsf~~~~~itlSW~~~~k~~~~------  481 (549)
                      |+++|.+|+|+++++|+|+++.++++++|++++|||||+||++||++|||+||+|+++.+||+||++++++...      
T Consensus       397 l~~~l~~~~k~~~~~k~~k~~~~lk~~~q~~~~aLkt~~NI~~lik~L~~~pPsf~~~~~itlSWk~~~~~~~~k~~~~~  476 (556)
T PF05918_consen  397 LKQALSEHNKAMSAAKTDKTKAELKTEEQIKVTALKTTNNILALIKDLFHNPPSFKSTKNITLSWKEAKKPKLGKKHQPI  476 (556)
T ss_dssp             HHHHH-----------TT--CCHHCSHHHHHHHHHHHHHHHHHHHCC----------------TTS--------------
T ss_pred             HHHHhhhhcccccccCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCcccccccccceeeeeccchhhccccCCc
Confidence            99999999999999999999999999999999999999999999999999999999955699999998863211      


Q ss_pred             ------CCcccCCCCCCCCCCCCC-CcccccCCCCCCcchhhhhhhhcCCCCCC-----CCCCCCcccC-CCC--CCCCC
Q 008918          482 ------STTTASGGKRPASINGSG-NTASKKGRGSGGLQNQLVNRALEGISRGG-----RGGIRGRGRG-WGA--RGRGR  546 (549)
Q Consensus       482 ------~~~~~~~~~r~~~~~g~~-~~~~~~gr~~~~~~~~~~~~~~~g~~~~~-----~~g~rgrgr~-~g~--rgr~~  546 (549)
                            ++....+|+|++  ||.+ |...++||+++ +||+.++++..|.+++|     |||+|||||| |||  |||||
T Consensus       477 ~~~~~~~~~~~~~~k~~~--~g~~~~~~~k~~~~~~-~~~~y~~p~~k~ss~~~~~~~~~g~gr~rg~~~ggg~grg~~r  553 (556)
T PF05918_consen  477 TFRNNASQQANTGGKRPA--NGKSNNSPAKKGRQQN-MQQQYVPPSGKYSSNGGNSGRGRGGGRGRGRRSGGGRGRGRGR  553 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccCCCc--CCCCCCcccccccchh-hccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Confidence                  233556788886  4433 44668899887 89999999999987444     4566666665 333  66667


Q ss_pred             CCC
Q 008918          547 GYR  549 (549)
Q Consensus       547 ~~~  549 (549)
                      |||
T Consensus       554 ~~~  556 (556)
T PF05918_consen  554 GFW  556 (556)
T ss_dssp             ---
T ss_pred             cCC
Confidence            999

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>TIGR00207 fliG flagellar motor switch protein FliG Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG2945 consensus Predicted RNA-binding protein [General function prediction only] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
3u0r_A507 Helical Repeat Structure Of Apoptosis Inhibitor 5 R 1e-59
3v6a_A474 Helical Repeat Structure Of Apoptosis Inhibitor 5 R 6e-58
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals Protein- Protein Interaction Modules Length = 507 Back     alignment and structure 
Iteration: 1

 Score =  227 bits (578), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 182/544 (33%), Positives = 267/544 (49%), Gaps = 75/544 (13%)
Query: 11  IEKLYEFGERLNEAKDKSQNVKD-YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA 69
           +E+LY     L +A ++    KD Y+ I++  K   K K+LAAQ IP+FFK FP+L+  A
Sbjct: 7   VEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSA 66
Query: 70  VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129
           ++A LDL E+E++ +R QAI+ LP F   T E L ++ DIL QLL  ++  E + V+ AL
Sbjct: 67  INAQLDLCEDEDVSIRRQAIKELPQFA--TGENLPRVADILTQLLQTDDSAEFNLVNNAL 124
Query: 130 MSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH 189
           +S+ + D K +L  LF  I        ++ +RE+ + F+  K+  L  E+L   +E+E  
Sbjct: 125 LSIFKMDAKGTLGGLFSQI-----LQGEDIVRERAIKFLSTKLKTLPDEVLT--KEVEEL 177
Query: 190 ITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSD 249
           I    KK LEDVTG EF +FM  L  L      +  +++ EL+     QADL+  FN SD
Sbjct: 178 ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVA---EQADLEQTFNPSD 234
Query: 250 ADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL--PEER---KLDLLKALA 304
            D +DRL+ C   A+P F +    ++F+ Y  + ++P    L  P E    +L++LK LA
Sbjct: 235 PDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLA 294
Query: 305 EISPYTTPQDS-----RQILPSVAVLLKYMPL--------RKTGGEE--MNFTYVECLLY 349
           E+S +    +      R++      LL+YMPL           G EE  + F+YVECLLY
Sbjct: 295 EMSSFCGDMEKLETNLRKLFDK---LLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLY 351
Query: 350 TFHHLAHKAPN-ATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKL 408
           +FH L  K P+  T  L   K+                 KDF  RL       +  +++L
Sbjct: 352 SFHQLGRKLPDFLTAKLNAEKL-----------------KDFKIRLQYFARGLQVYIRQL 394
Query: 409 TQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSV 468
              LA   K   A KT+E K K+          L+  NNI  + K L    PS+    +V
Sbjct: 395 R--LALQGKTGEALKTEENKIKV--------VALKITNNINVLIKDLFHIPPSY--KSTV 442
Query: 469 NLSWKEATKPSV----PSTTTASGGKRPASINGSGNTASK-----KGRGSGGLQNQLVNR 519
            LSWK   K  +     S  T SG     S  G    A +      G+ S  L N    R
Sbjct: 443 TLSWKPVQKVEIGQKRASEDTTSGSPPKKSSAGPKRDARQIYNPPSGKYSSNLGNFNYER 502
Query: 520 ALEG 523
           +L+G
Sbjct: 503 SLQG 506
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals Protein- Protein Interaction Modules Length = 474 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query549
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 100.0
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.21
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.81
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.81
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.81
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.77
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 97.76
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 97.7
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.68
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.66
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.66
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.61
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.6
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 97.6
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.57
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 97.56
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.55
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.55
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.53
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.5
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.49
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.48
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.46
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.45
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.39
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.38
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.31
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.31
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 97.16
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 97.15
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 97.13
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 97.13
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.96
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 96.95
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 96.87
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.85
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 96.78
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 96.67
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 96.65
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 96.5
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 96.42
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 96.32
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 95.98
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 95.96
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.92
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 95.85
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 95.73
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.72
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 95.67
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 95.54
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 95.42
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 95.36
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 95.29
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 95.22
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 95.17
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 94.94
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 94.66
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 94.42
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 94.02
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 93.72
2x19_B963 Importin-13; nuclear transport, protein transport; 92.93
2db0_A253 253AA long hypothetical protein; heat repeats, hel 92.68
2x1g_F971 Cadmus; transport protein, developmental protein, 92.29
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 92.18
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 92.16
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 91.13
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 91.05
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 90.67
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 90.48
2x1g_F971 Cadmus; transport protein, developmental protein, 90.31
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 90.12
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 90.01
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 89.71
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 89.54
2x19_B963 Importin-13; nuclear transport, protein transport; 88.28
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 84.95
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 82.95
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 82.75
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 81.47
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 80.78
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 80.28
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
Probab=100.00  E-value=3.2e-144  Score=1151.17  Aligned_cols=444  Identities=36%  Similarity=0.596  Sum_probs=406.9

Q ss_pred             hHHHHHHHHHhhhhhhcccc-ccChhhHHHHHHHhcCCHHHHHHHhhhhHHhhccCccchHHHHHHhhhhccccchhHHH
Q 008918            8 AKQIEKLYEFGERLNEAKDK-SQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRV   86 (549)
Q Consensus         8 ~~~ie~LY~~~~~L~~akd~-~~~~~~Y~~Il~~~kg~~k~K~LaaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~   86 (549)
                      .++||+||++||||+||+|+ ++|+++|++||+++||++|+|+|||||||||||+||+|+++|||||+|||||+|++||+
T Consensus         4 ~~~ie~LY~~~~~L~da~dk~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~   83 (507)
T 3u0r_A            4 MPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRR   83 (507)
T ss_dssp             -CCHHHHHHHHHHHHHTGGGGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred             cchHHHHHHHhhHhhhccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHH
Confidence            34699999999999999999 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccccCccchhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhhcCCCCCChHHHHHHHHH
Q 008918           87 QAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLS  166 (549)
Q Consensus        87 qAIk~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~d~k~tL~~lf~qI~~~~e~~~eE~vREr~l~  166 (549)
                      ||||+||.|||+  +|++||||||+||||+||++|+++|+|||++||++||++||++||+||.     .+||.+|||+|+
T Consensus        84 qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~-----~~~e~~Rer~lk  156 (507)
T 3u0r_A           84 QAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL-----QGEDIVRERAIK  156 (507)
T ss_dssp             HHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-----HSCHHHHHHHHH
T ss_pred             HHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHc-----ccchHHHHHHHH
Confidence            999999999999  9999999999999999999999999999999999999999999999999     678999999999


Q ss_pred             HHHhhcccchhhhcCChHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCC
Q 008918          167 FIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFN  246 (549)
Q Consensus       167 Fl~~kl~~l~~e~~~~~eE~Ee~i~~~ikKvL~dVT~~EF~l~m~iL~~l~~~~t~~~~gr~qeLv~~i~eqa~Ld~~f~  246 (549)
                      ||++||++++.+++  ++|+|++|+++|+|+|+|||++||++||+||++|++|++  +.|| |+||+++.+||+|+.+|+
T Consensus       157 Fi~~kl~~l~~~~l--~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t--~~g~-qeLv~ii~eQa~L~~~f~  231 (507)
T 3u0r_A          157 FLSTKLKTLPDEVL--TKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQT--VSGR-QQLVELVAEQADLEQTFN  231 (507)
T ss_dssp             HHHHHGGGSCTTTS--CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSS--HHHH-HHHHHHHHHHHTTTSCCC
T ss_pred             HHHHHHhhcchhhc--cHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccC--chHH-HHHHHHHHHHHhccCCCC
Confidence            99999999999999  799999999999999999999999999999999999985  6677 999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHhhhhhccCCChhhHHHHHHhhhcccCCCCChh-----hhhhHHHHHHHhCCCCC-hhhhhhhHH
Q 008918          247 VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEE-----RKLDLLKALAEISPYTT-PQDSRQILP  320 (549)
Q Consensus       247 ~sD~e~idRli~cl~~Alp~fs~~v~st~f~~y~~~~vlP~l~~l~e~-----~kl~lLK~lAE~s~~~~-~~da~~~l~  320 (549)
                      ++|+|+|||+|+|+++|+||||++++|++||+|||++|||+|++|++.     .||++||+||||||||+ .++++++++
T Consensus       232 ~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~  311 (507)
T 3u0r_A          232 PSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR  311 (507)
T ss_dssp             SSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH
Confidence            999999999999999999999999999999999999999999999763     89999999999999999 677999999


Q ss_pred             HHHHHh-hhcCCCCC----------CCCccchHHHHHHHHHHHHhhhcCchhhhhccccccccCCCCCCCCCChhhhhHH
Q 008918          321 SVAVLL-KYMPLRKT----------GGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKD  389 (549)
Q Consensus       321 ~i~~~L-~ymP~~~~----------~~~~l~fS~vEcLLyafh~L~~K~P~~l~~lcg~k~~Tgqpsd~~geD~~~~~kd  389 (549)
                      +||++| +|||.||+          ++|+|||||||||||+||+||+|+|+|+..                +|++++|||
T Consensus       312 ~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e----------------~~~~~~lkd  375 (507)
T 3u0r_A          312 KLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA----------------KLNAEKLKD  375 (507)
T ss_dssp             HHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHC----------------C--CCTTHH
T ss_pred             HHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc----------------cccHHHHHH
Confidence            999999 99999996          358999999999999999999999999843                256899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCCccc
Q 008918          390 FTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVN  469 (549)
Q Consensus       390 F~~RLqyla~~~q~yikkL~~~l~~~~K~~~~~k~denk~k~~~~~q~~~~aL~~~~NI~~li~~L~~~pPsf~~~~~it  469 (549)
                      ||.|||||+|++|+|||||+++|++  |+++++|+||||+||        +|||||+||++||++|||+||+|++  +||
T Consensus       376 fr~RLqy~ar~~q~yikkL~~~~~~--K~~~~~kteenk~kv--------~alkt~~NI~~likdlfh~pPsFk~--~v~  443 (507)
T 3u0r_A          376 FKIRLQYFARGLQVYIRQLRLALQG--KTGEALKTEENKIKV--------VALKITNNINVLIKDLFHIPPSYKS--TVT  443 (507)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT--CCTTGGGSHHHHHHH--------HHHHHHHHHHHHHHHCC--CCCCCC--CCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc--cchhhhcchHHHHHH--------HHHHHHhhHHHHHHHHhcCCCCcee--eee
Confidence            9999999999999999999999987  999999999999998        7999999999999999999999998  999


Q ss_pred             ccccccCCCCCCCCcccCCCCCCC-CCCCCC
Q 008918          470 LSWKEATKPSVPSTTTASGGKRPA-SINGSG  499 (549)
Q Consensus       470 lSW~~~~k~~~~~~~~~~~~~r~~-~~~g~~  499 (549)
                      +||++++|        ..+|||++ ..+|++
T Consensus       444 lSWk~~~~--------~~~~kr~~~~~~~~~  466 (507)
T 3u0r_A          444 LSWKPVQK--------VEIGQKRASEDTTSG  466 (507)
T ss_dssp             CTTSCC-------------------------
T ss_pred             eeeecccc--------cccCCCCCCccCCCC
Confidence            99998764        34688887 445544
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 549
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 4e-09
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-04
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 40/321 (12%), Positives = 90/321 (28%), Gaps = 25/321 (7%)

Query: 50  LAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-LSKIVD 108
           L  +L     K   D   + V   L L+E++   V+  A++ L        EY +  IVD
Sbjct: 27  LMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD 86

Query: 109 ILVQLLAAEEIVERDAVHKALMSLLRQ---------DVKASLTALFKHIGSVDEPSTDEF 159
            L   + +++   RD     L +++ +                 +   + S      D  
Sbjct: 87  TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 146

Query: 160 IREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLF 219
           ++ + L  + D +      L+     +   +   +      V           + +L   
Sbjct: 147 VQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKR-------TIIALGHL 199

Query: 220 GEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNY 279
                     +LI  +  +  L    ++S      + I+ +       +           
Sbjct: 200 VMSCGNIVFVDLIEHLLSE--LSKNDSMSTTRTYIQCIAAISRQAGHRIG----EYLEKI 253

Query: 280 LNKHIIPVFDKLPEERK--LDLLKALAEISPYTTPQDSRQILPSVAVLLKYMPLRKTGGE 337
           +   +        E R+  +   ++     P         I+      L Y P      E
Sbjct: 254 IPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDE 313

Query: 338 EMNFTYVECLLYTFHHLAHKA 358
           + +   ++             
Sbjct: 314 DEDENAMDADGGDDDDQGSDD 334
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query549
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.28
d1b3ua_588 Constant regulatory domain of protein phosphatase 97.83
d1b3ua_588 Constant regulatory domain of protein phosphatase 97.51
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.29
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.28
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.26
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.13
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 97.11
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 97.1
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 97.08
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 97.0
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.83
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 96.8
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.75
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.66
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 96.48
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.25
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.18
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.92
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 95.72
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.65
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.65
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 95.63
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 95.35
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 95.01
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 94.88
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 94.41
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 94.23
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 94.2
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 93.92
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 92.65
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 92.56
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 90.72
d1wj7a191 Ubiquitin-associated protein 2-like Ubap2l {Mouse 87.15
d1uw4b_248 Regulator of nonsense transcripts 2, UPF2 {Human ( 80.95
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 80.8
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure