Citrus Sinensis ID: 008937

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTSRRTSFRRRPSLP

ccccHHHHHHHcccccccccccEEEccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHcccHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc

ccccHHHHHHEEcccccccccEEEEccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccccHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccc

mskcgyiarlelqpsisnlgydlklenfpggseTFEIILKFCyglpiafnpnniaplrcasefldmseeyedgnliskTEAFLTLVILSSWKETITVLKScknlspwaENLQIVRRCCDSIAWkasrensttedianrqgwwfddvatlGIDHFMRIITTIkvkgtkpeiIGKCIMHYAKKWlpgmdveleglrgygygkhELQFSILNAGKEEVSVGQKEQRTIIENLVNllphqdegvscKFFLQMLKMAMVYNASPALISELEKRVGMMLedanandllipnyknedhaklnspehntmhnIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAevardpnlsiTKFQVLAEslpenartcHDGLYRAIDTylkshpslsehDRRRLCKlmnceklslDACTHaaqndrlplRTVVQVLFSEQVKMRTAmqetepalqcdnseqgdtqpstSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKnsfhskadadetgnrrqtfnstsrrtsfrrrpslp

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWkasrensttedianrqgwwFDDVATLGIDHFMRIITTikvkgtkpeiIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAklnspehntmHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTylkshpslsehdrRRLCKLMNCEKLSLDACTHaaqndrlplRTVVQVLFSEQVKMRTAMQetepalqcdnseqgdtqpstSIEIKNLREELENVKTRMAELQKDYSELQREYEKlsnkhkivsswslgwrkIKNSFhskadadetgnrrqtfnstsrrtsfrrrpslp

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEqqqqqkqqNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGnrrqtfnstsrrtsfrrrPSLP

***CGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY***************MHNIDVVQRIMDYFLM******************KILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSL**HDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQ******************************************************************HKIVSSWSLGWRKIK***********************************

*SKCGYI***************LKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMD********************************KEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY*************NTMHNIDVVQRIMDY********************SKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSL**HDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFS**********************************************************************************************************************

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGK********EQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMH************KTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMR**********************STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSK*****************************

**KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENS******NRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGM********************************QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNED*AKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQ********************SIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN*****S*W*L*****************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTSRRTSFRRRPSLP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		548	2.2.26 [Sep-21-2011]
Q9LFU0		607	Putative BTB/POZ domain-c	yes	no	0.961	0.868	0.607	0.0
Q9FMF5		746	Root phototropism protein	no	no	0.870	0.639	0.409	1e-127
Q5KS50		762	Coleoptile phototropism p	yes	no	0.875	0.629	0.385	1e-124
Q9S9Q9		665	BTB/POZ domain-containing	no	no	0.850	0.700	0.362	8e-92
Q9FNB3		591	Putative BTB/POZ domain-c	no	no	0.861	0.798	0.376	2e-90
Q94A73		668	BTB/POZ domain-containing	no	no	0.770	0.631	0.377	2e-85
Q66GP0		604	BTB/POZ domain-containing	no	no	0.746	0.677	0.379	1e-84
Q9C9Z7		617	BTB/POZ domain-containing	no	no	0.936	0.831	0.328	1e-82
Q9LYW0		592	BTB/POZ domain-containing	no	no	0.874	0.809	0.339	1e-82
Q9SA69		634	BTB/POZ domain-containing	no	no	0.888	0.768	0.346	3e-82

>sp\|Q9LFU0\|DOT3_ARATH Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1	Back alignment and function desciption

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/556 (60%), Positives = 426/556 (76%), Gaps = 29/556 (5%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI+ +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+  NP N+APLRCA
Sbjct: 71  ISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCA 130

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SE+L M+EE+E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWAENLQIVRRCCD 
Sbjct: 131 SEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDL 190

Query: 121 IAWKASRENSTTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
           +AWKA  +N+  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  KP+I GK IM YA
Sbjct: 191 LAWKACNDNNIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYA 250

Query: 180 KKWLPGMDVELEGLRGYGYGKHELQFSILNAGK--EEVSVGQKEQRTIIENLVNLLPHQD 237
             +LP ++ +LEG++GYG GK+ELQFS+ N G+  E  S+G +E +  IE+LV++LP Q 
Sbjct: 251 DNFLPVINDDLEGIKGYGLGKNELQFSV-NRGRMEESNSLGCQEHKETIESLVSVLPPQS 309

Query: 238 EGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSP 297
             VSC F L+MLK ++VY+ASPALIS+LEKRVGM LEDAN  DLLIPN+KNE+  +    
Sbjct: 310 GAVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEEQQER--- 366

Query: 298 EHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQ 357
                       RI ++FLMHEQQQ      +GK ++SK+LDNYLAE+A+DP L ITKFQ
Sbjct: 367 -----------VRIFEFFLMHEQQQV-----LGKPSISKLLDNYLAEIAKDPYLPITKFQ 410

Query: 358 VLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQND 417
           VLAE LPENA  CHDGLYRAID +LK+HPSLS+HDRRRLCK MNCEKLSLDAC HAAQND
Sbjct: 411 VLAEMLPENAWKCHDGLYRAIDMFLKTHPSLSDHDRRRLCKTMNCEKLSLDACLHAAQND 470

Query: 418 RLPLRTVV----QVLFSEQVKMRTAMQETEPALQCDNS-EQGDTQPSTSIE-IKNLREEL 471
           RLPLRT+V    QVLFSEQVKMR  MQ+  P  + +NS  + D + S   E IK L+EEL
Sbjct: 471 RLPLRTIVQINTQVLFSEQVKMRMMMQDKLPEKEEENSGGREDKRMSRDNEIIKTLKEEL 530

Query: 472 ENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQT 531
           ENVK +M+ELQ DY+ELQ+EYE+LS+K K   +W L W+K+K SF +K + +ET  R + 
Sbjct: 531 ENVKKKMSELQSDYNELQQEYERLSSKQKSSHNWGLRWQKVKKSFQTKREDEETRERTRR 590

Query: 532 FNSTSRRTSFRRRPSL 547
            +ST +RTSFRRR S+
Sbjct: 591 RSSTGQRTSFRRRMSM 606

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9FMF5\|RPT3_ARATH Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2	Back alignment and function description

>sp\|Q5KS50\|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1	Back alignment and function description

>sp\|Q9S9Q9\|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2	Back alignment and function description

>sp\|Q9FNB3\|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1	Back alignment and function description

>sp\|Q94A73\|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2	Back alignment and function description

>sp\|Q66GP0\|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2	Back alignment and function description

>sp\|Q9C9Z7\|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2	Back alignment and function description

>sp\|Q9LYW0\|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1	Back alignment and function description

>sp\|Q9SA69\|Y1301_ARATH BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		548
255580882		643	Root phototropism protein, putative [Ric	0.998	0.850	0.716	0.0
429326652		637	transposase [Populus tomentosa]	0.990	0.852	0.711	0.0
224093756		544	predicted protein [Populus trichocarpa]	0.927	0.933	0.733	0.0
224081144		540	predicted protein [Populus trichocarpa]	0.934	0.948	0.729	0.0
356528467		626	PREDICTED: putative BTB/POZ domain-conta	0.965	0.845	0.700	0.0
356511091		629	PREDICTED: putative BTB/POZ domain-conta	0.965	0.841	0.692	0.0
449439029		616	PREDICTED: putative BTB/POZ domain-conta	0.981	0.873	0.634	0.0
449483335		616	PREDICTED: putative BTB/POZ domain-conta	0.981	0.873	0.634	0.0
72384490		630	80A08_21 [Brassica rapa subsp. pekinensi	0.990	0.861	0.614	0.0
359497198		571	PREDICTED: putative BTB/POZ domain-conta	0.775	0.744	0.742	0.0

>gi\|255580882\|ref\|XP_002531260.1\| Root phototropism protein, putative [Ricinus communis] gi\|223529145\|gb\|EEF31124.1\| Root phototropism protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/551 (71%), Positives = 456/551 (82%), Gaps = 4/551 (0%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI RLELQPSISN GY+LKLENFPGGSE FEIILKFCYGLP+  NPNNIA LRCA
Sbjct: 92  VSKCGYIGRLELQPSISNFGYELKLENFPGGSEAFEIILKFCYGLPLDLNPNNIAALRCA 151

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+MSEE EDGNLISKTEAFLT V+LSSWK+TITVLKSC+ LSPWAENLQIVRRCCDS
Sbjct: 152 SEFLEMSEELEDGNLISKTEAFLTFVVLSSWKDTITVLKSCETLSPWAENLQIVRRCCDS 211

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKASR+NST  +I N +GWWFDDVATL  DHFMRI+T ++ KG KPEI GKCIMHYA 
Sbjct: 212 IAWKASRDNSTVHNIINEEGWWFDDVATLRTDHFMRIVTAVRAKGAKPEITGKCIMHYAS 271

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQ-KEQRTIIENLVNLLPHQDEG 239
           +WLPGMDVELEGLRGY YGK+ELQF IL    ++  VG  KEQ+ IIE++V LLP Q E 
Sbjct: 272 RWLPGMDVELEGLRGYRYGKNELQFGILCGRNKDEGVGHSKEQKNIIESIVRLLPPQPEA 331

Query: 240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAK-LNSPE 298
           V CKF L+MLKMA+VY+ASPALISELE RVG+ LE+A+ NDLLIPNYK ED  K +  PE
Sbjct: 332 VPCKFLLKMLKMAIVYSASPALISELEMRVGLTLENASVNDLLIPNYKTEDQVKTMKHPE 391

Query: 299 HNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQV 358
           H  M+NI+VVQRI++YFLMHEQ+QQQ Q   GK+NVSK++DNYLAE+ARDPNLSITKFQV
Sbjct: 392 HCVMYNIEVVQRIVEYFLMHEQEQQQLQPMSGKSNVSKLMDNYLAEIARDPNLSITKFQV 451

Query: 359 LAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDR 418
           LAE LPENARTC DGLYR+IDTYLK+HPSLSEHDR+RLCK+MNCEKLSLDAC HAAQNDR
Sbjct: 452 LAEVLPENARTCDDGLYRSIDTYLKTHPSLSEHDRKRLCKVMNCEKLSLDACMHAAQNDR 511

Query: 419 LPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRM 478
           LP+RTV+QVLFSEQVKMR AM+  EPA   +NSEQ  +Q ST  EI  L+ ELENVK +M
Sbjct: 512 LPMRTVIQVLFSEQVKMREAMRGKEPAASGNNSEQEVSQTSTKAEIMTLKTELENVKAKM 571

Query: 479 AELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNS--FHSKADADETGNRRQTFNSTS 536
           AELQ+DYSELQ EY K+++K + +  WS  W+KI+ S  F  K +A+ET   +Q  N   
Sbjct: 572 AELQRDYSELQHEYVKINSKQRHLPGWSFNWKKIRKSSLFSRKTEAEETSEGQQRSNPLI 631

Query: 537 RRTSFRRRPSL 547
            + +FRRR S+
Sbjct: 632 SKINFRRRQSI 642

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|429326652\|gb\|AFZ78666.1\| transposase [Populus tomentosa]	Back alignment and taxonomy information

>gi\|224093756\|ref\|XP_002309978.1\| predicted protein [Populus trichocarpa] gi\|222852881\|gb\|EEE90428.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224081144\|ref\|XP_002306309.1\| predicted protein [Populus trichocarpa] gi\|222855758\|gb\|EEE93305.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356528467\|ref\|XP_003532824.1\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356511091\|ref\|XP_003524263.1\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449439029\|ref\|XP_004137290.1\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449483335\|ref\|XP_004156559.1\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|72384490\|gb\|AAZ67606.1\| 80A08_21 [Brassica rapa subsp. pekinensis]	Back alignment and taxonomy information

>gi\|359497198\|ref\|XP_002262774.2\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like, partial [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		548
TAIR\|locus:2145387		607	DOT3 "DEFECTIVELY ORGANIZED TR	0.554	0.500	0.593	3.4e-169
TAIR\|locus:2173418		746	NPH3 "NON-PHOTOTROPIC HYPOCOTY	0.346	0.254	0.489	3.5e-118
TAIR\|locus:2028160		665	AT1G30440 [Arabidopsis thalian	0.593	0.488	0.383	7.5e-86
TAIR\|locus:2173204		591	AT5G13600 [Arabidopsis thalian	0.861	0.798	0.382	1.5e-81
TAIR\|locus:2143558		592	AT5G03250 [Arabidopsis thalian	0.635	0.587	0.34	2.5e-79
TAIR\|locus:2082132		651	AT3G44820 [Arabidopsis thalian	0.667	0.562	0.318	1.6e-75
TAIR\|locus:2154920		668	AT5G66560 [Arabidopsis thalian	0.472	0.387	0.409	1.1e-74
TAIR\|locus:2077868		582	AT3G08660 [Arabidopsis thalian	0.516	0.486	0.362	1.2e-73
TAIR\|locus:2158182		579	NPY3 "NAKED PINS IN YUC MUTANT	0.436	0.412	0.384	1.1e-72
TAIR\|locus:2077763		617	AT3G08570 [Arabidopsis thalian	0.888	0.789	0.342	3.2e-72

TAIR\|locus:2145387 DOT3 "DEFECTIVELY ORGANIZED TRIBUTARIES 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 978 (349.3 bits), Expect = 3.4e-169, Sum P(2) = 3.4e-169
 Identities = 191/322 (59%), Positives = 247/322 (76%)

Query:     1 MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
             +SKCGYI+ +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+  NP N+APLRCA
Sbjct:    71 ISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCA 130

Query:    61 SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
             SE+L M+EE+E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWAENLQIVRRCCD 
Sbjct:   131 SEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDL 190

Query:   121 IAWKASRENSTTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
             +AWKA  +N+  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  KP+I GK IM YA
Sbjct:   191 LAWKACNDNNIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYA 250

Query:   180 KKWLPGMDVELEGLRGYGYGKHELQFSILNAGK--EEVSVGQKEQRTIIENLVNLLPHQD 237
               +LP ++ +LEG++GYG GK+ELQFS+ N G+  E  S+G +E +  IE+LV++LP Q 
Sbjct:   251 DNFLPVINDDLEGIKGYGLGKNELQFSV-NRGRMEESNSLGCQEHKETIESLVSVLPPQS 309

Query:   238 EGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSP 297
               VSC F L+MLK ++VY+ASPALIS+LEKRVGM LEDAN  DLLIPN+KNE+  +    
Sbjct:   310 GAVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEEQQER--- 366

Query:   298 EHNTMHNIDVVQRIMDYFLMHE 319
                         RI ++FLMHE
Sbjct:   367 -----------VRIFEFFLMHE 377

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

TAIR\|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077868 AT3G08660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFU0	DOT3_ARATH	No assigned EC number	0.6079	0.9616	0.8682	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VII.1805.1	hypothetical protein (544 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		548
pfam03000		249	pfam03000, NPH3, NPH3 family	1e-113

>gnl\|CDD\|217312 pfam03000, NPH3, NPH3 family	Back alignment and domain information

 Score =  337 bits (866), Expect = e-113
 Identities = 116/279 (41%), Positives = 174/279 (62%), Gaps = 41/279 (14%)

Query: 141 WWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGK 200
           WWF+D++ L ID F R+IT +K +G KPE+IG+ +MHYAKKWLPG               
Sbjct: 3   WWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPG--------------- 47

Query: 201 HELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPA 260
                  L+         ++EQR ++E +V+LLP +   VSC F  ++L+ A++  AS +
Sbjct: 48  -------LSRSGSSEEDSEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASES 100

Query: 261 LISELEKRVGMMLEDANANDLLIPN-YKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHE 319
              ELE+R+G+ L+ A  +DLLIP+ Y  E+          T++++D+VQRI++ FL  +
Sbjct: 101 CREELERRIGLQLDQATLDDLLIPSGYSGEE----------TLYDVDLVQRILEVFLSRD 150

Query: 320 QQQQQK--------QQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCH 371
              Q            +     V+K++D YLAE+A DPNL ++KF  LAE++P++AR  H
Sbjct: 151 AATQSSDDEDSEASPSSSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSH 210

Query: 372 DGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDAC 410
           DGLYRAID YLK+HP+LSE +++RLC+LM+C+KLS +AC
Sbjct: 211 DGLYRAIDIYLKAHPNLSESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		548
PF03000		258	NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr	100.0
PF00651		111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	97.87
smart00225		90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	97.73
PHA03098		534	kelch-like protein; Provisional	97.35
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	96.74
PHA02713		557	hypothetical protein; Provisional	96.56
PHA02790		480	Kelch-like protein; Provisional	95.78
PF11822		317	DUF3342: Domain of unknown function (DUF3342); Int	89.26

>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana	Back alignment and domain information

Probab=100.00  E-value=1.6e-90  Score=695.27  Aligned_cols=248  Identities=47%  Similarity=0.890  Sum_probs=222.8

Q ss_pred             CCceeccccccChhHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcCCCccccccccCCCCCCcchhHhhhccCCcccccc
Q 008937          139 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVG  218 (548)
Q Consensus       139 ~dWW~eDl~~L~~~~f~rvi~am~~~g~~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (548)
                      +|||||||+.|++|+|+|||.+|+++||+|++||++|++||+||||++.+...+....               ....+..
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~---------------~~~~~~~   65 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSS---------------AESSTSS   65 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccccc---------------ccccchh
Confidence            4899999999999999999999999999999999999999999999985431111000               1223446


Q ss_pred             hhhhHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcccccccccccccCCCCccccccCCCC
Q 008937          219 QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPE  298 (548)
Q Consensus       219 ~~~qr~llE~iv~LLP~ek~~vsc~fL~~LLR~A~~l~as~~cr~~LE~RIg~qLdqAtldDLLIPs~~~~~~~~~~~~~  298 (548)
                      ..+||.+||+||+|||.++++|||+|||+|||+|+++++|++||.+||+|||.|||||||||||||+ ++.++       
T Consensus        66 ~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~-------  137 (258)
T PF03000_consen   66 ENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGE-------  137 (258)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcc-------
Confidence            7899999999999999999999999999999999999999999999999999999999999999999 33322       


Q ss_pred             CCcccchhHHHHHHHHHHhhhhhh----------hhhhcchhhHHHHhHHHHHhhHhcCCCCCChhHHHHHHHhcCCccc
Q 008937          299 HNTMHNIDVVQRIMDYFLMHEQQQ----------QQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENAR  368 (548)
Q Consensus       299 ~~tlyDVd~V~Riv~~Fl~~~~~~----------~~~~~~~~~~kVakLvD~YLaEiA~D~nL~~skF~~LAealPd~AR  368 (548)
                       +|+||||+|+|||++||.+++..          ...++..++.+||||||+||+|||+|+||+|+||++|||+||++||
T Consensus       138 -~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR  216 (258)
T PF03000_consen  138 -DTLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSAR  216 (258)
T ss_pred             -cchhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhh
Confidence             19999999999999999984321          1125678999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHhhCCCCCHHHhhhhhcccccCCCCHHHh
Q 008937          369 TCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDAC  410 (548)
Q Consensus       369 ~~~DgLYRAIDiYLKaHp~lse~Er~~lCr~mdcqKLS~EAc  410 (548)
                      ++|||||||||||||+||+||++||++||++|||||||+|||
T Consensus       217 ~~hD~LYrAID~YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  217 PSHDGLYRAIDIYLKAHPGLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             hccchHHHHHHHHHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins	Back alignment and domain information

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac	Back alignment and domain information

>PHA03098 kelch-like protein; Provisional	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>PHA02790 Kelch-like protein; Provisional	Back alignment and domain information

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		548
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 68.7 bits (167), Expect = 3e-12
 Identities = 81/531 (15%), Positives = 163/531 (30%), Gaps = 142/531 (26%)

Query: 35  FEI-ILKFCYG--LPIAFNPNNIAPLRCASEFLDM------SEEYED----GNLISKTEA 81
           FE    ++ Y   L + F    +    C  +  DM       EE +      + +S T  
Sbjct: 9   FETGEHQYQYKDILSV-FEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTL- 65

Query: 82  FLTLVILSSWKETI-----TVLKSCKNLSPW-AENLQIVRRCCDSIAWKASRENSTTEDI 135
            L   +LS  +E +      VL+   N   +    ++  +R              T   I
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLR--INY-KFLMSPIKTEQR---------QPSMMTRMYI 113

Query: 136 ANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWL----PGMDVELE 191
             R   + D+          ++     V  ++ +   K      ++ L    P  +V ++
Sbjct: 114 EQRDRLYNDN----------QVFAKYNV--SRLQPYLK-----LRQALLELRPAKNVLID 156

Query: 192 GLRGYGYGKHELQFSILNAGKEE---------VSVGQ-KEQRTIIENLVNLLPHQDEGVS 241
           G+   G GK  +   +  + K +         +++       T++E L  LL +Q +   
Sbjct: 157 GVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNW 213

Query: 242 CKFFLQMLKMAMVYNASPALISELEKRVGMMLEDAN-ANDLLIPNYKNEDHAKLNSPEHN 300
                    +          I  ++  +  +L+     N LL+                 
Sbjct: 214 TSRSDHSSNI-------KLRIHSIQAELRRLLKSKPYENCLLV----------------- 249

Query: 301 TMHNIDVVQ--RIMDYF------LMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLS 352
               +  VQ  +  + F      L+  + +Q        T     LD++   +  D   S
Sbjct: 250 ----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 353 I-TKF-QVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLC-KLMNCEKLSLDA 409
           +  K+     + LP    T +      I   ++   +  ++ +   C KL    + SL+ 
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 410 CTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQ---CDNSEQGDTQPSTSIEIKN 466
              A         +V    F     +          L     D  +          ++  
Sbjct: 366 LEPAEYRKMFDRLSV----FPPSAHI------PTILLSLIWFDVIKS---------DVMV 406

Query: 467 LREELENVKTRMAELQKD---------YSELQREYEKLSNKHK-IVSSWSL 507
           +  +L   K  + E Q           Y EL+ + E     H+ IV  +++
Sbjct: 407 VVNKL--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		548
3i3n_A		279	Kelch-like protein 11; structural genomics, BTB, K	98.49
3hve_A		256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	98.38
2vkp_A		109	BTB/POZ domain-containing protein 6; protein-bindi	98.24
1buo_A		121	POZ domain, protein (promyelocytic leukemia zinc f	98.21
2if5_A		120	Zinc finger and BTB domain-containing protein 7A;	98.16
3htm_A		172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	98.15
3b84_A		119	Zinc finger and BTB domain-containing protein 48;	98.15
2vpk_A		116	Myoneurin; transcription regulation, transcription	98.09
1r29_A		127	B-cell lymphoma 6 protein; BTB domain, transcripti	98.05
2ppi_A		144	Gigaxonin; BTB domain, protein degradation, struct	98.02
2yy9_A		135	Zinc finger and BTB domain-containing protein 48;	98.01
4eoz_A		145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	98.0
2z8h_A		138	Transcription regulator protein BACH1; BTB, POZ, d	97.98
3ga1_A		129	Nucleus accumbens-associated protein 1; BTB/POZ do	97.97
2q81_A		119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	97.95
3ohu_A		125	Transcription regulator protein BACH2; BTB/POZ dom	97.85
2ihc_A		124	Transcription regulator protein BACH1; BRIC-A-BRAC	97.65
3m5b_A		119	Zinc finger and BTB domain-containing protein 32;	97.6
3hqi_A		312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	97.59
3fkc_A		116	Transcriptional regulator kaiso; zinc finger and B	97.57
4ajy_C		97	Transcription elongation factor B polypeptide 1; E	95.99
2ast_A		159	S-phase kinase-associated protein 1A; SCF-substrat	95.7
1fs1_B		141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	92.19
2p1m_A		160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	91.75
2yy0_A		53	C-MYC-binding protein; conserved hypothetical prot	83.94

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A	Back alignment and structure

Probab=98.49  E-value=1.2e-07  Score=94.17  Aligned_cols=199  Identities=11%  Similarity=0.162  Sum_probs=130.6

Q ss_pred             ccccHHHHHhcCCCCCCCccceEecCC----CCChHHHHHHHhhhcCCccccCCcchhHHhhhhhhhcCcccccCCchHH
Q 008937            2 SKCGYIARLELQPSISNLGYDLKLENF----PGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLIS   77 (548)
Q Consensus         2 SkSg~l~kli~~~~~~~~~~~i~L~df----PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~   77 (548)
                      ++|.||+.++...-.......|.|.++    .-.+++|+.+.+|+|++++++++.||..|..||.+|+|.+      |..
T Consensus        56 a~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~  129 (279)
T 3i3n_A           56 AATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR------LKE  129 (279)
T ss_dssp             HHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH------HHH
T ss_pred             HcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH------HHH
Confidence            478999999875322224458899876    4578999999999999999999999999999999999985      999


Q ss_pred             HHHHHhhhhhcCChHHHHHHHhhcccccchhhhhh---hHHHHHHHHHHHhccCCccccccccCCCceeccccccChhHH
Q 008937           78 KTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHF  154 (548)
Q Consensus        78 ktE~FL~~~vl~sW~dsi~vLksce~llp~aE~l~---iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f  154 (548)
                      .++.||.+.+-.         .+|-.++.+|+..+   +...|.+-|+.....       +     +-.++...|+.+..
T Consensus       130 ~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~-------v-----~~~~~f~~L~~~~l  188 (279)
T 3i3n_A          130 FCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKAADMIRRNFHK-------V-----IQDEEFYTLPFHLI  188 (279)
T ss_dssp             HHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHH-------H-----TTSSGGGGSCHHHH
T ss_pred             HHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-------H-----hcCcChhcCCHHHH
Confidence            999999875432         24545556666655   667787777653321       0     11256668888877


Q ss_pred             HHHHHHHHhcC--CC-chhHHHHHHHHHHhhcCCCccccccccCCCCCCcchhHhhhccCCcccccchhhhHHHHHHHHh
Q 008937          155 MRIITTIKVKG--TK-PEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVN  231 (548)
Q Consensus       155 ~rvi~am~~~g--~~-~~~i~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llE~iv~  231 (548)
                      ..++..   -.  ++ .+.|-.+++.|++.-.                                    ...+..+..+..
T Consensus       189 ~~lL~~---d~L~v~sE~~vf~av~~W~~~~~------------------------------------~~r~~~~~~ll~  229 (279)
T 3i3n_A          189 RDWLSD---LEITVDSEEVLFETVLKWVQRNA------------------------------------EERERYFEELFK  229 (279)
T ss_dssp             HHHHTC---SSCCCSCHHHHHHHHHHHHHTTH------------------------------------HHHTTTHHHHHT
T ss_pred             HHHhcC---cCCCCCCHHHHHHHHHHHHHcCH------------------------------------HHHHHHHHHHHH
Confidence            766543   32  33 3445555554443110                                    011122223333


Q ss_pred             hCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008937          232 LLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKR  268 (548)
Q Consensus       232 LLP~ek~~vsc~fL~~LLR~A~~l~as~~cr~~LE~R  268 (548)
                      .+-  =..+|..+|..+++..-.+..++.|+.-|..-
T Consensus       230 ~VR--f~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea  264 (279)
T 3i3n_A          230 LLR--LSQMKPTYLTRHVKPERLVANNEVCVKLVADA  264 (279)
T ss_dssp             TSC--GGGSCHHHHHHTTTTSHHHHTCHHHHHHHHHH
T ss_pred             hcC--CCCCCHHHHHHHhhccchhcCCHHHHHHHHHH
Confidence            221  13478899999888888888899998876543

PyMOL of 3i3n

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B	Back alignment and structure

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}	Back alignment and structure

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A	Back alignment and structure

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A	Back alignment and structure

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}	Back alignment and structure

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}	Back alignment and structure

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}	Back alignment and structure

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A	Back alignment and structure

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}	Back alignment and structure

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}	Back alignment and structure

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}	Back alignment and structure

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}	Back alignment and structure

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}	Back alignment and structure

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A	Back alignment and structure

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A	Back alignment and structure

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}	Back alignment and structure

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0	Back alignment and structure

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A	Back alignment and structure

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A	Back alignment and structure

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*	Back alignment and structure

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D	Back alignment and structure

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*	Back alignment and structure

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		548
d1r29a_		122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	98.31
d1buoa_		121	Promyelocytic leukaemia zinc finger (PLZF) protein	98.3

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.2e-07  Score=78.85  Aligned_cols=76  Identities=18%  Similarity=0.293  Sum_probs=61.2

Q ss_pred             ccccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHhhhcCCccccCCcchhHHhhhhhhhcCcccccCCchHHHHHH
Q 008937            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (548)
Q Consensus         2 SkSg~l~kli~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE~   81 (548)
                      ++|+||+.++...........+.+.|+  .|++|+.+.+|+|+++++++..||..+.+||+||+|.+      |+..++.
T Consensus        46 ~~S~~F~~~f~~~~~e~~~~~~~~~~v--~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C~~  117 (122)
T d1r29a_          46 ACSGLFYSIFTDQLKRNLSVINLDPEI--NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH------VVDTCRK  117 (122)
T ss_dssp             HHCHHHHHHHTSTTTTTCSEEECCTTS--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred             hCCHHHHHHhccchhhhcceeeeeccc--CHHHHHHHHhhhcCCeecCchhhHHHHHHHHHHHCcHH------HHHHHHH
Confidence            579999999975433212222333444  57999999999999999999999999999999999985      9999999


Q ss_pred             Hhhh
Q 008937           82 FLTL   85 (548)
Q Consensus        82 FL~~   85 (548)
                      ||..
T Consensus       118 ~L~~  121 (122)
T d1r29a_         118 FIKA  121 (122)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9875

PyMOL of d1r29a_

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure