Citrus Sinensis ID: 008950

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
Protein Sequence
MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWKMI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEccccccEEEEEEEEEccccEEEEcccEEEEccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccccEEEEEEccccEEEEEEEEcccccccccccHHHHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEEEEEccccccccccccccccEEEEEccccccccEEEEEccccccEEccEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEcccccccccEEEEEEcccccccccccccEEEEEEEEEEEEEEcccccccccccccccccccccccccccHHHcccccEEEEEEEEccccccccccccEEEEEEccEEEEEEccccccccccccEEEEEccccccccEEEEEEEEcccccccccccEEEEEEEEccccccccEEcEEEEcccccccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEEEEccEEEEEEEEEEEEEEEEcccccccccEEEEEEEEEccccEEEEEEEccccHcccccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccEEEEEEEEEEEccccccccccccEEEEEEEEccccccEEccccccccccEEEEEEEEcccHHHccEEEEEEEEccccccccccEEEEEEHHHccccccccEEEEcccccccccccccccccEEEEEEEEEEcccccccccHcccccccccccccccccccccccccEEEEEEEEHcccccccccccEEEEEEcccEEEEEEEEccccccccEEEEEEEcccccccEEEEEEEEcccccccccccccEEEEEEHHHHHHcccccEEEEcccccccEEEEEEEEEEc
Coil and Loop (DISEMBL)
MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIyskpnddqveeplvtplceldtiplfdllpeiplwvknpdyerVDWLNRFLSDMWPYLDKAICANVrttaqpifdeysgkfkiesiefenltlgtlpptiygirvyetnenqlvmepalrwagnpNIVLVLKLLSFRITVQLVDLqifaapritlkplvptfpcFATMVVSLmerphvdfgikilggdimsipGLYQFIQKCITKYVAGiyiwpqtyeipildassvaikkpvgILHVKVVRASKLlkkdflgtsdpyvklsltgeklpwkkttvkkknlnpewneNFKLVVKEpesqilqlqvfdwdkvgghdrlgmqlvplklltphetKEFTLDLLkhtnisdpkdmkqrGKIVVELTyvpfkedsikfSSVSkkysrkgsgndqssdeealsGAGLLSVLVQGaedvegenhnnpyaiILYKGDKKRTKMIRKTRDPAWNEEFQfmldepplhekiHIEVMSKRTgirfwskeslghveinltdvvhngrinekYHLINSKRGVIHVDIRWKMI
Flexible Loop (DISEMBL)
MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFenltlgtlppTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAapritlkplvpTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVraskllkkdflgtsdpyvklsltgeklpwkkttvkkknlnpewnENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLlkhtnisdpkdmkqrGKIVVELtyvpfkedsikfssvskkysrkgsgndqssdeEALSGAGLLSVLVQGAEdvegenhnnpyaiilykgdkkrTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEkyhlinskrgvihvdirwkmi
Low Complexity Region (SEG)
MGFLSSvlgvlgfgfiglplgllvgfflfIYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEklpwkkttvkkknlnpEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWKMI
Disordered region (IsUnstruct)
**FLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI********RGKIVVELTYVPFKED*******************************LLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWK**
Disordered Region (DISOPRED)
MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKL*******TSDPYVKLSLTGEKLPWK*TTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK*************GKIVVELTYVPFKEDSIKFSSVSKK**R********SDEEALSGAGLLSVLV**************YAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKY*LINSKRGVIHVDIRWKMI
Disordered Region (DISEMBL)
MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKF***********************SGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWKMI
Disordered Region (DISPRO)
MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDP***KQRGKIVVELTYVPFKE****************************SGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWKMI
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWKMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	548	2.2.26 [Sep-21-2011]
Q7XA06	540	Synaptotagmin-3 OS=Arabid	yes	no	0.974	0.988	0.645	0.0
B6ETT4	537	Synaptotagmin-2 OS=Arabid	no	no	0.974	0.994	0.525	1e-172
Q9SKR2	541	Synaptotagmin-1 OS=Arabid	no	no	0.974	0.987	0.521	1e-170
Q8L706	560	Synaptotagmin-5 OS=Arabid	no	no	0.958	0.937	0.310	3e-71
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.963	0.927	0.314	1e-66
Q3TZZ7	845	Extended synaptotagmin-2	yes	no	0.903	0.585	0.254	1e-32
Q7ZWU7	876	Extended synaptotagmin-2-	N/A	no	0.802	0.502	0.243	7e-31
A0FGR8	921	Extended synaptotagmin-2	yes	no	0.804	0.478	0.25	8e-30
Q5M7N9	889	Extended synaptotagmin-3	no	no	0.494	0.304	0.274	3e-29
Q5FWL4	872	Extended synaptotagmin-2-	N/A	no	0.806	0.506	0.238	3e-29

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/548 (64%), Positives = 451/548 (82%), Gaps = 14/548 (2%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MGF +SVLG++GF  IG+P+GL++GFF+ IYS+P+    E P   PL E     L DLLP
Sbjct: 1   MGFFTSVLGIIGF-VIGIPIGLILGFFVLIYSQPSHQ--EYPPARPLVETSISVLLDLLP 57

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           +IPLW+KNPDYERVDW N+F+S MWPYLDKA+C  +R++ QP+F +Y G F IESIEFEN
Sbjct: 58  DIPLWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFEN 117

Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
           L+LGTLPPT++G++ YETNE +L+ EP+++WAGNPNIVLVLK+LS RI VQLVDLQ FA 
Sbjct: 118 LSLGTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAI 177

Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
            R+ LKPL+PTFPCF  +VVSLME+PHVDFG+K+LGGD+MSIPGLY+++Q+ I + V+ +
Sbjct: 178 VRVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSM 237

Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
           Y WPQ  EIPILD+S+ ++KKPVG+LHV ++RA  LLKKD LGTSDPYVKLSLTGEKLP 
Sbjct: 238 YHWPQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPA 297

Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
           KKTT+KK+NLNPEWNE+FKL+VK+P SQ+LQL+VFDWDKVGGHDRLGMQ++PL+ + P E
Sbjct: 298 KKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGE 357

Query: 361 TKEFTLDLLKHTN-ISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQS 419
            KEF LDL+K++N + D  D K+RG++ V+L YVPF+E+SIK         RK S  ++S
Sbjct: 358 RKEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIK--------RRKESREEKS 409

Query: 420 S-DEEALSGAGLLSVLVQGAEDVEG-ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEF 477
           S D++ LS AGLLSV VQ A+DVEG + H+NPYA++L++G+KK+TKM++KTRDP WNEEF
Sbjct: 410 SEDDDFLSQAGLLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKMLKKTRDPRWNEEF 469

Query: 478 QFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRG 537
           QF L+EPP+ E I +EVMSK TG  F SKE LGHV+INL DVV NGRIN+KYHLINS+ G
Sbjct: 470 QFTLEEPPVKESIRVEVMSKGTGFHFRSKEELGHVDINLDDVVDNGRINQKYHLINSRNG 529

Query: 538 VIHVDIRW 545
           +IH++IRW
Sbjct: 530 IIHIEIRW 537

May be involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1

 Score =  604 bits (1558), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 287/546 (52%), Positives = 405/546 (74%), Gaps = 12/546 (2%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MG +S++LGV+GFGF G  +G+++G++LFIY +  D  VE+P + PL ELD+  +  + P
Sbjct: 1   MGIISTILGVIGFGF-GTTIGIVIGYYLFIYFQSTD--VEDPEIKPLVELDSETIATMFP 57

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           EIP+WVKNPD++R+DWLN+ +  MWPY+DKAIC   ++ A+PI  E    +KI+S+EFE 
Sbjct: 58  EIPMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEM 117

Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
           LTLG+LPP+  G++VY T++ +++ME +++WAGNPNI++V K    + TVQ++DLQ++A 
Sbjct: 118 LTLGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYAT 177

Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
           PRITLKPLVP+FPCFA + VSLM++P VDFG+K+LG D+M+IPGLY+F+Q+ I   VA +
Sbjct: 178 PRITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANM 237

Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
           Y+WP+T  + I+D S  A+KKPVG+L VKV++A KL KKD LG SDPYVKL+L+G+K+P 
Sbjct: 238 YLWPKTLNVQIMDPSK-AMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPG 296

Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
           KKT VK  NLNPEWNE F LVVKEPESQ LQL V+DW++VG HD++GM ++ LK LTP E
Sbjct: 297 KKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEE 356

Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
            K  TL+LLK     +P   K RG++VVE+ Y PFK+D I  +        K        
Sbjct: 357 PKLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAP------ 410

Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFM 480
            E   S  GLL V+V  AED+EG+ H NP   +L++G++++TK ++K R+P W+E+FQF 
Sbjct: 411 -EGTPSTGGLLVVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFP 469

Query: 481 LDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIH 540
           LDEPP+++K+H+EV+S  + +    KE+LG+V INL DVV N RIN+KYHLI+SK G I 
Sbjct: 470 LDEPPINDKLHVEVISSSSRL-IHPKETLGYVVINLGDVVSNRRINDKYHLIDSKNGRIQ 528

Query: 541 VDIRWK 546
           ++++W+
Sbjct: 529 IELQWR 534

May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2

 Score =  598 bits (1541), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 287/550 (52%), Positives = 403/550 (73%), Gaps = 16/550 (2%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MGF S++LG  GFG +G+ LGL++G+ LF+Y  PND  V++P +  + + D   +  +LP
Sbjct: 1   MGFFSTILGFCGFG-VGISLGLVIGYVLFVYLLPND--VKDPEIRSIADQDPKAMLRMLP 57

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           EIPLWVKNPD++RVDW+NRFL  MWPYLDKAIC   +  A+PI +E   K+KI+S+EFE 
Sbjct: 58  EIPLWVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFET 117

Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
           LTLG+LPPT  G++VY T+E +L+MEP L+WA NPNI++ +K    + TVQ+VDLQ+FA 
Sbjct: 118 LTLGSLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKAFGLKATVQVVDLQVFAQ 177

Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
           PRITLKPLVP+FPCFA + VSLME+PHVDFG+K+ G D+MSIPGLY+F+Q+ I   VA +
Sbjct: 178 PRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANM 237

Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
           Y+WP+T  +PILD +  A ++PVGI+HVKVVRA  L KKD +G +DP+VK+ L+ +K+P 
Sbjct: 238 YLWPKTLVVPILDPAK-AFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPS 296

Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
           KKTTVK KNLNPEWNE FK  V++P++Q+L+  V+DW++VG  +++GM ++ LK + P E
Sbjct: 297 KKTTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDE 356

Query: 361 TKEFTLDLLKHTNISD---PKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGND 417
            K FTL+L K  +  +   P D K RGK+ VEL Y PF E+ +      K +    +   
Sbjct: 357 HKAFTLELRKTLDGGEDGQPPD-KYRGKLEVELLYKPFTEEEM-----PKGFEETQAV-- 408

Query: 418 QSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEF 477
           Q + E   +  G+L V+V  AEDVEG++H NPY  I +KG++++TK ++K RDP WNEEF
Sbjct: 409 QKAPEGTPAAGGMLVVIVHSAEDVEGKHHTNPYVRIYFKGEERKTKHVKKNRDPRWNEEF 468

Query: 478 QFMLDEPPLHEKIHIEVMSKRTGIRFWS-KESLGHVEINLTDVVHNGRINEKYHLINSKR 536
            FML+EPP+ EK+H+EV+S  + I     KE+LG+V+I + DVV+N R+N+K+HLI+SK 
Sbjct: 469 TFMLEEPPVREKLHVEVLSTSSRIGLLHPKETLGYVDIPVVDVVNNKRMNQKFHLIDSKN 528

Query: 537 GVIHVDIRWK 546
           G I +++ W+
Sbjct: 529 GKIQIELEWR 538

Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score =  270 bits (689), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 174/561 (31%), Positives = 303/561 (54%), Gaps = 36/561 (6%)

Query: 11  LGFGFIGLPLGLLVGFFL---FIYSKPNDDQVEEPLVTPLCELDTIPLFD----LLPEI- 62
           +GF  +G+ +GLLVG  +   F+  + +  ++   L   +     + + D    L PE  
Sbjct: 1   MGF-IVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFY 59

Query: 63  PLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLT 122
           P WV   + +++ WLN  L+ +WPY+D+A    ++ + +P+ ++Y     + S+ F  LT
Sbjct: 60  PSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASLTFSKLT 118

Query: 123 LGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLK-LLSFRITVQLVDLQIFAAP 181
           LGT+ P   G+ V + ++N + +E  ++W GNPNIVL +K L+   + +Q+ ++      
Sbjct: 119 LGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVF 178

Query: 182 RITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIY 241
           R+  +PLV  FPCF  + VSL E+  +DF +K++GGDI +IPGL + I++ I   V    
Sbjct: 179 RLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSI 238

Query: 242 IWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLP 299
            WP    IPI+  D S + +K PVG+L VK+V+A  L  KD +G SDP+ K+ +   +  
Sbjct: 239 TWPVRKVIPIIPGDYSDLELK-PVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREK 297

Query: 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
            K++     +LNP WNE+F+ VV++  +Q L ++++D + V   + +G   + L  L P 
Sbjct: 298 TKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPG 357

Query: 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS---IKFSSVSKKYSRKGSGN 416
           + K+  L L+K   I   +D K RG++ +EL Y+P+   +     F + S     +   N
Sbjct: 358 KVKDVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKN 415

Query: 417 DQSSDEEALSGA-------GLLSVLVQGAEDVEGEN---HNNPYAIILYK--GDKKRTKM 464
           D + +E A S         G+LSV V  AE++  ++     +PY ++  K  G K +T++
Sbjct: 416 DTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRV 475

Query: 465 IRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR 524
           +  + +P WN+ F F++ E  LH+ + +EV    T    + K+ +G   + LT V+    
Sbjct: 476 VNDSLNPVWNQTFDFVV-EDGLHDMLVLEVWDHDT----FGKDYIGRCILTLTRVIMEEE 530

Query: 525 INEKYHLINSKRGVIHVDIRW 545
             + Y L  SK G + + ++W
Sbjct: 531 YKDWYPLDESKTGKLQLHLKW 551

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score =  254 bits (649), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 181/576 (31%), Positives = 291/576 (50%), Gaps = 48/576 (8%)

Query: 1   MGFLSSVLGVLGFG-FIGLPL--GLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFD 57
           MGFL        FG FIG+ +  GL+V F  +   +          +     +       
Sbjct: 1   MGFL--------FGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRK 52

Query: 58  LLPE--IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIES 115
           LLP    P WV     ++++WLN  L  +WPY+++A    ++++ +P+ ++Y+    + S
Sbjct: 53  LLPGDFYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LAS 111

Query: 116 IEFENLTLGTLPPTIYGIRVYETNE--NQLVMEPALRWAGNPNIVLVLK-LLSFRITVQL 172
           ++F   TLGT+ P   G+ + E+    N + ME  ++W GNP IVL +K LL   + +++
Sbjct: 112 LKFSKFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEV 171

Query: 173 VDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKC 232
            ++      R+  KPLV  FPCF  +  SL E+  +DF +K++GG++ SIPG+   I++ 
Sbjct: 172 KNIGFTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEET 231

Query: 233 ITKYVAGIYIWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVK 290
           I   +     WP    IPIL  D S + + KPVG L VKVV+A  L  KD +G SDPY  
Sbjct: 232 IRDAIEDSITWPVRKIIPILPGDYSDLEL-KPVGKLDVKVVQAKDLANKDMIGKSDPYAI 290

Query: 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQL 350
           + +       KKT     +LNP WNE+F+ +V++  +Q L ++VFD + VG    +G   
Sbjct: 291 VFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQ 350

Query: 351 VPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF-KEDSIK-------- 401
           VPL  L P + K+  L L+K   I   +D K RG++ +EL Y P  KE  +K        
Sbjct: 351 VPLNELVPGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYS 408

Query: 402 ---FSSVSKKYSRKGSGNDQ----SSDEEALSGAGLLSVLVQGAED---VEGENHNNPYA 451
                 V K  S      D     +S ++ +   G+LSV V  AED   V+     + + 
Sbjct: 409 LTILEKVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFV 468

Query: 452 IILYKGD--KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESL 509
           +I  K    K +T+++  + +P WN+ F F++ E  LH+ + +EV         + K+ +
Sbjct: 469 VITLKKSETKSKTRVVPDSLNPVWNQTFDFVV-EDALHDLLTLEVWDHDK----FGKDKI 523

Query: 510 GHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRW 545
           G V + LT V+  G   E + L  +K G + V ++W
Sbjct: 524 GRVIMTLTRVMLEGEFQEWFELDGAKSGKLCVHLKW 559

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1

 Score =  141 bits (356), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 140/551 (25%), Positives = 252/551 (45%), Gaps = 56/551 (10%)

Query: 7   VLGVLGFGFIGLPLG-LLVGFFLFIYSKPNDDQVEEPLVTPLCELD----TIPLFDLLPE 61
           +L V   G++GL    +L+   L  + + +       L   L  L+     + L     +
Sbjct: 47  LLPVYALGYLGLSFSWVLLALGLLAWCRRSRGLKASRLCRALALLEDEEQAVRLGVRACD 106

Query: 62  IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENL 121
           +P WV  PD ER +WLN+ +  MWP++ + I    R T +P          + +  F  +
Sbjct: 107 LPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANAHLSTFSFTKV 164

Query: 122 TLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFA 179
            +G  P  + G++VY  N  + Q++++  + + GN  I L +K    R  V+   +QI  
Sbjct: 165 DVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIHG 222

Query: 180 APRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAG 239
             R+ L+PL+   P    + +  + +P ++     L  +++ IPGL       I   ++ 
Sbjct: 223 TMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDIPGLNGLSDTIILDIISN 281

Query: 240 IYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYVK 290
             + P    +P++    +A  +   P G+L +  + A  L  KD        G SDPY  
Sbjct: 282 YLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGI 341

Query: 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQL 350
           + +  +     ++ V K+NL+P+WNE ++ +V E   Q L++++FD D     D LG  +
Sbjct: 342 IRVGNQIF---QSKVIKENLSPKWNEVYEALVYEHPGQELEIELFDEDP-DKDDFLGSLM 397

Query: 351 VPLKLLTPHETKE--FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKK 408
           + L  +      +  FTLD +       PK     GK+ ++L ++    D+   +++ K 
Sbjct: 398 IDLIEVEKERLLDEWFTLDEV-------PK-----GKLHLKLEWLTLMPDA---ANLDKV 442

Query: 409 YSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHN-NPYAII-LYKGDKKRTKMIR 466
            +   +  DQ+SD   LS A L+  L        G+  N NP  ++ +  G K +   IR
Sbjct: 443 LADIRADKDQASD--GLSSALLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESKIR 500

Query: 467 -KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVV--HNG 523
            KT +P W E F F +   P  + + +EV  ++       + SLG + I L+ ++   N 
Sbjct: 501 YKTSEPVWEENFTFFIHN-PRRQDLEVEVKDEQ------HQCSLGSLRIPLSQLLTSDNM 553

Query: 524 RINEKYHLINS 534
            IN+++ L NS
Sbjct: 554 TINQRFQLSNS 564

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|Q7ZWU7|EST2B_XENLA Extended synaptotagmin-2-B OS=Xenopus laevis GN=esyt2-b PE=2 SV=1

 Score =  135 bits (341), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 125/514 (24%), Positives = 229/514 (44%), Gaps = 74/514 (14%)

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           ++P WV  PD ER +WLN+ +  MWPY+ + I    R T +P          + +  F  
Sbjct: 114 DLPAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAV--RGANAHLSTFSFTK 171

Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
           + +G+ P  I G++VY  N  + Q++++  + + G   I L +K    R  V+   +Q+ 
Sbjct: 172 IDMGSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRAGVK--SIQLH 229

Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
              R+ L+PL+   P    + +  + +P ++     L  +++ +PGL       I   ++
Sbjct: 230 GTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGL-TNMLDMPGLNGLSDTIILDIIS 288

Query: 239 GIYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYV 289
              + P    +P++    +A  +   P G+L +  + A  L+ KD        G SDPY 
Sbjct: 289 NYLVLPNRITVPLVSDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYG 348

Query: 290 KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
            + L  +     ++ V K+NLNP+WNE ++ +V E   Q L++++FD D     D LG  
Sbjct: 349 VVRLGNQVF---QSKVIKENLNPKWNEVYEALVHEHPGQELEIELFDED-TDKDDFLGSL 404

Query: 350 LVPLKLLTPHETKE--FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSK 407
           L+ L  +      +  FTL            D    GK+ ++L ++  K  +     V K
Sbjct: 405 LIDLVEVEKERVVDEWFTL------------DEATSGKLHLKLEWLTPKSTTENLDQVLK 452

Query: 408 KYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHN---------------- 447
                 +  DQ++D   LS A LL + +  A  +       NH+                
Sbjct: 453 SIK---ADKDQAND--GLS-AALLILYLDSARSLPNNPLEINHDGMKKAAVEKAKKAGKK 506

Query: 448 -----NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIR 502
                NPY +       + +K+  KT +P W + F F +  P   + + +EV  +     
Sbjct: 507 IGSSPNPYVLFSVGHTVQESKVKYKTAEPVWEQTFTFFVHNPK-RQDLEVEVKDEN---- 561

Query: 503 FWSKESLGHVEINLTDVVHNG--RINEKYHLINS 534
              + S+G+++I L+ ++ +    +N+++HL NS
Sbjct: 562 --HQNSMGNIKIPLSQILASEDLTLNQRFHLNNS 593

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus laevis (taxid: 8355)

>sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1

 Score =  132 bits (332), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 123/492 (25%), Positives = 232/492 (47%), Gaps = 51/492 (10%)

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           ++P WV  PD ER +WLN+ +  MWP++ + I    R T +P          + +  F  
Sbjct: 182 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANTHLSTFSFTK 239

Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
           + +G  P  I G++VY  N  + Q++++  + + GN  I L +K    R  V+   +QI 
Sbjct: 240 VDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIH 297

Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
              R+ L+PL+   P    + +  + +P ++     L  +++ +PGL       I   ++
Sbjct: 298 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDVPGLNGLSDTIILDIIS 356

Query: 239 GIYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYV 289
              + P    +P++    +A  +   P G+L +  + A  L  KD        G SDPY 
Sbjct: 357 NYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 416

Query: 290 KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
            + +  +     ++ V K+NL+P+WNE ++ +V E   Q L++++FD D     D LG  
Sbjct: 417 IIRVGNQIF---QSRVIKENLSPKWNEVYEALVYEHPGQELEIELFDEDP-DKDDFLGSL 472

Query: 350 LVPLKLLTPHETKE--FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSK 407
           ++ L  +      +  FTLD +       PK     GK+ + L ++    ++   S++ K
Sbjct: 473 MIDLIEVEKERLLDEWFTLDEV-------PK-----GKLHLRLEWLTLMPNA---SNLDK 517

Query: 408 KYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGEN-HNNPYAII-LYKGDKKRTKMI 465
             +   +  DQ++D   LS A L+  L        G+   +NP  ++ +  G K +   I
Sbjct: 518 VLTDIKADKDQAND--GLSSALLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESKI 575

Query: 466 R-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVV--HN 522
           R KT +P W E F F +  P   + + +EV  ++       + SLG++++ L+ ++   +
Sbjct: 576 RYKTNEPVWEENFTFFIHNPK-RQDLEVEVRDEQ------HQCSLGNLKVPLSQLLTSED 628

Query: 523 GRINEKYHLINS 534
             +++++ L NS
Sbjct: 629 MTVSQRFQLSNS 640

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

>sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1

 Score =  130 bits (327), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 143/291 (49%), Gaps = 20/291 (6%)

Query: 59  LPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEF 118
           L ++P WV  PD ERV+WLN+ +  MWPY+   +    +   +P+    S   K  +  F
Sbjct: 144 LQQLPAWVNFPDVERVEWLNKVVGQMWPYIGMYVEKMFQDKVEPLVRSSSAHLK--AFTF 201

Query: 119 ENLTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQ 176
             + LG   P I G++ Y  N  + +++++  L + G+  I + +K +       +  +Q
Sbjct: 202 TKVHLGEKFPRINGVKSYTKNVDKREVILDLQLSYNGDVEINVEVKKM---CKAGVKGVQ 258

Query: 177 IFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKY 236
           +    R+ L PL+P  P    + +  ++RPH+D     L  +++ IPG+  F    I   
Sbjct: 259 LHGTLRVILAPLLPDLPFVGAVTMFFIQRPHLDINWTGL-TNVLEIPGVSDFSDSMIVDM 317

Query: 237 VAGIYIWPQTYEIPI---LDASSVAIKKPVGILHVKVVRASKLLKKD------FLGTSDP 287
           +A   + P  + +P+   + A+ +    P G+L + ++ A  L+ KD        G SDP
Sbjct: 318 IASHLVLPNRFTVPLSSQVQAAQLRFPLPHGVLRLHLIEAEDLIPKDNYLKGIIRGKSDP 377

Query: 288 YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338
           Y  L +  +     K+   K+NLNP+W E ++ VV E   Q L++ ++D D
Sbjct: 378 YAVLRIGNQNF---KSRTIKENLNPKWGEMYEFVVHEVPGQDLEVDLYDED 425

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laevis GN=esyt2-a PE=2 SV=1

 Score =  130 bits (327), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 226/512 (44%), Gaps = 70/512 (13%)

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           ++P WV  PD ER +WLN+ +  MWPY+ + I    R T +P          + +  F  
Sbjct: 110 DLPAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAV--RGANAHLSTFNFTK 167

Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
           + +G+ P  I G++VY  N  + Q++++  + + G   I L +K    R  V+   +Q+ 
Sbjct: 168 IDMGSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRAGVK--SIQLH 225

Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
              R+ L+PL+   P    + +  + +P ++     L  +++ +PGL       I   ++
Sbjct: 226 GTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGL-TNMLDMPGLNGLSDTIILDIIS 284

Query: 239 GIYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYV 289
              + P    +P++    +A  +   P G+L +  + A  L+ KD        G SDPY 
Sbjct: 285 NYLVLPNRITVPLVSDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYG 344

Query: 290 KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
            + L  +     ++ V K+NLNP+WNE ++ +V E   Q L++++FD D     D LG  
Sbjct: 345 VVRLGNQVF---QSKVIKENLNPKWNEVYEALVHEHPGQELEIELFDED-TDKDDFLGSL 400

Query: 350 LVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKY 409
           L+ L  +      +    L          D    GK+ ++L ++     +     V K  
Sbjct: 401 LIDLVEVEKERVVDEWFSL----------DEATSGKLHLKLEWLTPNSTTDNLDQVLKSI 450

Query: 410 SRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHN------------------ 447
               +  DQ++D   LS A LL + +  A  +       NH+                  
Sbjct: 451 K---ADKDQAND--GLSSA-LLILYLDSARSLPNNPLEINHDGMKKAAVEKAKKAGKKIG 504

Query: 448 ---NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504
              NPY +       + +K+  KT +P W + F F +  P   + + +EV  +       
Sbjct: 505 SSPNPYVLFSVGHAVQESKVKYKTAEPLWEQTFTFFVHNPK-RQDLEVEVKDEN------ 557

Query: 505 SKESLGHVEINLTDVVHNG--RINEKYHLINS 534
            + S+G+++I L+ ++ +    +N+++HL NS
Sbjct: 558 HQSSMGNLKIPLSQILASEDLTMNQRFHLNNS 589

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	548
224097856	547	predicted protein [Populus trichocarpa]	0.996	0.998	0.757	0.0
255588268	541	calcium lipid binding protein, putative	0.987	1.0	0.742	0.0
224113059	544	predicted protein [Populus trichocarpa]	0.978	0.985	0.742	0.0
225449024	544	PREDICTED: extended synaptotagmin-2 [Vit	0.992	1.0	0.724	0.0
356535625	545	PREDICTED: tricalbin-2-like [Glycine max	0.994	1.0	0.704	0.0
356574609	545	PREDICTED: tricalbin-1-like [Glycine max	0.994	1.0	0.698	0.0
359481536	546	PREDICTED: extended synaptotagmin-2-like	0.992	0.996	0.666	0.0
297741612	547	unnamed protein product [Vitis vinifera]	0.992	0.994	0.661	0.0
449527095	548	PREDICTED: synaptotagmin-3-like [Cucumis	0.989	0.989	0.660	0.0
449464400	548	PREDICTED: synaptotagmin-3-like [Cucumis	0.989	0.989	0.658	0.0

>gi|224097856|ref|XP_002311084.1| predicted protein [Populus trichocarpa] gi|222850904|gb|EEE88451.1| predicted protein [Populus trichocarpa]

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/549 (75%), Positives = 484/549 (88%), Gaps = 3/549 (0%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MGFL++++ +LGFG IGLP GLL+GFFLF+YSKP D  V++P+V PL ELDT  L D+LP
Sbjct: 1   MGFLNTLVELLGFG-IGLPFGLLIGFFLFVYSKPKD-TVKDPVVRPLHELDTGALLDILP 58

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           +IPLWVK PDYERVDWLN+FLSDMWPYLDKA+CA +R T Q +F EY GK+KI++IEFE+
Sbjct: 59  DIPLWVKCPDYERVDWLNKFLSDMWPYLDKAVCAMIRRTTQSMFAEYIGKYKIQAIEFEH 118

Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
           LTLGTLPPTI+G++VYETNE  LVMEPA+RWAGNPNIVLVLKL+S ++TVQLVDLQIFAA
Sbjct: 119 LTLGTLPPTIHGLKVYETNEKDLVMEPAIRWAGNPNIVLVLKLMSLQVTVQLVDLQIFAA 178

Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
           PR+ LKPLVPTFPCFA ++VSLMERPHVDFG+KILGGD+MSIPGLY+F+Q+ I K VA +
Sbjct: 179 PRVALKPLVPTFPCFANILVSLMERPHVDFGLKILGGDVMSIPGLYRFVQEMIKKQVASL 238

Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
           Y+WPQT +IPILD+S+V IKKPVGILHVKVVRA KLLK D LGTSDPYVKL+LTGEKLP 
Sbjct: 239 YLWPQTLDIPILDSSTVIIKKPVGILHVKVVRAKKLLKADLLGTSDPYVKLNLTGEKLPA 298

Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
           KKTT+KKKNLNPEWNENFKLVVK+PESQ LQLQVFDWDKVGGHDRLGMQLVPLK+LTP E
Sbjct: 299 KKTTIKKKNLNPEWNENFKLVVKDPESQALQLQVFDWDKVGGHDRLGMQLVPLKVLTPRE 358

Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
           TK+FTLDLLKHTNISD +D KQRG+IVVELTYVPF+EDSIKFS         GS + +S+
Sbjct: 359 TKDFTLDLLKHTNISDSRDKKQRGQIVVELTYVPFREDSIKFSGPLDGNGEMGSVSGRST 418

Query: 421 DEEA-LSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQF 479
            EEA LSGAGLLSV+VQGAEDVEG+ H+NPYA++L++G++KRTK I+KTRDP WNEEFQF
Sbjct: 419 PEEAPLSGAGLLSVMVQGAEDVEGKRHHNPYALVLFRGERKRTKTIKKTRDPRWNEEFQF 478

Query: 480 MLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVI 539
            LD+PPLHE I IEVMSKR    F SKESLGHVEINL DVV+NGRIN+KYHLI+S+ GVI
Sbjct: 479 TLDQPPLHELIRIEVMSKRKSFSFRSKESLGHVEINLDDVVYNGRINQKYHLIDSRNGVI 538

Query: 540 HVDIRWKMI 548
           HV+IRW  +
Sbjct: 539 HVEIRWSTV 547

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588268|ref|XP_002534553.1| calcium lipid binding protein, putative [Ricinus communis] gi|223525050|gb|EEF27829.1| calcium lipid binding protein, putative [Ricinus communis]

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/548 (74%), Positives = 482/548 (87%), Gaps = 7/548 (1%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MGFLS+VLG LGFGF  LP+GLL+GFFLF+YS+P    V++P+V PL ELD+  L D+LP
Sbjct: 1   MGFLSTVLGFLGFGFG-LPIGLLLGFFLFVYSQPEHHDVKDPVVRPLHELDSSTLEDILP 59

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           EIPLWVK PDYERVDWLN+ L DMWPYLDKAIC+ +R+TA+PIF EY G++ IE+IEFE+
Sbjct: 60  EIPLWVKCPDYERVDWLNKLLLDMWPYLDKAICSTIRSTAEPIFAEYIGQYMIEAIEFEH 119

Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
           LTLGTLPP I+G++VYETNE  LVMEPA++WAGNPNI+L++KL+S  + VQL+DLQIFAA
Sbjct: 120 LTLGTLPPVIHGLKVYETNEKDLVMEPAIKWAGNPNIILMIKLMSLPVRVQLIDLQIFAA 179

Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
           PRI LKPLVP+FPCFA +VVSLMERPHVDFG+K+LGGD+MSIPGLY+ +Q+ I K VA +
Sbjct: 180 PRIALKPLVPSFPCFANIVVSLMERPHVDFGLKVLGGDLMSIPGLYRLVQETIKKQVARL 239

Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
           Y+WPQ  +IP+LD+S+VAIKKPVGILHVKVVRA KLLK D LGTSDPYVKLSLTGEKLP 
Sbjct: 240 YLWPQFLDIPVLDSSTVAIKKPVGILHVKVVRAMKLLKADLLGTSDPYVKLSLTGEKLPA 299

Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
           KKTTVKKKNLNPEWNENFKL+VK+P+SQ+LQLQVFDWDKVGGHDRLGMQ+VPLK+LTP E
Sbjct: 300 KKTTVKKKNLNPEWNENFKLIVKDPQSQVLQLQVFDWDKVGGHDRLGMQVVPLKVLTPGE 359

Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
            KEF LDLLKHTNISDP+D K+RG+IVVELT+VPFK+DS KF+           G+++SS
Sbjct: 360 AKEFILDLLKHTNISDPQDKKRRGQIVVELTFVPFKQDSAKFTEPV------DGGSEKSS 413

Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFM 480
           DEE LSGAGLLSV+VQGAEDVEGE+H+NPYA++L++G+KK+TKMIRKTRDP WNEEFQF 
Sbjct: 414 DEEKLSGAGLLSVIVQGAEDVEGEHHSNPYALVLFRGEKKKTKMIRKTRDPHWNEEFQFT 473

Query: 481 LDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIH 540
           LD+PPL EK+HI+VMSKRT   F SKESLGHVEINL DVVHNGRINEKYHLINSK G+IH
Sbjct: 474 LDQPPLREKMHIDVMSKRTRFSFLSKESLGHVEINLDDVVHNGRINEKYHLINSKHGLIH 533

Query: 541 VDIRWKMI 548
           ++IRW  +
Sbjct: 534 LEIRWDTV 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113059|ref|XP_002316376.1| predicted protein [Populus trichocarpa] gi|222865416|gb|EEF02547.1| predicted protein [Populus trichocarpa]

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/556 (74%), Positives = 472/556 (84%), Gaps = 20/556 (3%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MGFL++ L  LGFG IGLP GLL+GFFLF+YSKP D  V++P+V PL ELDT  L D+LP
Sbjct: 1   MGFLNAFLEFLGFG-IGLPFGLLIGFFLFVYSKPKD--VKDPVVRPLHELDTDALLDILP 57

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           +IPLWVK PDYERVDWLN+FL DMWPYLDKAICA +R+T +P+F EY GK+KIE+IEFE+
Sbjct: 58  DIPLWVKCPDYERVDWLNKFLLDMWPYLDKAICAMIRSTTKPMFAEYIGKYKIEAIEFEH 117

Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
           LTLGTLPP I G++VYET E  LVMEPA+RWAGNPNIVLVL+LLS R+  QLVDLQIFAA
Sbjct: 118 LTLGTLPPIIQGLKVYETMEKDLVMEPAIRWAGNPNIVLVLQLLSVRLRFQLVDLQIFAA 177

Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
           PR+ LKPLVPTFPCFA +VVSLMERPHVDFG+KILGGD+MSIPGLY+     I K VA +
Sbjct: 178 PRVALKPLVPTFPCFANIVVSLMERPHVDFGLKILGGDVMSIPGLYRL--DMIKKQVASL 235

Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
           Y+WPQT +IP++DAS++ IKKPVGILHVKVVRA KLLK D LGTSDPYVKL LTGEKLP 
Sbjct: 236 YLWPQTLDIPVIDASTMVIKKPVGILHVKVVRAKKLLKADILGTSDPYVKLCLTGEKLPA 295

Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
           KKTT+KKKNLNPEWNENFKLVVK+PESQ LQLQVFDWDKVGGHDRLGMQ VPLK+LTP E
Sbjct: 296 KKTTIKKKNLNPEWNENFKLVVKDPESQALQLQVFDWDKVGGHDRLGMQFVPLKVLTPRE 355

Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGND--- 417
           TKEFTLDLLKHTNISD +D KQRG+IV+ELTYVPF+EDSI+FS           GND   
Sbjct: 356 TKEFTLDLLKHTNISDSQDKKQRGQIVLELTYVPFREDSIEFSG-------PLDGNDRRG 408

Query: 418 -----QSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPA 472
                 SS +E+LSGAGLLSV+VQGAEDVEG++H NPYA++ ++G++KRTKMI+KTRDP 
Sbjct: 409 SASGRSSSGDESLSGAGLLSVIVQGAEDVEGKHHINPYALVHFRGERKRTKMIKKTRDPR 468

Query: 473 WNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532
           WNEEFQF LD+PPLHE I IEVMSKRT   F SKESLGHVEINL DVVHNGRIN+KYHLI
Sbjct: 469 WNEEFQFTLDQPPLHELIRIEVMSKRTSFSFRSKESLGHVEINLDDVVHNGRINQKYHLI 528

Query: 533 NSKRGVIHVDIRWKMI 548
           +SK GVIHV+IRW  +
Sbjct: 529 DSKNGVIHVEIRWSTV 544

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449024|ref|XP_002272997.1| PREDICTED: extended synaptotagmin-2 [Vitis vinifera] gi|296086005|emb|CBI31446.3| unnamed protein product [Vitis vinifera]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/548 (72%), Positives = 480/548 (87%), Gaps = 4/548 (0%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MGFLSS+L ++GFG IG+P GLLVGFFLF+YS+P D  V++P V PL ELD+  L DLLP
Sbjct: 1   MGFLSSLLDIVGFG-IGIPFGLLVGFFLFVYSQPKD--VQDPDVRPLSELDSSTLMDLLP 57

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           E+P WVKNP+Y+RVDWLN+F+ +MWPYLDKAIC  +R+ AQPIF EY G ++IE+IEFE 
Sbjct: 58  ELPFWVKNPNYDRVDWLNKFILNMWPYLDKAICDTIRSMAQPIFAEYIGMYQIEAIEFEK 117

Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
           L+LGTLPP ++GI+VYETNE +L MEPA++WAGNPNI+LVLK L FRIT+QLVDLQIFAA
Sbjct: 118 LSLGTLPPILHGIKVYETNEKELAMEPAIKWAGNPNIILVLKWLPFRITIQLVDLQIFAA 177

Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
           PRITLKPLVPTFPCFA++V+SLME+PHVDFG+KILGGDIMSIPGLY+F+Q+ I + VA +
Sbjct: 178 PRITLKPLVPTFPCFASLVLSLMEKPHVDFGLKILGGDIMSIPGLYRFVQETIKREVAKL 237

Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
           Y+WPQT EIPILDA++ AIKKPVGILHVKVVRA KLLK DFLG SDPYVKLSL+GE+LP 
Sbjct: 238 YLWPQTLEIPILDAATGAIKKPVGILHVKVVRALKLLKMDFLGASDPYVKLSLSGERLPA 297

Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
           KKTTVK+KNLNPEWNE FKL+V++P++Q+LQL V+DWDKVG HD+LGMQLVPLKLLTPHE
Sbjct: 298 KKTTVKRKNLNPEWNEKFKLIVRDPQAQVLQLYVYDWDKVGAHDKLGMQLVPLKLLTPHE 357

Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
           T+EFTLDL K+TN+SDP+  KQRGKIVVELT+ PFKED   +S     Y RK S   ++S
Sbjct: 358 TQEFTLDLFKNTNLSDPQQ-KQRGKIVVELTFDPFKEDHECYSGPLDGYGRKESRISRAS 416

Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFM 480
           D++  SGAGLL V +QGAEDVEG+ HNNPYA+IL++G+KK+TKM++KTRDP WNEEFQFM
Sbjct: 417 DDDTPSGAGLLLVTIQGAEDVEGQRHNNPYAVILFRGEKKKTKMMKKTRDPQWNEEFQFM 476

Query: 481 LDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIH 540
           L+EPPL EKIHI+V+S+R+GI F SKES+GHV+I+LTDVVHNGRIN KYHLINSK G IH
Sbjct: 477 LEEPPLSEKIHIQVISQRSGIGFRSKESMGHVDIDLTDVVHNGRINHKYHLINSKNGQIH 536

Query: 541 VDIRWKMI 548
           ++I+WKMI
Sbjct: 537 LEIKWKMI 544

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535625|ref|XP_003536345.1| PREDICTED: tricalbin-2-like [Glycine max]

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/548 (70%), Positives = 466/548 (85%), Gaps = 3/548 (0%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MGFLSS LGV GF  +G+PLGLLVGFFLF+YS+    +V++P+V P+ EL    L +LLP
Sbjct: 1   MGFLSSFLGVFGFA-VGIPLGLLVGFFLFVYSE--TKRVKDPVVRPISELGPNSLQELLP 57

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           EIPLWVK PDYERVDWLN+FL DMWP+LD AIC  +R+T QPIF EY GK++I++I+F+ 
Sbjct: 58  EIPLWVKTPDYERVDWLNKFLLDMWPFLDTAICKIIRSTTQPIFAEYIGKYQIKAIDFDE 117

Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
           L+LGTLPPT+ G++V ETNE +LVME  ++WAGNPNIV+ L + S +IT+QLVDLQIFAA
Sbjct: 118 LSLGTLPPTVCGMKVLETNEKELVMEQVIKWAGNPNIVVSLYVSSLKITIQLVDLQIFAA 177

Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
           PRITL+PLVPTFPCFA +VVSLME+PHVDFG+ + GGDIMSIPGLY+F+Q+ I K VA +
Sbjct: 178 PRITLRPLVPTFPCFANIVVSLMEKPHVDFGMNVSGGDIMSIPGLYRFVQETIKKQVANL 237

Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
           Y+WPQT EIPILD S+VAIKKPVGILHV VVRA KLLK D LGTSDPYVKLSLTG+KLP 
Sbjct: 238 YLWPQTLEIPILDESTVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPA 297

Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
           KKTTVK+KNLNPEWNE FK+VVK+P+SQ+LQLQV+DWDKVGGHD+LGMQLVPLK+L P+E
Sbjct: 298 KKTTVKRKNLNPEWNEKFKIVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLNPYE 357

Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
            KEF LDLLK TN+++    K RGKIVV+LT+VPFKEDS KF   S+ YSRK SG D  S
Sbjct: 358 NKEFILDLLKDTNLNETPHKKPRGKIVVDLTFVPFKEDSNKFGGPSEGYSRKESGIDIVS 417

Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFM 480
           D+E   GAGLLS+++Q AE+VEG++HNNP+A++ ++G+KKRTK ++KTR P WNEEFQFM
Sbjct: 418 DDEVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGEKKRTKTMKKTRHPRWNEEFQFM 477

Query: 481 LDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIH 540
           L+EPPLHEKIHIEVMSKR    F  KESLGHVEINL DVVHNGRIN+KYHLINS+ GV+H
Sbjct: 478 LEEPPLHEKIHIEVMSKRKNFSFLPKESLGHVEINLRDVVHNGRINDKYHLINSRNGVMH 537

Query: 541 VDIRWKMI 548
           V+IRWK++
Sbjct: 538 VEIRWKVV 545

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574609|ref|XP_003555438.1| PREDICTED: tricalbin-1-like [Glycine max]

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/548 (69%), Positives = 461/548 (84%), Gaps = 3/548 (0%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MG +SS LG+LGF  +G+PLGL VGFFLF+YS+     V++P+V P+ EL    L +LLP
Sbjct: 1   MGLVSSFLGILGFA-VGIPLGLFVGFFLFVYSE--TKHVKDPVVRPISELGPNALQELLP 57

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           EIPLWVK PDYERVDWLN+FL D WP+LD AIC  +R+ AQPIF EY GK++I++IEF+ 
Sbjct: 58  EIPLWVKTPDYERVDWLNKFLLDTWPFLDTAICKIIRSRAQPIFFEYIGKYQIKAIEFDK 117

Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
           L+LGTLPPT+ GI+V ETN  +LVME  ++WAGNP IVL + + S +ITVQLVDLQIFAA
Sbjct: 118 LSLGTLPPTVCGIKVLETNGKELVMEQVIKWAGNPEIVLSVYVASLKITVQLVDLQIFAA 177

Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
           PR+TL+PLVPTFPCFA +VVSLME+PHVDFG+ +LGGDIMSIPGLY+F+Q+ I K VA +
Sbjct: 178 PRVTLRPLVPTFPCFANIVVSLMEKPHVDFGMNVLGGDIMSIPGLYRFVQETIKKQVANL 237

Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
           Y+WPQT EIPILD SSVAIKKPVGILHV VVRA KLLK D LGTSDPYVKLSLTG+KLP 
Sbjct: 238 YLWPQTLEIPILDESSVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPA 297

Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
           KKTTVK+KNLNPEWNE FKLVVK+P+SQ+LQLQV+DWDKVGGHD+LGMQLVPLK+L  +E
Sbjct: 298 KKTTVKRKNLNPEWNEKFKLVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLKAYE 357

Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
            KEFTLDLLK TN+++    K RGKIVV+LT+VPFKEDS KF   S+ YSRK SG D  S
Sbjct: 358 NKEFTLDLLKDTNLNETPRKKPRGKIVVDLTFVPFKEDSSKFGGPSEGYSRKESGIDIVS 417

Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFM 480
           D+E   GAGLLS+++Q AE+VEG++HNNP+A++ ++G+KKRTKM++KTR P WNEEFQFM
Sbjct: 418 DDEVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGEKKRTKMMKKTRHPRWNEEFQFM 477

Query: 481 LDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIH 540
           L+EPP HEKIHIEVMSKR    F  K+SLGHVEINL DVVHNG IN+KYHLINS+ GV+H
Sbjct: 478 LEEPPQHEKIHIEVMSKRKNFSFLPKKSLGHVEINLRDVVHNGHINDKYHLINSRNGVMH 537

Query: 541 VDIRWKMI 548
           V+IRWK++
Sbjct: 538 VEIRWKVV 545

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481536|ref|XP_002276374.2| PREDICTED: extended synaptotagmin-2-like [Vitis vinifera]

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/548 (66%), Positives = 465/548 (84%), Gaps = 4/548 (0%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MGF+S++LG++GFG +G+P GL++G+F+FI+++P D +V  P++ PL +LD+  L DLL 
Sbjct: 1   MGFVSALLGIIGFG-VGIPFGLVLGYFIFIHNEPQDVKV--PIIRPLHDLDSDSLLDLLD 57

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           E+PLWVK PDY+R DWLN+F+ DMWPYLDKAIC  +R+T +PIF EY GKF+I+SI+FE 
Sbjct: 58  EMPLWVKTPDYDRADWLNKFIFDMWPYLDKAICGIIRSTTEPIFAEYIGKFQIKSIDFET 117

Query: 121 LTLGTLPPTIYGIRVYETNE-NQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFA 179
           L+LGTL P ++GI+  ETNE N+L++EPA+RWAGNPNI+LVLKLLS RIT+QL DLQI  
Sbjct: 118 LSLGTLSPIVHGIKAQETNEVNELILEPAIRWAGNPNIILVLKLLSLRITLQLTDLQISM 177

Query: 180 APRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAG 239
            PRI LKPLVPTFPCFA++VVSLME+PHVDFG+K+LGGDIM+IPGLYQFIQK I + VA 
Sbjct: 178 VPRIVLKPLVPTFPCFASVVVSLMEKPHVDFGLKLLGGDIMAIPGLYQFIQKTIRRQVAS 237

Query: 240 IYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLP 299
           +Y+WPQT E+PILDA    IKKPVG+LHVKVVRA KLLK D LG SDPYVKLSL+GE+LP
Sbjct: 238 LYLWPQTLEMPILDALVAPIKKPVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERLP 297

Query: 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
            KKT++K K L+PEWNE+FKL+VK+P+SQ+LQL V+DW+KVG HD+LGMQ+VPL+LLTP+
Sbjct: 298 AKKTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKVGMHDKLGMQVVPLRLLTPN 357

Query: 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQS 419
            TK+FTLDLLK+TN +DP + K RGKIVVE+T+ PFKEDS +FS +  ++ R  SG +++
Sbjct: 358 MTKQFTLDLLKNTNPNDPHNKKYRGKIVVEMTFNPFKEDSERFSGLLNEHMRNDSGGERA 417

Query: 420 SDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQF 479
           +++   SGAGLL V++QGAE VEG++HNNPYAIIL+KG++K TK+I+KTRDP WNEEF+F
Sbjct: 418 TEDVPSSGAGLLLVVIQGAEHVEGKHHNNPYAIILFKGERKNTKLIKKTRDPCWNEEFEF 477

Query: 480 MLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVI 539
           ML+E P+ EKIHIEVMSKR G  F  KESLGHV+I+L DVVHNG IN+KY+LI SK GVI
Sbjct: 478 MLEEAPVKEKIHIEVMSKRKGFGFSFKESLGHVDIDLIDVVHNGHINKKYNLIRSKHGVI 537

Query: 540 HVDIRWKM 547
           HV +RWK+
Sbjct: 538 HVGLRWKV 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741612|emb|CBI32744.3| unnamed protein product [Vitis vinifera]

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/549 (66%), Positives = 463/549 (84%), Gaps = 5/549 (0%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MGF+S++LG++GFG +G+P GL++G+F+FI+++P D +V  P++ PL +LD+  L DLL 
Sbjct: 1   MGFVSALLGIIGFG-VGIPFGLVLGYFIFIHNEPQDVKV--PIIRPLHDLDSDSLLDLLD 57

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           E+PLWVK PDY+R DWLN+F+ DMWPYLDKAIC  +R+T +PIF EY GKF+I+SI+FE 
Sbjct: 58  EMPLWVKTPDYDRADWLNKFIFDMWPYLDKAICGIIRSTTEPIFAEYIGKFQIKSIDFET 117

Query: 121 LTLGTLPPTIYG-IRVYETNE-NQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
           L+LGTL P ++G     +TNE N+L++EPA+RWAGNPNI+LVLKLLS RIT+QL DLQI 
Sbjct: 118 LSLGTLSPIVHGKYSSIKTNEVNELILEPAIRWAGNPNIILVLKLLSLRITLQLTDLQIS 177

Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
             PRI LKPLVPTFPCFA++VVSLME+PHVDFG+K+LGGDIM+IPGLYQFIQK I + VA
Sbjct: 178 MVPRIVLKPLVPTFPCFASVVVSLMEKPHVDFGLKLLGGDIMAIPGLYQFIQKTIRRQVA 237

Query: 239 GIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL 298
            +Y+WPQT E+PILDA    IKKPVG+LHVKVVRA KLLK D LG SDPYVKLSL+GE+L
Sbjct: 238 SLYLWPQTLEMPILDALVAPIKKPVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERL 297

Query: 299 PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
           P KKT++K K L+PEWNE+FKL+VK+P+SQ+LQL V+DW+KVG HD+LGMQ+VPL+LLTP
Sbjct: 298 PAKKTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKVGMHDKLGMQVVPLRLLTP 357

Query: 359 HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
           + TK+FTLDLLK+TN +DP + K RGKIVVE+T+ PFKEDS +FS +  ++ R  SG ++
Sbjct: 358 NMTKQFTLDLLKNTNPNDPHNKKYRGKIVVEMTFNPFKEDSERFSGLLNEHMRNDSGGER 417

Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQ 478
           ++++   SGAGLL V++QGAE VEG++HNNPYAIIL+KG++K TK+I+KTRDP WNEEF+
Sbjct: 418 ATEDVPSSGAGLLLVVIQGAEHVEGKHHNNPYAIILFKGERKNTKLIKKTRDPCWNEEFE 477

Query: 479 FMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGV 538
           FML+E P+ EKIHIEVMSKR G  F  KESLGHV+I+L DVVHNG IN+KY+LI SK GV
Sbjct: 478 FMLEEAPVKEKIHIEVMSKRKGFGFSFKESLGHVDIDLIDVVHNGHINKKYNLIRSKHGV 537

Query: 539 IHVDIRWKM 547
           IHV +RWK+
Sbjct: 538 IHVGLRWKV 546

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527095|ref|XP_004170548.1| PREDICTED: synaptotagmin-3-like [Cucumis sativus]

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/548 (66%), Positives = 455/548 (83%), Gaps = 6/548 (1%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MGF S ++G++GFG IG+PLGL+VGFF FIYSKP  D+V++P++ P+ ELD+  L +++P
Sbjct: 1   MGFFSILMGIVGFG-IGIPLGLVVGFFFFIYSKP--DEVKDPMIRPIYELDSDSLEEVIP 57

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           EIPLWVK+PD++RVDWLN+FL  MWP LDKAIC+++R  A+P+F EY GKF+I+SIEFE 
Sbjct: 58  EIPLWVKHPDFDRVDWLNKFLEGMWPCLDKAICSSIRGMAEPMFAEYIGKFQIQSIEFET 117

Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
           L LGTL P +YGI+V+ETNEN++VME A++WAGNPNIVL+L+L S RI +QLVDLQIFAA
Sbjct: 118 LLLGTLSPKLYGIKVHETNENEIVMETAIKWAGNPNIVLILRLFSLRIRIQLVDLQIFAA 177

Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
           PR+ LKPLVP FPCF  +VVSL+E+PHVDFG+KILGGDIMSIPGLYQF+Q+ I K V+ +
Sbjct: 178 PRVALKPLVPAFPCFTNIVVSLLEKPHVDFGMKILGGDIMSIPGLYQFVQETIRKQVSNL 237

Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
           Y+WP   EIPILDAS  A K+PVGILHV VV+A KL K D LGTSDPYVKLSL+GE+LP 
Sbjct: 238 YLWPHVLEIPILDASVAATKRPVGILHVNVVKALKLSKMDLLGTSDPYVKLSLSGERLPS 297

Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
           KKTTVK  NLNP WNE FKL+VK+PESQ+LQLQV+DWDKVGGHDRLGMQLVPLK+LTP+E
Sbjct: 298 KKTTVKMNNLNPIWNEKFKLIVKDPESQVLQLQVYDWDKVGGHDRLGMQLVPLKVLTPYE 357

Query: 361 TKEFTLDLLK--HTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
           TKE TLDLLK  +TNI++ ++ K RG++VVEL + PF+E+S KFSS         S +++
Sbjct: 358 TKELTLDLLKNTNTNINEYQNKKPRGQLVVELKFTPFREESSKFSSQLDGCGSMVSRDER 417

Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQ 478
              ++ + GAGLLSV +QGA  VEG+ H+NPYA++ ++G+KK+TKM++K RDP WNE+F+
Sbjct: 418 DLQDDFVGGAGLLSVKIQGATSVEGKRHSNPYAVMHFRGEKKKTKMVKKCRDPVWNEDFE 477

Query: 479 FMLDEPPLHEKIHIEV-MSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRG 537
           FML+EPPL EKIHIEV   + +   F+SKESLGHVEINL DVVHNGRIN KYHLINS+ G
Sbjct: 478 FMLEEPPLGEKIHIEVRSRRSSRFSFFSKESLGHVEINLGDVVHNGRINTKYHLINSRHG 537

Query: 538 VIHVDIRW 545
           +IHV I+W
Sbjct: 538 MIHVQIKW 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464400|ref|XP_004149917.1| PREDICTED: synaptotagmin-3-like [Cucumis sativus]

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/548 (65%), Positives = 455/548 (83%), Gaps = 6/548 (1%)

Query: 1   MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
           MGF S ++G++GFG IG+PLGL+VGFF FIYSKP  D+V++P++ P+ ELD+  L +++P
Sbjct: 1   MGFFSILMGIVGFG-IGIPLGLVVGFFFFIYSKP--DEVKDPMIRPIYELDSDSLEEVIP 57

Query: 61  EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
           EIPLWVK+PD++RVDWLN+FL  MWP LDKAIC+++R  A+P+F EY GKF+I+SIEFE 
Sbjct: 58  EIPLWVKHPDFDRVDWLNKFLEGMWPCLDKAICSSIRGMAEPMFAEYIGKFQIQSIEFET 117

Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
           L LGTL P +YGI+V+ETNEN++VME A++WAGNPNIVL+L+L S +I +QLVDLQIFAA
Sbjct: 118 LLLGTLSPKLYGIKVHETNENEIVMETAIKWAGNPNIVLILRLFSLQIRIQLVDLQIFAA 177

Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
           PR+ LKPLVP FPCF  +VVSL+E+PHVDFG+KILGGDIMSIPGLYQF+Q+ I K V+ +
Sbjct: 178 PRVALKPLVPAFPCFTNIVVSLLEKPHVDFGMKILGGDIMSIPGLYQFVQETIRKQVSNL 237

Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
           Y+WP   EIPILDAS  A K+PVGILHV VV+A KL K D LGTSDPYVKLSL+GE+LP 
Sbjct: 238 YLWPHVLEIPILDASVAATKRPVGILHVNVVKALKLSKMDLLGTSDPYVKLSLSGERLPS 297

Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
           KKTTVK  NLNP WNE FKL+VK+PESQ+LQLQV+DWDKVGGHDRLGMQLVPLK+LTP+E
Sbjct: 298 KKTTVKMNNLNPIWNEKFKLIVKDPESQVLQLQVYDWDKVGGHDRLGMQLVPLKVLTPYE 357

Query: 361 TKEFTLDLLK--HTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
           TKE TLDLLK  +TNI++ ++ K RG++VVEL + PF+E+S KFSS         S +++
Sbjct: 358 TKELTLDLLKNTNTNINEYQNKKPRGQLVVELKFTPFREESSKFSSQLDGCGSMVSRDER 417

Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQ 478
              ++ + GAGLLSV +QGA  VEG+ H+NPYA++ ++G+KK+TKM++K RDP WNE+F+
Sbjct: 418 DLQDDCVGGAGLLSVKIQGATSVEGKRHSNPYAVMHFRGEKKKTKMVKKCRDPVWNEDFE 477

Query: 479 FMLDEPPLHEKIHIEV-MSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRG 537
           FML+EPPL EKIHIEV   + +   F+SKESLGHVEINL DVVHNGRIN KYHLINS+ G
Sbjct: 478 FMLEEPPLGEKIHIEVRSRRSSRFSFFSKESLGHVEINLGDVVHNGRINTKYHLINSRHG 537

Query: 538 VIHVDIRW 545
           +IHV I+W
Sbjct: 538 MIHVQIKW 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	548
TAIR|locus:2146688	540	SYTC "AT5G04220" [Arabidopsis	0.925	0.938	0.623	3e-181
TAIR|locus:2198581	537	SYTB "AT1G20080" [Arabidopsis	0.923	0.942	0.504	3.6e-144
TAIR|locus:2201036	560	NTMC2T2.1 "AT1G05500" [Arabido	0.874	0.855	0.313	2.2e-66
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.881	0.848	0.300	5.9e-57
TAIR|locus:2047027	256	AT2G21010 "AT2G21010" [Arabido	0.456	0.976	0.417	1.3e-54
TAIR|locus:2100992	510	NTMC2T4 [Arabidopsis thaliana	0.620	0.666	0.356	8.9e-54
FB|FBgn0039208	849	Esyt2 [Drosophila melanogaster	0.759	0.489	0.243	1.9e-33
WB|WBGene00020443	713	esyt-2 [Caenorhabditis elegans	0.556	0.427	0.271	5.5e-32
MGI|MGI:1261845	845	Esyt2 "extended synaptotagmin-	0.806	0.523	0.252	1.3e-29
UNIPROTKB|A0FGR8	921	ESYT2 "Extended synaptotagmin-	0.748	0.445	0.250	4.6e-28

TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)]

 Score = 1759 (624.3 bits), Expect = 3.0e-181, P = 3.0e-181
 Identities = 323/518 (62%), Positives = 410/518 (79%)

Query:    30 IYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLD 89
             IYS+P+    E P   PL E     L DLLP+IPLW+KNPDYERVDW N+F+S MWPYLD
Sbjct:    29 IYSQPSHQ--EYPPARPLVETSISVLLDLLPDIPLWMKNPDYERVDWFNKFISYMWPYLD 86

Query:    90 KAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPAL 149
             KA+C  +R++ QP+F +Y G F IESIEFENL+LGTLPPT++G++ YETNE +L+ EP++
Sbjct:    87 KAVCGIIRSSVQPLFADYIGTFCIESIEFENLSLGTLPPTVHGVKFYETNEKELLFEPSI 146

Query:   150 RWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVD 209
             +WAGNPNIVLVLK+LS RI VQLVDLQ FA  R+ LKPL+PTFPCF  +VVSLME+PHVD
Sbjct:   147 KWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRVALKPLLPTFPCFGMVVVSLMEKPHVD 206

Query:   210 FGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVK 269
             FG+K+LGGD+MSIPGLY+++Q+ I + V+ +Y WPQ  EIPILD+S+ ++KKPVG+LHV 
Sbjct:   207 FGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHWPQVLEIPILDSSTASVKKPVGLLHVS 266

Query:   270 VVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQI 329
             ++RA  LLKKD LGTSDPYVKLSLTGE                EWNE+FKL+VK+P SQ+
Sbjct:   267 ILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQV 326

Query:   330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI-SDPKDMKQRGKIVV 388
             LQL+VFDWDKVGGHDRLGMQ++PL+ + P E KEF LDL+K++N+  D  D K+RG++ V
Sbjct:   327 LQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKEFNLDLIKNSNVVMDSGDKKKRGRLEV 386

Query:   389 ELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGEN-HN 447
             +L YVPF+E+SIK     +K SR+      S D++ LS AGLLSV VQ A+DVEG+  H+
Sbjct:   387 DLRYVPFREESIK----RRKESRE---EKSSEDDDFLSQAGLLSVAVQSAKDVEGKKKHS 439

Query:   448 NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKE 507
             NPYA++L++G+KK+TKM++KTRDP WNEEFQF L+EPP+ E I +EVMSK TG  F SKE
Sbjct:   440 NPYAVVLFRGEKKKTKMLKKTRDPRWNEEFQFTLEEPPVKESIRVEVMSKGTGFHFRSKE 499

Query:   508 SLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRW 545
              LGHV+INL DVV NGRIN+KYHLINS+ G+IH++IRW
Sbjct:   500 ELGHVDINLDDVVDNGRINQKYHLINSRNGIIHIEIRW 537

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1409 (501.1 bits), Expect = 3.6e-144, P = 3.6e-144
 Identities = 261/517 (50%), Positives = 369/517 (71%)

Query:    30 IYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLD 89
             IY +  D  VE+P + PL ELD+  +  + PEIP+WVKNPD++R+DWLN+ +  MWPY+D
Sbjct:    29 IYFQSTD--VEDPEIKPLVELDSETIATMFPEIPMWVKNPDFDRIDWLNKLIGHMWPYMD 86

Query:    90 KAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPAL 149
             KAIC   ++ A+PI  E    +KI+S+EFE LTLG+LPP+  G++VY T++ +++ME ++
Sbjct:    87 KAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTLGSLPPSFQGMKVYATDDKEIIMELSV 146

Query:   150 RWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVD 209
             +WAGNPNI++V K    + TVQ++DLQ++A PRITLKPLVP+FPCFA + VSLM++P VD
Sbjct:   147 KWAGNPNIIVVAKAFGLKATVQVIDLQVYATPRITLKPLVPSFPCFANIFVSLMDKPQVD 206

Query:   210 FGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVK 269
             FG+K+LG D+M+IPGLY+F+Q+ I   VA +Y+WP+T  + I+D S  A+KKPVG+L VK
Sbjct:   207 FGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLWPKTLNVQIMDPSK-AMKKPVGLLSVK 265

Query:   270 VVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQI 329
             V++A KL KKD LG SDPYVKL+L+G+                EWNE F LVVKEPESQ 
Sbjct:   266 VIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTVVKHSNLNPEWNEEFDLVVKEPESQE 325

Query:   330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVE 389
             LQL V+DW++VG HD++GM ++ LK LTP E K  TL+LLK     +P   K RG++VVE
Sbjct:   326 LQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLMTLELLKSMEPKEPVSEKSRGQLVVE 385

Query:   390 LTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNP 449
             + Y PFK+D I  +        K       + E   S  GLL V+V  AED+EG+ H NP
Sbjct:   386 VEYKPFKDDDIPENIDDPNAVEK-------APEGTPSTGGLLVVIVHEAEDLEGKYHTNP 438

Query:   450 YAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESL 509
                +L++G++++TK ++K R+P W+E+FQF LDEPP+++K+H+EV+S  + +    KE+L
Sbjct:   439 SVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPINDKLHVEVISSSSRL-IHPKETL 497

Query:   510 GHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWK 546
             G+V INL DVV N RIN+KYHLI+SK G I ++++W+
Sbjct:   498 GYVVINLGDVVSNRRINDKYHLIDSKNGRIQIELQWR 534

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009306 "protein secretion" evidence=IMP

TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 159/507 (31%), Positives = 273/507 (53%)

Query:    58 LLPEI-PLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESI 116
             L PE  P WV   + +++ WLN  L+ +WPY+D+A    ++ + +P+ ++Y     + S+
Sbjct:    54 LPPEFYPSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASL 112

Query:   117 EFENLTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLK-LLSFRITVQLVDL 175
              F  LTLGT+ P   G+ V + ++N + +E  ++W GNPNIVL +K L+   + +Q+ ++
Sbjct:   113 TFSKLTLGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNI 172

Query:   176 QIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITK 235
                   R+  +PLV  FPCF  + VSL E+  +DF +K++GGDI +IPGL + I++ I  
Sbjct:   173 GFTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRD 232

Query:   236 YVAGIYIWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSL 293
              V     WP    IPI+  D S + +K PVG+L VK+V+A  L  KD +G SDP+ K+ +
Sbjct:   233 AVEDSITWPVRKVIPIIPGDYSDLELK-PVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFI 291

Query:   294 TGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
                                 WNE+F+ VV++  +Q L ++++D + V   + +G   + L
Sbjct:   292 RPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRL 351

Query:   354 KLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE-DSI--KFSSVSKKYS 410
               L P + K+  L L+K   I   +D K RG++ +EL Y+P+   + I   F + S    
Sbjct:   352 CELEPGKVKDVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSL 409

Query:   411 RKGSGNDQSSDEEALSGA-------GLLSVLVQGAEDVEGEN---HNNPYAIILYK--GD 458
              +   ND + +E A S         G+LSV V  AE++  ++     +PY ++  K  G 
Sbjct:   410 ERVLKNDTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGA 469

Query:   459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTD 518
             K +T+++  + +P WN+ F F++++  LH+ + +EV    T    + K+ +G   + LT 
Sbjct:   470 KSKTRVVNDSLNPVWNQTFDFVVEDG-LHDMLVLEVWDHDT----FGKDYIGRCILTLTR 524

Query:   519 VVHNGRINEKYHLINSKRGVIHVDIRW 545
             V+      + Y L  SK G + + ++W
Sbjct:   525 VIMEEEYKDWYPLDESKTGKLQLHLKW 551

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0012505 "endomembrane system" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 154/512 (30%), Positives = 258/512 (50%)

Query:    58 LLPE--IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIES 115
             LLP    P WV     ++++WLN  L  +WPY+++A    ++++ +P+ ++Y+    + S
Sbjct:    53 LLPGDFYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LAS 111

Query:   116 IEFENLTLGTLPPTIYGIRVYETNE--NQLVMEPALRWAGNPNIVLVLK-LLSFRITVQL 172
             ++F   TLGT+ P   G+ + E+    N + ME  ++W GNP IVL +K LL   + +++
Sbjct:   112 LKFSKFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEV 171

Query:   173 VDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKC 232
              ++      R+  KPLV  FPCF  +  SL E+  +DF +K++GG++ SIPG+   I++ 
Sbjct:   172 KNIGFTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEET 231

Query:   233 ITKYVAGIYIWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVK 290
             I   +     WP    IPIL  D S + +K PVG L VKVV+A  L  KD +G SDPY  
Sbjct:   232 IRDAIEDSITWPVRKIIPILPGDYSDLELK-PVGKLDVKVVQAKDLANKDMIGKSDPYAI 290

Query:   291 LSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQL 350
             + +                    WNE+F+ +V++  +Q L ++VFD + VG    +G   
Sbjct:   291 VFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQ 350

Query:   351 VPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF-KEDSIK--FS---- 403
             VPL  L P + K+  L L+K   I   +D K RG++ +EL Y P  KE  +K  F+    
Sbjct:   351 VPLNELVPGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYS 408

Query:   404 -SVSKKYSRKGSGNDQSSDEEALSGA--------GLLSVLVQGAEDVEGENH-NNPYAII 453
              ++ +K  +  S +  ++D + L  +        G+LSV V  AED+   +      A +
Sbjct:   409 LTILEKVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFV 468

Query:   454 LYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVE 513
             +    K  TK   +    + N  +    D   + + +H  +  +      + K+ +G V 
Sbjct:   469 VITLKKSETKSKTRVVPDSLNPVWNQTFDFV-VEDALHDLLTLEVWDHDKFGKDKIGRVI 527

Query:   514 INLTDVVHNGRINEKYHLINSKRGVIHVDIRW 545
             + LT V+  G   E + L  +K G + V ++W
Sbjct:   528 MTLTRVMLEGEFQEWFELDGAKSGKLCVHLKW 559

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2047027 AT2G21010 "AT2G21010" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 112/268 (41%), Positives = 175/268 (65%)

Query:   282 LGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVG 341
             +G  +PYV++ L+ +                EWNE FK  V++P++Q+L+  V+ W+K+G
Sbjct:     1 MGMINPYVQIELSEDKISSKKTTVKHKNLNPEWNEEFKFSVRDPKTQVLEFNVYGWEKIG 60

Query:   342 GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDP-KDMKQRGKIVVELTYVPFKEDSI 400
              HD++GM ++ LK L P E K FTL+L K  +  +  +  K RGK+ VEL Y PF E+ +
Sbjct:    61 KHDKMGMNVLALKELAPDERKAFTLELRKTLDGGEEGQPGKYRGKLEVELLYKPFTEEEM 120

Query:   401 KFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKK 460
             +  +V K  + +G+          ++G G+L V+V  AEDVEG++H NPY  I +KG+++
Sbjct:   121 Q--AVQK--APEGT---------PVAG-GMLVVIVHSAEDVEGKHHTNPYVHIYFKGEER 166

Query:   461 RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS--KRTGIRFWSKESLGHVEINLTD 518
             +TK ++K +DP WNEEF FML+EPP+HEK+H+EV S   R G+    KE+LG+V+I + D
Sbjct:   167 KTKNVKKNKDPKWNEEFSFMLEEPPVHEKLHVEVFSTSSRIGL-LHPKETLGYVDIPVVD 225

Query:   519 VVHNGRINEKYHLINSKRGVIHVDIRWK 546
             VV+N R+N+K+HLI+SK G I +++ W+
Sbjct:   226 VVNNKRMNQKFHLIDSKNGKIQIELDWQ 253

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 126/353 (35%), Positives = 191/353 (54%)

Query:    63 PLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLT 122
             P W+  P +E+V WLN+ LS MWPY+ +A    +R + +P+ ++Y     I S++F  LT
Sbjct:    59 PQWISFPAFEQVKWLNKLLSKMWPYIAEAATMVIRDSVEPLLEDYRPP-GITSLKFSKLT 117

Query:   123 LGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPR 182
             LG + P I GIRV    E Q+ M+  LRW G+PNIVL +  L   I +QL DLQ+F   R
Sbjct:   118 LGNVAPKIEGIRVQSFKEGQVTMDVDLRWGGDPNIVLGVTALVASIPIQLKDLQVFTVAR 177

Query:   183 ITLKPLVPTFPCFATMVVSLME--RPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
             +  + L    PC + +VV+L+   +P +D+ +K +GG + +IPGL   I   +   V  +
Sbjct:   178 VIFQ-LADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVDTIVKDM 236

Query:   241 YIWPQTYEIPI----LDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE 296
               WP    +PI    +D S + +K P G L V VV+A+ L  K+ +G SDPY  + +   
Sbjct:   237 LQWPHRIVVPIGGIPVDLSDLELK-PQGKLIVTVVKATNLKNKELIGKSDPYATIYI--R 293

Query:   297 XXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
                              W++ F+L+ ++ E+Q L ++VFD D VG  +RLG+  +PL  L
Sbjct:   294 PVFKYKTKAIENNLNPVWDQTFELIAEDKETQSLTVEVFDKD-VGQDERLGLVKLPLSSL 352

Query:   357 TPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF-KEDSIKFSSVSKK 408
                 TKE  L+LL   +    KD K RG I +++ Y  F KE+ +      KK
Sbjct:   353 EAGVTKELELNLLSSLDTLKVKDKKDRGSITLKVHYHEFNKEEQMAALEDEKK 405

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008289 "lipid binding" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

FB|FBgn0039208 Esyt2 [Drosophila melanogaster (taxid:7227)]

 Score = 365 (133.5 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
 Identities = 110/452 (24%), Positives = 203/452 (44%)

Query:    59 LPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEF 118
             + E+P WV  PD ER +WLN+ L  +WP  +      V+ T +P        +K+    F
Sbjct:   143 IDELPAWVYFPDVERCEWLNKILKQVWPNANHFARTLVKETIEPNVALALANYKMHGFRF 202

Query:   119 ENLTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQ 176
             + + LGT+PP I G+++Y+ N   N+++M+  L +A + +I   L  +   I     D Q
Sbjct:   203 DRIILGTIPPRIGGVKIYDKNVDRNEIIMDLDLFYASDCDINFYLGGMKGGIK----DFQ 258

Query:   177 IFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGG-DIMSIPGLYQFIQKCITK 235
             I    R+ +KPL+ + P    + +  +  P++DF +  +G  D M +PGL   +++ I +
Sbjct:   259 IHGWVRVVMKPLIRSMPLVGGLQIFFLNNPNIDFNL--VGVIDFMDMPGLSDLLRRIIVE 316

Query:   236 YVAGIYIWPQTYEIPILD-ASSVAIK--KPVGILHVKVVRASKLLKKDFL----GTSDPY 288
              +  + + P    I + +  S+VA+K  +P GIL + VV A  L+KKD      G SDPY
Sbjct:   317 QIGNVMVLPNKLPISLSEEVSAVALKMPEPEGILRIHVVEAKDLMKKDISVLGKGKSDPY 376

Query:   289 VKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGM 348
               +++  +                 W E    +      Q +++Q+ D D     + LG 
Sbjct:   377 AIINVGAQEFKTQIIDNNVNPKWDYWCEATVFIEM---GQFVEIQLKDSDDSKKDENLGR 433

Query:   349 QLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKK 408
               + +  +     K+  +D      + D K     G + V L +     D      +  +
Sbjct:   434 ASIDIASVI----KKGVVD--SWLTLEDAK----HGLLHVRLQWYKLTADPNDLQQILLE 483

Query:   409 YSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKT 468
              ++       SS   A+    + S   +  +     +  +PY +      K++T MI + 
Sbjct:   484 -TQLLRVTSMSS---AVLSVFIDSA--RHLKQARSSSKPDPYLVCSVNKQKQQTAMIMRD 537

Query:   469 RDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG 500
               P W + F F++  P  +E ++I++  ++TG
Sbjct:   538 DSPVWEQGFTFLVSNPD-NESLNIKIYDQKTG 568

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 347 (127.2 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
 Identities = 89/328 (27%), Positives = 168/328 (51%)

Query:    59 LPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQP-IFDEYSGKFKIESIE 117
             L ++P WV+ PD ERV+WLN+ +  +WPY+ +     +     P +  +  G FK  + +
Sbjct:    72 LQDLPAWVQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQVKAQMPGMFK--NFK 129

Query:   118 FENLTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDL 175
             F  + +G +P  + GI+VY TN   ++++++  + +AG+ +  +      F  T  + ++
Sbjct:   130 FTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTV--SCCGF--TGGMNNI 185

Query:   176 QIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITK 235
             Q     R  LKPL+P  P    +  + +E P +DF +  +G +++ +PGL   I+  I  
Sbjct:   186 QFSGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMVELPGLIDAIRSVINS 244

Query:   236 YVAGIYIWPQTYEIPI---LDASSVAIKKPVGILHVKVVRASKLLKKD--FL--GTSDPY 288
              +A + + P    +P+   +D + +   +P G++ +K++ A  L  +D  F+  G SDPY
Sbjct:   245 QIAALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLENRDISFIKKGKSDPY 304

Query:   289 VKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGM 348
              ++ +  +                 WNE F+ VV + + Q L++++FD D+ G  + LG 
Sbjct:   305 AEIQVGSQFFKTRTIDDDLNPI---WNEYFEAVVDQADGQKLRIELFDEDQ-GKDEELGR 360

Query:   349 QLVPLKLLTPHET--KEFTLDLLKHTNI 374
               V LKL+    T  K + L+  KH ++
Sbjct:   361 LSVDLKLVQAKGTIDKWYPLEGCKHGDL 388

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

MGI|MGI:1261845 Esyt2 "extended synaptotagmin-like protein 2" [Mus musculus (taxid:10090)]

 Score = 352 (129.0 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 124/491 (25%), Positives = 226/491 (46%)

Query:    61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
             ++P WV  PD ER +WLN+ +  MWP++ + I    R T +P          + +  F  
Sbjct:   106 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVR--GANAHLSTFSFTK 163

Query:   121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
             + +G  P  + G++VY  N  + Q++++  + + GN  I L +K    R  V+   +QI 
Sbjct:   164 VDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIH 221

Query:   179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
                R+ L+PL+   P    + +  + +P ++     L  +++ IPGL       I   ++
Sbjct:   222 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLT-NLLDIPGLNGLSDTIILDIIS 280

Query:   239 GIYIWPQTYEIPILDASSVA-IKKPV--GILHVKVVRASKLLKKD-FL-----GTSDPYV 289
                + P    +P++    +A ++ P+  G+L +  + A  L  KD +L     G SDPY 
Sbjct:   281 NYLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 340

Query:   290 KLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
              + +  +                +WNE ++ +V E   Q L++++FD D     D LG  
Sbjct:   341 IIRVGNQIFQSKVIKENLSP---KWNEVYEALVYEHPGQELEIELFDEDP-DKDDFLGSL 396

Query:   350 LVPLKLLTPHETKE--FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSK 407
             ++ L  +      +  FTLD +       PK     GK+ ++L ++    D+   +++ K
Sbjct:   397 MIDLIEVEKERLLDEWFTLDEV-------PK-----GKLHLKLEWLTLMPDA---ANLDK 441

Query:   408 KYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDV-EGENHN-NPYAII-LYKGDKKRTKM 464
               +   +  DQ+SD   LS A LL + +  A ++  G+  N NP  ++ +  G K +   
Sbjct:   442 VLADIRADKDQASD--GLSSA-LLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESK 498

Query:   465 IR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNG 523
             IR KT +P W E F F +  P   + + +EV  ++      S  SL  + ++      N 
Sbjct:   499 IRYKTSEPVWEENFTFFIHNPR-RQDLEVEVKDEQHQC---SLGSL-RIPLSQLLTSDNM 553

Query:   524 RINEKYHLINS 534
              IN+++ L NS
Sbjct:   554 TINQRFQLSNS 564

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A0FGR8 ESYT2 "Extended synaptotagmin-2" [Homo sapiens (taxid:9606)]

 Score = 340 (124.7 bits), Expect = 4.6e-28, P = 4.6e-28
 Identities = 114/455 (25%), Positives = 210/455 (46%)

Query:    61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
             ++P WV  PD ER +WLN+ +  MWP++ + I    R T +P          + +  F  
Sbjct:   182 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVR--GANTHLSTFSFTK 239

Query:   121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
             + +G  P  I G++VY  N  + Q++++  + + GN  I L +K    R  V+   +QI 
Sbjct:   240 VDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIH 297

Query:   179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
                R+ L+PL+   P    + +  + +P ++     L  +++ +PGL       I   ++
Sbjct:   298 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLT-NLLDVPGLNGLSDTIILDIIS 356

Query:   239 GIYIWPQTYEIPILDASSVA-IKKPV--GILHVKVVRASKLLKKD-FL-----GTSDPYV 289
                + P    +P++    +A ++ PV  G+L +  + A  L  KD +L     G SDPY 
Sbjct:   357 NYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 416

Query:   290 KLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
              + +  +                +WNE ++ +V E   Q L++++FD D     D LG  
Sbjct:   417 IIRVGNQIFQSRVIKENLSP---KWNEVYEALVYEHPGQELEIELFDEDP-DKDDFLGSL 472

Query:   350 LVPLKLLTPHETKE--FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSK 407
             ++ L  +      +  FTLD +       PK     GK+ + L ++    ++   S++ K
Sbjct:   473 MIDLIEVEKERLLDEWFTLDEV-------PK-----GKLHLRLEWLTLMPNA---SNLDK 517

Query:   408 KYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDV-EGEN-HNNPYAII-LYKGDKKRTKM 464
               +   +  DQ++D   LS A LL + +  A ++  G+   +NP  ++ +  G K +   
Sbjct:   518 VLTDIKADKDQAND--GLSSA-LLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESK 574

Query:   465 IR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR 498
             IR KT +P W E F F +  P   + + +EV  ++
Sbjct:   575 IRYKTNEPVWEENFTFFIHNPK-RQDLEVEVRDEQ 608

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XA06	SYT3_ARATH	No assigned EC number	0.6459	0.9744	0.9888	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	548
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-44
pfam00168	85	pfam00168, C2, C2 domain	4e-28
cd00030	102	cd00030, C2, C2 domain	2e-26
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-25
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	7e-23
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	1e-19
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-19
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	3e-18
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	4e-17
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	6e-17
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	6e-17
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	2e-16
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	8e-16
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-15
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-15
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	2e-15
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	6e-15
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	4e-14
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	5e-14
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-13
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-13
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	2e-13
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	3e-13
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	3e-13
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	3e-13
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	4e-13
smart00239	101	smart00239, C2, Protein kinase C conserved region	5e-13
cd00030	102	cd00030, C2, C2 domain	8e-13
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	1e-12
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	1e-12
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	1e-12
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	3e-12
pfam00168	85	pfam00168, C2, C2 domain	5e-12
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	8e-12
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-11
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	4e-11
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	7e-11
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-10
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	2e-10
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	2e-10
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	3e-10
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	3e-10
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	3e-10
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	3e-10
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	5e-10
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	7e-10
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	9e-10
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	1e-09
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	1e-09
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-09
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	3e-09
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	5e-09
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	7e-09
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	2e-08
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	3e-08
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	3e-08
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	5e-08
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	5e-08
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	8e-08
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	1e-07
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	1e-07
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-07
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	6e-07
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	6e-07
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	6e-07
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	8e-07
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	8e-07
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	9e-07
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-06
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	3e-06
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	3e-06
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	4e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	6e-06
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	6e-06
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	7e-06
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-05
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-05
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	2e-05
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	2e-05
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	3e-05
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	4e-05
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	5e-05
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	5e-05
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	7e-05
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	8e-05
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	1e-04
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	2e-04
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	2e-04
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	2e-04
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	2e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	2e-04
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	3e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	3e-04
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	3e-04
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	4e-04
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	4e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	8e-04
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	8e-04
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	0.001
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	0.002
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	0.002
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	0.003
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	0.004

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score =  168 bits (426), Expect = 4e-44
 Identities = 142/592 (23%), Positives = 235/592 (39%), Gaps = 107/592 (18%)

Query: 2   GFLSSVLGVLGFGFIGLPLGLLVGFFLFI-----YSKPNDDQVEEPLVTPLCELDTIPLF 56
              S + G LGF F  L   +LV  +++        +   D V++ L     E       
Sbjct: 165 SVASWIFGYLGFSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQELSEEKLE------- 217

Query: 57  DLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESI 116
                        DYE V+WLN FL   WP ++ +I   V         E    F I+++
Sbjct: 218 ------------NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDAL 264

Query: 117 EFENLTLGTLPPTIYGIRVY-ETNENQLVME---------------PALRWAGNPNIVLV 160
             +  TLG+ PP I GIR Y  T  + +VM+                + R + NP I LV
Sbjct: 265 ALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLV 324

Query: 161 LKL----LSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG 216
           +K      SF + + + DL      R+ ++ L+  +P   T+   L+E P  DF +  LG
Sbjct: 325 VKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLG 383

Query: 217 G-----DIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVV 271
           G     DI +IPGL +FIQ+ I   +  + + P +  I I    +      +G++ VK+ 
Sbjct: 384 GDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIK 443

Query: 272 RASKLLKKDFL--GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQI 329
            A  L K D    GT DPY+ ++ +   +   KT VKK  LNP WNE F +++    +  
Sbjct: 444 SAEGLKKSDSTINGTVDPYITVTFSDRVIG--KTRVKKNTLNPVWNETFYILL-NSFTDP 500

Query: 330 LQLQVFDWDKVGGHDRLGMQLVPLKLL-----TPHETKEFTLDLLKHTNISDPKDMKQRG 384
           L L ++D++       +G   + L LL       +E  EF              + K  G
Sbjct: 501 LNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLR------------NTKNVG 548

Query: 385 KIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE 444
           ++  +L + P  ED         K   KGS           S  G+L V ++  + ++  
Sbjct: 549 RLTYDLRFFPVIED---------KKELKGSVEPLED-----SNTGILKVTLREVKALDEL 594

Query: 445 NHNNPYAIILYKGDKKR---TKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGI 501
           +            + K    T  ++ T  P+WN ++        + ++       K + I
Sbjct: 595 SSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQY-----NVLVTDR-------KNSSI 642

Query: 502 RF-----WSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWKMI 548
           +       S + +      L D++           + + +G I +   WK I
Sbjct: 643 KVVTFDVQSGKVIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPI 694

Length = 1227

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score =  106 bits (268), Expect = 4e-28
 Identities = 40/83 (48%), Positives = 50/83 (60%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           L V V+ A  L  KD  G SDPYVK+SL G+K   KKT V K  LNP WNE F   V  P
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 326 ESQILQLQVFDWDKVGGHDRLGM 348
           E   L+++V+D+D+ G  D +G 
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGE 83

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  102 bits (257), Expect = 2e-26
 Identities = 46/104 (44%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           L V V+ A  L  KD  G SDPYVK+SL G++    KT V K  LNP WNE F+  V +P
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQ--KFKTKVVKNTLNPVWNETFEFPVLDP 58

Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPHETKEFTLDL 368
           ES  L ++V+D D+    D LG   +PL  LL   +  E  L L
Sbjct: 59  ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 99.5 bits (248), Expect = 3e-25
 Identities = 41/90 (45%), Positives = 53/90 (58%)

Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
            L VK++ A  L  KD  G SDPYVK+SL G+    KKT V K  LNP WNE F+  V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
           PE   L+++V+D D+ G  D +G   +PL 
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLS 90

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 93.4 bits (233), Expect = 7e-23
 Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 2/103 (1%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           L V V+ A  L   D  G SDP+VK  L GEK+   KT   KK LNP WNE+F++ V   
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKV--FKTKTIKKTLNPVWNESFEVPVPSR 58

Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
              +L+++V+DWD+ G  D LG   + L  L P ET E TL L
Sbjct: 59  VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 85.5 bits (212), Expect = 1e-19
 Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 5/85 (5%)

Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
           +G+L V+VVR + L  +DF  +SDPYV L+L  +K+   KT V KKNLNP WNE   L V
Sbjct: 1   LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKV---KTRVIKKNLNPVWNEELTLSV 56

Query: 323 KEPESQILQLQVFDWDKVGGHDRLG 347
             P + + +L+VFD D     D +G
Sbjct: 57  PNPMAPL-KLEVFDKDTFSKDDSMG 80

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 11/120 (9%)

Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK----TTVKKKNLN 311
           SV+       L +K+++A +L  KDF GTSDP+VK+ L    LP KK    T VK+KNLN
Sbjct: 8   SVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYL----LPDKKHKLETKVKRKNLN 63

Query: 312 PEWNENFK---LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
           P WNE F       ++ + ++L LQV D+D+   +D +G   +PL  +   E + F  DL
Sbjct: 64  PHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 6/108 (5%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
           LH  ++RA  L   D  G SDPYVKL+L     K    +T    K  NPE+NE       
Sbjct: 17  LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76

Query: 324 EPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
             E    + L+L V D D+  G+D LG   +PLK L P++TK+F + L
Sbjct: 77  TEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           L   V+ A  L  KD  GTSDP+V++   G+ L   +T+V KK+  P WNE F+  + E 
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTL---ETSVVKKSCYPRWNEVFEFELMEG 58

Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLL--TPHETKEFTL 366
               L ++V+DWD V  +D LG  +  ++ L     E   F L
Sbjct: 59  ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRL 101

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 76.9 bits (190), Expect = 6e-17
 Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 11/105 (10%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK----TTVKKKNLNPEWNENF--K 319
           L V +++A+ L   D  GTSDPYVK+ L    LP KK    T V +K LNP +NE F  K
Sbjct: 18  LTVGIIQAADLPAMDMGGTSDPYVKVYL----LPDKKKKFETKVHRKTLNPVFNETFTFK 73

Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKL-LTPHETKE 363
           +   E  ++ L   V+D+D+   HD +G   VPL      H T+E
Sbjct: 74  VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEE 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 77.0 bits (190), Expect = 6e-17
 Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPWKKTTVKKKNLNPEWNENFKL 320
           IL VKV+    L KKD  G SDPYVK+SL       ++   +T   KK LNP+WNE F  
Sbjct: 1   ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
            V   E ++L  +VFD +++   D LG   VPL
Sbjct: 61  RVNPREHRLL-FEVFDENRLTRDDFLGQVEVPL 92

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 8/90 (8%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
           G L V ++ A  L K D  G SDPYVK+ L   G++L  KKTT+KK+ LNP +NE+F   
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLG 347
           V  P  QI    L + V D+D++G +D +G
Sbjct: 75  V--PFEQIQKVHLIVTVLDYDRIGKNDPIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 73.5 bits (181), Expect = 8e-16
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 10/97 (10%)

Query: 264 GILHVKVVRASKLLKKD------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNEN 317
           G+L + V+ A  L+ KD        G SDPYV + +  +     K+ V K+NLNP+WNE 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTF---KSKVIKENLNPKWNEV 57

Query: 318 FKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
           ++ VV E   Q L++++FD D     D LG   + L 
Sbjct: 58  YEAVVDEVPGQELEIELFDED-PDKDDFLGRLSIDLG 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           L + +     L  +D  GTSDPYVK    G K  +K  T+  KNLNP W+E F L +++ 
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTI-YKNLNPVWDEKFTLPIEDV 59

Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK 385
            +Q L ++VFD+D+    D +G   V L  L  ++  E  L L       DP   +  G 
Sbjct: 60  -TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKL------EDPNSDEDLGY 112

Query: 386 IVVELTYVP 394
           I + +T  P
Sbjct: 113 ISLVVTLTP 121

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV 321
             L V ++R   L   D  G SDP+VKL L  +  K    KT VKKK LNPE+NE F   
Sbjct: 13  RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72

Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLG 347
           +K  +   + L++ V+D D    +D +G
Sbjct: 73  IKHSDLAKKTLEITVWDKDIGKSNDYIG 100

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
           G L VKV+RAS L   D  G SDP+  L L   +L   +T    K LNPEWN+ F   +K
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARL---QTHTIYKTLNPEWNKIFTFPIK 57

Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
           +    +L++ V+D DK    + LG   +PL  +   E K +    LK   +        +
Sbjct: 58  DIHD-VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYA---LKDKKLRTR----AK 109

Query: 384 GKIVVELTYV 393
           G I++E+  +
Sbjct: 110 GSILLEMDVI 119

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 71.3 bits (175), Expect = 6e-15
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 5/130 (3%)

Query: 264 GILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
           G+L V VV A  L  KD    G SDPY  LS+  ++    KT      LNP+WN   +  
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRF---KTQTIPNTLNPKWNYWCEFP 57

Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
           +   ++Q+L+L ++D D+  G D LG   + L+ +        +   +   +    K   
Sbjct: 58  IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117

Query: 382 QRGKIVVELT 391
             G+I ++ +
Sbjct: 118 VSGEIHLQFS 127

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 69.1 bits (170), Expect = 4e-14
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
           L V V++A  L   D  G SDPYVK+SL   G+KL  KKT+VKK  LNP +NE  +F + 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75

Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
            ++ E   L + V D D VG ++ +G
Sbjct: 76  AEQLEEVSLVITVVDKDSVGRNEVIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 68.3 bits (168), Expect = 5e-14
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 268 VKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPES 327
           V VVRA  L  KD  G SDPY+K+ L  +K+  +   +    LNP + + F+L    P +
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGN 62

Query: 328 QILQLQVFDWDKVGGHDRLG 347
            IL++ V D+D +G  D +G
Sbjct: 63  SILKISVMDYDLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 8/97 (8%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
             + V +++A  L   D  GTSDPYVK+ L    +++  KKT +KK+ LNP +NE+F   
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLGMQLVPLK 354
           +  P  ++    L + V D D++  +D +G   +  K
Sbjct: 75  I--PLERLRETTLIITVMDKDRLSRNDLIGKIYLGWK 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 73.3 bits (180), Expect = 2e-13
 Identities = 40/116 (34%), Positives = 52/116 (44%), Gaps = 2/116 (1%)

Query: 261  KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
            +  G L + +     L   D  G SDP+VKL L  + +   KT V KK LNP WNE F +
Sbjct: 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSV--YKTKVVKKTLNPVWNEEFTI 1094

Query: 321  VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
             V      +L + V DWD    +D LG   + L  L P  T    + L   T I  
Sbjct: 1095 EVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVL 1150

Length = 1227

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL---TGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
           L V+V+RA+ + K D L T D YV+L L   + EK   K+T   K ++NP WNE F+  +
Sbjct: 2   LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEK---KRTKTIKNSINPVWNETFEFRI 58

Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
           +     +L+L V D D V   D LG  L  +  L   E    T  L
Sbjct: 59  QSQVKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSL 103

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 30/125 (24%)

Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKL-----------------------SLTGE 296
           + P+ +L V V+ A  LL KD  G SDPY  L                       ++  +
Sbjct: 24  EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKD 83

Query: 297 KLP---WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
            +P    K T VK + LNP WNE F+  V++  +  L L ++D D     D LG   +PL
Sbjct: 84  TVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHDD----DFLGCVNIPL 139

Query: 354 KLLTP 358
           K L  
Sbjct: 140 KDLPS 144

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
           ++ + +V    L   D  G SDPYVK  L  EK    K+ V  K LNP+W E F L + +
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFD 57

Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
            +SQIL+++V+D D     + +G   + L  L   +T    L+L
Sbjct: 58  DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 36/112 (32%), Positives = 66/112 (58%), Gaps = 2/112 (1%)

Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
           S+   K +GIL+VK+++A  L  +DF GT+DPY K+ L  ++   K++ + KK LNPE++
Sbjct: 8   SLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD 67

Query: 316 ENFKLVVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFT 365
           E+F   V   E   + L++ ++D+D+    + +G+  +PL  +   E  +  
Sbjct: 68  ESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLW 119

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 66.1 bits (162), Expect = 4e-13
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
           L V+V  A  L+  D  G SDPYVKL L    +    +KT   KK LNP WNE F   +K
Sbjct: 15  LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74

Query: 324 -EPESQILQLQVFDWDKVGGHDRLG 347
              + + L ++V+DWD+   +D +G
Sbjct: 75  PADKDRRLSIEVWDWDRTTRNDFMG 99

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 64.8 bits (158), Expect = 5e-13
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 10/102 (9%)

Query: 430 LLSVLVQGAEDVEGENHN---NPYAIILYKGD---KKRTKMIRKTRDPAWNEEFQFMLDE 483
            L+V +  A ++  ++     +PY  +   GD   KK+TK+++ T +P WNE F+F +  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 484 PPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRI 525
           P L E + IEV  K    RF   + +G V I L+D++  GR 
Sbjct: 61  PELAE-LEIEVYDKD---RFGRDDFIGQVTIPLSDLLLGGRH 98

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 64.4 bits (157), Expect = 8e-13
 Identities = 32/106 (30%), Positives = 59/106 (55%), Gaps = 8/106 (7%)

Query: 431 LSVLVQGAEDVEGENHN---NPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPL 486
           L V V  A ++  ++ N   +PY  +   G +K +TK+++ T +P WNE F+F + +P  
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE- 59

Query: 487 HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532
            + + +EV  K    RF   + LG VEI L++++ +G+  E +  +
Sbjct: 60  SDTLTVEVWDKD---RFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 4/89 (4%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNEN--FK 319
           G L + +++A  L   D  G SDPYVK+SL   G +L  KKT+VKK  LNP +NE   F 
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGM 348
           +  +  ++  L + V D+D+VG ++ +G+
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVGHNELIGV 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 271 VRASKLLKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKNLNPEWNENFKLVV----- 322
               KL KKDF G SDP++++S   E   W    +T V K  LNP W   F + +     
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCN 65

Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTL 366
            + +  I +++V+D+D  G HD +G     L  L      EF L
Sbjct: 66  GDYDRPI-KIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFEL 108

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 268 VKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPES 327
           +++VRA  L      G SDPYV L  T  K    KT      LNP W+E F+L V   E 
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 328 QILQLQVFDWDKVGGHDRLG---MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRG 384
             +   V+D   VG HD  G   ++L P +       +E  LDL       D +     G
Sbjct: 65  LWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-------DTQ-----G 112

Query: 385 KIVVELT 391
           ++++ ++
Sbjct: 113 RLLLRVS 119

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           + + V+ A  L K+D     DP+  +++ G +     T V KK L+P+WNE+F L V   
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQT--HSTDVAKKTLDPKWNEHFDLTVG-- 57

Query: 326 ESQILQLQVFDWDKVGGHDR--LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
            S I+ +QVFD  K    D+  LG   +    + P +   +    L+    SD  ++  R
Sbjct: 58  PSSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSD--NLSVR 115

Query: 384 GKIVVEL 390
           GKIVV L
Sbjct: 116 GKIVVSL 122

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 61.5 bits (150), Expect = 5e-12
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 431 LSVLVQGAEDVEGENHN---NPYAIILY---KGDKKRTKMIRKTRDPAWNEEFQFMLDEP 484
           L V V  A+++  ++ N   +PY  +     K D K+TK+++ T +P WNE F F +  P
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 485 PLHEKIHIEVMSKRTGIRFWSKESLGHVE 513
            L E + IEV       RF   + +G V 
Sbjct: 61  ELAE-LRIEVYDYD---RFGKDDFIGEVT 85

Length = 85

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 62.3 bits (152), Expect = 8e-12
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKL 320
           G L V +     L   D     S+PYVK+ L  +K     +KT+VKK   NP +NE  K 
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73

Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK--LLTPHETKEFTL 366
            + + +  ++ LQL V+  D+ G +  LG   +PL    L   +++ + L
Sbjct: 74  HISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 17/107 (15%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENF------ 318
           L V+V+    L  K   GT DP+ +++L    K   K+T VKKK  NP ++E F      
Sbjct: 1   LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 319 ---------KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
                    K+  ++ E   L+++++    V G D LG   +PL+ L
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGL 106

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
           L V +++A  L  +   +   DP+VK+ L  ++    ++ VK+K  NP ++E F   V  
Sbjct: 16  LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75

Query: 325 PESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370
            E Q   L+L V+D D+   H  +G  L PLK L   +      DL  
Sbjct: 76  KELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENF--KLV 321
           L V V++A  L K D  G +DPYVK++L    +++  KKT VKK  LNP +NE+F   + 
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
            +E E   ++  V D D+V  ++ +G
Sbjct: 77  SEELEDISVEFLVLDSDRVTKNEVIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 7/98 (7%)

Query: 265 ILHVKVVRASKL--LKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKN-LNPEWNENF 318
            L +K++   +L   K D     DPYV++ + G         KT V K N  NP WNE F
Sbjct: 3   TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
           +  V  PE   L+  V+D D  G  D LG   +PL  L
Sbjct: 63  EFDVTVPELAFLRFVVYDEDS-GDDDFLGQACLPLDSL 99

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%)

Query: 270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ES 327
           VV    L      G  D   K++  G K   KKT V +  LNP WNE F+  +       
Sbjct: 2   VVSLKNLPGL--KGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPD 56

Query: 328 QILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIV 387
           + L++ V D++KVG +  +G   V L+ L      E T  LL      D         I 
Sbjct: 57  ESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLL------DSNGRPTGATIS 110

Query: 388 VELTYVP 394
           +E++Y P
Sbjct: 111 LEVSYQP 117

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 264 GILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
           G+L V + RA+ L K DF  G+SDPYV  S      P   T + +K+LNP W E + ++V
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 323 KEPESQI---LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK 362
              E +    L  +++D D+    DRLG   + LK L      
Sbjct: 61  TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDRNW 103

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
           L V V +   L   D     DPYV+L L     K   +KT+VKK NLNP ++E F+  V 
Sbjct: 18  LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77

Query: 324 EPESQILQLQVFDWDKVGGHDR----LGMQLVPLK--LLTPHETKEFTL 366
             E +   L V   +      R    LG  L+ L    L+   T+ + L
Sbjct: 78  LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 18/104 (17%)

Query: 265 ILHVKVVRA-------SKLLKKDFLGTS-------DPYVKLSLTGEKLPWKKTTVKKKNL 310
               K+ RA       S ++               DPYV++S  G+K+   KT+VKK + 
Sbjct: 1   RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV---KTSVKKNSY 57

Query: 311 NPEWNENFKLVVKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPL 353
           NPEWNE        P   + +++Q+ DWD+VG  D +G   + L
Sbjct: 58  NPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDL 101

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
           L V+++ A  LL  D  G+SDP+VK+ L        +P  KT VKKK L P ++E+F+  
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77

Query: 322 V----KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
           V       E  +L   V D+D +G +D  G   +PL  +
Sbjct: 78  VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
           P  +  V V  A  L K+D  G +DPYV +   GE +   ++ V+K  L+PE++      
Sbjct: 1   PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESV---RSPVQKDTLSPEFDTQAIFY 57

Query: 322 VKEPESQILQLQVFDWDK 339
            K+P S I  +QV  W+ 
Sbjct: 58  RKKPRSPIK-IQV--WNS 72

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           L + V  A KL         DPYV++++ G+  P KKT V KK  NP+WNE+F ++V   
Sbjct: 4   LQITVESA-KLKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVT-- 58

Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLL 369
               L+ +V+    +     LG   + L  +  +     E  + TL+L 
Sbjct: 59  PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLS 107

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           L V+VV A  L+ KD  G+S  YV+L   G+K   K+T  K K+LNP WNE     V +P
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDP 58

Query: 326 E---SQILQLQVFD 336
               + +L++ V++
Sbjct: 59  SRLSNLVLEVYVYN 72

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVV 322
           G L V ++ A  L   DFLG  DPYV +    ++   +K+ V K    NPEWNE FK  V
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTV 57

Query: 323 KEPESQI---LQLQVFDWDKVGGHDRLGMQLVPLK 354
           + P       L L++ D D     D +G   + LK
Sbjct: 58  EYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLK 92

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 20/132 (15%)

Query: 267 HVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKL---V 321
            V V++A  LL K   GT+D YV + L  EK     T+VK+K  +P W E  +F+L   +
Sbjct: 2   QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKY---STSVKEKTTSPVWKEECSFELPGLL 58

Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE----FTLDLLKHTNISDP 377
                   LQL V   + +G    LG   +PL  L   + +     F L+       S P
Sbjct: 59  SGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLE-------SKP 111

Query: 378 -KDMKQRGKIVV 388
            KD K+RG+I V
Sbjct: 112 GKDDKERGEIEV 123

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 10/107 (9%)

Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
           +L V +  A  L          PYV+L++       +K+ VK++  NP W E F  +V+ 
Sbjct: 1   LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRN 57

Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLK--LLTPHETKE--FTLD 367
           PE+Q L+++V D         LG   +PL   L  P  T +  F LD
Sbjct: 58  PENQELEIEVKDDKTGK---SLGSLTLPLSELLKEPDLTLDQPFPLD 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 12/134 (8%)

Query: 263 VGILHVKVVRASKLLKKDFLGTS-DPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
           +G+L V +  A  L   D +G + DPYV  S++  +    +T VKK   NP WNE   ++
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRREL-ARTKVKKDTSNPVWNETKYIL 59

Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPL-KLLTPHETKEFTLDLLKHTNISDPKDM 380
           V    ++ L L V+D++       +G     L  LL   E +  T +LL++         
Sbjct: 60  VNS-LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNG-------- 110

Query: 381 KQRGKIVVELTYVP 394
           K  G++  +L + P
Sbjct: 111 KPVGELNYDLRFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 17/99 (17%)

Query: 429 GLLSVLVQGAEDVEGEN-------HNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFML 481
           GLL V V     V G N        ++PY ++     K +T++I+K  +P WNEE    +
Sbjct: 2   GLLKVRV-----VRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSV 56

Query: 482 DEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVV 520
             P     + +EV  K     F   +S+G  EI+L  +V
Sbjct: 57  PNPMA--PLKLEVFDKD---TFSKDDSMGEAEIDLEPLV 90

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 449 PYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKES 508
           PY I+       ++K+I++  +P WNE ++ ++DE P  +++ IE+  +         + 
Sbjct: 30  PYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVP-GQELEIELFDEDPD----KDDF 84

Query: 509 LGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRW 545
           LG + I+L  V   G I+E   L + K G +H+ + W
Sbjct: 85  LGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 53.7 bits (130), Expect = 7e-09
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
           G+L + + +A+ L   + +G  DPYV++ + G      +T      LNP W+E   + V 
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVK--GRTVTISNTLNPVWDEVLYVPVT 58

Query: 324 EPESQILQLQVFDWDKVGGHDRL 346
            P +Q + L+V D++KV G DR 
Sbjct: 59  SP-NQKITLEVMDYEKV-GKDRS 79

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL-TGEKL-PWKKTTVKKKNLNPEWNENFKLV 321
           G L+V ++RA +LL+ D    SDP+VK+ L  G KL   KKT+  +  ++P +NE+F   
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73

Query: 322 VKEPESQILQLQVFDWD 338
           V + E + + L    + 
Sbjct: 74  VPQEELENVSLVFTVYG 90

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 431 LSVLVQGAEDV---EGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLH 487
           L V V  A+D+   +G+  ++ Y  + + G KKRT+   K  +P WNE+  F + +P   
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61

Query: 488 EK--IHIEVMSKRTGIRFWSKESLGHVEINLTDVV 520
               + + V + R   R   +  LG V I+ T  V
Sbjct: 62  SNLVLEVYVYNDRRSGR--RRSFLGRVRISGTSFV 94

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 41/97 (42%), Positives = 48/97 (49%), Gaps = 13/97 (13%)

Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK------KTTVKKKNLNPE 313
           K   G LHV V  A  L      GTSD +VK  L    LP K      KT V KK++NP 
Sbjct: 23  KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYL----LPDKSKKSKQKTPVVKKSVNPV 78

Query: 314 WNENF--KLVVKEPESQI-LQLQVFDWDKVGGHDRLG 347
           WN  F    V  E  SQ  L+L V+D DK+  +D LG
Sbjct: 79  WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLG 115

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 456 KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEK-IHIEVMSKRTGIRFWSKESLGHVEI 514
           K  +++T + +   +P ++E F+F +    L  + + + V + +       K+ LG V I
Sbjct: 51  KSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK-SFLSREKKLLGQVLI 109

Query: 515 NLTDV 519
           +L+D+
Sbjct: 110 DLSDL 114

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 429 GLLSVLVQGAEDVEGENHNN---PYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEP 484
           G L VL+  A+ ++  +      PY II  +  ++++K+ +   R+P WNE+F+F ++ P
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60

Query: 485 PLHEKIHI--EVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVD 542
                  +   +M K     F   + +G   I+L  +   G       L+ +K  V+  D
Sbjct: 61  GWGGDTKLILRIMDKDN---FSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKYNVVLED 117

Query: 543 IRWK 546
             +K
Sbjct: 118 DTYK 121

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 441 VEGENH-NNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFML-DEPPLHEKIHIEVMSKR 498
            +G++  N+ Y II    +K  T +  KT  P W EE  F L      +       ++  
Sbjct: 13  CKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVM 72

Query: 499 TGIRFWSKESLGHVEINLTDV--VHNGRINEKYHLINSK------RGVIHVDI 543
                   + LG V I L D+      R    + L +        RG I VDI
Sbjct: 73  HRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV 322
           LHV V++   L   D     SDPYVK  L  +K     +KT+VKKK LNP +NE  +  V
Sbjct: 17  LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76

Query: 323 KEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
           +  E  +++L L V+  D +G +  LG   V L
Sbjct: 77  EREELPTRVLNLSVWHRDSLGRNSFLGEVEVDL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
           +G L V +V    L   +  G SDPY ++S+  ++    KT V    LNP+WN + +  V
Sbjct: 14  IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFV 70

Query: 323 KEPESQILQLQVFDWDKVGGHDRLG 347
           K+ E  +L + VFD D     D LG
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLG 95

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           + + VV A  L+ KD  GTSDPYV + +   K   K+T    +NLNP WNE F       
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS 59

Query: 326 ESQILQLQVFDWD 338
             +I +++V+D D
Sbjct: 60  SDRI-KVRVWDED 71

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 438 AEDVEGENHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS 496
           A+D  G+  ++PYAI L  G ++ +T+ I  T +P WN   +F +     ++ + + +  
Sbjct: 15  AKDRSGKGKSDPYAI-LSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ-NQLLKLILWD 72

Query: 497 KRTGIRFWSKESLGHVEINLTDVVHNGRI 525
           K    RF  K+ LG  +I L +V  +G+ 
Sbjct: 73  K---DRFAGKDYLGEFDIALEEVFADGKT 98

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 13/99 (13%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK------KKNLNPEWNEN 317
             L V V++A  L  +D     +PYVK+ L    LP +    K      KK LNPEWN+ 
Sbjct: 16  SQLIVTVLQARDLPPRDDGSLRNPYVKVYL----LPDRSEKSKRRTKTVKKTLNPEWNQT 71

Query: 318 FKL-VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
           F+   V+      + L++ V+D+D+ G +D LG  ++ L
Sbjct: 72  FEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDL 110

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 267 HVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE 326
            V+V+ A +L+     G  DP VK+ + G+K   K T+VKK    P +NE F     E  
Sbjct: 7   RVRVIEARQLVG----GNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESP 59

Query: 327 S----QILQLQVFDWDKVGGHDRLG 347
                +I+++ V+D   +     +G
Sbjct: 60  DELFDKIIKISVYDSRSLRSDTLIG 84

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 19/127 (14%)

Query: 431 LSVLVQGAEDVEGENHN---NPYAII-LYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPP 485
           L + +  AED++  N       YA++ +    K+ T + R    +P WNE  +F LDE  
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61

Query: 486 LHE---KIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN--------S 534
           L +    + IEV  +R  +     + +G V + L D++       +   ++         
Sbjct: 62  LQQGRLALTIEVYCERPSL---GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK 118

Query: 535 KRGVIHV 541
            +GV++ 
Sbjct: 119 PQGVLNF 125

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 264 GILHVKVVRASKLLK-KDFLGTS---DPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK 319
           G++ +++   + L   K+   T    DP+V +S  G ++   +T+ ++  LNP +NE   
Sbjct: 1   GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF-GRRV--FRTSWRRHTLNPVFNERLA 57

Query: 320 LVVKEPESQI-LQLQVFDWDKVGGHDRLG 347
             V   E    +Q +V D DK   +D + 
Sbjct: 58  FEVYPHEKNFDIQFKVLDKDKFSFNDYVA 86

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK-KTTVKKKNLNPEWNENFKLVVKE 324
           L VK ++A      +  G+S+PY  L +  ++ P K +++ +K   NP W+E+F   +  
Sbjct: 1   LLVKNIKA--NGLSEAAGSSNPYCVLEM--DEPPQKYQSSTQKNTSNPFWDEHFLFELS- 55

Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRG 384
           P S+ L  +V+D  K      LG+ +VP   L  + +      L       D       G
Sbjct: 56  PNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSV----SG 111

Query: 385 KIVVELTYVP 394
            I VE  ++ 
Sbjct: 112 SITVEFLFME 121

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 14/126 (11%)

Query: 429 GLLSVLVQGAEDVEGE----NHNNPYAIILYKGDKK--RTKMIRKTRDPAWNEEFQFMLD 482
           G+L+V ++ A  ++G        +PY        ++  RTK+ + T +P WNE    +++
Sbjct: 2   GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN 61

Query: 483 EPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRI-NEKYHLI-NSK-RGVI 539
              L E +++ V       R    + +G  E +L+ ++ N    N   +L+ N K  G +
Sbjct: 62  S--LTEPLNLTVYDFN-DKR--KDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGEL 116

Query: 540 HVDIRW 545
           + D+R+
Sbjct: 117 NYDLRF 122

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 287 PYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344
           PYVK+ L  +K     +KT VKK  +NP +NE  K VV+       QLQV  W       
Sbjct: 39  PYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKR 98

Query: 345 R--LGMQLVPL 353
           R  LG  L+PL
Sbjct: 99  RVFLGEVLIPL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENF 318
           L V+V+  S L  K+  GT DPY  ++L    +K   K+T VKKK  NP+++E F
Sbjct: 2   LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAF 54

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 430 LLSVLVQGAED---VEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL 486
           LL V +  A++    +     +PY  +      +++K+  +T +P W E F F L   P 
Sbjct: 1   LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTF-LVRNPE 59

Query: 487 HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDV 519
           ++++ IEV   +TG      +SLG + + L+++
Sbjct: 60  NQELEIEVKDDKTG------KSLGSLTLPLSEL 86

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 452  IILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGH 511
            + L  G  ++TK++  +  P W E F +  D PP  +K+HI   SK T    + K SLG 
Sbjct: 2005 LTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT----FGKSSLGK 2060

Query: 512  VEINLTDVVHNGRINEKYHLI--NSKRG---VIHVDIRW 545
            V I +  VV  G  + +Y L   ++K G    + ++ +W
Sbjct: 2061 VTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQW 2099

Length = 2102

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 285 SDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV 340
           S+PYVK  L  +K     +KT++K+   NP +NE  K  +     E++ LQL V+ +D+ 
Sbjct: 37  SNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRF 96

Query: 341 GGHDRLGMQLVPL 353
           G +  LG   +PL
Sbjct: 97  GRNTFLGEVEIPL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
           L V VV+A  L+  +   T+DP+VK+ L   G K+  KKT+VK+ + NP +NE     V 
Sbjct: 17  LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVP 76

Query: 324 EPESQILQLQV 334
               Q L L+V
Sbjct: 77  AIVLQDLSLRV 87

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 428 AGLLSVLVQGAED---VEGENHNNPYA-IILYKGD----KKRTKMIRKTRDPAWNEEFQF 479
           A  L+V+V  A +    +G+  ++PY  + L +G     KK+T + + T +P +NE F F
Sbjct: 13  AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSF 72

Query: 480 MLDEPPLHE-KIHIEVMSKRTGIRFWSKESLGHVEI 514
            +    L E  + I V+ K         E +G V +
Sbjct: 73  DVPAEQLEEVSLVITVVDK---DSVGRNEVIGQVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 448 NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
           +P+  + Y G    T +++K+  P WNE F+F L E      + +EV
Sbjct: 22  DPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGAD-SPLSVEV 67

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 302 KTTVKKKNLNPEWN-ENFKLVVKEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
           KT V KK+LNP WN E F+  V + E Q   LQ++V D D    +D +G   + L  L
Sbjct: 35  KTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL 92

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 5/99 (5%)

Query: 250 PILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKN 309
           P ++++    ++ +  L V V+RA+ L   D+  ++D YVK+   G++   K+T V   N
Sbjct: 14  PNVNSNCCPTRRGLATLTVTVLRATGL-WGDYFTSTDGYVKVFFGGQE---KRTEVIWNN 69

Query: 310 LNPEWNENFKL-VVKEPESQILQLQVFDWDKVGGHDRLG 347
            NP WN  F    V+      L+ +V+D D     D LG
Sbjct: 70  NNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLG 108

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 432 SVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE 488
            V V  AE +  ++     +PY II  +G+  R+ + + T  P ++ +  F   +P    
Sbjct: 6   QVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RS 63

Query: 489 KIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRG 537
            I I+V +          E LG   ++     ++ +      L    R 
Sbjct: 64  PIKIQVWNSNL----LCDEFLGQATLSAD--PNDSQTLRTLPLRKRGRD 106

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 448 NPYAIILY----KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
           +P+A +      K D KRTK+ +KT +P ++E F F L     +EK   +V
Sbjct: 20  DPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKV 70

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 17/98 (17%)

Query: 449 PYAII-LYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGI 501
           PY  I LY        D  +TK I+KT +P WNEEF F ++  P   ++  EV  +    
Sbjct: 23  PYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN--PREHRLLFEVFDEN--- 77

Query: 502 RFWSKESLGHVEINLTDVV-----HNGRINEKYHLINS 534
           R    + LG VE+ L ++      +  R   K +L+  
Sbjct: 78  RLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP 115

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKT-TVKKKNLNPEWNENFKLVV 322
           G L V V++A  L  K  L   DPY  L + G     KKT T  +   +PEW+E  +  +
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEI 57

Query: 323 KEPESQILQLQVFDWDK 339
            E +  IL++ VFD DK
Sbjct: 58  TEDKKPILKVAVFDDDK 74

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 12/95 (12%)

Query: 431 LSVLVQGAEDVEGENHNN---PYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPP- 485
           L+V V  AE++   + N    P+      G+K  +TK I+KT +P WNE F+  +  P  
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV--PSR 58

Query: 486 LHEKIHIEVMS-KRTGIRFWSKESLGHVEINLTDV 519
           +   + +EV    R G      + LG   I+L+D+
Sbjct: 59  VRAVLKVEVYDWDRGG----KDDLLGSAYIDLSDL 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
           L V V+RA  L + D   T   YVK+SL    + +  KKT V     +P +NE  +FK+ 
Sbjct: 17  LTVVVLRARGLRQLDHAHT-SVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVT 75

Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
            ++ ++  L L V     V     LG
Sbjct: 76  SRQLDTASLSLSVMQSGGVRKSKLLG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 441 VEGENHNN--PYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK- 497
             GE      PY  + + G K +T + + + +P WNE+  F    PPL E+I I++    
Sbjct: 27  FLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWD 86

Query: 498 RTGIRFWSKESLGHVEINLTDVVHNGR 524
           R G      + +G   I+L+ + ++G 
Sbjct: 87  RVGND----DVIGTHFIDLSKISNSGD 109

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 449 PYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEV--MSKRTGIRFWS 505
             A + ++G KK+T+++    +P WNE F++ L   P   E + I V    K    R   
Sbjct: 17  RIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRL-- 74

Query: 506 KESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDI 543
              +G   ++L D+V  G +     L++S        I
Sbjct: 75  ---IGSATVSLQDLVSEGLLEVTEPLLDSNGRPTGATI 109

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 431 LSVLVQGAEDVEGENHN--NPYAIILYKG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH 487
           L + V+ A+          +PY  +   G   K+T++ +KT +P WNE F  ++      
Sbjct: 4   LQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---Q 60

Query: 488 EKIHIEVMSKRTGIRFWSKESLGHVEINLTDVV--HNGRINE 527
             +  +V S  T     +   LG   ++L+D++  HNG++  
Sbjct: 61  STLEFKVWSHHT---LKADVLLGEASLDLSDILKNHNGKLEN 99

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 14/117 (11%)

Query: 429 GLLSVLVQGAED---VEGENHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEP 484
           G+L + ++ A D   +EG    +PY  +L  G  K RT  I  T +P W+E     +  P
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP 60

Query: 485 PLHEKIHIEVM--SKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVI 539
             ++KI +EVM   K    R     SLG VEIN++D++     + KY   + +   +
Sbjct: 61  --NQKITLEVMDYEKVGKDR-----SLGSVEINVSDLIKKN-EDGKYVEYDDEEERL 109

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 271 VRASKLLKKDFLGTSDPYVKLSL-TGEKLPWKK---TTVKKKNLNPEWNENFKLVVKEPE 326
           +    LL KD L  SDP+V + + TG    W +   T V K NLNP++   F +     E
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 327 SQILQLQVFDWD----KVGGHDRLG 347
            Q L+ +V+D D     +  HD LG
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLG 91

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 283 GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342
           G   PY +L L G+ +    T VKKK  NP WN + + +V +     + + V D D+   
Sbjct: 11  GLLSPYAELYLNGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKD-DRDRH 67

Query: 343 HDRLGMQLVPL 353
              LG   + L
Sbjct: 68  DPVLGSVSISL 78

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 13/114 (11%)

Query: 429 GLLSVLVQGAEDVEGENH---NNPYAIILYKGDKKRTKMIRKT-RDPAWNEEFQFML--D 482
           G L V+V  A ++  +      +PY ++   G  K+TK   +  + P W+EE +F +  D
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 483 EPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKR 536
           + P+ +   + V            + +G  E++L+  +  G  ++ Y L    R
Sbjct: 61  KKPILK---VAVFDDD----KRKPDLIGDTEVDLSPALKEGEFDDWYELTLKGR 107

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           L++++V    L  KD  G+SDPY  + +  E     +T    K LNP W E + + +  P
Sbjct: 2   LYIRIVEGKNLPAKDITGSSDPYCIVKVDNE--VIIRTATVWKTLNPFWGEEYTVHLP-P 58

Query: 326 ESQILQLQVFDWDKVGGHDRLG 347
               +   V D D +   D +G
Sbjct: 59  GFHTVSFYVLDEDTLSRDDVIG 80

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           L V V+ A  L+  D     + +VK  L  + L  +    + +N NP WNE    V  EP
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVL--RTRPSQTRNGNPSWNEELMFVAAEP 59

Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
               L L V D       + LG  ++PL  +  
Sbjct: 60  FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIER 92

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 286 DPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENF---KLVVKEPESQILQLQVFDWDKV 340
           DPYVK  L  +  K   +KT V +K  NP +NE      L V++ + ++LQ+ V+  D +
Sbjct: 34  DPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93

Query: 341 GGHDRLGMQLVPLK--LLTPHETKEFTL 366
             ++ LG   +PLK   L+    K + L
Sbjct: 94  VENEFLGGVCIPLKKLDLSQETEKWYPL 121

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENF 318
           L V ++    L   D   GTSDPYVKL L  EK    KT V +K  NP ++E F
Sbjct: 18  LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETF 71

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 254 ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPE 313
           +S      P+G + V V +A+ L  +   G SDPY  + +        +T      LNP 
Sbjct: 701 SSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVK--YRTIYGSSTLNPI 758

Query: 314 WNENFKLVVKEPESQILQLQVFDWDKVG 341
           WNE   + V    +Q L L+  D+++ G
Sbjct: 759 WNEILYVPVTSK-NQRLTLECMDYEESG 785

Length = 1227

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 456 KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
              K++TK I+KT +P WNE F F L       ++ IEV
Sbjct: 48  NETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEV 86

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 456 KGDKKRTKMIRKTRDPAWNEEFQF 479
           K  K RTK + KTR+P +NE   +
Sbjct: 50  KATKLRTKTVHKTRNPEFNETLTY 73

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 459 KKRTKMIRKTRDPAWNEEFQFMLD 482
           KKRTK I+ + +P WNE F+F + 
Sbjct: 36  KKRTKTIKNSINPVWNETFEFRIQ 59

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 432 SVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL---HE 488
            V V  A  + G N  +P   +   G KK T + + T  P +NE F F   E P     +
Sbjct: 7   RVRVIEARQLVGGN-IDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDK 65

Query: 489 KIHIEVMSKRT 499
            I I V   R+
Sbjct: 66  IIKISVYDSRS 76

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           L+V+VV+A  L       ++DP V++ L   K   K      +  NPEWN+ F       
Sbjct: 2   LYVRVVKARGLP----ANSNDPVVEVKLGNYKGSTKAIE---RTSNPEWNQVFAFSKDRL 54

Query: 326 ESQILQLQVFDWDKVGGHD 344
           +   L++ V  WDK    D
Sbjct: 55  QGSTLEVSV--WDKDKAKD 71

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 15/129 (11%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV--K 323
           L ++++ A  L  K   GT DPY  +SL   ++   +T   +K LNP W E F       
Sbjct: 2   LRLRILEAKNLPSK---GTRDPYCTVSLDQVEV--ARTKTVEK-LNPFWGEEFVFDDPPP 55

Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
           +     L     D         +G   V L  L   + K+    L          D + +
Sbjct: 56  DVTFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPLTPVDP-----DSEVQ 108

Query: 384 GKIVVELTY 392
           G + +   Y
Sbjct: 109 GSVRLRARY 117

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	548
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.97
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.89
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.87
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.84
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.84
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.83
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.83
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.83
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.83
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.82
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.82
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.82
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.82
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.81
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.81
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.8
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.8
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.8
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.8
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.8
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.8
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.8
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.8
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.8
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.8
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.8
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.79
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.79
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.79
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.78
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.78
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.78
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.78
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.77
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.77
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.77
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.77
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.77
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.77
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.77
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.77
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.77
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.77
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.77
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.76
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.76
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.76
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.76
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.76
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.76
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.76
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.75
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.75
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.75
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.75
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.75
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.75
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.75
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.75
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.75
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.75
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.74
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.74
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.74
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.74
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.74
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.74
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.74
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.73
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.73
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.73
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.73
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.73
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.73
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.73
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.73
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.73
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.73
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.72
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.72
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.72
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.72
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.71
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.71
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.71
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.71
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.71
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.71
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.71
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.71
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.71
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.71
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.7
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.7
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.7
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.7
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.7
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.7
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.7
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.69
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.69
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.69
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.69
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.69
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.69
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.69
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.69
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.69
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.69
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.69
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.69
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.68
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.68
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.68
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.68
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.68
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.68
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.68
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.68
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.67
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.67
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.67
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.67
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.67
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.67
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.67
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.67
PLN03008	868	Phospholipase D delta	99.66
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.66
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.66
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.66
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.66
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.66
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.66
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.65
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.65
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.65
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.65
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.65
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.65
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.65
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.65
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.65
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.64
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.64
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.64
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.64
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.64
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.64
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.64
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.64
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.64
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.63
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.63
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.63
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.63
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.62
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.62
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.62
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.62
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.62
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.61
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.61
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.61
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.61
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.6
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.59
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.59
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.59
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.58
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.58
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.58
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.58
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.58
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.58
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.57
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.56
PLN03008	868	Phospholipase D delta	99.55
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.54
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.54
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.54
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.53
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.53
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.53
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.52
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.51
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.51
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.49
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.48
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.44
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.43
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.43
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.42
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.38
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.38
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.36
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.32
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.31
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.27
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.25
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.24
PLN02270	808	phospholipase D alpha	99.19
PLN02223	537	phosphoinositide phospholipase C	99.15
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.15
PLN02270	808	phospholipase D alpha	99.13
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.13
PF10296	91	DUF2404: Putative integral membrane protein conser	99.1
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.08
PLN02952	599	phosphoinositide phospholipase C	99.06
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.05
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.99
PLN02223	537	phosphoinositide phospholipase C	98.94
PLN02230	598	phosphoinositide phospholipase C 4	98.94
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.92
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.91
PLN02222	581	phosphoinositide phospholipase C 2	98.88
PLN02228	567	Phosphoinositide phospholipase C	98.88
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.84
PLN02952	599	phosphoinositide phospholipase C	98.83
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.75
PLN02222	581	phosphoinositide phospholipase C 2	98.71
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.7
PLN02230	598	phosphoinositide phospholipase C 4	98.7
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.69
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.64
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.64
PLN02352	758	phospholipase D epsilon	98.62
PLN02352	758	phospholipase D epsilon	98.6
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.58
PLN02228	567	Phosphoinositide phospholipase C	98.55
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.54
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.48
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.42
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.35
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.27
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.15
PLN02964	644	phosphatidylserine decarboxylase	97.83
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.76
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.7
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.67
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.66
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.55
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.52
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.34
PLN02964	644	phosphatidylserine decarboxylase	97.27
KOG3532	1051	consensus Predicted protein kinase [General functi	97.25
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.12
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.79
PF15627	156	CEP76-C2: CEP76 C2 domain	96.75
KOG3837	523	consensus Uncharacterized conserved protein, conta	96.73
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.45
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.13
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.08
PF15627	156	CEP76-C2: CEP76 C2 domain	95.97
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.77
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.69
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.66
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.37
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.31
KOG1452	442	consensus Predicted Rho GTPase-activating protein	95.07
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	94.91
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	94.58
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	94.3
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	94.19
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	93.25
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	93.15
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	93.0
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	92.83
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	92.72
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	92.49
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	91.84
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	91.57
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	90.1
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	89.96
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	89.59
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	88.69
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	88.49
KOG1452	442	consensus Predicted Rho GTPase-activating protein	86.58
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	86.07
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	84.05
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	81.38
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	80.05

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=4.4e-66  Score=553.97  Aligned_cols=494  Identities=27%  Similarity=0.494  Sum_probs=409.1

Q ss_pred             cchhhhhhcccccccchhhHHHHHheeeeeee----cCCcccccccccccccCCchhHhhhCCCCCCceeCCCCcchHHH
Q 008950            2 GFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSK----PNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWL   77 (548)
Q Consensus         2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~d~E~~~Wl   77 (548)
                      |++||++|++||+++-+++.++   .+.++|+    +.+|..|+...+.+.+      +++         -.|+|++|||
T Consensus       165 ~v~Swifg~~~fs~~slffii~---~~~~vY~~~~~rv~rnird~v~~~~~~------ek~---------~nd~ESveWL  226 (1227)
T COG5038         165 SVASWIFGYLGFSFASLFFIIL---VTMYVYRTCIKRVRRNIRDLVQQELSE------EKL---------ENDYESVEWL  226 (1227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhh---------hcchhHHHHH
Confidence            6799999999999555443333   3444454    2333334444443322      223         2699999999


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHhhHhhccCcceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEeeeeeEeC---
Q 008950           78 NRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG---  153 (548)
Q Consensus        78 N~~l~~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~l~~~~~~~~~lG~~~P~i~~v~~~~~-~~~~~~ld~~~~~~~---  153 (548)
                      |.+|+++||.+++.+++.|.+++++.|+++.|+| |+.+.+++||||++||||.+||.|+. ..+.+.||+++++..   
T Consensus       227 NtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~  305 (1227)
T COG5038         227 NTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDI  305 (1227)
T ss_pred             HHHHHhheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccch
Confidence            9999999999999999999999999999999999 99999999999999999999999986 567899999999963   


Q ss_pred             ------------CCcEEEEEEE---ee-eEEEEEEEEEEEEEEEEEEEecCCCCCCceeEEEEEcCCCceEEEEEEEcc-
Q 008950          154 ------------NPNIVLVLKL---LS-FRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG-  216 (548)
Q Consensus       154 ------------~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~f~~~P~id~~~~~~g-  216 (548)
                                  |++|.|.++.   ++ +++||.|+|+.|.|++||+++ |++.+|++..|.++|++.|.+||.++|+| 
T Consensus       306 sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~  384 (1227)
T COG5038         306 SDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGG  384 (1227)
T ss_pred             hhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCC
Confidence                        4568888865   44 789999999999999999999 99999999999999999999999999987 


Q ss_pred             ----ccccccchhHHHHHHHHHHHhhhcccCCceeeeeccccccccccCCceEEEEEEEEecCccccC--CCCCCCcEEE
Q 008950          217 ----GDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKD--FLGTSDPYVK  290 (548)
Q Consensus       217 ----~~~~~~P~l~~~i~~~i~~~~~~~~v~P~~~~~~l~~~~~~~~~~~~g~L~V~V~~A~~L~~~d--~~g~~dpyv~  290 (548)
                          .|||++|||++||+++|..++++|+++|+.+++++.+...++...+.|+|.|+|.+|++|+..+  ..+..|||++
T Consensus       385 ~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit  464 (1227)
T COG5038         385 DFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYIT  464 (1227)
T ss_pred             CccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEE
Confidence                4899999999999999999999999999999999987766558889999999999999999988  6799999999


Q ss_pred             EEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEE-EEecc
Q 008950          291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEF-TLDLL  369 (548)
Q Consensus       291 v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~-~l~l~  369 (548)
                      +...+...  .||++++++.||+|||+|+..+.. .++.|.++|||.+...+|+.+|+..++|..|...+.+.. ..++.
T Consensus       465 ~~~~~r~~--gkT~v~~nt~nPvwNEt~Yi~lns-~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~  541 (1227)
T COG5038         465 VTFSDRVI--GKTRVKKNTLNPVWNETFYILLNS-FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL  541 (1227)
T ss_pred             EEeccccC--CccceeeccCCccccceEEEEecc-cCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee
Confidence            99765443  599999999999999999999975 568999999999989999999999999999987754432 22332


Q ss_pred             ccccCCCCCCCccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCCC--CC
Q 008950          370 KHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGEN--HN  447 (548)
Q Consensus       370 ~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~--~~  447 (548)
                              .+.+..|+|+.+++|+|..++....+...         +     +......|++.++++++++|....  ..
T Consensus       542 --------~~~k~vGrL~yDl~ffp~~e~k~~~~~s~---------e-----~~ed~n~GI~k~tl~~~~~l~~~~~~~~  599 (1227)
T COG5038         542 --------RNTKNVGRLTYDLRFFPVIEDKKELKGSV---------E-----PLEDSNTGILKVTLREVKALDELSSKKD  599 (1227)
T ss_pred             --------ccCccceEEEEeeeeecccCCcccccccc---------C-----CcccCCcceeEEEeeccccccCcccccc
Confidence                    24678999999999999977644332211         0     111224699999999999997632  33


Q ss_pred             CcEEEEEEcCeEE-EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccc-ee
Q 008950          448 NPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNG-RI  525 (548)
Q Consensus       448 dpyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~  525 (548)
                      ..+++++...+.. .|+.++.+.+|.||+.++-.+.+. ....+.+.+.|...      .+.+|+...+|.+++... .-
T Consensus       600 ~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~------g~~i~~~~~~l~~li~~t~dt  672 (1227)
T COG5038         600 NKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQS------GKVIATEGSTLPDLIDRTLDT  672 (1227)
T ss_pred             ceeEEEEecceEEeccceeeeccCCceeeecceEeccC-cceeEEEEeccccc------CceeccccccchHhhhccccc
Confidence            3448888888765 668899999999999999999886 45578888888642      378999999999998764 34


Q ss_pred             ceEEEeCCCCCeEEEEEEEEEeC
Q 008950          526 NEKYHLINSKRGVIHVDIRWKMI  548 (548)
Q Consensus       526 ~~w~~L~~~~~G~i~l~~~~~~~  548 (548)
                      ..||++. +++|+|.++.-|+||
T Consensus       673 ~~~f~~~-~~kg~I~~t~~W~Pi  694 (1227)
T COG5038         673 FLVFPLR-NPKGRIFITNYWKPI  694 (1227)
T ss_pred             eEEEEcC-CCcceEEEEecccee
Confidence            5899998 679999999999996

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.8e-31  Score=271.06  Aligned_cols=242  Identities=31%  Similarity=0.465  Sum_probs=200.7

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF  335 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~  335 (548)
                      .++.....|.|+|++|++|+..|..|.+||||++++.+.+..+.+|++.++|+||+|||+|.|.+..  .....|.+.||
T Consensus       161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~  240 (421)
T KOG1028|consen  161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY  240 (421)
T ss_pred             EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence            4667789999999999999999977889999999999988777899999999999999999999753  34789999999


Q ss_pred             EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecccCcccccccccccccCCCC
Q 008950          336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSG  415 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~  415 (548)
                      |+|++++|++||++.++|..+.......+|.++.......    ....|+|.++++|.|.                    
T Consensus       241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p~--------------------  296 (421)
T KOG1028|consen  241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLPT--------------------  296 (421)
T ss_pred             ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeecC--------------------
Confidence            9999999999999999999998887778888886543221    2222899999999985                    


Q ss_pred             CCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCC
Q 008950          416 NDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH  487 (548)
Q Consensus       416 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~  487 (548)
                                  .|.|+|.|.+|+||..   .+.+||||++++..     +++||.+.+++.||+|||+|.|.++.....
T Consensus       297 ------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~  364 (421)
T KOG1028|consen  297 ------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA  364 (421)
T ss_pred             ------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence                        6899999999999986   35789999999843     345999999999999999999988764333


Q ss_pred             C-eEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEE
Q 008950          488 E-KIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIH  540 (548)
Q Consensus       488 ~-~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~  540 (548)
                      + .+.|+|||++.   ++.+++||++.+....  .+....+|..+.++++-.+.
T Consensus       365 ~~~l~l~V~d~d~---~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv~  413 (421)
T KOG1028|consen  365 EVSLELTVWDHDT---LGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPVA  413 (421)
T ss_pred             eeEEEEEEEEccc---ccccceeeEEEecCCC--CchHHHHHHHHHhCccCcee
Confidence            3 78999999985   7888899999998875  23334567666666544444

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.89  E-value=1.6e-22  Score=208.25  Aligned_cols=242  Identities=21%  Similarity=0.267  Sum_probs=191.7

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH  343 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d  343 (548)
                      ..|.|+|.+|+||++.+..|.+||||.|.++.+.+  .||.++.+++.|.|.|.|+|.+.. .-+.|.|-|||+| +++|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~~D   80 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LKRD   80 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cccc
Confidence            46899999999999999999999999999998775  689999999999999999999965 4578999999999 9999


Q ss_pred             CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCccc
Q 008950          344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEE  423 (548)
Q Consensus       344 d~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (548)
                      +.||.+.+.-.+|......+.|+.|.. .++    +....|+|++++.+.+...+.                        
T Consensus        81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~~------------------------  131 (800)
T KOG2059|consen   81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQSS------------------------  131 (800)
T ss_pred             cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCCC------------------------
Confidence            999999999999987777777877743 233    467899999999998754221                        


Q ss_pred             ccCCceEEEEEEeeeecC-CC-CCCCCcEEEEEEcCeE----EEeeeccCCCCCccCceEEEEccCC-----------CC
Q 008950          424 ALSGAGLLSVLVQGAEDV-EG-ENHNNPYAIILYKGDK----KRTKMIRKTRDPAWNEEFQFMLDEP-----------PL  486 (548)
Q Consensus       424 ~~~~~g~L~V~v~~a~~L-~~-~~~~dpyv~v~l~~~~----~kT~v~~~t~nP~wne~f~f~v~~~-----------~~  486 (548)
                       ...++.     ..++++ |. ++.+|||+++...+..    ++|+++++|.+|.|+|.|.|.+...           +.
T Consensus       132 -~~~c~~-----L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~  205 (800)
T KOG2059|consen  132 -GLVCHV-----LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEE  205 (800)
T ss_pred             -cchhhh-----hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCccc
Confidence             011222     233333 33 4579999999987654    4999999999999999999998754           11


Q ss_pred             ---CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC----------CeEEEEEEEEE
Q 008950          487 ---HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK----------RGVIHVDIRWK  546 (548)
Q Consensus       487 ---~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~----------~G~i~l~~~~~  546 (548)
                         .-.|.+++|++...  ..++.++|++.+++...........||.|...+          -|.+++.+.++
T Consensus       206 e~~~l~irv~lW~~~~~--~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~  276 (800)
T KOG2059|consen  206 EDDMLEIRVDLWNDLNL--VINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT  276 (800)
T ss_pred             CCceeeEEEeeccchhh--hhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence               12688889986542  456999999999999988666668999996432          47777777654

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.87  E-value=2.2e-21  Score=166.09  Aligned_cols=119  Identities=21%  Similarity=0.334  Sum_probs=101.6

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecC-CCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVG  341 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~  341 (548)
                      .|.|.|+|++|++++..+ .|++||||++.+++++   .+|+++.+ +.||+|||+|.|.+.+ ....|.|+|||+|.++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~---~kT~v~~~~~~nP~WNe~F~f~v~~-~~~~l~~~V~d~d~~~   75 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAV---YETPTAYNGAKNPRWNKTIQCTLPE-GVDSIYIEIFDERAFT   75 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEE---EEeEEccCCCCCCccCeEEEEEecC-CCcEEEEEEEeCCCCc
Confidence            489999999999998877 7999999999999865   48988765 8999999999999975 3468999999999999


Q ss_pred             CCCeeEEEEEECc-ccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          342 GHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       342 ~dd~lG~~~i~l~-~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      +|++||++.+++. .+..++....|++|...      ......|+|+|+++|
T Consensus        76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y  121 (121)
T cd04016          76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY  121 (121)
T ss_pred             CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence            9999999999996 57777777888888531      123577999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.84  E-value=2.4e-20  Score=162.55  Aligned_cols=119  Identities=33%  Similarity=0.443  Sum_probs=100.8

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec-----CCCCEEEEEEEEcCCC
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-----PESQILQLQVFDWDKV  340 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-----~~~~~L~v~v~d~d~~  340 (548)
                      ++|+|++|+||+.++..|.+||||++++++.+   ++|++++++.||+|||+|.|.+..     +....|.++|||++.+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~   77 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL   77 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence            57999999999999988999999999998654   589999999999999999999976     3567899999999998


Q ss_pred             CCCCeeEEEEEECcccC--CCCceEEEEeccccccCCCCCCCccccEEEEEEE
Q 008950          341 GGHDRLGMQLVPLKLLT--PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT  391 (548)
Q Consensus       341 ~~dd~lG~~~i~l~~l~--~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~  391 (548)
                      ++|++||++.++++++.  .+.....|++|....    ....+.+|+|+++++
T Consensus        78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~~  126 (126)
T cd08682          78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDIQ  126 (126)
T ss_pred             CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEeC
Confidence            89999999999999987  555667888875321    123467899999873

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=6.8e-20  Score=158.55  Aligned_cols=121  Identities=33%  Similarity=0.503  Sum_probs=106.3

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD  344 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd  344 (548)
                      .|+|+|++|++|+..|..|.+||||++++++..  .++|++++++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~   77 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD   77 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence            378999999999999989999999999998643  36899999999999999999998764 578999999999998999


Q ss_pred             eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       345 ~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      +||++.++++++..+...+.|++|...      .+.+..|+|++.++|.|
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP  121 (121)
T ss_pred             ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence            999999999999998888999998532      12467899999999876

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.83  E-value=1.1e-19  Score=155.95  Aligned_cols=115  Identities=34%  Similarity=0.513  Sum_probs=103.4

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD  344 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd  344 (548)
                      +++|+|++|++|+..+..|.+||||++++++..   ++|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~   77 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE   77 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            478999999999999988999999999998654   68999999999999999999998766789999999999988999


Q ss_pred             eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       345 ~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                      +||++.++++++..+.....|++|.           ...|+|++.++|.
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~  115 (116)
T cd08376          78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT  115 (116)
T ss_pred             eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence            9999999999999988889999883           2369999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.83  E-value=5.6e-20  Score=158.37  Aligned_cols=117  Identities=32%  Similarity=0.444  Sum_probs=100.3

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeec-CCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG  342 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~  342 (548)
                      |.|+|+|++|++|+..+..+.+||||++++++..   ++|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+ 
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-   76 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-   76 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence            7899999999999999989999999999998744   5788764 5899999999999998766788999999998766 


Q ss_pred             CCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       343 dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      |++||++.++++++..+.....|++|..        +++..|+|+++++|
T Consensus        77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f  118 (118)
T cd08681          77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF  118 (118)
T ss_pred             CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence            8999999999999877666667777643        24678999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.83  E-value=4.7e-20  Score=155.24  Aligned_cols=106  Identities=21%  Similarity=0.234  Sum_probs=89.2

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC-cccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF  335 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~  335 (548)
                      +....|.|+|+|++|++|+ .  .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+..  .....|.|+||
T Consensus         9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~   85 (118)
T cd08677           9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR   85 (118)
T ss_pred             EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence            4556799999999999999 3  46799999999975 34456799999999999999999999864  34678999999


Q ss_pred             EcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 008950          336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD  367 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~  367 (548)
                      |+|+++++++||++.++++++..+...++|.+
T Consensus        86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~  117 (118)
T cd08677          86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVD  117 (118)
T ss_pred             eCCCCCCCceEEEEEEccccccCCccccchhc
Confidence            99999999999999999998865555555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.83  E-value=1.5e-19  Score=159.07  Aligned_cols=121  Identities=30%  Similarity=0.438  Sum_probs=103.3

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcC
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD  338 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d  338 (548)
                      .....|.|+|+|++|++|+..|..|.+||||+++++...   ++|++++++.||.|||+|.|.+.++..+.|.|+|||++
T Consensus        10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d   86 (136)
T cd08375          10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD   86 (136)
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence            456779999999999999999989999999999998654   69999999999999999999998777789999999999


Q ss_pred             CCCCCCeeEEEEEECcccCCCC-----ceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          339 KVGGHDRLGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       339 ~~~~dd~lG~~~i~l~~l~~~~-----~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      ..++|++||++.+++.++....     ....++.+          .....|+|++++.+
T Consensus        87 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~  135 (136)
T cd08375          87 FFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence            9999999999999999998621     12233332          25678999999976

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.82  E-value=1.6e-19  Score=154.68  Aligned_cols=112  Identities=26%  Similarity=0.422  Sum_probs=97.4

Q ss_pred             eEEEEEEeeeecCCCC--CCCCcEEEEEEcCeEEEeeeccC-CCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC
Q 008950          429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS  505 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~--~~~dpyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~  505 (548)
                      |.|+|+|++|++++..  +.+||||++.+++++++|+++++ +.||+|||+|.|.+.+.  .+.|.|+|+|++.   ++.
T Consensus         2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~---~~~   76 (121)
T cd04016           2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA---FTM   76 (121)
T ss_pred             cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC---CcC
Confidence            7899999999988653  68999999999999999999876 89999999999999763  3579999999985   678


Q ss_pred             CcceEEEEEech-hhhccceeceEEEeCC----CCCeEEEEEEEE
Q 008950          506 KESLGHVEINLT-DVVHNGRINEKYHLIN----SKRGVIHVDIRW  545 (548)
Q Consensus       506 d~~lG~~~i~L~-~l~~~~~~~~w~~L~~----~~~G~i~l~~~~  545 (548)
                      |++||++.+++. .+..+...+.||+|.+    ...|+|+|++.|
T Consensus        77 dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          77 DERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             CceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            999999999996 4666666899999987    347999999975

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.82  E-value=1.6e-19  Score=155.75  Aligned_cols=116  Identities=34%  Similarity=0.478  Sum_probs=101.7

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR  345 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~  345 (548)
                      |+|+|++|++|+..+..+.+||||++++++.....++|++++++.||+|||+|.|.+.....+.|.|+|||+|.. +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999998889999999999975433457999999999999999999999765567899999999988 8999


Q ss_pred             eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       346 lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      ||++.++++++..+.....|+++.          .+.+|+|++++.+
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~  117 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL  117 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence            999999999999998888999883          2457999888864

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=1.4e-19  Score=156.00  Aligned_cols=116  Identities=27%  Similarity=0.391  Sum_probs=99.0

Q ss_pred             EEEEEEEEecC---ccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC
Q 008950          265 ILHVKVVRASK---LLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG  341 (548)
Q Consensus       265 ~L~V~V~~A~~---L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~  341 (548)
                      .|+|+|++|+|   |+.+|..|.+||||++++++++   .||++++++.||+|||+|.|.+.++. ..|.|+|||++..+
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~---~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~   76 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKW---VRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH   76 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEE---eEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence            48999999999   8889999999999999998775   48999999999999999999997754 58999999999863


Q ss_pred             ------CCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEE
Q 008950          342 ------GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV  388 (548)
Q Consensus       342 ------~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l  388 (548)
                            +|++||++.++++++..+.....|++|... +   +...+..|+|++
T Consensus        77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~  125 (126)
T cd08379          77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC  125 (126)
T ss_pred             ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence                  899999999999999998888888888532 1   123556788775

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=1.7e-19  Score=154.03  Aligned_cols=106  Identities=27%  Similarity=0.385  Sum_probs=91.4

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcC----cccceeeeeeecCCCCCeeeceEEEEEec---CCCCEEEEEEEEc
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVFDW  337 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~----~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d~  337 (548)
                      .|+|+|++|++|+..+ .|.+||||++++.+    .+.++++|+++++|+||+|||+|.|.+..   +....|.|+|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999999988 49999999999842    33334689999999999999999999974   2346799999999


Q ss_pred             CCCCCCCeeEEEEEECcccCCCCceEEEEecccc
Q 008950          338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH  371 (548)
Q Consensus       338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~  371 (548)
                      |..++|++||++.++++++..++....|++|.+.
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            9888899999999999999999888899998554

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.81  E-value=6.4e-18  Score=183.85  Aligned_cols=318  Identities=21%  Similarity=0.341  Sum_probs=226.1

Q ss_pred             cchhHHHHHHHHHHHhhhcccCCce-------eee---eccc----cccccccCCceEEEEEEEEecCccccCCCCCCCc
Q 008950          222 IPGLYQFIQKCITKYVAGIYIWPQT-------YEI---PILD----ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDP  287 (548)
Q Consensus       222 ~P~l~~~i~~~i~~~~~~~~v~P~~-------~~~---~l~~----~~~~~~~~~~g~L~V~V~~A~~L~~~d~~g~~dp  287 (548)
                      ++...+-+.+.|.......++.|.+       ++.   |+.-    .+......+.|.++|+|..|.+|......+++||
T Consensus       655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP  734 (1227)
T COG5038         655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP  734 (1227)
T ss_pred             eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence            4556666678888888888888876       222   4431    2222478899999999999999998888899999


Q ss_pred             EEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce---EE
Q 008950          288 YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK---EF  364 (548)
Q Consensus       288 yv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~---~~  364 (548)
                      |+++.+++..  ++||-....++||.|||..+..+..+ .+.+.++++|++..+.|..+|++.++++++......   ..
T Consensus       735 ya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~  811 (1227)
T COG5038         735 YATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME  811 (1227)
T ss_pred             ceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence            9999999743  47888889999999999999999774 567999999999999999999999999998763211   11


Q ss_pred             EEeccccccCCCCCCCccccEEEEEEEEEecccCccc------------------------c------ccc---------
Q 008950          365 TLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIK------------------------F------SSV---------  405 (548)
Q Consensus       365 ~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~------------------------~------~~~---------  405 (548)
                      +..-.....+....+...+|++.+.+.|+|..-.-..                        +      |.+         
T Consensus       812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v  891 (1227)
T COG5038         812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV  891 (1227)
T ss_pred             eecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence            2111111111111135678999999999986421000                        0      000         


Q ss_pred             ----c------------------------------------------c-cc----ccC----------------------
Q 008950          406 ----S------------------------------------------K-KY----SRK----------------------  412 (548)
Q Consensus       406 ----~------------------------------------------~-~~----~~~----------------------  412 (548)
                          +                                          + .+    +..                      
T Consensus       892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s  971 (1227)
T COG5038         892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS  971 (1227)
T ss_pred             ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence                0                                          0 00    000                      


Q ss_pred             -------CC---CCC------------------------CC-----------Ccc-------cccCCceEEEEEEeeeec
Q 008950          413 -------GS---GND------------------------QS-----------SDE-------EALSGAGLLSVLVQGAED  440 (548)
Q Consensus       413 -------~~---~~~------------------------~~-----------~~~-------~~~~~~g~L~V~v~~a~~  440 (548)
                             ..   ..+                        ..           .|.       ..-..+|.|.+.+.+|.|
T Consensus       972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038         972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred             eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence                   00   000                        00           000       001246779999999999


Q ss_pred             CCC---CCCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEec
Q 008950          441 VEG---ENHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINL  516 (548)
Q Consensus       441 L~~---~~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L  516 (548)
                      |+.   ++.+||||++.++++ .++|+++++|+||+|||.|...+... ..+.+.+.|+|++.   ...++.||.+.++|
T Consensus      1052 l~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~---~~knd~lg~~~idL 1127 (1227)
T COG5038        1052 LPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDS---GEKNDLLGTAEIDL 1127 (1227)
T ss_pred             CcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeeccc---CCCccccccccccH
Confidence            987   356999999999998 57999999999999999999999875 56789999999986   46789999999999


Q ss_pred             hhhhccceeceEEEeCCCC----CeEEEEEEEEE
Q 008950          517 TDVVHNGRINEKYHLINSK----RGVIHVDIRWK  546 (548)
Q Consensus       517 ~~l~~~~~~~~w~~L~~~~----~G~i~l~~~~~  546 (548)
                      ..+..+...+...+|.+..    .|.++....++
T Consensus      1128 ~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r 1161 (1227)
T COG5038        1128 SKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFR 1161 (1227)
T ss_pred             hhcCcCCccceeeeccCcceEecccEeecceecc
Confidence            9998877666666666543    56666555554

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.81  E-value=1.1e-19  Score=158.66  Aligned_cols=100  Identities=45%  Similarity=0.746  Sum_probs=92.3

Q ss_pred             CCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC
Q 008950          261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV  340 (548)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~  340 (548)
                      ...|.|+|+|++|.||..+|..++|||||++.+++++.   +|+++++++||+|||.|.|.+.++ ...|++.|||+|.+
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f   78 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF   78 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence            46799999999999999999989999999999999884   899999999999999999999986 56899999999999


Q ss_pred             CCCCeeEEEEEECcccCCCCceEE
Q 008950          341 GGHDRLGMQLVPLKLLTPHETKEF  364 (548)
Q Consensus       341 ~~dd~lG~~~i~l~~l~~~~~~~~  364 (548)
                      ++||+||.++|++..+.......+
T Consensus        79 s~dD~mG~A~I~l~p~~~~~~~~~  102 (168)
T KOG1030|consen   79 SSDDFMGEATIPLKPLLEAQKMDY  102 (168)
T ss_pred             CcccccceeeeccHHHHHHhhhhc
Confidence            999999999999999987765554

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.80  E-value=5.7e-19  Score=155.79  Aligned_cols=110  Identities=27%  Similarity=0.381  Sum_probs=95.3

Q ss_pred             ceEEEEEEEEecCccccC-CCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEE-EcC
Q 008950          263 VGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DWD  338 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d~d  338 (548)
                      .|.|.|+|++|+||+..+ ..|.+||||++++.+..  ..++||+++++|+||+|||+|.|.+. ..+..|.++|| |++
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~  106 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG  106 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence            589999999999999864 56889999999996543  34679999999999999999999997 57789999999 678


Q ss_pred             CCCCCCeeEEEEEECcccCCCCceEEEEecccccc
Q 008950          339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN  373 (548)
Q Consensus       339 ~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~  373 (548)
                      ..+++++||++.++|+++..+.....|++|.....
T Consensus       107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~  141 (146)
T cd04028         107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS  141 (146)
T ss_pred             CCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence            88899999999999999987777778888865443

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.80  E-value=3.4e-19  Score=150.01  Aligned_cols=113  Identities=19%  Similarity=0.222  Sum_probs=95.6

Q ss_pred             cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCCCCCCcEEEEEEcC----eE
Q 008950          384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG----DK  459 (548)
Q Consensus       384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~----~~  459 (548)
                      |+|++++.|.|.                                .+.|+|+|++|+||+..+.+||||++++..    .+
T Consensus         1 ~~l~fsL~Y~~~--------------------------------~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k   48 (118)
T cd08677           1 PKLHYSLSYDKQ--------------------------------KAELHVNILEAENISVDAGCECYISGCVSVSEGQKE   48 (118)
T ss_pred             CeEEEEEEEcCc--------------------------------CCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccE
Confidence            578999999975                                689999999999999767899999999964    45


Q ss_pred             EEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950          460 KRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL  531 (548)
Q Consensus       460 ~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L  531 (548)
                      ++|++.++|.||+|||+|.|.+..... ...|.++|||.+.   ++++++||++.++++++.......+|-.|
T Consensus        49 ~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr---fs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          49 AQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR---FSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             EEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC---CCCCceEEEEEEccccccCCccccchhcC
Confidence            699999999999999999999876433 3479999999985   88999999999999987555555677654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=5.4e-19  Score=154.23  Aligned_cols=120  Identities=33%  Similarity=0.476  Sum_probs=100.9

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC---CCEEEEEEEEcCCCC-
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---SQILQLQVFDWDKVG-  341 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~---~~~L~v~v~d~d~~~-  341 (548)
                      |+|+|++|++|+..+..|.+||||++++++++   ++|++++++.||.|||+|.|.+.++.   ...|.|+|||++..+ 
T Consensus         2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~   78 (127)
T cd04022           2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR   78 (127)
T ss_pred             eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence            79999999999999988999999999999765   58999999999999999999987543   368999999999876 


Q ss_pred             CCCeeEEEEEECcccC-CCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          342 GHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       342 ~dd~lG~~~i~l~~l~-~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                      +|++||++.++++++. .+.....|++|.+..     ..+..+|+|+|++.+.
T Consensus        79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~  126 (127)
T cd04022          79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence            8999999999999998 455666777775421     1245789999998764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.80  E-value=7.8e-19  Score=151.97  Aligned_cols=112  Identities=28%  Similarity=0.559  Sum_probs=101.0

Q ss_pred             eEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950          429 GLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~---------~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~  499 (548)
                      |+|.|+|.+|+||+..         +.+||||++++++..++|++++++.||.|||.|.|.+.+. ..+.|.++|||++.
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~   79 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP   79 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence            6799999999999853         3689999999999889999999999999999999999764 45789999999974


Q ss_pred             CccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEE
Q 008950          500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRW  545 (548)
Q Consensus       500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~  545 (548)
                         . .+++||++.++++++..++...+||+|.+..+|+|+|+++|
T Consensus        80 ---~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          80 ---D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             ---C-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence               4 78999999999999988777789999998889999999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=7.4e-19  Score=156.97  Aligned_cols=128  Identities=25%  Similarity=0.294  Sum_probs=104.7

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecC-CCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH  343 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d  343 (548)
                      .|+|+|++|++|+..|..|.+||||+++++++.   .+|+++.+ +.||+|||+|.|.+.++..+.+.|+|||++..++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d   77 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD   77 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence            489999999999999999999999999999754   58888866 69999999999999876667999999999988889


Q ss_pred             CeeEEEEEECcccCCC----CceEEEEeccccccC-CCCCCCccccEEEEEEEEEec
Q 008950          344 DRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNI-SDPKDMKQRGKIVVELTYVPF  395 (548)
Q Consensus       344 d~lG~~~i~l~~l~~~----~~~~~~l~l~~~~~~-~~~~~~~~~G~l~l~l~~~p~  395 (548)
                      ++||++.++++++..+    .....|++|...... .+.+..+..|+|+|++.|.+.
T Consensus        78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~  134 (150)
T cd04019          78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG  134 (150)
T ss_pred             CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence            9999999999998753    334678887543211 011234678999999999854

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.80  E-value=1.5e-18  Score=151.17  Aligned_cols=122  Identities=25%  Similarity=0.395  Sum_probs=103.0

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR  345 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~  345 (548)
                      |.|+|++|+||+.  ..|.+||||+++++.. ...++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~   76 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF   76 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence            5799999999988  6789999999999742 234699999999999999999999854 46789999999999989999


Q ss_pred             eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950          346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF  395 (548)
Q Consensus       346 lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  395 (548)
                      ||++.++++++..+.....|+++....    ..+....|+|++++.|.+.
T Consensus        77 lG~~~i~l~~l~~~~~~~~~~~L~~~~----~~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          77 LGLAIVPFDELRKNPSGRQIFPLQGRP----YEGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             EEEEEEeHHHhccCCceeEEEEecCCC----CCCCCcceEEEEEEEEecc
Confidence            999999999999887777788875321    1235679999999999865

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.80  E-value=1.1e-18  Score=150.57  Aligned_cols=119  Identities=22%  Similarity=0.271  Sum_probs=100.3

Q ss_pred             EEEEEEEecCccccC-CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950          266 LHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD  344 (548)
Q Consensus       266 L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd  344 (548)
                      |.|+|++|+||+..+ ..|.+||||+++++++.  .++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~   78 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS   78 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence            689999999999874 45789999999997553  36899999999999999999999753 478999999999999999


Q ss_pred             eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       345 ~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      +||++.++++++..+.....|++|.+..     ...+..|+|++++.|
T Consensus        79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~  121 (121)
T cd08401          79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL  121 (121)
T ss_pred             eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence            9999999999999877778888875431     123468999999864

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.80  E-value=9.1e-19  Score=151.96  Aligned_cols=122  Identities=30%  Similarity=0.490  Sum_probs=103.9

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD  344 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd  344 (548)
                      .|+|+|++|++|+..+..+.+||||++++++..   .+|++++++.||.|||+|.|.+.+.....|.|+|||++..++++
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~   77 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND   77 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            389999999999999988899999999998654   58999999999999999999998766678999999999999999


Q ss_pred             eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEE
Q 008950          345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL  390 (548)
Q Consensus       345 ~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l  390 (548)
                      +||++.++++++..+.....|+.+..... ......+..|.|++.+
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~-~~~~~~~~~G~l~~~~  122 (123)
T cd04025          78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPR-AEEESGGNLGSLRLKV  122 (123)
T ss_pred             EeEEEEEEHHHcccCCCCCCEEECCCCCC-CCccccCceEEEEEEe
Confidence            99999999999987766677887765432 2233567889999876

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.80  E-value=9.7e-19  Score=152.95  Aligned_cols=123  Identities=30%  Similarity=0.453  Sum_probs=103.0

Q ss_pred             eEEEEEEEEecCccccCC--CCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC
Q 008950          264 GILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG  341 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~  341 (548)
                      |+|+|+|++|++|+..+.  .+.+||||++++++..   ++|++++++.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~   77 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA   77 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence            789999999999999988  8899999999997654   58999999999999999999998766789999999999988


Q ss_pred             CCCeeEEEEEECcccCC---CCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          342 GHDRLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       342 ~dd~lG~~~i~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      ++++||++.+++.++..   ......|++|.....   ..+...+|+|+++++|
T Consensus        78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~---~~~~~~~G~i~l~~~~  128 (128)
T cd04024          78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP---GKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCcceEEEEEHHHhhcccccCccceeEEccCccc---CccccccceEEEEEEC
Confidence            99999999999999873   233456777643211   1235689999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.80  E-value=2.1e-18  Score=150.07  Aligned_cols=122  Identities=23%  Similarity=0.316  Sum_probs=101.6

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG  342 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~  342 (548)
                      ...|+|+|++|+||+..   +.+||||++++++..  ..+|+++ ++.||.|||+|.|.+..+....++|.|||++..++
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~   76 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK   76 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence            35799999999999875   478999999998643  2578874 68999999999998765544689999999999999


Q ss_pred             CCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       343 dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      |++||++.+++.++..+.....|+++.+..    .......|+|+++++|.+
T Consensus        77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence            999999999999999888778888885431    123567899999999986

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.80  E-value=4.5e-19  Score=153.16  Aligned_cols=105  Identities=31%  Similarity=0.369  Sum_probs=91.7

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEE-e--cCCCCEEEEEEEEc
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV-K--EPESQILQLQVFDW  337 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v-~--~~~~~~L~v~v~d~  337 (548)
                      .+.|.|+|++|+||+..+ .|.+||||++++.+..  ..+++|++++++.||.|||+|.|.+ .  +.....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            588999999999999999 8999999999997642  3457899999999999999999987 2  33467899999999


Q ss_pred             CCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      +..+++++||++.++|+++..++....|++|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999999987666667665

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.79  E-value=1.2e-18  Score=151.53  Aligned_cols=122  Identities=31%  Similarity=0.516  Sum_probs=101.3

Q ss_pred             ceEEEEEEEEecCccccC-CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC
Q 008950          263 VGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG  341 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~  341 (548)
                      .|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~   78 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR   78 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence            489999999999999765 4467999999999873 23379999999999999999999987 45789999999999988


Q ss_pred             CCCeeEEEEEECcccCCCCceE-EEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          342 GHDRLGMQLVPLKLLTPHETKE-FTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       342 ~dd~lG~~~i~l~~l~~~~~~~-~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      +|++||++.+++.++..+.... .+..+.        .+++..|+|+++++|.|
T Consensus        79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence            9999999999999999775543 233221        13567899999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.79  E-value=1.4e-18  Score=150.43  Aligned_cols=115  Identities=34%  Similarity=0.500  Sum_probs=100.5

Q ss_pred             eEEEEEEEEecCccccCC------CCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEc
Q 008950          264 GILHVKVVRASKLLKKDF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW  337 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~------~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~  337 (548)
                      |+|+|+|++|+||+..|.      .|.+||||++++++.   .++|++++++.||+|||+|.|.+.+...+.|.|+|||+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~   77 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE   77 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence            789999999999998874      368999999999874   36999999999999999999999876678999999999


Q ss_pred             CCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      +.. +|++||++.++++++..+.....|++|.          ....|+|+++++|
T Consensus        78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~  121 (121)
T cd08391          78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW  121 (121)
T ss_pred             CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence            987 8999999999999998877777888873          2367999998865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.79  E-value=4.3e-18  Score=148.17  Aligned_cols=123  Identities=25%  Similarity=0.364  Sum_probs=102.4

Q ss_pred             CceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC
Q 008950          262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG  341 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~  341 (548)
                      |.++|+|+|++|++|+..|..|.+||||++.++++.   .+|++++++.||+|||.|.|.+.+. ...|.|+|||++.. 
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~-   75 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL-   75 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence            468999999999999999988999999999998765   5899999999999999999988764 67899999999876 


Q ss_pred             CCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          342 GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       342 ~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      +|++||++.+++.++.....+++.+.  ...   ...+++..|+|.+++.+.+
T Consensus        76 ~d~~lG~~~~~l~~~~~~~~~~~~l~--~~~---~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          76 CDEFLGQATLSADPNDSQTLRTLPLR--KRG---RDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             CCCceEEEEEecccCCCcCceEEEcc--cCC---CCCCCCCCCEEEEEEEEcc
Confidence            58999999999998766555555543  211   1235778999999997765

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.78  E-value=2e-18  Score=150.49  Aligned_cols=111  Identities=30%  Similarity=0.424  Sum_probs=95.2

Q ss_pred             EEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCC----CCCCeEEEEEEEccCCccC
Q 008950          431 LSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEP----PLHEKIHIEVMSKRTGIRF  503 (548)
Q Consensus       431 L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~~l~v~V~d~~~~~~~  503 (548)
                      ++|+|++|+||+..   +.+||||++++++.+++|++++++.||+|||.|.|.+...    .....|.++|||++.   +
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~---~   77 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL---L   77 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc---c
Confidence            47999999999753   5799999999999999999999999999999999999772    234689999999974   6


Q ss_pred             CCCcceEEEEEechhhh--ccceeceEEEeCCC------CCeEEEEEEE
Q 008950          504 WSKESLGHVEINLTDVV--HNGRINEKYHLINS------KRGVIHVDIR  544 (548)
Q Consensus       504 ~~d~~lG~~~i~L~~l~--~~~~~~~w~~L~~~------~~G~i~l~~~  544 (548)
                      +.|++||++.++|+++.  .+....+||+|.+.      ..|+|+|+++
T Consensus        78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            78999999999999998  45567899999753      2699999875

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.78  E-value=1.3e-18  Score=151.16  Aligned_cols=110  Identities=34%  Similarity=0.407  Sum_probs=94.0

Q ss_pred             ccCCceEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~  333 (548)
                      +....+.|.|+|++|+||+..|.. |.+||||++++.+..  ..+++|++++++.||+|||+|.|.+..  .....|.|+
T Consensus        10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~   89 (125)
T cd08393          10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS   89 (125)
T ss_pred             EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence            344568999999999999999875 899999999997543  344689999999999999999999863  345689999


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      |||++..+++++||++.++|.++...+....|++|
T Consensus        90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  124 (125)
T cd08393          90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL  124 (125)
T ss_pred             EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence            99999999999999999999999877666667665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.78  E-value=2.7e-18  Score=147.83  Aligned_cols=112  Identities=22%  Similarity=0.487  Sum_probs=97.4

Q ss_pred             eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccC-CCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      |.|+|+|.+|++|+..   +.+||||++++++..++|+++.+ +.||+|||.|.|.+... ..+.|.++|||++.   .+
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~---~~   76 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK---RK   76 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC---CC
Confidence            6799999999999863   57999999999998899998765 78999999999999875 45689999999874   33


Q ss_pred             CCcceEEEEEechhhhccceeceEEEeCCCC--CeEEEEEEEE
Q 008950          505 SKESLGHVEINLTDVVHNGRINEKYHLINSK--RGVIHVDIRW  545 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~--~G~i~l~~~~  545 (548)
                       |++||++.++++++..+....+||+|.+.+  .|+|+|+++|
T Consensus        77 -~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          77 -PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             -CcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence             899999999999998876778999998653  7999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.78  E-value=2.3e-18  Score=149.41  Aligned_cols=110  Identities=31%  Similarity=0.421  Sum_probs=95.0

Q ss_pred             ccCCceEEEEEEEEecCccccCC-CCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~-~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~  333 (548)
                      +....|.|.|+|++|+||+..+. .|.+||||++++.+..  ..++||++++++.||+|||+|.|.+...  ....|.|+
T Consensus        10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~   89 (125)
T cd04029          10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS   89 (125)
T ss_pred             EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence            45667999999999999998875 4789999999997543  3457899999999999999999998642  35689999


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      |||++..+++++||++.+++.++...+....|++|
T Consensus        90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            99999999999999999999999988777778776

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.77  E-value=8.1e-18  Score=151.88  Aligned_cols=123  Identities=32%  Similarity=0.439  Sum_probs=103.0

Q ss_pred             ceEEEEEEEEecCccccC------------------------------CCCCCCcEEEEEEcCcccceeeeeeecCCCCC
Q 008950          263 VGILHVKVVRASKLLKKD------------------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP  312 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d------------------------------~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP  312 (548)
                      .|.|.|+|.+|++|+.+|                              ..|.+||||++++++.+.  .+|++++++.||
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP   83 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP   83 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence            599999999999999987                              246789999999987543  589999999999


Q ss_pred             eeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       313 ~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      +|||+|.|.+.+. .+.|.|+|||+|..+ +++||++.++++++..+.....|+++....    .+..+..|.|+++++|
T Consensus        84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----~~~~~~~~~l~v~~~f  157 (158)
T cd04015          84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN----GKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC----CCCCCCCCEEEEEEEE
Confidence            9999999998654 468999999999775 689999999999999888888899885421    1123457899999998


Q ss_pred             E
Q 008950          393 V  393 (548)
Q Consensus       393 ~  393 (548)
                      .
T Consensus       158 ~  158 (158)
T cd04015         158 T  158 (158)
T ss_pred             C
Confidence            4

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.77  E-value=1.1e-17  Score=145.63  Aligned_cols=115  Identities=23%  Similarity=0.369  Sum_probs=98.6

Q ss_pred             ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950          428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK  506 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d  506 (548)
                      ...|+|+|++|+||+..+.+||||++.+++.. .+|++ +++.||.|||.|.|.+..+ ..+.+.|.|+|++.   .+.|
T Consensus         3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~---~~~d   77 (126)
T cd08400           3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAK---RSKD   77 (126)
T ss_pred             eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCC---CCCC
Confidence            35699999999999988889999999998755 58887 4689999999999987654 33579999999875   6789


Q ss_pred             cceEEEEEechhhhccceeceEEEeCCCC------CeEEEEEEEEEe
Q 008950          507 ESLGHVEINLTDVVHNGRINEKYHLINSK------RGVIHVDIRWKM  547 (548)
Q Consensus       507 ~~lG~~~i~L~~l~~~~~~~~w~~L~~~~------~G~i~l~~~~~~  547 (548)
                      ++||++.++|+++..+...+.||+|.+..      .|+|+|+++|.+
T Consensus        78 ~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          78 SEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            99999999999998887788999997542      599999999975

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.77  E-value=2.8e-18  Score=149.16  Aligned_cols=111  Identities=31%  Similarity=0.562  Sum_probs=96.8

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF  335 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~  335 (548)
                      .+....|.|.|+|++|++|+..+..|.+||||++++.+.....++|++++++.||+|||+|.|.+...  ....|.++||
T Consensus        10 ~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~   89 (124)
T cd08387          10 EYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY   89 (124)
T ss_pred             EECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence            34556799999999999999999899999999999965433457999999999999999999998643  3568999999


Q ss_pred             EcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      |++.+++|++||++.++++++..++....|++|
T Consensus        90 d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08387          90 DFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI  122 (124)
T ss_pred             ECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence            999999999999999999999977777888876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=7.4e-18  Score=144.65  Aligned_cols=112  Identities=21%  Similarity=0.354  Sum_probs=100.1

Q ss_pred             EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950          430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK  506 (548)
Q Consensus       430 ~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d  506 (548)
                      +++|+|++|++|+..   +.+||||++++++..++|++++++.||.|||.|.|.+.+. ..+.|.++|||++.   .+.|
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~---~~~~   76 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT---GKKD   76 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC---CCCC
Confidence            478999999999863   5789999999999999999999999999999999999875 45789999999985   6789


Q ss_pred             cceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEE
Q 008950          507 ESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWK  546 (548)
Q Consensus       507 ~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~  546 (548)
                      ++||++.++|+++..+.....||+|.+. .|+|++.++|.
T Consensus        77 ~~iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          77 EFIGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             CeEEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence            9999999999999888878899999866 79999999875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.77  E-value=4.6e-18  Score=147.52  Aligned_cols=115  Identities=24%  Similarity=0.383  Sum_probs=98.3

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC----CCCCCcEEEEEEcC-
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG-  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~----~~~~dpyv~v~l~~-  457 (548)
                      +|+|++++.|.+.                                .+.|.|+|++|+||+.    .+.+||||++++.. 
T Consensus         1 ~G~i~~sl~y~~~--------------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~   48 (125)
T cd04029           1 SGEILFSLSYDYK--------------------------------TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD   48 (125)
T ss_pred             CcEEEEEEEEECC--------------------------------CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC
Confidence            5999999999863                                5789999999999975    25799999999952 


Q ss_pred             ----eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       458 ----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                          .++||++++++.||+|||+|.|.+..... ...|.++|||++.   .+.+++||++.++|.++..+.....||+|.
T Consensus        49 ~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~---~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          49 KSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR---FGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             CccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC---CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence                34699999999999999999999875322 3479999999874   678999999999999998888789999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=4.7e-18  Score=146.58  Aligned_cols=115  Identities=26%  Similarity=0.356  Sum_probs=96.0

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD  344 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd  344 (548)
                      .|.|+|++|+||+..    .+||||++++++..   .+|++++++.||+|||+|.|.+.++....|.++|||++.. +++
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~   72 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD   72 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence            489999999999887    78999999998643   6999999999999999999998776678999999999976 789


Q ss_pred             eeEEEEEECcccCCCC-----ceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          345 RLGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       345 ~lG~~~i~l~~l~~~~-----~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                      +||++.++++++....     ....|++|...      .+.+.+|+|++++.|-
T Consensus        73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~------~~~~~~G~i~l~~~~~  120 (121)
T cd08378          73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDK------KGGRVGGELMLAVWFG  120 (121)
T ss_pred             eeeeEEEEhHhCcCCCCCCCCCCcceEEccCC------CCCccceEEEEEEEec
Confidence            9999999999987532     23467776442      1246889999999873

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=8.3e-18  Score=145.07  Aligned_cols=118  Identities=35%  Similarity=0.536  Sum_probs=99.7

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH  343 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d  343 (548)
                      |.|.|+|++|++|+..+..+.+||||++++++..   .+|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~   76 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP   76 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence            7899999999999999988999999999998654   5899999999999999999998653 57899999999988899


Q ss_pred             CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       344 d~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      ++||++.+++.++..+..+  |+.|...     ....+..|+|.+++.+
T Consensus        77 ~~iG~~~~~l~~~~~~~~~--~~~l~~~-----~~~~~~~G~i~l~~~~  118 (119)
T cd08377          77 EFLGKVAIPLLSIKNGERK--WYALKDK-----KLRTRAKGSILLEMDV  118 (119)
T ss_pred             ceeeEEEEEHHHCCCCCce--EEECccc-----CCCCceeeEEEEEEEe
Confidence            9999999999999876554  4444321     1124579999999876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=7.3e-18  Score=147.39  Aligned_cols=113  Identities=27%  Similarity=0.498  Sum_probs=99.2

Q ss_pred             eEEEEEEeeeecCCC-----CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccC
Q 008950          429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRF  503 (548)
Q Consensus       429 g~L~V~v~~a~~L~~-----~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~  503 (548)
                      |.|+|+|++|++|+.     .+.+||||++.+++..++|++++++.||.|||.|.|.+... ..+.|.|+|||++.   .
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~---~   76 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR---F   76 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC---C
Confidence            689999999999974     35789999999999999999999999999999999999874 45789999999985   5


Q ss_pred             CCCcceEEEEEechhhhc---cceeceEEEeCCC-------CCeEEEEEEEE
Q 008950          504 WSKESLGHVEINLTDVVH---NGRINEKYHLINS-------KRGVIHVDIRW  545 (548)
Q Consensus       504 ~~d~~lG~~~i~L~~l~~---~~~~~~w~~L~~~-------~~G~i~l~~~~  545 (548)
                      +.+++||++.+++.++..   .+...+||+|.+.       .+|+|+|++.|
T Consensus        77 ~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          77 AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            688999999999999983   3446799999866       38999999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.77  E-value=2e-18  Score=146.81  Aligned_cols=95  Identities=37%  Similarity=0.574  Sum_probs=84.5

Q ss_pred             eEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC---CCCEEEEEEEEcCC
Q 008950          264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK  339 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~d~  339 (548)
                      |+|+|+|++|++|+..|.. |.+||||++++.+.....++|+++++++||+|||+|.|.+...   ..+.|.++|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            7899999999999999987 8999999999975443457999999999999999999988643   35689999999999


Q ss_pred             CCCCCeeEEEEEECcccCC
Q 008950          340 VGGHDRLGMQLVPLKLLTP  358 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~  358 (548)
                      .++|++||++.++++++..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~   99 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE   99 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc
Confidence            9999999999999999983

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.77  E-value=4.9e-18  Score=146.72  Aligned_cols=100  Identities=27%  Similarity=0.368  Sum_probs=85.4

Q ss_pred             eEEEEEEeeeecCCC--CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEc-cCC-CCCCeEEEEEEEccC
Q 008950          429 GLLSVLVQGAEDVEG--ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFML-DEP-PLHEKIHIEVMSKRT  499 (548)
Q Consensus       429 g~L~V~v~~a~~L~~--~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v-~~~-~~~~~l~v~V~d~~~  499 (548)
                      +.|.|+|++|+||+.  .+.+||||++++.+     .++||++++++.||+|||+|.|.+ ... .....|.++|||++.
T Consensus        13 ~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~   92 (122)
T cd08381          13 GTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS   92 (122)
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC
Confidence            679999999999976  45799999999963     457999999999999999999987 221 134589999999985


Q ss_pred             CccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950          500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHL  531 (548)
Q Consensus       500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L  531 (548)
                         ++++++||++.++|+++..++....||+|
T Consensus        93 ---~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          93 ---LVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             ---CcCCcEEEEEEEeccccccCCCccceEEC
Confidence               67899999999999999887777899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.77  E-value=7.1e-18  Score=148.51  Aligned_cols=123  Identities=35%  Similarity=0.520  Sum_probs=100.8

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcc----cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV  340 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~  340 (548)
                      .|+|+|++|++|+..|..|.+||||++++.+..    ...++|++++++.||.|||+|.|.+.. ....|.|+|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence            489999999999999988999999999997651    234689999999999999999999865 356899999999999


Q ss_pred             CCCCeeEEEEEECcccCCCCc------eEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          341 GGHDRLGMQLVPLKLLTPHET------KEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       341 ~~dd~lG~~~i~l~~l~~~~~------~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                      ++|++||++.+++.++..+..      ...|++|.+.     ...++..|+|++++.|.
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence            999999999999999886532      2355665432     11346799999999883

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.76  E-value=1.2e-17  Score=147.48  Aligned_cols=117  Identities=25%  Similarity=0.306  Sum_probs=98.1

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC----CCCCcEEEEEE
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILY  455 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l  455 (548)
                      ....|+|++++.|.                                  .+.|.|+|++|+||...    +.+||||++++
T Consensus        14 ~~~~G~l~lsl~y~----------------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~L   59 (146)
T cd04028          14 SPSMGDIQLGLYDK----------------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYL   59 (146)
T ss_pred             CCCcceEEEEEEeC----------------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEE
Confidence            45789999999883                                  36899999999999752    46899999999


Q ss_pred             cCe-----EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEE
Q 008950          456 KGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYH  530 (548)
Q Consensus       456 ~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~  530 (548)
                      ...     ++||++++++.||+|||+|.|.+. . .+..|.++||++...  +.++++||.+.|+|+++..+.....||+
T Consensus        60 lp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l-~~~~L~v~V~~d~~~--~~~~~~iG~~~i~L~~l~~~~~~~~Wy~  135 (146)
T cd04028          60 LEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-P-TGKTLQVIVWGDYGR--MDKKVFMGVAQILLDDLDLSNLVIGWYK  135 (146)
T ss_pred             ECCCccccceeceecCCCCCCccCCeEEEEEc-C-CCCEEEEEEEeCCCC--CCCCceEEEEEEEcccccCCCCceeEEe
Confidence            542     569999999999999999999998 3 567899999964322  6788999999999999866666789999


Q ss_pred             eCCC
Q 008950          531 LINS  534 (548)
Q Consensus       531 L~~~  534 (548)
                      |.+.
T Consensus       136 L~~~  139 (146)
T cd04028         136 LFPT  139 (146)
T ss_pred             cCCc
Confidence            9865

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.76  E-value=8e-18  Score=145.06  Aligned_cols=110  Identities=20%  Similarity=0.424  Sum_probs=93.0

Q ss_pred             EEEEEEeeeec---CCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC---
Q 008950          430 LLSVLVQGAED---VEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG---  500 (548)
Q Consensus       430 ~L~V~v~~a~~---L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~---  500 (548)
                      +|+|+|++|++   |+.   .+.+||||++++++++.+|++++++.||+|||+|.|.+.++  ...|.|+|||++..   
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~   78 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK   78 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence            48899999999   654   46899999999999999999999999999999999999874  35899999998741   


Q ss_pred             ccCCCCcceEEEEEechhhhccceeceEEEeCCC------CCeEEEE
Q 008950          501 IRFWSKESLGHVEINLTDVVHNGRINEKYHLINS------KRGVIHV  541 (548)
Q Consensus       501 ~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l  541 (548)
                      ....+|++||++.++|+++..+....+||+|.+.      +.|+|++
T Consensus        79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence            0014899999999999999988888999999843      3677764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.76  E-value=5.8e-18  Score=147.02  Aligned_cols=115  Identities=23%  Similarity=0.381  Sum_probs=97.3

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC----CCCCcEEEEEEcC-
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG-  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l~~-  457 (548)
                      +|+|++++.|.+.                                .+.|.|+|++|+||+..    +.+||||++++.. 
T Consensus         1 ~G~i~~sl~y~~~--------------------------------~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~   48 (125)
T cd08393           1 QGSVQFALDYDPK--------------------------------LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD   48 (125)
T ss_pred             CcEEEEEEEEECC--------------------------------CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC
Confidence            5999999999863                                47899999999999762    5799999999953 


Q ss_pred             ----eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       458 ----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                          .+++|++++++.||+|||+|.|.+..... ...|.++|||++.   ++++++||++.++|.++..+.....||+|.
T Consensus        49 ~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~---~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          49 KSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS---LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             CCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC---CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence                34699999999999999999999865322 3589999999874   678999999999999997666678899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.76  E-value=9.2e-18  Score=144.75  Aligned_cols=109  Identities=26%  Similarity=0.376  Sum_probs=96.0

Q ss_pred             EEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceE
Q 008950          431 LSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLG  510 (548)
Q Consensus       431 L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG  510 (548)
                      |+|+|++|+||+.. .+||||++.+++...+|++++++.||+|||+|.|.+..+ ....|.++|||++.   . .+++||
T Consensus         2 L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~---~-~~~~lG   75 (121)
T cd08378           2 LYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK---A-KDDFLG   75 (121)
T ss_pred             EEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC---C-cCceee
Confidence            78999999999987 899999999999889999999999999999999998764 45689999999974   3 789999


Q ss_pred             EEEEechhhhccc-----eeceEEEeCCCC----CeEEEEEEEE
Q 008950          511 HVEINLTDVVHNG-----RINEKYHLINSK----RGVIHVDIRW  545 (548)
Q Consensus       511 ~~~i~L~~l~~~~-----~~~~w~~L~~~~----~G~i~l~~~~  545 (548)
                      ++.++|+++..+.     ...+||+|.+.+    .|+|+|+++|
T Consensus        76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            9999999987532     246899998764    6999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.76  E-value=1.9e-17  Score=143.19  Aligned_cols=112  Identities=19%  Similarity=0.378  Sum_probs=99.1

Q ss_pred             EEEEEeeeecCCC---CCCCCcEEEEEEcC-eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950          431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK  506 (548)
Q Consensus       431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d  506 (548)
                      |+|+|++|++|+.   .+.+||||++++++ ..++|++++++.||+|||.|.|.+.+.  .+.+.++|||++.   .+.|
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~---~~~~   76 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR---GLTD   76 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC---CCCC
Confidence            7899999999986   35899999999987 467999999999999999999998764  4689999999985   5789


Q ss_pred             cceEEEEEechhhhccceeceEEEeCCCC----CeEEEEEEEEEe
Q 008950          507 ESLGHVEINLTDVVHNGRINEKYHLINSK----RGVIHVDIRWKM  547 (548)
Q Consensus       507 ~~lG~~~i~L~~l~~~~~~~~w~~L~~~~----~G~i~l~~~~~~  547 (548)
                      ++||++.++++++..+...+.|++|.+.+    .|+|+|.++++|
T Consensus        77 ~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          77 DFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             cceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence            99999999999999887788999998654    699999999876

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.76  E-value=6.8e-18  Score=146.71  Aligned_cols=110  Identities=35%  Similarity=0.456  Sum_probs=95.8

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD  336 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d  336 (548)
                      +....+.|.|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d   90 (124)
T cd08385          11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD   90 (124)
T ss_pred             EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence            4456689999999999999999889999999999976554457999999999999999999998642  35689999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      ++.++++++||++.++++++..+.....|+++
T Consensus        91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08385          91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL  122 (124)
T ss_pred             CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence            99999999999999999999877777777775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.76  E-value=9.6e-18  Score=148.95  Aligned_cols=123  Identities=28%  Similarity=0.363  Sum_probs=95.9

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEe---------------cCCCC
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVK---------------EPESQ  328 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~---------------~~~~~  328 (548)
                      |.|+|++|+||+.  .+|.+||||++++.+..  ...++|+++++|.||+|||+|.|.+.               +....
T Consensus         2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            7899999999998  46899999999998632  23468999999999999999999995               11235


Q ss_pred             EEEEEEEEcCCCCCCCeeEEEEEECcccCCC-CceEEEEeccccccCCC-----CCCCccccEEEEEE
Q 008950          329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISD-----PKDMKQRGKIVVEL  390 (548)
Q Consensus       329 ~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~-----~~~~~~~G~l~l~l  390 (548)
                      .|.|+|||++..++|++||++.++++++..+ .....|++|....+..+     ..+....|.|++++
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI  147 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence            7999999999888999999999999999986 55667777754433221     11234557777664

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.75  E-value=2.6e-17  Score=144.73  Aligned_cols=115  Identities=24%  Similarity=0.511  Sum_probs=101.1

Q ss_pred             CceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccC
Q 008950          427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRF  503 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~  503 (548)
                      ..|.|+|+|++|++|+.   .+.+||||++.++++.++|++++++.||.|||.|.|.+.++ ..+.|.++|||++.   +
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~---~   88 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF---F   88 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC---C
Confidence            46999999999999975   35899999999999999999999999999999999999775 45689999999984   6


Q ss_pred             CCCcceEEEEEechhhhc-----cceeceEEEeCCCCCeEEEEEEEE
Q 008950          504 WSKESLGHVEINLTDVVH-----NGRINEKYHLINSKRGVIHVDIRW  545 (548)
Q Consensus       504 ~~d~~lG~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~  545 (548)
                      +.|++||++.+++.++..     .....+|.+|.+...|+|+|++.+
T Consensus        89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          89 SPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            778999999999999987     334567888877778999999986

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.75  E-value=1e-17  Score=145.96  Aligned_cols=110  Identities=28%  Similarity=0.374  Sum_probs=92.2

Q ss_pred             ccCCceEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEE-Ee--cCCCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~--~~~~~~L~v~v  334 (548)
                      ++...+.|.|+|++|+||+..+.. |.+||||++++.+.....+||++++++.||+|||+|.|. +.  +.....|.++|
T Consensus        11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V   90 (128)
T cd08388          11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV   90 (128)
T ss_pred             EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence            455668999999999999998876 899999999997655455799999999999999999993 43  22345799999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCC--CceEEEEec
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDL  368 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~--~~~~~~l~l  368 (548)
                      ||+|..++|++||++.++|+++...  +....|+++
T Consensus        91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~  126 (128)
T cd08388          91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI  126 (128)
T ss_pred             EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence            9999999999999999999999655  455677776

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.75  E-value=2.1e-17  Score=145.23  Aligned_cols=116  Identities=28%  Similarity=0.440  Sum_probs=100.7

Q ss_pred             ceEEEEEEEEecCccccCCC----------CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEE
Q 008950          263 VGILHVKVVRASKLLKKDFL----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQL  332 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~----------g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v  332 (548)
                      .|.|+|+|++|++|+..|..          |.+||||+++++++..  .+|++++++.||.|||+|.|.+.  ....|.|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~   78 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL   78 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence            48999999999999988863          6799999999987543  58999999999999999999996  3578999


Q ss_pred             EEEEcCCCCCCCeeEEEEEECcccCC--CCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          333 QVFDWDKVGGHDRLGMQLVPLKLLTP--HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       333 ~v~d~d~~~~dd~lG~~~i~l~~l~~--~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      .|||++..+++++||++.++|+++..  +.....|++|.            ..|+|++++.|..
T Consensus        79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~  130 (132)
T cd04014          79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG  130 (132)
T ss_pred             EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence            99999988899999999999999987  56677888872            4699999998875

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.75  E-value=5.8e-18  Score=145.89  Aligned_cols=102  Identities=18%  Similarity=0.167  Sum_probs=89.6

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc---cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL  332 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v  332 (548)
                      .++...+.|.|+|++|+||+..+..|.+||||++++.+..   ...++|++++++.||+|||+|.|.+...  ....|.+
T Consensus         8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~   87 (124)
T cd08680           8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV   87 (124)
T ss_pred             EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence            3556678999999999999999888899999999998765   2468999999999999999999998642  4679999


Q ss_pred             EEEEcCCCCCCCeeEEEEEECcccCCC
Q 008950          333 QVFDWDKVGGHDRLGMQLVPLKLLTPH  359 (548)
Q Consensus       333 ~v~d~d~~~~dd~lG~~~i~l~~l~~~  359 (548)
                      +|||++..+++++||++.++|+++...
T Consensus        88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~  114 (124)
T cd08680          88 DVCSVGPDQQEECLGGAQISLADFESS  114 (124)
T ss_pred             EEEeCCCCCceeEEEEEEEEhhhccCC
Confidence            999999999999999999999999544

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=1.9e-17  Score=147.86  Aligned_cols=113  Identities=22%  Similarity=0.324  Sum_probs=96.4

Q ss_pred             EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccC-CCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC
Q 008950          430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS  505 (548)
Q Consensus       430 ~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~  505 (548)
                      .|.|+|++|+||+.   .+.+||||+++++++.++|+++.+ +.||+|||.|+|.+.++ ..+.+.++|+|++.   .+.
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~---~~~   76 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG---PNK   76 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC---CCC
Confidence            37899999999965   358999999999999999999876 69999999999999774 44689999999874   567


Q ss_pred             CcceEEEEEechhhhcc----ceeceEEEeCCCC-----------CeEEEEEEEEE
Q 008950          506 KESLGHVEINLTDVVHN----GRINEKYHLINSK-----------RGVIHVDIRWK  546 (548)
Q Consensus       506 d~~lG~~~i~L~~l~~~----~~~~~w~~L~~~~-----------~G~i~l~~~~~  546 (548)
                      |++||++.++|+++..+    ....+||+|.+..           +|+|+|++.+.
T Consensus        77 dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          77 DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             CCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            89999999999998753    3468999998653           39999999875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.75  E-value=2.2e-17  Score=142.66  Aligned_cols=118  Identities=25%  Similarity=0.435  Sum_probs=98.2

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR  345 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~  345 (548)
                      |.|+|++|++|++.|..|.+||||++++++...  ++|++++++.||.|||.|.|.+.+ ..+.|.|+|||++..++|++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~--~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~   78 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVI--IRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDV   78 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEee--eeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCE
Confidence            789999999999999999999999999986442  689999999999999999999864 34789999999999999999


Q ss_pred             eEEEEEECcccCCC-CceEEEEeccccccCCCCCCCccccEEEEEEE
Q 008950          346 LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELT  391 (548)
Q Consensus       346 lG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~  391 (548)
                      ||++.+++.++..+ .....|++|...     .......|+|++.++
T Consensus        79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~  120 (121)
T cd04054          79 IGKVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence            99999999888754 235677777432     112457899998874

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.75  E-value=1.3e-17  Score=143.17  Aligned_cols=102  Identities=20%  Similarity=0.328  Sum_probs=85.9

Q ss_pred             ceEEEEEEeeeecCCCC--CCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC
Q 008950          428 AGLLSVLVQGAEDVEGE--NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG  500 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~--~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~  500 (548)
                      .+.|.|+|++|+||+..  +.+||||++++..     .++||++++++.||+|||+|.|.+........+.++|||++..
T Consensus        11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~   90 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK   90 (119)
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence            47899999999999763  5789999999964     3569999999999999999999987643445799999998752


Q ss_pred             ccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950          501 IRFWSKESLGHVEINLTDVVHNGRINEKYHL  531 (548)
Q Consensus       501 ~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L  531 (548)
                        ..++++||.+.|+|.++..++...+||.|
T Consensus        91 --~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          91 --SRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             --cCCCEEEEEEEecHHHhccCccccceEeC
Confidence              23578999999999999877778899986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.75  E-value=3.5e-18  Score=149.78  Aligned_cols=126  Identities=22%  Similarity=0.389  Sum_probs=103.5

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC-----CCCCcEEEEEEcC
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE-----NHNNPYAIILYKG  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~-----~~~dpyv~v~l~~  457 (548)
                      .|+|.+++.|.|.                                .+.|.|.|++|+||...     +.+||||++++..
T Consensus         1 ~Gel~~sL~Y~~~--------------------------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~   48 (138)
T cd08407           1 TGEVLLSISYLPA--------------------------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKH   48 (138)
T ss_pred             CCEEEEEEEEeCC--------------------------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEc
Confidence            4999999999985                                57899999999999753     3489999999865


Q ss_pred             e-----EEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950          458 D-----KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL  531 (548)
Q Consensus       458 ~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L  531 (548)
                      .     ++||++++++.||+|||.|.|.+..... +..|.++|||.+.   ++++++||++.+++..  .+....+|..+
T Consensus        49 ~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~---~~~~d~iG~v~lg~~~--~g~~~~hW~~m  123 (138)
T cd08407          49 QNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS---PGQSLPLGRCSLGLHT--SGTERQHWEEM  123 (138)
T ss_pred             CCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC---CcCcceeceEEecCcC--CCcHHHHHHHH
Confidence            2     4599999999999999999999976433 3479999999985   6889999999999975  34455788888


Q ss_pred             CCCCCeEEEEEEEEEeC
Q 008950          532 INSKRGVIHVDIRWKMI  548 (548)
Q Consensus       532 ~~~~~G~i~l~~~~~~~  548 (548)
                      ..+++-.|.   +|+++
T Consensus       124 l~~p~~~va---~WH~L  137 (138)
T cd08407         124 LDNPRRQIA---MWHQL  137 (138)
T ss_pred             HhCCCCchh---EEEEC
Confidence            777666665   77764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.75  E-value=3.7e-17  Score=142.53  Aligned_cols=118  Identities=31%  Similarity=0.434  Sum_probs=100.0

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD  344 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd  344 (548)
                      .|+|+|++|++|+..+..+.+||||++.+.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            58999999999999998899999999998765334479999999999999999999997755678999999999888999


Q ss_pred             eeEEEEEECcccCC---CCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          345 RLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       345 ~lG~~~i~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      +||++.++++++..   +.....|+++.            ..|++++.+.+.-
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~  122 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG  122 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence            99999999987643   34566788762            2689999988764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=1.9e-17  Score=144.47  Aligned_cols=113  Identities=27%  Similarity=0.429  Sum_probs=96.9

Q ss_pred             EEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCC--CCeEEEEEEEccCCccCC-
Q 008950          431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL--HEKIHIEVMSKRTGIRFW-  504 (548)
Q Consensus       431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~l~v~V~d~~~~~~~~-  504 (548)
                      |+|+|++|++|+.   .+.+||||++++++++++|++++++.||+|||.|.|.+..+..  ...|.++|||++.   +. 
T Consensus         2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~---~~~   78 (127)
T cd04022           2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR---SGR   78 (127)
T ss_pred             eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC---CcC
Confidence            7899999999975   3579999999999999999999999999999999999976422  3579999999874   44 


Q ss_pred             CCcceEEEEEechhhh-ccceeceEEEeCCC-----CCeEEEEEEEEE
Q 008950          505 SKESLGHVEINLTDVV-HNGRINEKYHLINS-----KRGVIHVDIRWK  546 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~-~~~~~~~w~~L~~~-----~~G~i~l~~~~~  546 (548)
                      .|++||++.++++++. .+....+||+|...     .+|+|+|++.++
T Consensus        79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            7899999999999997 44556899999864     389999999875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.74  E-value=1.1e-17  Score=140.89  Aligned_cols=94  Identities=22%  Similarity=0.315  Sum_probs=82.1

Q ss_pred             eEEEEEEEEecCccccCCC----CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC-CCEEEEEEEEcC
Q 008950          264 GILHVKVVRASKLLKKDFL----GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD  338 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~----g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d  338 (548)
                      |+|.|+|++|++|+..+..    +.+||||++++++..   +||++++++.||+|||+|.|.+.+.. ...|.|+|||+|
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d   77 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD   77 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence            7899999999999987642    358999999997644   58999999999999999999986543 457999999999


Q ss_pred             CCCCCCeeEEEEEECcccCCCC
Q 008950          339 KVGGHDRLGMQLVPLKLLTPHE  360 (548)
Q Consensus       339 ~~~~dd~lG~~~i~l~~l~~~~  360 (548)
                      ..++|++||++.++|+++..+.
T Consensus        78 ~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          78 KFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCCCCcceEEEEEEHHHHHhhC
Confidence            9999999999999999998653

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.74  E-value=1.9e-17  Score=143.95  Aligned_cols=115  Identities=22%  Similarity=0.338  Sum_probs=96.2

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC----CCCCcEEEEEEcC-
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG-  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l~~-  457 (548)
                      .|+|++++.|.+.                                .+.|.|+|++|+||+..    +.+||||++++.. 
T Consensus         1 ~G~i~~sl~Y~~~--------------------------------~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~   48 (128)
T cd08392           1 TGEIEFALHYNFR--------------------------------TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD   48 (128)
T ss_pred             CcEEEEEEEEeCC--------------------------------CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC
Confidence            4999999999974                                57899999999999752    6789999999953 


Q ss_pred             ----eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhcc---ceeceEE
Q 008950          458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN---GRINEKY  529 (548)
Q Consensus       458 ----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~---~~~~~w~  529 (548)
                          .++||++++++.||+|||+|.|.+..... ...|.+.|||.+.   ++++++||++.|+|+++.-.   ....+||
T Consensus        49 ~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~---~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~  125 (128)
T cd08392          49 KSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT---LKRRVFLGEVLIPLADWDFEDTDSQRFLWY  125 (128)
T ss_pred             CcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC---CcCcceEEEEEEEcCCcccCCCCccccceE
Confidence                35699999999999999999999866323 3489999999875   67889999999999999442   3668999


Q ss_pred             EeC
Q 008950          530 HLI  532 (548)
Q Consensus       530 ~L~  532 (548)
                      +|.
T Consensus       126 ~l~  128 (128)
T cd08392         126 PLN  128 (128)
T ss_pred             ECc
Confidence            983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.74  E-value=3e-17  Score=141.53  Aligned_cols=110  Identities=22%  Similarity=0.426  Sum_probs=96.8

Q ss_pred             EEEEEeeeecCCCC---CCCCcEEEEEEcC---eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          431 LSVLVQGAEDVEGE---NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       431 L~V~v~~a~~L~~~---~~~dpyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      |+|+|++|++|+..   +.+||||++++++   ..++|++++++.||+|||+|.|.+... ..+.|.|+|||++.   . 
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~---~-   76 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY---V-   76 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC---C-
Confidence            78999999999863   5799999999964   457999999999999999999999775 45679999999874   5 


Q ss_pred             CCcceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEE
Q 008950          505 SKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRW  545 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~  545 (548)
                      .|++||++.++++++..+.....||+|.+.+.|++++++..
T Consensus        77 ~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          77 MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             CCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence            88999999999999988888899999998889999998865

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.74  E-value=4.8e-17  Score=143.38  Aligned_cols=120  Identities=25%  Similarity=0.433  Sum_probs=98.1

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC---------CCCEEEEEEE
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQLQVF  335 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------~~~~L~v~v~  335 (548)
                      .|+|+|++|++|+..|..|.+||||++++++..   ++|+++++|.||.|||+|.|.+...         ....+.++||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~   78 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF   78 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence            589999999999999999999999999998654   6899999999999999999975432         1257999999


Q ss_pred             EcCCCCCCCeeEEEEE-ECcccCC---CCceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950          336 DWDKVGGHDRLGMQLV-PLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF  395 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i-~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  395 (548)
                      |+|..++|++||++.+ ++..+..   ......|++|.+        .+...|+|.+++++.+.
T Consensus        79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~  134 (135)
T cd04017          79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV  134 (135)
T ss_pred             eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence            9999999999999987 4444432   345567777743        24578999999999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.74  E-value=2.1e-17  Score=142.62  Aligned_cols=106  Identities=29%  Similarity=0.421  Sum_probs=90.3

Q ss_pred             eeccccccccccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec-CCC
Q 008950          249 IPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PES  327 (548)
Q Consensus       249 ~~l~~~~~~~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~~  327 (548)
                      -|+++..........|.|+|+|++|++|+. +..|.+||||++++++.   .++|++++++.||+|||+|.|.... ...
T Consensus        13 ~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~   88 (127)
T cd04032          13 SPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPG   88 (127)
T ss_pred             CCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCCC
Confidence            466665554567788999999999999984 66789999999999876   3699999999999999999997533 356


Q ss_pred             CEEEEEEEEcCCCCCCCeeEEEEEECcccCC
Q 008950          328 QILQLQVFDWDKVGGHDRLGMQLVPLKLLTP  358 (548)
Q Consensus       328 ~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~  358 (548)
                      +.|+|+|||++..++|++||++.+++.....
T Consensus        89 ~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032          89 GKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             CEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence            8999999999999999999999999997663

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.74  E-value=1.9e-17  Score=144.02  Aligned_cols=101  Identities=30%  Similarity=0.354  Sum_probs=87.6

Q ss_pred             ccCCceEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~  333 (548)
                      +....+.|.|+|++|+||+.++.. |.+||||++++.+..  ..++||++++++.||+|||+|.|.+...  ....|.+.
T Consensus        10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~   89 (128)
T cd08392          10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS   89 (128)
T ss_pred             EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence            445568999999999999999875 899999999997654  3356999999999999999999998642  35689999


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCC
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPH  359 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~  359 (548)
                      |||.+.++++++||++.|+|+++...
T Consensus        90 V~~~~~~~~~~~lG~~~i~L~~~~~~  115 (128)
T cd08392          90 VWHSRTLKRRVFLGEVLIPLADWDFE  115 (128)
T ss_pred             EEeCCCCcCcceEEEEEEEcCCcccC
Confidence            99999999999999999999998654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.74  E-value=5.1e-17  Score=141.75  Aligned_cols=117  Identities=32%  Similarity=0.460  Sum_probs=100.6

Q ss_pred             EEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEEcCCCCCCCeeE
Q 008950          270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGHDRLG  347 (548)
Q Consensus       270 V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~dd~lG  347 (548)
                      |++|++|+.  ..|.+||||++++++.+   ++|++++++.||+|||+|.|.+...  ..+.|.|+|||++..++|++||
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG   76 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG   76 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence            689999998  67899999999998754   5899999999999999999999754  4688999999999988999999


Q ss_pred             EEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEeccc
Q 008950          348 MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE  397 (548)
Q Consensus       348 ~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~  397 (548)
                      ++.++++++..+.....+++|...      ......|+|+++++|.|...
T Consensus        77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG  120 (127)
T ss_pred             EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence            999999999988888888888432      12335799999999999754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.73  E-value=6.6e-17  Score=140.81  Aligned_cols=112  Identities=21%  Similarity=0.320  Sum_probs=97.3

Q ss_pred             EEEEEeeeecCCC-CCCCCcEEEEEEcC--eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCc
Q 008950          431 LSVLVQGAEDVEG-ENHNNPYAIILYKG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKE  507 (548)
Q Consensus       431 L~V~v~~a~~L~~-~~~~dpyv~v~l~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~  507 (548)
                      |.|+|++|+||+. .+.+||||++++++  ++++|++++++.||+|||.|.|.+..  ..+.|.|+|||++.   .+.|+
T Consensus         1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~---~~~~~   75 (126)
T cd08678           1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGK---KSDSK   75 (126)
T ss_pred             CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCC---CCCCc
Confidence            5789999999976 35799999999974  56799999999999999999999864  35689999999985   56799


Q ss_pred             ceEEEEEechhhhccceeceEEEeCCC------CCeEEEEEEEEEe
Q 008950          508 SLGHVEINLTDVVHNGRINEKYHLINS------KRGVIHVDIRWKM  547 (548)
Q Consensus       508 ~lG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~~  547 (548)
                      +||++.++++++.......+||+|...      ..|+|+++++|.+
T Consensus        76 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~  121 (126)
T cd08678          76 FLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME  121 (126)
T ss_pred             eEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence            999999999999988777899999754      4899999999964

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.73  E-value=4.9e-17  Score=140.87  Aligned_cols=118  Identities=36%  Similarity=0.552  Sum_probs=95.6

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC--C
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG--H  343 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~--d  343 (548)
                      |+|+|++|++|+..+..+.+||||++++++..  .++|++++++.||.|||+|.|.+..  .+.|.|+|||++..++  |
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d   77 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQ--THSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ   77 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCcc--ceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence            78999999999999988999999999997532  3689999999999999999999965  6799999999998765  5


Q ss_pred             CeeEEEEEECcccCCCC-ceEEEEeccccccCCCCCCCccccEEEEEE
Q 008950          344 DRLGMQLVPLKLLTPHE-TKEFTLDLLKHTNISDPKDMKQRGKIVVEL  390 (548)
Q Consensus       344 d~lG~~~i~l~~l~~~~-~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l  390 (548)
                      ++||++.++++++.... ....|+++.+.. +  ...+...|+|.+++
T Consensus        78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~-~--~~~~~~~G~v~~~~  122 (123)
T cd08382          78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLK-K--SDNLSVRGKIVVSL  122 (123)
T ss_pred             ceEeEEEEEHHHccccCCCccceeEeecCC-C--CCCceEeeEEEEEe
Confidence            79999999999987654 334566663321 1  12356689998876

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.73  E-value=3.7e-17  Score=142.27  Aligned_cols=111  Identities=38%  Similarity=0.556  Sum_probs=95.1

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec---CCCCEEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF  335 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~  335 (548)
                      +....+.|.|+|++|+||+..+..+.+||||++++.+.....++|++++++.||.|||+|.|.+..   .....|.++||
T Consensus        11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~   90 (125)
T cd08386          11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL   90 (125)
T ss_pred             ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence            455678999999999999999988999999999996543345799999999999999999997532   23467999999


Q ss_pred             EcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      |++..+++++||++.++++++..+.....|+.|.
T Consensus        91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            9999999999999999999999887778888763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.73  E-value=4.4e-17  Score=138.56  Aligned_cols=104  Identities=26%  Similarity=0.361  Sum_probs=89.0

Q ss_pred             eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcc
Q 008950          429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKES  508 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~  508 (548)
                      +.|.|+|.+|++|+..+..||||++.+++.+.+|++.++ .||.|||.|.|.+.+.  +..|.|+|||++    ...|++
T Consensus         2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd----~~~DD~   74 (127)
T cd08394           2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKG----LIWDTL   74 (127)
T ss_pred             ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCC----CcCCCc
Confidence            579999999999998888899999999998889999988 5999999999999764  345999999987    348999


Q ss_pred             eEEEEEechhhhccce--eceEEEeCCC---CCeEE
Q 008950          509 LGHVEINLTDVVHNGR--INEKYHLINS---KRGVI  539 (548)
Q Consensus       509 lG~~~i~L~~l~~~~~--~~~w~~L~~~---~~G~i  539 (548)
                      ||++.|+|+++..+..  ..+||+|...   ++|++
T Consensus        75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~  110 (127)
T cd08394          75 VGTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI  110 (127)
T ss_pred             eEEEEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence            9999999999987643  3799999743   45554

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.73  E-value=3.6e-17  Score=141.81  Aligned_cols=110  Identities=27%  Similarity=0.356  Sum_probs=95.8

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEE-Eec--CCCCEEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQV  334 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~v  334 (548)
                      .++...+.|.|+|++|+||+..+..|.+||||++.+.+....+++|+++++ .||+|||+|.|. +..  .....|.++|
T Consensus        10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V   88 (124)
T cd08389          10 EYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL   88 (124)
T ss_pred             EECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence            355667899999999999999998899999999998776556679999887 999999999998 542  2467899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      ||++..+++++||++.++|+++..++....|++|
T Consensus        89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L  122 (124)
T cd08389          89 YGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL  122 (124)
T ss_pred             EECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence            9999999999999999999999888888888876

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.73  E-value=7.7e-17  Score=138.99  Aligned_cols=110  Identities=17%  Similarity=0.321  Sum_probs=95.1

Q ss_pred             EEEEEeeeecCCCC----CCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC
Q 008950          431 LSVLVQGAEDVEGE----NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS  505 (548)
Q Consensus       431 L~V~v~~a~~L~~~----~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~  505 (548)
                      |.|.|.+|+||+..    +.+||||++.++++ .++|+++++|.||.|||+|.|.+.+.  ...|.+.|||++.   ++.
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~---~~~   76 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV---LRR   76 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC---CCC
Confidence            67899999999863    46899999999775 46999999999999999999999763  4689999999985   678


Q ss_pred             CcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 008950          506 KESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDIRW  545 (548)
Q Consensus       506 d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  545 (548)
                      |++||.+.++++++..+...+.||+|...     ..|+|+|++++
T Consensus        77 ~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          77 DSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             CceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            99999999999999877777899999753     27999999864

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.73  E-value=5e-17  Score=141.23  Aligned_cols=115  Identities=23%  Similarity=0.405  Sum_probs=98.7

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK---  456 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~---  456 (548)
                      +|+|++++.|.+.                                .+.|.|+|++|+||+.   .+.+||||++++.   
T Consensus         2 ~G~l~~sl~y~~~--------------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~   49 (124)
T cd08387           2 RGELHFSLEYDKD--------------------------------MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR   49 (124)
T ss_pred             CCEEEEEEEECCC--------------------------------CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC
Confidence            6999999999863                                5789999999999976   3579999999994   


Q ss_pred             CeEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          457 GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       457 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                      ...++|++++++.||+|||+|.|.+..... ...|.++|||++.   ++.+++||++.++|+++..++....||+|.
T Consensus        50 ~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~---~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          50 SNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ---FSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC---CCCCceeEEEEEecccccCCCCcceEEECc
Confidence            245799999999999999999999875322 3489999999974   678999999999999998777788999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.73  E-value=5.6e-17  Score=136.45  Aligned_cols=98  Identities=24%  Similarity=0.527  Sum_probs=86.9

Q ss_pred             EEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCc
Q 008950          431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKE  507 (548)
Q Consensus       431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~  507 (548)
                      |.|+|++|++|+.   .+.+||||+++++++.++|++++++.||+|||.|.|.+.++ ..+.|.|+|+|++.      ++
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~------~~   74 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT------GK   74 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC------CC
Confidence            7899999999986   35899999999999999999999999999999999999885 45689999999862      78


Q ss_pred             ceEEEEEechhhhccc--eeceEEEeCCCC
Q 008950          508 SLGHVEINLTDVVHNG--RINEKYHLINSK  535 (548)
Q Consensus       508 ~lG~~~i~L~~l~~~~--~~~~w~~L~~~~  535 (548)
                      +||++.++|.++....  ..++||+|.+.+
T Consensus        75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g  104 (105)
T cd04050          75 SLGSLTLPLSELLKEPDLTLDQPFPLDNSG  104 (105)
T ss_pred             ccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence            9999999999998754  678999998653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.73  E-value=1.8e-17  Score=143.08  Aligned_cols=126  Identities=13%  Similarity=0.262  Sum_probs=102.1

Q ss_pred             cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC---
Q 008950          384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG---  457 (548)
Q Consensus       384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~---  457 (548)
                      .+|.++++|.|.                                .|.|+|+|++|+||+..   +.+||||++++..   
T Consensus         1 ~el~~sL~Y~p~--------------------------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k   48 (135)
T cd08692           1 AELQLGTCFQAV--------------------------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGG   48 (135)
T ss_pred             CeEEEEeeecCc--------------------------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCC
Confidence            378999999985                                68899999999999874   3569999999843   


Q ss_pred             --eEEEeeeccCCC-CCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          458 --DKKRTKMIRKTR-DPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       458 --~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                        +++||+++++|. ||+|||+|.|.+.....+-.+.|+|||++.   .+++++||++.++.++. .....++|..+..+
T Consensus        49 ~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~---~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~  124 (135)
T cd08692          49 LLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS---VRRKHFLGQVWISSDSS-SSEAVEQWKDTIAN  124 (135)
T ss_pred             cceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC---CcCCceEEEEEECCccC-CchhhhhHHHHHhC
Confidence              356999999995 699999999999875333378889999874   67899999999999863 23345799999888


Q ss_pred             CCeEEEEEEEEEeC
Q 008950          535 KRGVIHVDIRWKMI  548 (548)
Q Consensus       535 ~~G~i~l~~~~~~~  548 (548)
                      ++-.|.   +|+++
T Consensus       125 pr~~ia---~WH~L  135 (135)
T cd08692         125 PEKVVT---KWHSL  135 (135)
T ss_pred             CCCeee---EeecC
Confidence            777776   88875

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.73  E-value=1.1e-17  Score=146.68  Aligned_cols=125  Identities=23%  Similarity=0.386  Sum_probs=102.2

Q ss_pred             cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 008950          384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD--  458 (548)
Q Consensus       384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~--  458 (548)
                      |+|.++++|.|.                                .+.|.|+|++|+||+.   .+.+||||++++...  
T Consensus         2 G~i~~sL~Y~~~--------------------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~   49 (136)
T cd08406           2 GEILLSLSYLPT--------------------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGR   49 (136)
T ss_pred             cEEEEEEEEcCC--------------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCc
Confidence            899999999975                                4679999999999986   357899999999432  


Q ss_pred             ---EEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          459 ---KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       459 ---~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                         ++||++++++.||+|||+|.|.+..... +..|.|+|+|++.   ++++++||++.|+...  .+....+|+.+..+
T Consensus        50 ~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~---~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~  124 (136)
T cd08406          50 KISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE---DGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS  124 (136)
T ss_pred             cccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC---CCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence               4589999999999999999999876432 3479999999985   6789999999998764  34456789998888


Q ss_pred             CCeEEEEEEEEEeC
Q 008950          535 KRGVIHVDIRWKMI  548 (548)
Q Consensus       535 ~~G~i~l~~~~~~~  548 (548)
                      ++-.|.   +|+.+
T Consensus       125 ~~~~v~---~WH~l  135 (136)
T cd08406         125 LRKPVA---MWHPL  135 (136)
T ss_pred             CCCeee---Eeeec
Confidence            766555   78764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.72  E-value=1.5e-16  Score=139.75  Aligned_cols=112  Identities=23%  Similarity=0.393  Sum_probs=97.6

Q ss_pred             ceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEE
Q 008950          428 AGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE  493 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~-------------~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~  493 (548)
                      .|.|+|+|++|++|...             +.+||||++.++++. .+|++++++.||.|||+|+|.+.+   ...+.|+
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~   79 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT   79 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence            58999999999999652             358999999999876 599999999999999999999964   3689999


Q ss_pred             EEEccCCccCCCCcceEEEEEechhhhc--cceeceEEEeCCCCCeEEEEEEEEEe
Q 008950          494 VMSKRTGIRFWSKESLGHVEINLTDVVH--NGRINEKYHLINSKRGVIHVDIRWKM  547 (548)
Q Consensus       494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~--~~~~~~w~~L~~~~~G~i~l~~~~~~  547 (548)
                      |+|++.   .+.+++||++.++|+++..  +...+.||+|.  ++|+|+|+++|+.
T Consensus        80 v~d~~~---~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~  130 (132)
T cd04014          80 VFHDAA---IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG  130 (132)
T ss_pred             EEeCCC---CCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence            999874   5678999999999999987  45668999997  6899999999974

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.72  E-value=2.1e-17  Score=141.92  Aligned_cols=105  Identities=24%  Similarity=0.267  Sum_probs=87.4

Q ss_pred             CceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCC-CCEEEEEEEEcC
Q 008950          262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD  338 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d  338 (548)
                      ..+.|.|+|++|+||+..+ .|.+||||++++.+..  ..+++|++++++.||+|||+|.|.+.... ...|.|+|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4589999999999999998 8899999999998643  23468999999999999999999986422 357899999998


Q ss_pred             CCC-CCCeeEEEEEECcccCCCCceEEEEe
Q 008950          339 KVG-GHDRLGMQLVPLKLLTPHETKEFTLD  367 (548)
Q Consensus       339 ~~~-~dd~lG~~~i~l~~l~~~~~~~~~l~  367 (548)
                      ... ++++||++.+++.++..++....|+.
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~  118 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYY  118 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEe
Confidence            765 47899999999999986655555554

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=4.4e-17  Score=137.08  Aligned_cols=99  Identities=30%  Similarity=0.451  Sum_probs=87.1

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD  344 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd  344 (548)
                      .|.|+|++|++|+..+..+.+||||+++++++.   ++|++++++.||.|||+|.|.+.++..+.|.|+|||++.   ++
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~   74 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK   74 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEE---EeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence            378999999999999888999999999999743   689999999999999999999988777899999999985   78


Q ss_pred             eeEEEEEECcccCCCC--ceEEEEecc
Q 008950          345 RLGMQLVPLKLLTPHE--TKEFTLDLL  369 (548)
Q Consensus       345 ~lG~~~i~l~~l~~~~--~~~~~l~l~  369 (548)
                      +||++.+++.++....  ....|++|.
T Consensus        75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~  101 (105)
T cd04050          75 SLGSLTLPLSELLKEPDLTLDQPFPLD  101 (105)
T ss_pred             ccEEEEEEHHHhhccccceeeeeEecC
Confidence            9999999999998654  455677763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=4.6e-17  Score=141.26  Aligned_cols=110  Identities=31%  Similarity=0.414  Sum_probs=92.5

Q ss_pred             ccCCceEEEEEEEEecCccccC-CCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~  333 (548)
                      ++...+.|.|+|++|+||+..+ ..+.+||||++++.+..  ...++|++++++.||+|||+|.|.+...  ....|.|+
T Consensus         9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~   88 (123)
T cd08521           9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS   88 (123)
T ss_pred             EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence            4556799999999999999988 77899999999996432  2457899999999999999999998642  25689999


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      |||++..+++++||++.++++++..+.....|++|
T Consensus        89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            99999999999999999999999766555666653

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.71  E-value=6.6e-17  Score=141.14  Aligned_cols=110  Identities=30%  Similarity=0.338  Sum_probs=93.8

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v  334 (548)
                      +....+.|+|+|++|+||+..+..+.+||||++++.+..  ...++|++++++.||+|||+|.|.+...  ....|.+.|
T Consensus        11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v   90 (127)
T cd04030          11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV   90 (127)
T ss_pred             EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence            445678999999999999999988999999999997532  3457999999999999999999998532  357899999


Q ss_pred             EEcCCC--CCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          335 FDWDKV--GGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       335 ~d~d~~--~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      ||++..  +++++||++.+++.++..++....|++|
T Consensus        91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            999875  6899999999999999877766777765

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.71  E-value=6.7e-17  Score=139.30  Aligned_cols=101  Identities=21%  Similarity=0.310  Sum_probs=84.6

Q ss_pred             ceEEEEEEeeeecCCC---CCCCCcEEEEEEcC------eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEc
Q 008950          428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK  497 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~  497 (548)
                      .+.|.|+|++|+||+.   .+.+||||++++..      .+++|++++++.||+|||+|+|.+..... +..|.++||+.
T Consensus        13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~   92 (124)
T cd08680          13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSV   92 (124)
T ss_pred             CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeC
Confidence            5789999999999976   45799999999842      35799999999999999999999875433 34899999998


Q ss_pred             cCCccCCCCcceEEEEEechhhhcc-ceeceEEEe
Q 008950          498 RTGIRFWSKESLGHVEINLTDVVHN-GRINEKYHL  531 (548)
Q Consensus       498 ~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~w~~L  531 (548)
                      +.   .+++++||.+.++|+++... +...+||+|
T Consensus        93 ~~---~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          93 GP---DQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CC---CCceeEEEEEEEEhhhccCCCccccccccC
Confidence            74   67899999999999999444 456789976

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=1.1e-16  Score=139.39  Aligned_cols=114  Identities=27%  Similarity=0.399  Sum_probs=94.1

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~--  457 (548)
                      .|+|.+++.|.+.                                .+.|.|+|++|+||+.   .+.+||||++++.+  
T Consensus         2 ~G~l~~~l~~~~~--------------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~   49 (125)
T cd04031           2 TGRIQIQLWYDKV--------------------------------TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDR   49 (125)
T ss_pred             cEEEEEEEEEeCC--------------------------------CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCC
Confidence            5999999999874                                5789999999999976   35799999999965  


Q ss_pred             ---eEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                         ..++|++++++.||+|||+|.|.+....  ....|.++|||++.   .+.+++||++.++|++... ....+||+|+
T Consensus        50 ~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~---~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~  125 (125)
T cd04031          50 SEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR---DGENDFLGEVVIDLADALL-DDEPHWYPLQ  125 (125)
T ss_pred             CccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC---CCCCcEeeEEEEecccccc-cCCcceEECc
Confidence               4569999999999999999999864421  23589999999985   5788999999999998433 3346899984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.71  E-value=1e-16  Score=139.06  Aligned_cols=111  Identities=28%  Similarity=0.382  Sum_probs=96.0

Q ss_pred             cccCCceEEEEEEEEecCccccC-CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV  334 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v  334 (548)
                      .++...+.|.|+|++|+||+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus         8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v   87 (123)
T cd08390           8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV   87 (123)
T ss_pred             EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence            35566789999999999999998 678999999999965433457899999999999999999998643  245899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      ||++..+++++||++.++|+++........|++|
T Consensus        88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L  121 (123)
T cd08390          88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL  121 (123)
T ss_pred             EECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence            9999988899999999999999988888888876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.71  E-value=9.5e-17  Score=140.12  Aligned_cols=118  Identities=19%  Similarity=0.339  Sum_probs=98.4

Q ss_pred             cccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc--
Q 008950          382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--  456 (548)
Q Consensus       382 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~--  456 (548)
                      +.|+|.+++.|.+.                                .+.|.|+|++|+||+..   +.+||||++++.  
T Consensus         1 ~~G~l~~~l~y~~~--------------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~   48 (127)
T cd04030           1 PLGRIQLTIRYSSQ--------------------------------RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD   48 (127)
T ss_pred             CCeEEEEEEEEeCC--------------------------------CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC
Confidence            36999999999964                                57899999999999863   579999999995  


Q ss_pred             ---CeEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          457 ---GDKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       457 ---~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                         ...++|++++++.||+|||+|.|.+.... ....|.+.|||++.. ..+.+++||++.++|.++..+....+||+|.
T Consensus        49 ~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~-~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          49 KSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF-LSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             CCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc-cCCCCceEEEEEEecccccccCCccceEECc
Confidence               35679999999999999999999986532 235899999998741 0157899999999999998777778999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.71  E-value=1.1e-16  Score=135.97  Aligned_cols=99  Identities=24%  Similarity=0.485  Sum_probs=87.7

Q ss_pred             CCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhcc-
Q 008950          445 NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN-  522 (548)
Q Consensus       445 ~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~-  522 (548)
                      |.+||||+++++++ .++|++++++.||+|||.|.|.+.+. ..+.|.|+|+|++.   + +|++||++.++|++++.. 
T Consensus        11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~---~-~d~~iG~~~v~L~~l~~~~   85 (111)
T cd04052          11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD---R-HDPVLGSVSISLNDLIDAT   85 (111)
T ss_pred             CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC---C-CCCeEEEEEecHHHHHhhh
Confidence            57899999999885 46999999999999999999999875 45689999999884   5 899999999999999764 


Q ss_pred             ceeceEEEeCCCCCeEEEEEEEEEeC
Q 008950          523 GRINEKYHLINSKRGVIHVDIRWKMI  548 (548)
Q Consensus       523 ~~~~~w~~L~~~~~G~i~l~~~~~~~  548 (548)
                      ....+||+|.+.+.|+|+|+++|+|+
T Consensus        86 ~~~~~w~~L~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          86 SVGQQWFPLSGNGQGRIRISALWKPV  111 (111)
T ss_pred             hccceeEECCCCCCCEEEEEEEEecC
Confidence            44579999998889999999999996

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.71  E-value=1.9e-16  Score=142.91  Aligned_cols=113  Identities=20%  Similarity=0.433  Sum_probs=96.8

Q ss_pred             ceEEEEEEeeeecCCCC---------------------------------CCCCcEEEEEEcCeE-EEeeeccCCCCCcc
Q 008950          428 AGLLSVLVQGAEDVEGE---------------------------------NHNNPYAIILYKGDK-KRTKMIRKTRDPAW  473 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~---------------------------------~~~dpyv~v~l~~~~-~kT~v~~~t~nP~w  473 (548)
                      -|.|.|+|++|++|+..                                 +.+||||++.+++.+ .+|++++++.||+|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            48899999999999742                                 347999999999866 49999999999999


Q ss_pred             CceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC------CCeEEEEEEEEE
Q 008950          474 NEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS------KRGVIHVDIRWK  546 (548)
Q Consensus       474 ne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~  546 (548)
                      ||+|.|.+...  .+.|.++|+|++.   + ++++||++.++++++..+...++||+|.+.      +.|+|+++++|.
T Consensus        86 nE~F~~~~~~~--~~~l~~~V~d~d~---~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          86 NESFHIYCAHY--ASHVEFTVKDNDV---V-GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             ceEEEEEccCC--CCEEEEEEEeCCC---c-CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            99999998764  3579999999874   3 568999999999999988788899999764      268999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.71  E-value=1.2e-16  Score=138.96  Aligned_cols=115  Identities=26%  Similarity=0.332  Sum_probs=98.1

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~--  457 (548)
                      .|+|.+++.|.+.                                .+.|.|+|++|+||+.   .+.+||||++++.+  
T Consensus         2 ~G~l~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~   49 (124)
T cd08385           2 LGKLQFSLDYDFQ--------------------------------SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK   49 (124)
T ss_pred             ccEEEEEEEEeCC--------------------------------CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC
Confidence            5999999999864                                5789999999999986   35789999999853  


Q ss_pred             -eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          458 -DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       458 -~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                       ..++|++++++.||+|||+|.|.+..... ...|.|+|||++.   ++.+++||++.++|+++..+....+||+|.
T Consensus        50 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~---~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          50 KKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR---FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC---CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence             35699999999999999999999865322 3579999999974   678899999999999997777778999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=8.4e-17  Score=140.06  Aligned_cols=109  Identities=29%  Similarity=0.433  Sum_probs=88.9

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC---CCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~  333 (548)
                      ++...|.|.|+|++|++|+..+..+.+||||++++.+..  ...++|++++++.||+|||+|.|.+...   ....|.|+
T Consensus        11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~   90 (125)
T cd04031          11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT   90 (125)
T ss_pred             EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence            445568999999999999999988999999999997532  2346899999999999999999986432   35789999


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      |||++..+++++||++.+++++... .....|++|
T Consensus        91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L  124 (125)
T cd04031          91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL  124 (125)
T ss_pred             EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence            9999998899999999999998332 223455554

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.71  E-value=1.5e-16  Score=144.14  Aligned_cols=128  Identities=21%  Similarity=0.358  Sum_probs=100.5

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc---
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK---  456 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~---  456 (548)
                      +|+|.+++.|.|...+...                    .......|.|.|+|++|+||+..   +.+||||++++.   
T Consensus         1 ~G~l~~~l~y~~~~~~~~~--------------------~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~   60 (162)
T cd04020           1 RGELKVALKYVPPESEGAL--------------------KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDK   60 (162)
T ss_pred             CceEEEEEEecCccccccc--------------------cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCC
Confidence            5999999999997543211                    11223579999999999999863   579999999983   


Q ss_pred             --CeEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          457 --GDKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       457 --~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                        ...++|++++++.||.|||.|.|.+....  .+..|.|+|||++.   ++.+++||++.+++.++...+....||.+.
T Consensus        61 ~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~---~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~  137 (162)
T cd04020          61 SKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK---LSSNDFLGGVRLGLGTGKSYGQAVDWMDST  137 (162)
T ss_pred             CCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC---CCCCceEEEEEEeCCccccCCCccccccCC
Confidence              24579999999999999999999864321  23479999999985   677999999999999987665556777765


Q ss_pred             C
Q 008950          533 N  533 (548)
Q Consensus       533 ~  533 (548)
                      +
T Consensus       138 ~  138 (162)
T cd04020         138 G  138 (162)
T ss_pred             h
Confidence            4

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.70  E-value=3.5e-16  Score=139.11  Aligned_cols=125  Identities=23%  Similarity=0.233  Sum_probs=97.6

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccceeeeeeecCCCCCeeeceEEEEEecCC--------CCEEEEE
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--------SQILQLQ  333 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--------~~~L~v~  333 (548)
                      |.|.|....+.+|++.+..+.+||||++++  .+....+.||+++++|+||+|||+|.|.+....        ...|.++
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            444444444444778887889999999997  333445679999999999999999999996431        4579999


Q ss_pred             EEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950          334 VFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF  395 (548)
Q Consensus       334 v~d~d~~-~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  395 (548)
                      |||++.+ ++|++||++.++|+.+..+.....+++|...       .....|.|+++++....
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~p  139 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLREP  139 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecCC
Confidence            9999876 5799999999999999877666668887532       24577899999987643

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=2.1e-16  Score=137.77  Aligned_cols=115  Identities=32%  Similarity=0.509  Sum_probs=94.0

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC----
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV----  340 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~----  340 (548)
                      .|+|+|++|++|+..|..|.+||||++++++..   ++|++++++.||.|||+|.|.+..+ ...|.|+|||+|..    
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~   77 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR   77 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence            589999999999999988999999999997543   6899999999999999999998654 56899999999853    


Q ss_pred             -------CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEE
Q 008950          341 -------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL  390 (548)
Q Consensus       341 -------~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l  390 (548)
                             +.+++||++.+++.++....  ..|+.|.+..     .....+|+|.+++
T Consensus        78 ~~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~-----~~~~~~G~i~~~~  127 (127)
T cd04027          78 LKQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRT-----DKSAVSGAIRLHI  127 (127)
T ss_pred             cceeccccCCCcceEEEEEhHHccCCC--CeEEECccCC-----CCCcEeEEEEEEC
Confidence                   46899999999999886543  4566664321     2346799999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.70  E-value=4e-17  Score=144.06  Aligned_cols=128  Identities=22%  Similarity=0.389  Sum_probs=105.6

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC--CCCCcEEEEEEcC---
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE--NHNNPYAIILYKG---  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~--~~~dpyv~v~l~~---  457 (548)
                      .|+|++++.|.|.                                .+.|.|+|++|+||+..  +.+||||++++.+   
T Consensus         1 ~G~i~~sl~y~~~--------------------------------~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~   48 (137)
T cd08409           1 LGDIQISLTYNPT--------------------------------LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNK   48 (137)
T ss_pred             CcEEEEEEEECCC--------------------------------CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCE
Confidence            3899999999974                                46899999999999753  5689999999854   


Q ss_pred             --eEEEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       458 --~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                        ++++|++++++.||+|||.|.|.+...... ..|.++||+++.   .+.+++||++.++....-.+....+|+.+..+
T Consensus        49 ~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~---~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~  125 (137)
T cd08409          49 VVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG---VRKSKLLGRVVLGPFMYARGKELEHWNDMLSK  125 (137)
T ss_pred             EeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC---CCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence              356999999999999999999999754333 489999999985   67889999999997665555667899999888


Q ss_pred             CCeEEEEEEEEEeC
Q 008950          535 KRGVIHVDIRWKMI  548 (548)
Q Consensus       535 ~~G~i~l~~~~~~~  548 (548)
                      +...|.   +|+.|
T Consensus       126 p~~~i~---~WH~l  136 (137)
T cd08409         126 PKELIK---RWHAL  136 (137)
T ss_pred             CCCcee---EEEeC
Confidence            776665   88865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.70  E-value=2.3e-16  Score=135.21  Aligned_cols=113  Identities=42%  Similarity=0.633  Sum_probs=97.3

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR  345 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~  345 (548)
                      |+|+|++|++|+..+..+.+||||++.+++..  .++|+++.++.||.|||+|.|.+.+...+.+.|+|||++..+++++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~   78 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL   78 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence            57999999999999888899999999997643  3689999999999999999999976567889999999999889999


Q ss_pred             eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEE
Q 008950          346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIV  387 (548)
Q Consensus       346 lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~  387 (548)
                      ||++.+++.++..+.....+++|..       .++...|.|.
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~  113 (115)
T cd04040          79 LGSAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVF  113 (115)
T ss_pred             eEEEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEE
Confidence            9999999999998888888888843       2345566654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.70  E-value=1.2e-16  Score=142.44  Aligned_cols=105  Identities=36%  Similarity=0.550  Sum_probs=89.6

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCccc--------------------------ceeeeeeecCCCC
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--------------------------PWKKTTVKKKNLN  311 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~--------------------------~~~~T~v~~~t~n  311 (548)
                      ...++.+.|.|+|++|++|...|..|.+||||++.+.+...                          ..++|++++++.|
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            56778999999999999999999999999999999964311                          2368999999999


Q ss_pred             CeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 008950          312 PEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD  367 (548)
Q Consensus       312 P~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~  367 (548)
                      |.|||+|.|.+.+...+.|.|+|||++    |++||++.++++++... ....|++
T Consensus       102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-~~d~W~~  152 (153)
T cd08676         102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-GLDSWFK  152 (153)
T ss_pred             CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-CCCCeEe
Confidence            999999999998766789999999997    88999999999999833 3455554

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.70  E-value=5.9e-17  Score=142.10  Aligned_cols=108  Identities=25%  Similarity=0.275  Sum_probs=88.5

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v  334 (548)
                      +....+.|.|+|++|+||+..+..|.+||||++++.+.  +..++||++++++.||+|||+|.|.+..  .....|.|+|
T Consensus        10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V   89 (136)
T cd08406          10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV   89 (136)
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence            45566899999999999999998899999999999654  3335689999999999999999999864  3467899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      ||+|..+++++||++.++....  ++..+.|.++
T Consensus        90 ~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~m  121 (136)
T cd08406          90 AESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQM  121 (136)
T ss_pred             EeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHH
Confidence            9999999999999999977643  3334444443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.70  E-value=3.4e-16  Score=135.75  Aligned_cols=111  Identities=23%  Similarity=0.428  Sum_probs=95.6

Q ss_pred             EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950          430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK  506 (548)
Q Consensus       430 ~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d  506 (548)
                      .|+|+|++|++|+..   +.+||||++++++..++|++++++.||.|||+|.|.+... ....|.|+|||++.   .+.+
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~---~~~~   76 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL---VSKN   76 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC---CCCC
Confidence            378999999999763   4789999999999889999999999999999999999875 35689999999874   6778


Q ss_pred             cceEEEEEechhhhccceeceEEEeCCC---------CCeEEEEEEE
Q 008950          507 ESLGHVEINLTDVVHNGRINEKYHLINS---------KRGVIHVDIR  544 (548)
Q Consensus       507 ~~lG~~~i~L~~l~~~~~~~~w~~L~~~---------~~G~i~l~~~  544 (548)
                      ++||++.++|+++........||.|...         ..|.|++.++
T Consensus        77 ~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~  123 (123)
T cd04025          77 DFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR  123 (123)
T ss_pred             cEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence            9999999999999876667899999752         2688888763

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.69  E-value=2.5e-16  Score=136.84  Aligned_cols=114  Identities=23%  Similarity=0.459  Sum_probs=96.6

Q ss_pred             eEEEEEEeeeecCCCC----CCCCcEEEEEEcC--eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCcc
Q 008950          429 GLLSVLVQGAEDVEGE----NHNNPYAIILYKG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIR  502 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~----~~~dpyv~v~l~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~  502 (548)
                      |.|+|+|++|++|+..    +.+||||++++++  ..++|++++++.||.|||.|.|.+..  ..+.|.++|||++.   
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~---   76 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND---   76 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---
Confidence            7899999999999852    3689999999988  67899999999999999999999874  46789999999985   


Q ss_pred             CCCCcceEEEEEechhhhccceece-EEEeCC--CCCeEEEEEEEEEe
Q 008950          503 FWSKESLGHVEINLTDVVHNGRINE-KYHLIN--SKRGVIHVDIRWKM  547 (548)
Q Consensus       503 ~~~d~~lG~~~i~L~~l~~~~~~~~-w~~L~~--~~~G~i~l~~~~~~  547 (548)
                      .+.|++||++.++|.++........ ++.+..  ...|+|+++++|.|
T Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          77 KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence            5689999999999999998765543 444433  34899999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.69  E-value=4.8e-16  Score=135.60  Aligned_cols=111  Identities=23%  Similarity=0.466  Sum_probs=97.3

Q ss_pred             EeeeecCCC-CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEE
Q 008950          435 VQGAEDVEG-ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHV  512 (548)
Q Consensus       435 v~~a~~L~~-~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~  512 (548)
                      |.+|++|+. .+.+||||++++++.+++|++++++.||+|||.|.|.+.... ..+.|.++|||++.   .+.|++||++
T Consensus         2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~---~~~d~~iG~~   78 (127)
T cd08373           2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK---VGRNRLIGSA   78 (127)
T ss_pred             eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC---CCCCceEEEE
Confidence            678999987 567999999999999999999999999999999999997642 35689999999975   5678999999


Q ss_pred             EEechhhhccceeceEEEeCCC----CCeEEEEEEEEEeC
Q 008950          513 EINLTDVVHNGRINEKYHLINS----KRGVIHVDIRWKMI  548 (548)
Q Consensus       513 ~i~L~~l~~~~~~~~w~~L~~~----~~G~i~l~~~~~~~  548 (548)
                      .++++++..+.....|++|.+.    ..|+|+++++|.|.
T Consensus        79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~  118 (127)
T cd08373          79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP  118 (127)
T ss_pred             EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence            9999999988888899999744    26899999999874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.69  E-value=7.2e-17  Score=141.46  Aligned_cols=108  Identities=25%  Similarity=0.314  Sum_probs=88.8

Q ss_pred             ccCCceEEEEEEEEecCccccCC--CCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL  332 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v  332 (548)
                      +....|.|.|+|++|+||+..|.  .+.+||||++++.++  +..++||++++++.||+|||+|.|.+...  ....|.|
T Consensus        10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~   89 (138)
T cd08407          10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL   89 (138)
T ss_pred             EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence            44566899999999999999983  355999999999864  34467999999999999999999998642  3678999


Q ss_pred             EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       333 ~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      +|||+|.++++++||++.+++..  .++...+|.++
T Consensus        90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m  123 (138)
T cd08407          90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM  123 (138)
T ss_pred             EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence            99999999999999999999975  34444455544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.69  E-value=1.2e-16  Score=135.64  Aligned_cols=100  Identities=30%  Similarity=0.423  Sum_probs=85.6

Q ss_pred             EEEEEEEecCccccCC-CCCCCcEEEEEEcCcccceeeeeeecCCCCCee-eceEEEEEecC--CCCEEEEEEEEcCCCC
Q 008950          266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW-NENFKLVVKEP--ESQILQLQVFDWDKVG  341 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~-~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~--~~~~L~v~v~d~d~~~  341 (548)
                      |.|+|++|++|+..+. .|.+||||++++++.   .++|++++++.||.| ||+|.|.+...  ..+.|.|+|||++..+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~   77 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS   77 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence            6899999999999884 688999999999873   368999999999999 99999999753  2468999999999999


Q ss_pred             CCCeeEEEEEECcccCCC---CceEEEEec
Q 008950          342 GHDRLGMQLVPLKLLTPH---ETKEFTLDL  368 (548)
Q Consensus       342 ~dd~lG~~~i~l~~l~~~---~~~~~~l~l  368 (548)
                      +|++||++.++++++...   .....|++|
T Consensus        78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l  107 (110)
T cd08688          78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPI  107 (110)
T ss_pred             CCCceEEEEEeHHHhcccCCccccCCeEEc
Confidence            999999999999999873   234456665

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.69  E-value=2.9e-16  Score=134.19  Aligned_cols=102  Identities=25%  Similarity=0.297  Sum_probs=85.5

Q ss_pred             EEEEEEeeeecCCCC--CCCCcEEEEEEcC-------eEEEeeeccCCCCCccCceEEEEccCC--CCCCeEEEEEEEcc
Q 008950          430 LLSVLVQGAEDVEGE--NHNNPYAIILYKG-------DKKRTKMIRKTRDPAWNEEFQFMLDEP--PLHEKIHIEVMSKR  498 (548)
Q Consensus       430 ~L~V~v~~a~~L~~~--~~~dpyv~v~l~~-------~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~  498 (548)
                      .|+|+|++|++|+..  |.+||||++++.+       ++++|+++.++.||+|||+|+|.+...  .....|.++|+|++
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            378999999999874  6789999999842       235899999999999999999999753  12347999999987


Q ss_pred             CCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          499 TGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       499 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                      .   .+.+++||++.++|+++..++....|++|...
T Consensus        81 ~---~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          81 F---ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             c---cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            3   56789999999999999988888899999654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.69  E-value=1.4e-16  Score=138.34  Aligned_cols=103  Identities=36%  Similarity=0.562  Sum_probs=89.8

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeec-CCCCCeeeceEEEEEecC---CCCEEEEEEEEcCC
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK  339 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~d~  339 (548)
                      |.|.|+|++|++|+..+..+.+||||+++++++.   ++|++.+ ++.||.|||+|.|.+..+   ..+.|.|+|||++.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN   77 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence            6899999999999999888999999999998654   4777776 489999999999999875   25789999999999


Q ss_pred             CCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      .++|++||++.+++.++..++....|+.+.
T Consensus        78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~  107 (124)
T cd04049          78 FSDDDFIGEATIHLKGLFEEGVEPGTAELV  107 (124)
T ss_pred             CCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence            889999999999999998776666676663

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.69  E-value=1.5e-16  Score=138.52  Aligned_cols=115  Identities=22%  Similarity=0.347  Sum_probs=95.6

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeec-CCCCCeeeceEEEEEecCC----CCEEEEEEEEcCC
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK  339 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~  339 (548)
                      .|+|+|++|++|+..+..+.+||||++++++..  .++|++.. ++.||.|||.|.|.+.+..    ...|.|+|||++.
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~   78 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP   78 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence            379999999999999888999999999998722  25888864 6899999999999997653    6789999999998


Q ss_pred             CCCCCeeEEEEEECcccCCCCc-----eEEEEeccccccCCCCCCCccccEEEE
Q 008950          340 VGGHDRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVV  388 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~~~-----~~~~l~l~~~~~~~~~~~~~~~G~l~l  388 (548)
                      .++|++||++.+++.++..+..     +..|+++.+.       +++..|.|++
T Consensus        79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~  125 (125)
T cd04051          79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF  125 (125)
T ss_pred             CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence            8899999999999999987654     3567777532       3678888874

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.69  E-value=2.7e-16  Score=139.93  Aligned_cols=107  Identities=24%  Similarity=0.385  Sum_probs=91.8

Q ss_pred             EEEEEeeeecCCCC-----------------CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEE
Q 008950          431 LSVLVQGAEDVEGE-----------------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE  493 (548)
Q Consensus       431 L~V~v~~a~~L~~~-----------------~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~  493 (548)
                      +.|+|++|++|+..                 +.+||||++.+++++.+|++++++.||+|||+|.|.+..++..+.|.++
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~   81 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ   81 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence            78999999999863                 2589999999999999999999999999999999998665556799999


Q ss_pred             EEEccCCccCCCCcceEEEEEechhhhccce-------eceEEEeCCCCCeEEE
Q 008950          494 VMSKRTGIRFWSKESLGHVEINLTDVVHNGR-------INEKYHLINSKRGVIH  540 (548)
Q Consensus       494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~-------~~~w~~L~~~~~G~i~  540 (548)
                      |||++.   .++|++||++.+++.++...+.       ...|+.|.+++.+..+
T Consensus        82 v~D~d~---~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~~  132 (151)
T cd04018          82 IRDWDR---VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYSL  132 (151)
T ss_pred             EEECCC---CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccccc
Confidence            999985   5789999999999999977553       3689999988765443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.69  E-value=2.2e-16  Score=134.33  Aligned_cols=100  Identities=19%  Similarity=0.275  Sum_probs=82.1

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG  342 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~  342 (548)
                      ++.|.|+|++|++|+..+   ..||||++++++++   .+|++.++ .||.|||.|.|.+.+.. ..|.|+|||+|.. +
T Consensus         1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~   71 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-W   71 (127)
T ss_pred             CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-C
Confidence            378999999999997654   56999999998754   58888877 59999999999997644 4599999999865 8


Q ss_pred             CCeeEEEEEECcccCCCCce--EEEEecccc
Q 008950          343 HDRLGMQLVPLKLLTPHETK--EFTLDLLKH  371 (548)
Q Consensus       343 dd~lG~~~i~l~~l~~~~~~--~~~l~l~~~  371 (548)
                      ||+||++.++|+++...+..  ..|++|...
T Consensus        72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~  102 (127)
T cd08394          72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE  102 (127)
T ss_pred             CCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence            99999999999999865433  567776543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.69  E-value=1.7e-16  Score=143.86  Aligned_cols=110  Identities=34%  Similarity=0.326  Sum_probs=92.4

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEec---CCCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~  333 (548)
                      ...+.|.|.|+|++|+||+..+..|.+||||++++.+.  ....++|++++++.||.|||+|.|.+..   .....|.|+
T Consensus        22 ~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~  101 (162)
T cd04020          22 KKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELT  101 (162)
T ss_pred             cCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence            34478999999999999999998899999999998542  2345799999999999999999998532   234689999


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      |||++.+++|++||++.++++++........|+++
T Consensus       102 V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~  136 (162)
T cd04020         102 VWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS  136 (162)
T ss_pred             EEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence            99999999999999999999999866666666655

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.69  E-value=7.9e-16  Score=132.66  Aligned_cols=110  Identities=25%  Similarity=0.443  Sum_probs=95.6

Q ss_pred             eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC
Q 008950          429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS  505 (548)
Q Consensus       429 g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~  505 (548)
                      |.|.|+|++|+||+.   .+.+||||++++++..++|++++++.||.|||+|.|.+.+.  .+.+.++|||++.   .+.
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~--~~~l~~~v~d~~~---~~~   75 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI--HDVLEVTVYDEDK---DKK   75 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc--CCEEEEEEEECCC---CCC
Confidence            679999999999986   35789999999999889999999999999999999998753  4689999999874   568


Q ss_pred             CcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 008950          506 KESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDIRW  545 (548)
Q Consensus       506 d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  545 (548)
                      +++||++.+++.++..+.  .+||+|.+.     ..|+|.+++++
T Consensus        76 ~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          76 PEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             CceeeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence            899999999999986544  589999754     38999999986

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.69  E-value=1.5e-16  Score=137.88  Aligned_cols=120  Identities=29%  Similarity=0.420  Sum_probs=94.6

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD  344 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd  344 (548)
                      +|+|+|++|++|+..|..|.+||||++++++... ..+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd   79 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD   79 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence            4799999999999999999999999999987653 357888889999999999999987666789999999999999999


Q ss_pred             eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       345 ~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      +||++.+++++..-. .++++.-+.        .+....|.++.+..+.|
T Consensus        80 ~iG~~~i~l~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~  120 (124)
T cd04037          80 LIGETVIDLEDRFFS-KHRATCGLP--------PTYEESGPNQWRDSLKP  120 (124)
T ss_pred             eeEEEEEeecccccc-hHHHhccCC--------CcccccCceecCcccCc
Confidence            999999999977642 222222221        12235677766665554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.68  E-value=3.2e-16  Score=132.03  Aligned_cols=92  Identities=18%  Similarity=0.318  Sum_probs=81.3

Q ss_pred             eEEEEEEeeeecCCCC-------CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCc
Q 008950          429 GLLSVLVQGAEDVEGE-------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGI  501 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~-------~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~  501 (548)
                      |+|.|+|.+|++|+..       +.+||||+++++++.+||++++++.||+|||.|.|.+.+......|.++|||++.  
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~--   78 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK--   78 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC--
Confidence            6899999999999852       2489999999998889999999999999999999998765444589999999985  


Q ss_pred             cCCCCcceEEEEEechhhhccc
Q 008950          502 RFWSKESLGHVEINLTDVVHNG  523 (548)
Q Consensus       502 ~~~~d~~lG~~~i~L~~l~~~~  523 (548)
                       .+.|++||++.++|++++.+.
T Consensus        79 -~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          79 -FSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             -CCCCcceEEEEEEHHHHHhhC
Confidence             678999999999999998754

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.68  E-value=2.7e-16  Score=139.30  Aligned_cols=93  Identities=45%  Similarity=0.708  Sum_probs=85.1

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG  342 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~  342 (548)
                      .|.|+|+|++|+||+..+. +.+||||+++++++.   ++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~   75 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK   75 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence            3899999999999999887 899999999998754   6899999999999999999999876 6789999999999999


Q ss_pred             CCeeEEEEEECcccCCCC
Q 008950          343 HDRLGMQLVPLKLLTPHE  360 (548)
Q Consensus       343 dd~lG~~~i~l~~l~~~~  360 (548)
                      |++||++.+++.++....
T Consensus        76 dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          76 DDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             CCEEEEEEEEHHHhhhhh
Confidence            999999999999988653

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.68  E-value=4.5e-16  Score=135.04  Aligned_cols=113  Identities=25%  Similarity=0.433  Sum_probs=95.1

Q ss_pred             cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC----CCCCCcEEEEEEcC--
Q 008950          384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG--  457 (548)
Q Consensus       384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~----~~~~dpyv~v~l~~--  457 (548)
                      |+|++++.|.+.                                .+.|.|+|.+|+||+.    .+.+||||++++.+  
T Consensus         1 G~i~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~   48 (123)
T cd08521           1 GEIEFSLSYNYK--------------------------------TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDK   48 (123)
T ss_pred             CeEEEEEEEeCC--------------------------------CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCC
Confidence            889999999753                                5789999999999975    35799999999842  


Q ss_pred             ---eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950          458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL  531 (548)
Q Consensus       458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L  531 (548)
                         .+++|++++++.||+|||+|.|.+..... ...|.++|||++.   .+.+++||++.++|+++..+.....||+|
T Consensus        49 ~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~---~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          49 SKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR---FGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             CcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC---CcCCceeeEEEEecccccccCCCccEEEC
Confidence               35699999999999999999999875322 3479999999874   67889999999999999776677899987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.68  E-value=1.5e-16  Score=140.56  Aligned_cols=126  Identities=24%  Similarity=0.452  Sum_probs=104.4

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~--  457 (548)
                      .|+|.+++.|.|.                                .|.|.|+|++|++|+.   .+.+||||++++.+  
T Consensus         1 ~G~l~~~l~y~~~--------------------------------~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~   48 (136)
T cd08402           1 LGDICFSLRYVPT--------------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG   48 (136)
T ss_pred             CcEEEEEeEEcCC--------------------------------CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECC
Confidence            4899999999974                                5789999999999986   35799999999953  


Q ss_pred             ---eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950          458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN  533 (548)
Q Consensus       458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~  533 (548)
                         ..++|++++++.||.|||+|.|.+..... ...|.++|||++.   ++.|++||++.+++...  +....+|+++..
T Consensus        49 ~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~---~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~  123 (136)
T cd08402          49 KRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR---IGKNDPIGKVVLGCNAT--GAELRHWSDMLA  123 (136)
T ss_pred             cccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC---CCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence               34689999999999999999999865322 2379999999985   67899999999999763  445689999998


Q ss_pred             CCCeEEEEEEEEEeC
Q 008950          534 SKRGVIHVDIRWKMI  548 (548)
Q Consensus       534 ~~~G~i~l~~~~~~~  548 (548)
                      ++...|.   +|+.|
T Consensus       124 ~~~~~~~---~wh~~  135 (136)
T cd08402         124 SPRRPIA---QWHTL  135 (136)
T ss_pred             CCCCeee---EEEEc
Confidence            8888877   88764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.68  E-value=1.2e-15  Score=133.65  Aligned_cols=118  Identities=24%  Similarity=0.374  Sum_probs=94.1

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCccc----------ceeeeeeecCCCCCee-eceEEEEEecCCCCEEEEE
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----------PWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQ  333 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~----------~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~  333 (548)
                      +..|++++|+||+ ++..|++||||++++.+...          +.++|+++++++||+| ||+|.|.+.  .++.|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence            4678999999998 67789999999999965432          2579999999999999 999999985  35789999


Q ss_pred             EEEcCCCCC---CCeeEEEEEECcccCCCC---ceEEEEeccccccCCCCCCCccccEEEEEE
Q 008950          334 VFDWDKVGG---HDRLGMQLVPLKLLTPHE---TKEFTLDLLKHTNISDPKDMKQRGKIVVEL  390 (548)
Q Consensus       334 v~d~d~~~~---dd~lG~~~i~l~~l~~~~---~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l  390 (548)
                      |||++..++   +++||++.++++++..+.   ...+++++.+..     .....+|+|.+.+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence            999875443   799999999999998653   344566664432     2467889998875

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.68  E-value=5e-16  Score=134.62  Aligned_cols=114  Identities=19%  Similarity=0.286  Sum_probs=95.5

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~--  457 (548)
                      .|+|++++.|.+.                                .+.|.|+|++|+||+.   .+..||||++.+..  
T Consensus         2 ~G~l~~sl~Y~~~--------------------------------~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~   49 (124)
T cd08389           2 CGDLDVAFEYDPS--------------------------------ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK   49 (124)
T ss_pred             CEEEEEEEEECCC--------------------------------CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC
Confidence            5999999999974                                5789999999999986   35789999988733  


Q ss_pred             -eEEEeeeccCCCCCccCceEEEE-ccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          458 -DKKRTKMIRKTRDPAWNEEFQFM-LDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       458 -~~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                       ++++|+++++ .||+|||+|.|. +.... .+..|.++|+|++.   ++++++||++.++|+++..++....||+|+
T Consensus        50 ~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~---~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          50 KQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER---MRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             cceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC---cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence             4569999888 999999999998 54321 23479999999985   678999999999999997777778999986

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.68  E-value=3.2e-16  Score=134.97  Aligned_cols=102  Identities=27%  Similarity=0.466  Sum_probs=89.0

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH  343 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d  343 (548)
                      |+|+|+|++|++|+..+..|.+||||++++++..  .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d   77 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD   77 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence            7899999999999999988999999999997643  36899999999999999999988664 57899999999999999


Q ss_pred             CeeEEEEEECcccCCCCceEEEEecc
Q 008950          344 DRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       344 d~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      ++||++.+++.++..+ ....|+.+.
T Consensus        78 ~~IG~~~~~l~~l~~~-~~~~~~~~~  102 (120)
T cd04045          78 RSLGSVEINVSDLIKK-NEDGKYVEY  102 (120)
T ss_pred             CeeeEEEEeHHHhhCC-CCCceEEec
Confidence            9999999999999877 445555554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.68  E-value=3.9e-16  Score=132.49  Aligned_cols=101  Identities=24%  Similarity=0.499  Sum_probs=87.4

Q ss_pred             EEEEEeeeecCCC----CCCCCcEEEEEEcCeEEEeeeccCCCCCcc-CceEEEEccCCCC-CCeEEEEEEEccCCccCC
Q 008950          431 LSVLVQGAEDVEG----ENHNNPYAIILYKGDKKRTKMIRKTRDPAW-NEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       431 L~V~v~~a~~L~~----~~~~dpyv~v~l~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~  504 (548)
                      |.|+|++|++|+.    .+.+||||++++++..+||++++++.||.| ||.|.|.+..... ++.|.|+|||++.   ++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~---~~   77 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT---YS   77 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC---CC
Confidence            5799999999975    346899999999998899999999999999 9999999976432 3589999999985   67


Q ss_pred             CCcceEEEEEechhhhc---cceeceEEEeCCC
Q 008950          505 SKESLGHVEINLTDVVH---NGRINEKYHLINS  534 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~---~~~~~~w~~L~~~  534 (548)
                      .+++||++.+++.++..   +...+.||+|.++
T Consensus        78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~~  110 (110)
T cd08688          78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYDT  110 (110)
T ss_pred             CCCceEEEEEeHHHhcccCCccccCCeEEcccC
Confidence            88999999999999988   3457899999863

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.67  E-value=4.2e-16  Score=138.69  Aligned_cols=93  Identities=35%  Similarity=0.600  Sum_probs=81.6

Q ss_pred             EEEEEEEEecCccccCCCC--------------CCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC-CCE
Q 008950          265 ILHVKVVRASKLLKKDFLG--------------TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQI  329 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g--------------~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~  329 (548)
                      .|.|+|++|++|+.+|..+              .+||||++.+++.+   .+|++++++.||+|||+|.|.+..+. .+.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~   77 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER   77 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence            3789999999999988543              68999999999865   48999999999999999999986443 578


Q ss_pred             EEEEEEEcCCCCCCCeeEEEEEECcccCCCC
Q 008950          330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE  360 (548)
Q Consensus       330 L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~  360 (548)
                      |.|+|||+|..++|++||++.++++++...+
T Consensus        78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~  108 (151)
T cd04018          78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG  108 (151)
T ss_pred             EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence            9999999999999999999999999987654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.67  E-value=9.5e-16  Score=133.41  Aligned_cols=115  Identities=22%  Similarity=0.294  Sum_probs=96.4

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK---  456 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~---  456 (548)
                      .|+|++++.|.+.                                .+.|.|+|++|+||+.   .+.+||||++++.   
T Consensus         2 ~G~l~~~l~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~   49 (125)
T cd08386           2 LGRIQFSVSYDFQ--------------------------------ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK   49 (125)
T ss_pred             ccEEEEEEEECCC--------------------------------CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC
Confidence            5999999999763                                5689999999999976   3579999999993   


Q ss_pred             CeEEEeeeccCCCCCccCceEEEEccCC--CCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          457 GDKKRTKMIRKTRDPAWNEEFQFMLDEP--PLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       457 ~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                      +..++|++++++.||.|||+|.|.+...  .....|.++|||++.   ++.+++||++.++++++........||.|.
T Consensus        50 ~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~---~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          50 KHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR---FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             CcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC---CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            3557999999999999999999975322  123479999999985   677899999999999998777778999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.67  E-value=2.4e-16  Score=139.20  Aligned_cols=126  Identities=23%  Similarity=0.383  Sum_probs=101.2

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~--  457 (548)
                      +|+|.++++|.+.                                .+.|.|+|++|+||+.   .+.+||||++++.+  
T Consensus         1 ~G~l~~~l~y~~~--------------------------------~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~   48 (136)
T cd08404           1 RGELLLSLCYQPT--------------------------------TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGK   48 (136)
T ss_pred             CCeEEEEEEEeCC--------------------------------CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCC
Confidence            5999999999753                                4679999999999986   35789999999843  


Q ss_pred             ---eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950          458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN  533 (548)
Q Consensus       458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~  533 (548)
                         .+++|++++++.||.|||+|.|.+..... ...|.|+|||++.   ++.+++||++.+++..  ......+|+.|.+
T Consensus        49 ~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~---~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~  123 (136)
T cd08404          49 KRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR---VTKNEVIGRLVLGPKA--SGSGGHHWKEVCN  123 (136)
T ss_pred             ceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC---CCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence               24589999999999999999999875322 2468899999985   6789999999999998  3445688999987


Q ss_pred             CCCeEEEEEEEEEeC
Q 008950          534 SKRGVIHVDIRWKMI  548 (548)
Q Consensus       534 ~~~G~i~l~~~~~~~  548 (548)
                      .+.-.|.   +|+.+
T Consensus       124 ~~~~~i~---~Wh~l  135 (136)
T cd08404         124 PPRRQIA---EWHML  135 (136)
T ss_pred             CCCCeee---EEEec
Confidence            6544444   77754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.67  E-value=2.6e-16  Score=137.56  Aligned_cols=91  Identities=27%  Similarity=0.565  Sum_probs=83.5

Q ss_pred             ceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      .|.|+|.|.+|.||..+   +.+||||.+.+++++.||+++++++||+|||.|+|.+.++  ...|.++|||+|.   ++
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~---fs   79 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT---FS   79 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC---CC
Confidence            69999999999999753   6799999999999999999999999999999999999996  4689999999996   89


Q ss_pred             CCcceEEEEEechhhhccc
Q 008950          505 SKESLGHVEINLTDVVHNG  523 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~~  523 (548)
                      .|++||.++|+|..++...
T Consensus        80 ~dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   80 SDDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             cccccceeeeccHHHHHHh
Confidence            9999999999999887643

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.67  E-value=4.5e-16  Score=136.79  Aligned_cols=101  Identities=35%  Similarity=0.511  Sum_probs=87.2

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc----cceeeeeeecCCCCCeeeceEEEEEecC----CCCEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL  330 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L  330 (548)
                      .....+.|+|+|++|++|+..+..|.+||||++++.+..    ...++|+++++|.||+|||+|.|.+...    ....|
T Consensus        11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l   90 (133)
T cd04009          11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL   90 (133)
T ss_pred             EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence            344568899999999999999888999999999997532    2357999999999999999999998642    35689


Q ss_pred             EEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 008950          331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPH  359 (548)
Q Consensus       331 ~v~v~d~d~~~~dd~lG~~~i~l~~l~~~  359 (548)
                      .|+|||++..++|++||++.++|+++...
T Consensus        91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          91 LFTVKDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             EEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence            99999999999999999999999999854

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.67  E-value=4e-16  Score=138.58  Aligned_cols=100  Identities=28%  Similarity=0.356  Sum_probs=84.3

Q ss_pred             EEEEEeeeecCCC-CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccC-----------C--C-CCCeE
Q 008950          431 LSVLVQGAEDVEG-ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDE-----------P--P-LHEKI  490 (548)
Q Consensus       431 L~V~v~~a~~L~~-~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~-----------~--~-~~~~l  490 (548)
                      |.|+|++|+||+. .+.+||||++++.+     .+++|++++++.||+|||+|.|.+..           +  . ....|
T Consensus         2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L   81 (148)
T cd04010           2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLEL   81 (148)
T ss_pred             EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEE
Confidence            7899999999987 45799999999976     45799999999999999999999951           1  1 12478


Q ss_pred             EEEEEEccCCccCCCCcceEEEEEechhhhcc-ceeceEEEeCC
Q 008950          491 HIEVMSKRTGIRFWSKESLGHVEINLTDVVHN-GRINEKYHLIN  533 (548)
Q Consensus       491 ~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~w~~L~~  533 (548)
                      .|+|||++.   .+.|++||++.|+|.++... .....||+|..
T Consensus        82 ~i~V~d~~~---~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~  122 (148)
T cd04010          82 RVDLWHASM---GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP  122 (148)
T ss_pred             EEEEEcCCC---CCCCceeEEEEEecccccccCCcCcceeecCC
Confidence            999999975   56899999999999999876 56689999965

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.67  E-value=2.1e-16  Score=139.26  Aligned_cols=125  Identities=26%  Similarity=0.458  Sum_probs=105.7

Q ss_pred             cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 008950          384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD--  458 (548)
Q Consensus       384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~--  458 (548)
                      |+|++.++|.+.                                .+.|.|+|++|+||+.   .+.+||||++++.+.  
T Consensus         1 G~i~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~   48 (134)
T cd00276           1 GELLLSLSYLPT--------------------------------AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK   48 (134)
T ss_pred             CeEEEEEEeeCC--------------------------------CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe
Confidence            789999999863                                4789999999999986   357999999999653  


Q ss_pred             ---EEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          459 ---KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       459 ---~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                         .++|++++++.||.|||+|.|.+..... ...|.|+|||.+.   ...+++||.+.+++++  .+....+||+|.++
T Consensus        49 ~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~---~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~  123 (134)
T cd00276          49 KLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS---VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS  123 (134)
T ss_pred             EeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC---CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence               4599999999999999999999876421 4589999999985   5678999999999999  55567899999998


Q ss_pred             CCeEEEEEEEEEeC
Q 008950          535 KRGVIHVDIRWKMI  548 (548)
Q Consensus       535 ~~G~i~l~~~~~~~  548 (548)
                      ++..|.   +|++|
T Consensus       124 ~~~~~~---~wh~~  134 (134)
T cd00276         124 PRKPIA---RWHKL  134 (134)
T ss_pred             CCCceE---EeeeC
Confidence            888777   88875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.67  E-value=1e-15  Score=133.36  Aligned_cols=115  Identities=22%  Similarity=0.358  Sum_probs=93.4

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---C-CCCCcEEEEEEcC-
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKG-  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~-~~~dpyv~v~l~~-  457 (548)
                      .|+|.+++.|.+.                                .+.|+|+|++|+||+.   . +.+||||++++.. 
T Consensus         2 ~G~l~~~l~y~~~--------------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~   49 (128)
T cd08388           2 LGTLFFSLRYNSE--------------------------------KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE   49 (128)
T ss_pred             CeEEEEEEEEECC--------------------------------CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC
Confidence            6999999999863                                5789999999999986   2 5789999999853 


Q ss_pred             --eEEEeeeccCCCCCccCceEEEE-ccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhcc--ceeceEEEe
Q 008950          458 --DKKRTKMIRKTRDPAWNEEFQFM-LDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN--GRINEKYHL  531 (548)
Q Consensus       458 --~~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~--~~~~~w~~L  531 (548)
                        +++||++++++.||+|||+|.|. +.... .+..|.++|||++.   +++|++||++.++|+++...  +....|-+|
T Consensus        50 ~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~---~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~  126 (128)
T cd08388          50 KEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR---YSRDDVIGEVVCPLAGADLLNEGELLVSREI  126 (128)
T ss_pred             cCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC---CCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence              34699999999999999999994 33211 22479999999874   67899999999999999544  566778776


Q ss_pred             C
Q 008950          532 I  532 (548)
Q Consensus       532 ~  532 (548)
                      +
T Consensus       127 ~  127 (128)
T cd08388         127 Q  127 (128)
T ss_pred             c
Confidence            5

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>PLN03008 Phospholipase D delta

Probab=99.66  E-value=7.9e-16  Score=165.54  Aligned_cols=130  Identities=28%  Similarity=0.468  Sum_probs=109.5

Q ss_pred             CceEEEEEEEEecCccccCC------------------------------------------CCCCCcEEEEEEcCcccc
Q 008950          262 PVGILHVKVVRASKLLKKDF------------------------------------------LGTSDPYVKLSLTGEKLP  299 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~------------------------------------------~g~~dpyv~v~l~~~~~~  299 (548)
                      -.|.|.++|.+|++|+.+|.                                          .+++||||+|.+++++. 
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv-   90 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL-   90 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce-
Confidence            35899999999999885321                                          24679999999987553 


Q ss_pred             eeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCC
Q 008950          300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD  379 (548)
Q Consensus       300 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~  379 (548)
                       .||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+|++++..++....|+++.+...    +.
T Consensus        91 -~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp  163 (868)
T PLN03008         91 -ARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP  163 (868)
T ss_pred             -eeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence             58999999999999999999998854 58999999999986 5899999999999999999999999976532    23


Q ss_pred             CccccEEEEEEEEEecccCc
Q 008950          380 MKQRGKIVVELTYVPFKEDS  399 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~  399 (548)
                      .+..|+|+++++|.|...+.
T Consensus       164 ~k~~~kl~v~lqf~pv~~~~  183 (868)
T PLN03008        164 PKAETAIFIDMKFTPFDQIH  183 (868)
T ss_pred             CCCCcEEEEEEEEEEccccc
Confidence            45678999999999997753

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.66  E-value=3e-16  Score=138.10  Aligned_cols=109  Identities=34%  Similarity=0.402  Sum_probs=90.3

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v  334 (548)
                      +....|.|.|+|++|+||+..|..|.+||||++++.+..  ...++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus         8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V   87 (133)
T cd08384           8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV   87 (133)
T ss_pred             EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence            445679999999999999999988999999999997532  3357999999999999999999998643  356899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      ||++..++|++||++.+++...  ++....|+++.
T Consensus        88 ~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l  120 (133)
T cd08384          88 WDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCL  120 (133)
T ss_pred             EeCCCCCCccEEEEEEEecCCC--CchHHHHHHHH
Confidence            9999988999999999999863  33444555553

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.66  E-value=1.7e-15  Score=130.91  Aligned_cols=109  Identities=20%  Similarity=0.405  Sum_probs=92.5

Q ss_pred             EEEEEeeeecCCC---CCCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950          431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK  506 (548)
Q Consensus       431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d  506 (548)
                      |.|+|++|++|+.   .+.+||||++.++++. .+|++++++.||.|||.|.|.+...  .+.|.++|||++.   .+.|
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~---~~~d   76 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDT---LSRD   76 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCC---CCCC
Confidence            7899999999975   3578999999998765 5999999999999999999998653  3689999999984   6789


Q ss_pred             cceEEEEEechhhhccc-eeceEEEeCCCC-----CeEEEEEEE
Q 008950          507 ESLGHVEINLTDVVHNG-RINEKYHLINSK-----RGVIHVDIR  544 (548)
Q Consensus       507 ~~lG~~~i~L~~l~~~~-~~~~w~~L~~~~-----~G~i~l~~~  544 (548)
                      ++||++.++++++.... ..+.|++|.+..     .|+|+|+++
T Consensus        77 ~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          77 DVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             CEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            99999999999887643 468999997632     799998864

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.66  E-value=1.3e-15  Score=133.68  Aligned_cols=107  Identities=25%  Similarity=0.454  Sum_probs=92.0

Q ss_pred             eEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC
Q 008950          429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG  500 (548)
Q Consensus       429 g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~  500 (548)
                      +.|.|+|++|++|+.   .+..||||++.+.+     ..++|++++++.||.|||+|.|.+........|.++|||++. 
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~-   91 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR-   91 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC-
Confidence            679999999999985   35799999999963     467999999999999999999998765345689999999874 


Q ss_pred             ccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEE
Q 008950          501 IRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVI  539 (548)
Q Consensus       501 ~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i  539 (548)
                        .+.+++||++.++|+++... ....||+|.+.+.|+.
T Consensus        92 --~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~  127 (131)
T cd04026          92 --TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY  127 (131)
T ss_pred             --CCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence              56889999999999999865 5678999999888864

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.66  E-value=3.1e-16  Score=183.46  Aligned_cols=117  Identities=29%  Similarity=0.604  Sum_probs=107.2

Q ss_pred             CceEEEEEEeeeecCCCC-CCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          427 GAGLLSVLVQGAEDVEGE-NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~~-~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      -.|.|.|+|++|+||.+. +.+||||++.++++ ++||++++++.||+|||.|+|.+.+++.++.++++|||++.   + 
T Consensus      1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~---f- 2053 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT---F- 2053 (2102)
T ss_pred             CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc---c-
Confidence            468999999999999975 78999999999965 77999999999999999999999998777889999999984   4 


Q ss_pred             CCcceEEEEEechhhhccceeceEEEeCC--CCCeE---EEEEEEEEe
Q 008950          505 SKESLGHVEINLTDVVHNGRINEKYHLIN--SKRGV---IHVDIRWKM  547 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~---i~l~~~~~~  547 (548)
                      +++.||+++|++.++..++.+++||+|.+  ++.|+   |+++++|++
T Consensus      2054 ~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2054 GKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             CCCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence            56699999999999999999999999997  57899   999999986

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.66  E-value=2.5e-16  Score=138.82  Aligned_cols=126  Identities=21%  Similarity=0.341  Sum_probs=102.0

Q ss_pred             cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 008950          384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG---  457 (548)
Q Consensus       384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~---  457 (548)
                      |+|.+++.|.+.                                .+.|.|+|++|+||+.   .+.+||||++++..   
T Consensus         2 ~ei~~sL~Y~~~--------------------------------~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~   49 (138)
T cd08408           2 PELLLGLEYNAL--------------------------------TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDG   49 (138)
T ss_pred             CeEEEEeEEcCC--------------------------------CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCC
Confidence            788999998864                                5789999999999986   35789999999953   


Q ss_pred             ---eEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950          458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN  533 (548)
Q Consensus       458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~  533 (548)
                         .++||++++++.||+|||+|.|.+.... .+..|.|+|||.+.   ++++++||++.+++...-. ....+|+.+..
T Consensus        50 ~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~---~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~  125 (138)
T cd08408          50 QEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK---MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE  125 (138)
T ss_pred             cceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC---CCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence               2459999999999999999999997532 23489999999985   6789999999999875432 23468999988


Q ss_pred             CCCeEEEEEEEEEeC
Q 008950          534 SKRGVIHVDIRWKMI  548 (548)
Q Consensus       534 ~~~G~i~l~~~~~~~  548 (548)
                      +++-.|.   +|+++
T Consensus       126 ~~~~~v~---~WH~l  137 (138)
T cd08408         126 SKGQQVC---RWHTL  137 (138)
T ss_pred             CCCCEEe---Eeeec
Confidence            7776666   88875

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.66  E-value=9.3e-16  Score=130.43  Aligned_cols=102  Identities=24%  Similarity=0.303  Sum_probs=88.5

Q ss_pred             ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCC---CCeEEEEEEEccCCccCC
Q 008950          428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL---HEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~---~~~l~v~V~d~~~~~~~~  504 (548)
                      ...|+|+|++|++|. .+.+||||++++++++++|++++++.||.|||.|.|.+..+..   +..|.++|||++.   ++
T Consensus         3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~---~~   78 (111)
T cd04011           3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS---LR   78 (111)
T ss_pred             cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc---cc
Confidence            467899999999999 5789999999999999999999999999999999999865421   3579999999875   67


Q ss_pred             CCcceEEEEEechhhhcc---ceeceEEEeCC
Q 008950          505 SKESLGHVEINLTDVVHN---GRINEKYHLIN  533 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~---~~~~~w~~L~~  533 (548)
                      +|++||++.++|+++...   ....+||+|.+
T Consensus        79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            799999999999999765   34688999975

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.65  E-value=8.9e-16  Score=135.30  Aligned_cols=106  Identities=30%  Similarity=0.399  Sum_probs=90.7

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCc-ccceeeeeeecCCCCCeeeceEEEEEecC---------------CCCE
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQI  329 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------------~~~~  329 (548)
                      |+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 7789999999999841 12346999999999999999999998765               4578


Q ss_pred             EEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccc
Q 008950          330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT  372 (548)
Q Consensus       330 L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~  372 (548)
                      |.|+|||++..+++++||++.+++.++........|++|.+..
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            9999999998889999999999999998776777888876543

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.65  E-value=9e-16  Score=130.51  Aligned_cols=98  Identities=28%  Similarity=0.362  Sum_probs=83.6

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC----CCEEEEEEEEcCC
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK  339 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~  339 (548)
                      -.|+|+|++|++|+    .|.+||||++++++++   ++|++++++.||.|||+|.|.+..+.    ...|.|+|||++.
T Consensus         4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~   76 (111)
T cd04011           4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS   76 (111)
T ss_pred             EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence            46899999999998    4789999999999764   58999999999999999999986432    4689999999999


Q ss_pred             CCCCCeeEEEEEECcccCCCCce---EEEEec
Q 008950          340 VGGHDRLGMQLVPLKLLTPHETK---EFTLDL  368 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~~~~---~~~l~l  368 (548)
                      .++|++||++.++++++..+..+   ..|++|
T Consensus        77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L  108 (111)
T cd04011          77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL  108 (111)
T ss_pred             cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence            88999999999999999876443   346655

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.65  E-value=3.2e-16  Score=138.45  Aligned_cols=126  Identities=21%  Similarity=0.441  Sum_probs=102.0

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc--C
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--G  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~--~  457 (548)
                      .|+|.++++|.+.                                .+.|.|+|++|+||+.   .+.+||||++++.  +
T Consensus         1 ~G~l~~sl~y~~~--------------------------------~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~   48 (136)
T cd08405           1 RGELLLSLCYNPT--------------------------------ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKD   48 (136)
T ss_pred             CcEEEEEEEEcCC--------------------------------CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCC
Confidence            4999999999974                                5789999999999975   3579999999983  2


Q ss_pred             ---eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950          458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN  533 (548)
Q Consensus       458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~  533 (548)
                         .+++|++++++.||.|||+|.|.+..... +..|.|+|||++.   ++.+++||++.+++.+.  +...++|+++..
T Consensus        49 ~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~---~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~  123 (136)
T cd08405          49 KRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR---LSRNDLIGKIYLGWKSG--GLELKHWKDMLS  123 (136)
T ss_pred             CccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC---CCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence               24589999999999999999999864222 3479999999984   67889999999999876  444578998887


Q ss_pred             CCCeEEEEEEEEEeC
Q 008950          534 SKRGVIHVDIRWKMI  548 (548)
Q Consensus       534 ~~~G~i~l~~~~~~~  548 (548)
                      .+...|.   +|+.+
T Consensus       124 ~~~~~~~---~wh~l  135 (136)
T cd08405         124 KPRQPVA---QWHRL  135 (136)
T ss_pred             CCCCchh---EEEec
Confidence            7666665   67643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.65  E-value=4.5e-16  Score=137.47  Aligned_cols=98  Identities=32%  Similarity=0.448  Sum_probs=84.7

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC--cccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v  334 (548)
                      +....|.|.|+|++|+||+..+..|.+||||++++.+  .....++|++++++.||.|||+|.|.+..  .....|.|+|
T Consensus        10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v   89 (136)
T cd08405          10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence            4556799999999999999999889999999999843  33345689999999999999999999753  2356899999


Q ss_pred             EEcCCCCCCCeeEEEEEECccc
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLL  356 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l  356 (548)
                      ||++..++|++||++.+++.+.
T Consensus        90 ~d~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          90 MDKDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             EECCCCCCCcEeEEEEECCccC
Confidence            9999999999999999999886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.65  E-value=1.8e-15  Score=133.20  Aligned_cols=111  Identities=26%  Similarity=0.455  Sum_probs=93.8

Q ss_pred             EEEEEEeeeecCCCC---CCCCcEEEEEEcCe-------EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950          430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGD-------KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       430 ~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~-------~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~  499 (548)
                      .|+|+|++|++|+..   +.+||||++++.+.       .++|++++++.||.|||+|.|.+...  ...|.++|||++.
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~   78 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR   78 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence            378999999999863   57999999999765       46999999999999999999998653  4679999999885


Q ss_pred             CccCCCCcceEEEEEechhhhccce------eceEEEeCCC-----CCeEEEEEEEE
Q 008950          500 GIRFWSKESLGHVEINLTDVVHNGR------INEKYHLINS-----KRGVIHVDIRW  545 (548)
Q Consensus       500 ~~~~~~d~~lG~~~i~L~~l~~~~~------~~~w~~L~~~-----~~G~i~l~~~~  545 (548)
                         ++.+++||++.++++++.....      ..+||+|.+.     ..|+|++++.|
T Consensus        79 ---~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          79 ---LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             ---CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence               6789999999999999986532      3589999843     38999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.65  E-value=9.1e-16  Score=132.50  Aligned_cols=109  Identities=18%  Similarity=0.199  Sum_probs=86.4

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC--cccceeeeeeecCCC-CCeeeceEEEEEecCC-CCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNL-NPEWNENFKLVVKEPE-SQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~-~~~L~v~v  334 (548)
                      +.+..|.|+|+|++|+||++.+..+.+||||++++-+  .+..++||+++++|. ||.|||+|.|.+.... .-.|.++|
T Consensus         9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v   88 (135)
T cd08692           9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL   88 (135)
T ss_pred             ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence            4456799999999999999976667789999999853  345578999999995 6999999999997533 34788999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      ||++..+++++||++.++.++... +..++|.+.
T Consensus        89 ~d~~~~~~n~~IG~v~lG~~~~~~-~~~~hW~~m  121 (135)
T cd08692          89 YSRSSVRRKHFLGQVWISSDSSSS-EAVEQWKDT  121 (135)
T ss_pred             EeCCCCcCCceEEEEEECCccCCc-hhhhhHHHH
Confidence            999998999999999999987432 223444443

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.65  E-value=1.9e-15  Score=131.11  Aligned_cols=114  Identities=21%  Similarity=0.278  Sum_probs=96.3

Q ss_pred             cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC----CCCCcEEEEEEc---
Q 008950          384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYK---  456 (548)
Q Consensus       384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l~---  456 (548)
                      |+|.+++.|.+.                                .+.|.|+|++|+||+..    +.+||||++++.   
T Consensus         1 G~l~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~   48 (123)
T cd08390           1 GRLWFSVQYDLE--------------------------------EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE   48 (123)
T ss_pred             CEEEEEEEECCC--------------------------------CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC
Confidence            889999999863                                57899999999999753    468999999984   


Q ss_pred             CeEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          457 GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       457 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                      ...++|++++++.||+|||.|.|.+..... ...|.|+|||.+.   .+.+++||++.++|+++........|++|.
T Consensus        49 ~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~---~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          49 RRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR---FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             CCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc---CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            345699999999999999999999865322 2479999999875   567899999999999998877778999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.65  E-value=4.6e-16  Score=137.04  Aligned_cols=126  Identities=25%  Similarity=0.426  Sum_probs=99.6

Q ss_pred             cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 008950          384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG---  457 (548)
Q Consensus       384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~---  457 (548)
                      |+|.++++|.|.                                .+.|.|+|++|++|+.   .+.+||||++++..   
T Consensus         1 G~i~~~l~y~~~--------------------------------~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~   48 (135)
T cd08410           1 GELLLSLNYLPS--------------------------------AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK   48 (135)
T ss_pred             CcEEEEEEECCC--------------------------------CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc
Confidence            889999999974                                4789999999999976   35799999999832   


Q ss_pred             --eEEEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       458 --~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                        ++++|++++++.||+|||+|.|.+...... ..|.|+|||++.   .+++++||++.|+....- .+...+|+.|.++
T Consensus        49 ~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~---~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~  124 (135)
T cd08410          49 LIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV---KSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS  124 (135)
T ss_pred             ccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC---CCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence              346999999999999999999998653232 369999999875   678999999987764332 2234789999887


Q ss_pred             CCeEEEEEEEEEeC
Q 008950          535 KRGVIHVDIRWKMI  548 (548)
Q Consensus       535 ~~G~i~l~~~~~~~  548 (548)
                      ++-.|.   +|+.+
T Consensus       125 ~~~~~~---~wh~l  135 (135)
T cd08410         125 QRTAVE---QWHSL  135 (135)
T ss_pred             CCCEee---EeecC
Confidence            666665   77654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.65  E-value=4.1e-15  Score=130.85  Aligned_cols=117  Identities=20%  Similarity=0.260  Sum_probs=97.4

Q ss_pred             ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEE-EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCcc-CCC
Q 008950          428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIR-FWS  505 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~-~~~  505 (548)
                      ...|.|.|.+|++|+.+  .+|||.+.+++... ||+++.++.||.|+|.|.|.+...  ...+.|.|+.++...+ ..+
T Consensus        10 ~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~   85 (146)
T cd04013          10 ENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDK   85 (146)
T ss_pred             EEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccC
Confidence            45799999999999985  48999999999886 999999999999999999976553  3579999976553211 126


Q ss_pred             CcceEEEEEechhhhccceeceEEEeCCCC-------------CeEEEEEEEEEeC
Q 008950          506 KESLGHVEINLTDVVHNGRINEKYHLINSK-------------RGVIHVDIRWKMI  548 (548)
Q Consensus       506 d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-------------~G~i~l~~~~~~~  548 (548)
                      +.+||.+.|++.++..+...++||+|.+..             .+.||++++|+++
T Consensus        86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence            799999999999999888889999997542             2699999999874

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.64  E-value=1.1e-15  Score=129.79  Aligned_cols=102  Identities=25%  Similarity=0.325  Sum_probs=86.0

Q ss_pred             CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCC-
Q 008950          281 FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-  359 (548)
Q Consensus       281 ~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~-  359 (548)
                      .+|.+||||+++++++.  .++|++++++.||+|||+|.|.+.+...+.|.|+|||++.. +|++||++.++|+++... 
T Consensus         9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~   85 (111)
T cd04052           9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT   85 (111)
T ss_pred             cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence            46899999999998754  26899999999999999999999876678899999999988 899999999999998643 


Q ss_pred             CceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950          360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF  395 (548)
Q Consensus       360 ~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  395 (548)
                      .....|++|.          +...|+|++++.|.|.
T Consensus        86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~  111 (111)
T cd04052          86 SVGQQWFPLS----------GNGQGRIRISALWKPV  111 (111)
T ss_pred             hccceeEECC----------CCCCCEEEEEEEEecC
Confidence            3345777763          2357999999999984

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.64  E-value=5.1e-16  Score=137.12  Aligned_cols=99  Identities=36%  Similarity=0.538  Sum_probs=84.9

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC--cccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ  333 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~  333 (548)
                      .+....|.|.|+|++|++|+..+..|.+||||++++.+  +....++|++++++.||.|||+|.|.+...  ....|.|+
T Consensus         9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~   88 (136)
T cd08402           9 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT   88 (136)
T ss_pred             EEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence            35567799999999999999999899999999999963  333456899999999999999999998632  23479999


Q ss_pred             EEEcCCCCCCCeeEEEEEECccc
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLL  356 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l  356 (548)
                      |||++..++|++||++.+++...
T Consensus        89 v~d~~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          89 VLDYDRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             EEeCCCCCCCceeEEEEECCccC
Confidence            99999999999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.64  E-value=1.8e-15  Score=131.19  Aligned_cols=108  Identities=37%  Similarity=0.507  Sum_probs=91.4

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEec---CCCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~  333 (548)
                      ++...+.|+|+|++|++|+..+..+.+||||++++.+.  ....++|++++++.||.|||+|.|....   .....+.|+
T Consensus        10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~   89 (123)
T cd04035          10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL   89 (123)
T ss_pred             EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence            44556899999999999999988899999999998532  2335799999999999999999996322   235689999


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD  367 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~  367 (548)
                      |||++.. ++++||++.++++++..++.+++++.
T Consensus        90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             EEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence            9999988 88999999999999999988888764

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.64  E-value=1.5e-15  Score=130.99  Aligned_cols=99  Identities=31%  Similarity=0.453  Sum_probs=87.0

Q ss_pred             EEEecCccccCCCCCCCcEEEEEEcCcc----cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCC----CC
Q 008950          270 VVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK----VG  341 (548)
Q Consensus       270 V~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~----~~  341 (548)
                      .++|++|+..+..|.+||||++++.+..    ...++|++++++.||+|||+|.|.+.....+.|.|+|||+|.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            4799999999989999999999998753    224699999999999999999998765456789999999997    78


Q ss_pred             CCCeeEEEEEECcccCCCCceEEEEec
Q 008950          342 GHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       342 ~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      +|++||++.++++++..++....++.|
T Consensus        86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l  112 (120)
T cd04048          86 DHDFLGEAECTLGEIVSSPGQKLTLPL  112 (120)
T ss_pred             CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence            999999999999999988777788877

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.64  E-value=1.1e-15  Score=134.69  Aligned_cols=100  Identities=23%  Similarity=0.352  Sum_probs=86.6

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc---ccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL  332 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v  332 (548)
                      .++...+.|.|+|++|+||+..+..|.+||||++++.+.   ...+++|++++++.||+|||+|.|.+..  ..+..|.|
T Consensus         9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~   88 (138)
T cd08408           9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF   88 (138)
T ss_pred             EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence            456677999999999999999998899999999999653   2235799999999999999999999863  34679999


Q ss_pred             EEEEcCCCCCCCeeEEEEEECcccC
Q 008950          333 QVFDWDKVGGHDRLGMQLVPLKLLT  357 (548)
Q Consensus       333 ~v~d~d~~~~dd~lG~~~i~l~~l~  357 (548)
                      +|||++..+++++||++.+++....
T Consensus        89 ~V~~~~~~~~~~~iG~v~l~~~~~~  113 (138)
T cd08408          89 SVYNKRKMKRKEMIGWFSLGLNSSG  113 (138)
T ss_pred             EEEECCCCCCCcEEEEEEECCcCCC
Confidence            9999999999999999999887554

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.64  E-value=5.5e-16  Score=136.41  Aligned_cols=113  Identities=19%  Similarity=0.356  Sum_probs=91.5

Q ss_pred             ceEEEEEEeeeecCCCC---CCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEcc
Q 008950          428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKR  498 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~  498 (548)
                      .+.|.|+|++|++|+..   +.+||||++++.+     ..++|++++++.||+|||+|.|.+..... ...|.++|||++
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d   91 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD   91 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence            58999999999999863   5789999999953     34699999999999999999999875322 357999999987


Q ss_pred             CCccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEEeC
Q 008950          499 TGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWKMI  548 (548)
Q Consensus       499 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~~~  548 (548)
                      .   .+.+++||++.+++..  .+....+||++..+++-.|.   +|+.+
T Consensus        92 ~---~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~~---~wh~l  133 (133)
T cd08384          92 I---GKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKIE---AWHTL  133 (133)
T ss_pred             C---CCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCChh---eeecC
Confidence            4   5678999999999985  34455789999887665554   67653

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.64  E-value=8.1e-16  Score=135.83  Aligned_cols=108  Identities=31%  Similarity=0.394  Sum_probs=88.6

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v  334 (548)
                      +....+.|.|+|++|+||+..|..|.+||||++++.+.  ....++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus        10 y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v   89 (136)
T cd08404          10 YQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV   89 (136)
T ss_pred             EeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence            34456889999999999999998999999999999543  23456899999999999999999998632  345789999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      ||++..+++++||++.+++...  +.....|.++
T Consensus        90 ~d~d~~~~~~~iG~~~~~~~~~--~~~~~~w~~l  121 (136)
T cd08404          90 LDSDRVTKNEVIGRLVLGPKAS--GSGGHHWKEV  121 (136)
T ss_pred             EECCCCCCCccEEEEEECCcCC--CchHHHHHHH
Confidence            9999999999999999999982  3344445544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.64  E-value=9.3e-16  Score=135.10  Aligned_cols=109  Identities=33%  Similarity=0.476  Sum_probs=88.1

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC--cccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ  333 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~  333 (548)
                      .+....|.|+|+|++|++|++.+..|.+||||++++.+  .+...++|++++++.||.|||+|.|.+...  ....|.|+
T Consensus         8 ~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~   87 (134)
T cd08403           8 CYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA   87 (134)
T ss_pred             EEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence            34556799999999999999999999999999999853  234457899999999999999999998532  23579999


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      |||++..+++++||++.+++...  +.....|.++
T Consensus        88 v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~  120 (134)
T cd08403          88 VVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM  120 (134)
T ss_pred             EEECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence            99999999999999999998733  3333444444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.64  E-value=4.8e-15  Score=130.62  Aligned_cols=116  Identities=16%  Similarity=0.235  Sum_probs=93.6

Q ss_pred             EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCC--------CCCeEEEEEEEcc
Q 008950          430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP--------LHEKIHIEVMSKR  498 (548)
Q Consensus       430 ~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------~~~~l~v~V~d~~  498 (548)
                      .|+|+|++|++|+.   .+.+||||++.+++.+++|++++++.||.|||.|.|.+...+        ....+.++|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            58899999999976   357999999999999999999999999999999999754321        1246899999998


Q ss_pred             CCccCCCCcceEEEEE-echhhhc---cceeceEEEeCCC--CCeEEEEEEEEEeC
Q 008950          499 TGIRFWSKESLGHVEI-NLTDVVH---NGRINEKYHLINS--KRGVIHVDIRWKMI  548 (548)
Q Consensus       499 ~~~~~~~d~~lG~~~i-~L~~l~~---~~~~~~w~~L~~~--~~G~i~l~~~~~~~  548 (548)
                      .   .+.|++||++.+ ++..+..   .....+||+|...  ..|+|.|+++..++
T Consensus        82 ~---~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          82 S---VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV  134 (135)
T ss_pred             C---CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence            5   677899999997 4433332   2355799999754  47999999998874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.63  E-value=1.5e-15  Score=133.69  Aligned_cols=98  Identities=28%  Similarity=0.427  Sum_probs=81.9

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v  334 (548)
                      +....|.|.|+|++|++|+..|..|.+||||++++.+.  ....++|+++++|.||+|||+|.|.+...  ....|.|+|
T Consensus         9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V   88 (135)
T cd08410           9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV   88 (135)
T ss_pred             ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence            44566999999999999999998899999999998432  23457899999999999999999998532  244799999


Q ss_pred             EEcCCCCCCCeeEEEEEECccc
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLL  356 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l  356 (548)
                      ||+|..+++++||++.+.....
T Consensus        89 ~d~d~~~~~~~iG~~~l~~~~~  110 (135)
T cd08410          89 YGHNVKSSNDFIGRIVIGQYSS  110 (135)
T ss_pred             EeCCCCCCCcEEEEEEEcCccC
Confidence            9999999999999998765433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.63  E-value=8e-15  Score=127.60  Aligned_cols=112  Identities=21%  Similarity=0.331  Sum_probs=94.3

Q ss_pred             ceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      .++++|+|++|++|...   +.+||||++.++++.++|++++++.||+|||.|.|.+.+.  ...|.|+|||++.   . 
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~---~-   75 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL---L-   75 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC---C-
Confidence            47899999999999863   5899999999999999999999999999999999988764  4689999999874   3 


Q ss_pred             CCcceEEEEEechhhhccceeceEEEeCC-------CCCeEEEEEEEEEe
Q 008950          505 SKESLGHVEINLTDVVHNGRINEKYHLIN-------SKRGVIHVDIRWKM  547 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~~~~~~w~~L~~-------~~~G~i~l~~~~~~  547 (548)
                      .|++||++.++++++.  ....++|+|..       ...|.|.+++...+
T Consensus        76 ~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          76 CDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             CCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence            5899999999998753  34468899942       13899999987653

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.63  E-value=5e-15  Score=128.58  Aligned_cols=118  Identities=29%  Similarity=0.450  Sum_probs=93.6

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH  343 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d  343 (548)
                      ..|.|+|.+|+ |...+..+.+||||+++++++  ..++|++++++.||.|||+|.|.+..  .+.|.|+|||++..++|
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~   76 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD   76 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence            36899999998 555555789999999999876  23699999999999999999999853  57899999999999899


Q ss_pred             CeeEEEEEECcccCCCCc-----eEEEEeccccccCCCCCCCccccEEEEEE
Q 008950          344 DRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVVEL  390 (548)
Q Consensus       344 d~lG~~~i~l~~l~~~~~-----~~~~l~l~~~~~~~~~~~~~~~G~l~l~l  390 (548)
                      ++||++.++++++.....     ...++++.+...    ......|+|++++
T Consensus        77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~~~  124 (125)
T cd04021          77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENK----GSSVKVGELTVIL  124 (125)
T ss_pred             cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCC----CcceeeeeEEEEe
Confidence            999999999999885432     234666643211    0346789998875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.63  E-value=1.2e-15  Score=134.38  Aligned_cols=125  Identities=20%  Similarity=0.381  Sum_probs=100.5

Q ss_pred             cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 008950          384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG---  457 (548)
Q Consensus       384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~---  457 (548)
                      |+|.+++.|.+.                                .+.|+|+|++|++|+.   .+.+||||++++..   
T Consensus         1 g~l~~~~~y~~~--------------------------------~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~   48 (134)
T cd08403           1 GELMFSLCYLPT--------------------------------AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGR   48 (134)
T ss_pred             CeEEEEEEEcCC--------------------------------CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCc
Confidence            789999999974                                5889999999999986   35799999999842   


Q ss_pred             --eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       458 --~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                        ..++|++++++.||.|||+|.|.+..... ...|.++|||++.   .+.+++||++.+++...  +....+|+.+..+
T Consensus        49 ~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~---~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~~  123 (134)
T cd08403          49 RLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR---VGHNELIGVCRVGPNAD--GQGREHWNEMLAN  123 (134)
T ss_pred             ccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC---CCCCceeEEEEECCCCC--CchHHHHHHHHHC
Confidence              24699999999999999999999865322 2369999999985   67899999999998732  3345789998877


Q ss_pred             CCeEEEEEEEEEeC
Q 008950          535 KRGVIHVDIRWKMI  548 (548)
Q Consensus       535 ~~G~i~l~~~~~~~  548 (548)
                      +.-.+.   +|+.+
T Consensus       124 ~~~~~~---~wh~~  134 (134)
T cd08403         124 PRKPIA---QWHQL  134 (134)
T ss_pred             CCCeee---EeecC
Confidence            666666   77643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.62  E-value=9.4e-15  Score=129.95  Aligned_cols=114  Identities=18%  Similarity=0.360  Sum_probs=90.8

Q ss_pred             EEEEEeeeec--CCC---CCCCCcEEEEEE--c---CeEEEeeeccCCCCCccCceEEEEccCCC-------CCCeEEEE
Q 008950          431 LSVLVQGAED--VEG---ENHNNPYAIILY--K---GDKKRTKMIRKTRDPAWNEEFQFMLDEPP-------LHEKIHIE  493 (548)
Q Consensus       431 L~V~v~~a~~--L~~---~~~~dpyv~v~l--~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~-------~~~~l~v~  493 (548)
                      ..++|..|++  |+.   .+.+||||++++  .   .++.||+++++|.||+|||+|.|.+....       ....|.++
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            3456666666  554   357999999997  2   24679999999999999999999996531       13479999


Q ss_pred             EEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC---CeEEEEEEEEE
Q 008950          494 VMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK---RGVIHVDIRWK  546 (548)
Q Consensus       494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~---~G~i~l~~~~~  546 (548)
                      |||++..  +..|++||++.++|+.+..+.....|++|.++.   +|+++++++-|
T Consensus        84 V~d~~~f--~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r  137 (155)
T cd08690          84 VYHKGGF--LRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLR  137 (155)
T ss_pred             EEeCCCc--ccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEec
Confidence            9999852  257999999999999998877778899988542   89999999876

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.62  E-value=1.2e-14  Score=126.58  Aligned_cols=111  Identities=17%  Similarity=0.277  Sum_probs=92.5

Q ss_pred             EEEEEEeeeecCCC---CCCCCcEEEEEEcCe---EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccC
Q 008950          430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGD---KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRF  503 (548)
Q Consensus       430 ~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~  503 (548)
                      .++|+|.+|++|+.   .+.+||||++.+++.   .++|++++++.||.|||+|.|.+... ....|.|+|||++.   .
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~---~   77 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF---V   77 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC---C
Confidence            58899999999976   357899999998653   46999999999999999999999874 35689999999974   5


Q ss_pred             CCCcceEEEEEechhhhcc---ceeceEEEeCCCCCeEEEEEEEEE
Q 008950          504 WSKESLGHVEINLTDVVHN---GRINEKYHLINSKRGVIHVDIRWK  546 (548)
Q Consensus       504 ~~d~~lG~~~i~L~~l~~~---~~~~~w~~L~~~~~G~i~l~~~~~  546 (548)
                      +.+++||++.++|+++...   .....|++|..  +|+|+|++.+-
T Consensus        78 ~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~  121 (126)
T cd04043          78 GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME  121 (126)
T ss_pred             CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence            6789999999999987542   24568999964  79999988763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.62  E-value=1.1e-14  Score=128.27  Aligned_cols=125  Identities=16%  Similarity=0.206  Sum_probs=99.6

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC-
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG-  341 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~-  341 (548)
                      ...|.|.|++|++|+.++     +|||.+.+++...  .||+++.++.||.|+|.|.|..... ...++|.||+.+... 
T Consensus        10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~   81 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK   81 (146)
T ss_pred             EEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence            467999999999999865     8999999998764  6999999999999999999986443 467999998765322 


Q ss_pred             ---CCCeeEEEEEECcccCCCCceEEEEeccccccCC---CCCCCccccEEEEEEEEEec
Q 008950          342 ---GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS---DPKDMKQRGKIVVELTYVPF  395 (548)
Q Consensus       342 ---~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~---~~~~~~~~G~l~l~l~~~p~  395 (548)
                         ++++||.+.|++.++..+...+.|+++.......   ........+.|+++++|.+.
T Consensus        82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence               5789999999999999988888999986532110   00012455899999999986

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.62  E-value=8.5e-15  Score=126.06  Aligned_cols=106  Identities=30%  Similarity=0.522  Sum_probs=92.0

Q ss_pred             eEEEEEEeeeecCCCC---CCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      |+|.|+|++|++|+..   +.+||||+++++++ .++|++++++.||.|||.|.|.+...  .+.|.|+|||++.   .+
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~---~~   75 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK---VG   75 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC---CC
Confidence            6899999999999863   58999999999774 57999999999999999999998764  4689999999985   67


Q ss_pred             CCcceEEEEEechhhhccceeceEEEeCCCCCeEEE
Q 008950          505 SKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIH  540 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~  540 (548)
                      .|++||++.+++.+++.+ ....||.|.++..+++.
T Consensus        76 ~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~  110 (120)
T cd04045          76 KDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK  110 (120)
T ss_pred             CCCeeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence            889999999999999887 55899999988777655

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.62  E-value=7.6e-15  Score=123.25  Aligned_cols=96  Identities=24%  Similarity=0.384  Sum_probs=76.1

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEc------
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW------  337 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~------  337 (548)
                      |.|+|++|+||+     +.+||||++.+++..  ....+|+++++|+||+|||+|+|.+.  ..+.|.+.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence            689999999996     468999999997632  34579999999999999999999996  367999999998      


Q ss_pred             -CCCCCCCeeEEEEEECc--ccCCCCceEEEEec
Q 008950          338 -DKVGGHDRLGMQLVPLK--LLTPHETKEFTLDL  368 (548)
Q Consensus       338 -d~~~~dd~lG~~~i~l~--~l~~~~~~~~~l~l  368 (548)
                       |..++|+.+|.+.+.|.  .+.....+...+.+
T Consensus        74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~  107 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM  107 (118)
T ss_pred             ccccCcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence             45678999988887764  44444444444443

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.61  E-value=7.9e-15  Score=127.05  Aligned_cols=107  Identities=28%  Similarity=0.457  Sum_probs=88.7

Q ss_pred             EEEEEeeeecCCCC---CCCCcEEEEEEc-CeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC-
Q 008950          431 LSVLVQGAEDVEGE---NHNNPYAIILYK-GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS-  505 (548)
Q Consensus       431 L~V~v~~a~~L~~~---~~~dpyv~v~l~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~-  505 (548)
                      |+|+|++|++|+..   +.+||||+++++ .+.++|++++++.||.|||.|.|.+..   .+.|.++|||++.   ++. 
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~---~~~~   75 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK---FKKK   75 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC---CCCC
Confidence            78999999999763   579999999996 566799999999999999999999965   4689999999875   333 


Q ss_pred             -CcceEEEEEechhhhccc-eeceEEEeCCCC-------CeEEEEEE
Q 008950          506 -KESLGHVEINLTDVVHNG-RINEKYHLINSK-------RGVIHVDI  543 (548)
Q Consensus       506 -d~~lG~~~i~L~~l~~~~-~~~~w~~L~~~~-------~G~i~l~~  543 (548)
                       |++||++.++++++.... ....||+|...+       .|+|.+++
T Consensus        76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence             689999999999998654 336799995432       67777765

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.61  E-value=1e-14  Score=129.15  Aligned_cols=89  Identities=31%  Similarity=0.617  Sum_probs=80.7

Q ss_pred             eEEEEEEeeeecCCCC--CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950          429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK  506 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~--~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d  506 (548)
                      |.|+|+|++|+||+..  +.+||||+++++++.++|++++++.||+|||.|.|.+.++  ...+.++|||++.   ++.|
T Consensus         2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~---~~~d   76 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT---FSKD   76 (145)
T ss_pred             eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC---CCCC
Confidence            7899999999999753  5789999999999999999999999999999999999875  5689999999985   6789


Q ss_pred             cceEEEEEechhhhcc
Q 008950          507 ESLGHVEINLTDVVHN  522 (548)
Q Consensus       507 ~~lG~~~i~L~~l~~~  522 (548)
                      ++||++.+++.++...
T Consensus        77 d~iG~a~i~l~~l~~~   92 (145)
T cd04038          77 DSMGEAEIDLEPLVEA   92 (145)
T ss_pred             CEEEEEEEEHHHhhhh
Confidence            9999999999998764

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.61  E-value=9.6e-16  Score=135.22  Aligned_cols=110  Identities=27%  Similarity=0.292  Sum_probs=90.5

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v  334 (548)
                      +....+.|.|+|++|+||+..+ .+.+||||++++.+.  ...+++|++++++.||+|||+|.|.+..  .....|.|+|
T Consensus        10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V   88 (137)
T cd08409          10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV   88 (137)
T ss_pred             ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence            4455689999999999999988 788999999998754  2345689999999999999999999853  3356899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      ||++..+++++||++.++......++...+|.++.
T Consensus        89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~  123 (137)
T cd08409          89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML  123 (137)
T ss_pred             EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence            99999999999999999977666555555555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.61  E-value=9.9e-15  Score=127.18  Aligned_cols=110  Identities=27%  Similarity=0.475  Sum_probs=90.5

Q ss_pred             EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCc-----
Q 008950          430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGI-----  501 (548)
Q Consensus       430 ~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~-----  501 (548)
                      .|+|+|++|++|+..   +.+||||++++++..++|++++++.||.|||.|.|.+..+  .+.|.|+|||++...     
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~   79 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK   79 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence            689999999999863   5789999999998889999999999999999999998653  458999999987420     


Q ss_pred             ---cCCCCcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEE
Q 008950          502 ---RFWSKESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDI  543 (548)
Q Consensus       502 ---~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~  543 (548)
                         ..+.+++||++.+++.++.  +....||.|...     .+|+|.+++
T Consensus        80 ~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          80 QKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             eeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence               0146899999999999874  334789999853     278888764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.60  E-value=6.5e-15  Score=125.15  Aligned_cols=99  Identities=22%  Similarity=0.442  Sum_probs=82.6

Q ss_pred             eEEEEEEeeeecCCC---C-CCCCcEEEEEEcC---eEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccC
Q 008950          429 GLLSVLVQGAEDVEG---E-NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRT  499 (548)
Q Consensus       429 g~L~V~v~~a~~L~~---~-~~~dpyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~  499 (548)
                      |+|+|+|++|++|+.   . +.+||||++++.+   ..++|++++++.||+|||.|.|.+....  ....|.++|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            689999999999985   3 5789999999853   3469999999999999999999886531  23589999999985


Q ss_pred             CccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950          500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN  533 (548)
Q Consensus       500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~  533 (548)
                         ++.|++||++.++++++...+   +|+++..
T Consensus        81 ---~~~dd~lG~~~i~l~~l~~~~---~~~~~~~  108 (111)
T cd04041          81 ---FTADDRLGRVEIDLKELIEDR---NWMGRRE  108 (111)
T ss_pred             ---CCCCCcceEEEEEHHHHhcCC---CCCcccc
Confidence               678899999999999998544   6887753

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.59  E-value=3.3e-14  Score=122.15  Aligned_cols=114  Identities=27%  Similarity=0.362  Sum_probs=87.3

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC--CCEEEEEEEEcCCCCCC
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGGH  343 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~d~~~~d  343 (548)
                      |.|+|++|++|+..   |.+||||++++++..  .++|+++++ .||.|||+|.|.+....  ...|.+.+||.+...++
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~   75 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD   75 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence            78999999999976   789999999998743  368999888 99999999999986532  34678888888766566


Q ss_pred             CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       344 d~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      ..+|.+.  +..+..+.....|++|...    . ......|+|++++.|
T Consensus        76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~----~-~~~~~~G~l~l~~~~  117 (117)
T cd08383          76 IVIGKVA--LSKLDLGQGKDEWFPLTPV----D-PDSEVQGSVRLRARY  117 (117)
T ss_pred             eEEEEEE--ecCcCCCCcceeEEECccC----C-CCCCcCceEEEEEEC
Confidence            6666655  5555556667788887432    1 124578999999976

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.59  E-value=3e-14  Score=123.76  Aligned_cols=104  Identities=27%  Similarity=0.550  Sum_probs=90.7

Q ss_pred             eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccC-CCCCccCceEEEEccCCC--CCCeEEEEEEEccCCcc
Q 008950          429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIR  502 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~  502 (548)
                      |.|.|+|++|++|+..   +.+||||+++++++.++|++.++ +.||.|||.|.|.+..+.  ..+.|.|+|||++.   
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~---   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN---   77 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---
Confidence            6799999999999763   57999999999998899999885 899999999999998752  24589999999985   


Q ss_pred             CCCCcceEEEEEechhhhccceeceEEEeCCCC
Q 008950          503 FWSKESLGHVEINLTDVVHNGRINEKYHLINSK  535 (548)
Q Consensus       503 ~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~  535 (548)
                      +..+++||++.+++.+++.++....|++|...+
T Consensus        78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~  110 (124)
T cd04049          78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVPAK  110 (124)
T ss_pred             CCCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence            568899999999999999888788999998754

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.59  E-value=1.1e-14  Score=123.55  Aligned_cols=97  Identities=32%  Similarity=0.514  Sum_probs=80.5

Q ss_pred             EEEEEecCccccCCCCCCCcEEEEEEcCc---ccceeeeeeecCCCCCeeeceEEEEEecCC----CCEEEEEEEEcCCC
Q 008950          268 VKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKV  340 (548)
Q Consensus       268 V~V~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~~  340 (548)
                      +-.++|++|+..|..|.+||||++++.++   ....++|++++++.||+|| +|.|.+.+..    .+.|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            34569999999999999999999998764   2335799999999999999 6888764322    57899999999999


Q ss_pred             CCCCeeEEEEEECcccCCCCceEEE
Q 008950          341 GGHDRLGMQLVPLKLLTPHETKEFT  365 (548)
Q Consensus       341 ~~dd~lG~~~i~l~~l~~~~~~~~~  365 (548)
                      ++|++||++.++++++.....+++.
T Consensus        83 ~~d~~iG~~~~~l~~l~~~~~~~~~  107 (110)
T cd04047          83 GKHDLIGEFETTLDELLKSSPLEFE  107 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCceEE
Confidence            9999999999999999866555443

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=1.1e-15  Score=149.96  Aligned_cols=107  Identities=32%  Similarity=0.477  Sum_probs=90.9

Q ss_pred             CCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC-CCCEEEEEEEEc
Q 008950          261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDW  337 (548)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~v~d~  337 (548)
                      .....|+|+|.+|+||.++|.+|.|||||++.+-+..  ..+++|++++.++||+|||+|.|.+... ....|.|+|||+
T Consensus       177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW  256 (683)
T KOG0696|consen  177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW  256 (683)
T ss_pred             ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence            3456899999999999999999999999999997643  2346899999999999999999999643 367899999999


Q ss_pred             CCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      |+.+++||+|..++.+++|.... ..-|+.|
T Consensus       257 DrTsRNDFMGslSFgisEl~K~p-~~GWyKl  286 (683)
T KOG0696|consen  257 DRTSRNDFMGSLSFGISELQKAP-VDGWYKL  286 (683)
T ss_pred             cccccccccceecccHHHHhhcc-hhhHHHH
Confidence            99999999999999999998653 3334444

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.58  E-value=1.2e-14  Score=125.42  Aligned_cols=93  Identities=28%  Similarity=0.473  Sum_probs=80.8

Q ss_pred             CceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~--~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      ..|.|+|+|++|++|+.  .+.+||||+++++++.++|++++++.||+|||+|.|........+.|.|+|||++.   ++
T Consensus        26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~---~s  102 (127)
T cd04032          26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN---GW  102 (127)
T ss_pred             CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC---CC
Confidence            46899999999999975  35789999999999999999999999999999999975443356799999999985   67


Q ss_pred             CCcceEEEEEechhhhcc
Q 008950          505 SKESLGHVEINLTDVVHN  522 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~  522 (548)
                      .|++||++.++|.....+
T Consensus       103 ~dd~IG~~~i~l~~~~~~  120 (127)
T cd04032         103 DDDLLGTCSVVPEAGVHE  120 (127)
T ss_pred             CCCeeEEEEEEecCCcee
Confidence            899999999999976643

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.58  E-value=2.6e-14  Score=122.76  Aligned_cols=109  Identities=21%  Similarity=0.349  Sum_probs=86.3

Q ss_pred             EEEEEeeeecCCCCCCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCccCCCCcc
Q 008950          431 LSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGIRFWSKES  508 (548)
Q Consensus       431 L~V~v~~a~~L~~~~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~d~~  508 (548)
                      |.|+|++|++|+..+.+||||+++++++. ++|+++++ .||.|||+|.|.+...... ..+.+.++|++.   ...+..
T Consensus         2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~---~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS---KDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc---CCCeeE
Confidence            68999999999987889999999998864 69999999 9999999999999764222 367788888763   445667


Q ss_pred             eEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 008950          509 LGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRW  545 (548)
Q Consensus       509 lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~  545 (548)
                      +|.+.+..  +..++..++||+|.+..     .|+|+++++|
T Consensus        78 ~g~v~l~~--~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          78 IGKVALSK--LDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEecC--cCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            77766554  44456668999997642     7999999975

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.58  E-value=1.9e-14  Score=126.45  Aligned_cols=104  Identities=18%  Similarity=0.228  Sum_probs=88.3

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~--  457 (548)
                      .|+|.+++.|.+.                                .+.|.|+|++|++|+.   .+.+||||++++.+  
T Consensus         2 ~G~l~~~l~y~~~--------------------------------~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~   49 (133)
T cd04009           2 YGVLTVKAYYRAS--------------------------------EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRH   49 (133)
T ss_pred             ceEEEEEEEEcCC--------------------------------CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCC
Confidence            6999999998753                                4679999999999986   35799999999953  


Q ss_pred             -----eEEEeeeccCCCCCccCceEEEEccCCC---CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhc
Q 008950          458 -----DKKRTKMIRKTRDPAWNEEFQFMLDEPP---LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVH  521 (548)
Q Consensus       458 -----~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~  521 (548)
                           ..++|+++++|.||+|||+|.|.+...+   ....|.++|||++.   ++.+++||++.++|+++..
T Consensus        50 ~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~---~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          50 LFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDL---LGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             cCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCC---CCCCcEeEEEEEeHHHCCc
Confidence                 3579999999999999999999987632   23589999999984   6779999999999999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.58  E-value=2.8e-15  Score=132.11  Aligned_cols=109  Identities=36%  Similarity=0.408  Sum_probs=91.3

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCC--CCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v  334 (548)
                      +....+.|.|+|++|+||+..+..+.+||||++++.+..  ...++|++++++.||.|||+|.|.+....  ...|.|+|
T Consensus         9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v   88 (134)
T cd00276           9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV   88 (134)
T ss_pred             eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence            344568999999999999999888999999999997642  33568999999999999999999986543  57899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      ||++..+++++||++.+++++  .+.....|+++.
T Consensus        89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~  121 (134)
T cd00276          89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEML  121 (134)
T ss_pred             EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHH
Confidence            999988899999999999999  444555666664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.58  E-value=1.4e-14  Score=127.12  Aligned_cols=105  Identities=35%  Similarity=0.503  Sum_probs=90.4

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecC-CCCEEEEEEEEcCCC
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDWDKV  340 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~v~d~d~~  340 (548)
                      +.|+|+|++|++|+..+..+.+||||++.+.+.  ....++|++++++.||.|||+|.|.+... ..+.|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            889999999999999888889999999999742  22347899999999999999999998653 256899999999988


Q ss_pred             CCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          341 GGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       341 ~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      +++++||++.++++++... ....|++|.
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~  120 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLL  120 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence            8999999999999999865 566777774

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.57  E-value=2.2e-14  Score=124.78  Aligned_cols=108  Identities=27%  Similarity=0.445  Sum_probs=90.2

Q ss_pred             EEEEEeeeecCCCC---CCCCcEEEEEEcC-eEEEeeecc-CCCCCccCceEEEEccCCC---CCCeEEEEEEEccCCcc
Q 008950          431 LSVLVQGAEDVEGE---NHNNPYAIILYKG-DKKRTKMIR-KTRDPAWNEEFQFMLDEPP---LHEKIHIEVMSKRTGIR  502 (548)
Q Consensus       431 L~V~v~~a~~L~~~---~~~dpyv~v~l~~-~~~kT~v~~-~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~~  502 (548)
                      |+|+|++|++|+..   +.+||||++++++ +.++|+++. ++.||.|||.|.|.+....   ....|.++|+|++.   
T Consensus         2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~---   78 (125)
T cd04051           2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP---   78 (125)
T ss_pred             EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC---
Confidence            78999999999863   5799999999988 778999975 5899999999999998752   15689999999874   


Q ss_pred             CCCCcceEEEEEechhhhccce-----eceEEEeCCC---CCeEEEE
Q 008950          503 FWSKESLGHVEINLTDVVHNGR-----INEKYHLINS---KRGVIHV  541 (548)
Q Consensus       503 ~~~d~~lG~~~i~L~~l~~~~~-----~~~w~~L~~~---~~G~i~l  541 (548)
                      ++.|++||++.++|.++..+..     ...||+|.+.   +.|.|++
T Consensus        79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            5678999999999999987653     3689999864   3777764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.56  E-value=7e-14  Score=122.09  Aligned_cols=119  Identities=30%  Similarity=0.414  Sum_probs=93.5

Q ss_pred             EEEEEEEEecCccccC--CCCCCCcEEEEEEcCcc---cceeeeeeecCCC-CCeeeceEEEEEecCCCCEEEEEEEEcC
Q 008950          265 ILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEK---LPWKKTTVKKKNL-NPEWNENFKLVVKEPESQILQLQVFDWD  338 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d--~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~~~~L~v~v~d~d  338 (548)
                      .|+|+|++|+||+..+  ..+.+||||++++.+..   ..+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            5899999999999887  57889999999996432   2457898887665 9999999999998766668999999999


Q ss_pred             CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       339 ~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      .. ++++||++.++++++..+.   .+++|...     .......|.|.+.+++
T Consensus        83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~-----~~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS-----KGEPLELSTLFVHIDI  127 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhcCce---EEEEecCC-----CCCCCcceeEEEEEEE
Confidence            87 8999999999999996542   34455321     0112456888888764

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03008 Phospholipase D delta

Probab=99.55  E-value=4.7e-14  Score=152.05  Aligned_cols=97  Identities=19%  Similarity=0.542  Sum_probs=86.0

Q ss_pred             CCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccce
Q 008950          446 HNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR  524 (548)
Q Consensus       446 ~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~  524 (548)
                      .+||||+|.+++++ .||++++++.||+|||+|.|.|.++  ...|.++|+|++.   + +++.||++.|+|+++..+..
T Consensus        76 tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~---~-gaD~IG~a~IPL~~L~~Ge~  149 (868)
T PLN03008         76 TSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV---F-GAQIIGTAKIPVRDIASGER  149 (868)
T ss_pred             CCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc---c-CCceeEEEEEEHHHcCCCCc
Confidence            57999999998765 4999999999999999999999885  3589999999874   4 46899999999999999988


Q ss_pred             eceEEEeCCC------CCeEEEEEEEEEeC
Q 008950          525 INEKYHLINS------KRGVIHVDIRWKMI  548 (548)
Q Consensus       525 ~~~w~~L~~~------~~G~i~l~~~~~~~  548 (548)
                      .+.|++|.+.      ++|+|+++++|+|+
T Consensus       150 vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv  179 (868)
T PLN03008        150 ISGWFPVLGASGKPPKAETAIFIDMKFTPF  179 (868)
T ss_pred             eEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence            8999999765      26899999999985

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.54  E-value=3.9e-14  Score=124.84  Aligned_cols=102  Identities=27%  Similarity=0.391  Sum_probs=88.0

Q ss_pred             EEEEEeeeecCCC--CCCCCcEEEEEEc----CeEEEeeeccCCCCCccCceEEEEccCCC--------------CCCeE
Q 008950          431 LSVLVQGAEDVEG--ENHNNPYAIILYK----GDKKRTKMIRKTRDPAWNEEFQFMLDEPP--------------LHEKI  490 (548)
Q Consensus       431 L~V~v~~a~~L~~--~~~~dpyv~v~l~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------------~~~~l  490 (548)
                      |+|+|++|++|+.  .+.+||||+++++    +..++|++++++.||.|||+|.|.+....              ....+
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l   80 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL   80 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence            5789999999985  3689999999998    67789999999999999999999987742              23589


Q ss_pred             EEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC
Q 008950          491 HIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK  535 (548)
Q Consensus       491 ~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~  535 (548)
                      .|+|||.+.   .+.+++||++.+++.++........||+|...+
T Consensus        81 ~i~V~d~~~---~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          81 RVELWHASM---VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEcCCc---CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            999999985   568999999999999998777778999998754

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=3.5e-15  Score=142.37  Aligned_cols=224  Identities=29%  Similarity=0.406  Sum_probs=165.4

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEE--EEecC-CCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKL--VVKEP-ESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f--~v~~~-~~~~L~v~  333 (548)
                      ++.....+..++..|++|+.++.++..|||++..+++.  +..+.+|++..+++||.|||+-..  ...+. ....+++.
T Consensus        88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~  167 (362)
T KOG1013|consen   88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV  167 (362)
T ss_pred             hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence            34455778999999999999999999999999999764  233457888899999999976544  33332 24567889


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccC--CCCCCCccccEEEEEEEEEecccCccccccccccccc
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI--SDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSR  411 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~--~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~  411 (548)
                      |.|.+.+..++++|+..+++..+.+.+.+.+..-|.+.+.+  .+......+|++.+++.|-..                
T Consensus       168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~----------------  231 (362)
T KOG1013|consen  168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSST----------------  231 (362)
T ss_pred             eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcC----------------
Confidence            99999999999999999999999887665443322222211  111123567888888866543                


Q ss_pred             CCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----EEEeeeccCCCCCccCceEEEEccC
Q 008950          412 KGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDE  483 (548)
Q Consensus       412 ~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~  483 (548)
                                      ..-+.+++.+|..|..   ++.+||||..++...     ++||.+.++|.||.||+.|.|.+..
T Consensus       232 ----------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~p  295 (362)
T KOG1013|consen  232 ----------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGP  295 (362)
T ss_pred             ----------------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCc
Confidence                            3446778888877754   568999999998542     3599999999999999999999876


Q ss_pred             CCC-CCeEEEEEEEccCCccCCCCcceEEEEEech
Q 008950          484 PPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLT  517 (548)
Q Consensus       484 ~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~  517 (548)
                      ... ..++.|.|||.+.+   .+.+++|-....+.
T Consensus       296 gdLa~~kv~lsvgd~~~G---~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  296 GDLAYKKVALSVGDYDIG---KSNDSIGGSMLGGY  327 (362)
T ss_pred             cchhcceEEEeecccCCC---cCccCCCccccccc
Confidence            533 24889999998753   46677777666554

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.54  E-value=5.9e-15  Score=144.95  Aligned_cols=107  Identities=22%  Similarity=0.433  Sum_probs=92.6

Q ss_pred             ceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950          428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~  499 (548)
                      ...|.|+|.+|+||-.   +|.+||||++.+-.     .++||++++.++||+|||+|+|.+.....+..|.|+|||++.
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence            4679999999999954   67899999999943     346999999999999999999999887667799999999985


Q ss_pred             CccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeE
Q 008950          500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGV  538 (548)
Q Consensus       500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~  538 (548)
                         .++++++|++++.+++|+.... +.||.|.+...|+
T Consensus       259 ---TsRNDFMGslSFgisEl~K~p~-~GWyKlLsqeEGE  293 (683)
T KOG0696|consen  259 ---TSRNDFMGSLSFGISELQKAPV-DGWYKLLSQEEGE  293 (683)
T ss_pred             ---cccccccceecccHHHHhhcch-hhHHHHhhhhcCc
Confidence               6889999999999999987653 7899998876554

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.53  E-value=1.3e-13  Score=118.03  Aligned_cols=100  Identities=26%  Similarity=0.407  Sum_probs=86.8

Q ss_pred             EEEEEeeeecCCCC---CCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950          431 LSVLVQGAEDVEGE---NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK  506 (548)
Q Consensus       431 L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d  506 (548)
                      |+|+|++|++|+..   +.+||||++.+++.. ++|+++.++.||.|||+|.|.+... ..+.+.++|||++.   .+.+
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~---~~~~   76 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR---GGKD   76 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC---CCCC
Confidence            57899999999863   478999999997644 6999999999999999999999764 45689999999985   5788


Q ss_pred             cceEEEEEechhhhccceeceEEEeCCC
Q 008950          507 ESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       507 ~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                      ++||++.+++.++..+.....|++|...
T Consensus        77 ~~iG~~~~~l~~l~~~~~~~~~~~L~~~  104 (115)
T cd04040          77 DLLGSAYIDLSDLEPEETTELTLPLDGQ  104 (115)
T ss_pred             CceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence            9999999999999888777899999865

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.53  E-value=2e-13  Score=118.47  Aligned_cols=108  Identities=24%  Similarity=0.460  Sum_probs=88.9

Q ss_pred             EEEEEEeeeecCCC--CCCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950          430 LLSVLVQGAEDVEG--ENHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK  506 (548)
Q Consensus       430 ~L~V~v~~a~~L~~--~~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d  506 (548)
                      .|.|+|.+|+.+..  .+.+||||+++++++ .++|++++++.||.|||.|.|.+..   .+.|.|+|||++.   .+.+
T Consensus         3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~---~~~~   76 (125)
T cd04021           3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT---LKAD   76 (125)
T ss_pred             eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC---CCCC
Confidence            58899999984433  346999999999887 7899999999999999999999864   3689999999985   6789


Q ss_pred             cceEEEEEechhhhccce-----eceEEEeCCCC------CeEEEEEE
Q 008950          507 ESLGHVEINLTDVVHNGR-----INEKYHLINSK------RGVIHVDI  543 (548)
Q Consensus       507 ~~lG~~~i~L~~l~~~~~-----~~~w~~L~~~~------~G~i~l~~  543 (548)
                      ++||++.++|.+++....     ...|++|....      .|++.+++
T Consensus        77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            999999999999986432     33589996433      78888875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.53  E-value=8.3e-14  Score=124.15  Aligned_cols=98  Identities=23%  Similarity=0.432  Sum_probs=83.3

Q ss_pred             cCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----------------------------EEEeeeccCCCCCc
Q 008950          425 LSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----------------------------KKRTKMIRKTRDPA  472 (548)
Q Consensus       425 ~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~-----------------------------~~kT~v~~~t~nP~  472 (548)
                      .+..+.|.|+|++|++|..   .+.+||||++.+...                             .++|++++++.||.
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~  103 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV  103 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence            3458999999999999975   467999999998532                             25899999999999


Q ss_pred             cCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950          473 WNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL  531 (548)
Q Consensus       473 wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L  531 (548)
                      |||+|.|.+... ..+.|.|+|||++       +++||++.++++++.. ...++||+|
T Consensus       104 WnE~F~f~v~~~-~~~~L~i~V~D~d-------d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         104 WNETFRFEVEDV-SNDQLHLDIWDHD-------DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             cccEEEEEeccC-CCCEEEEEEEecC-------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999999775 3568999999985       5899999999999984 446899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.52  E-value=2.8e-13  Score=118.74  Aligned_cols=111  Identities=22%  Similarity=0.319  Sum_probs=87.3

Q ss_pred             EEEEEEeeeecCCCC--CCCCcEEEEEEcC-------------eEEEeeeccCCCCCcc-CceEEEEccCCCCCCeEEEE
Q 008950          430 LLSVLVQGAEDVEGE--NHNNPYAIILYKG-------------DKKRTKMIRKTRDPAW-NEEFQFMLDEPPLHEKIHIE  493 (548)
Q Consensus       430 ~L~V~v~~a~~L~~~--~~~dpyv~v~l~~-------------~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~v~  493 (548)
                      ...|++++|+||+..  +.+||||++++.+             +.++|++++++.||+| ||+|.|.+..   ++.|.++
T Consensus         2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEE
Confidence            357889999999752  6899999999953             3579999999999999 9999999854   3689999


Q ss_pred             EEEccCCccCCCCcceEEEEEechhhhccc---eeceEEEeCCCC-----CeEEEEEE
Q 008950          494 VMSKRTGIRFWSKESLGHVEINLTDVVHNG---RINEKYHLINSK-----RGVIHVDI  543 (548)
Q Consensus       494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~---~~~~w~~L~~~~-----~G~i~l~~  543 (548)
                      |||++.......+++||++.+++++++...   ....||+|....     +|+|.+.+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            999764201113799999999999998753   356799987542     68777765

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.51  E-value=7.2e-14  Score=112.26  Aligned_cols=85  Identities=36%  Similarity=0.603  Sum_probs=76.9

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR  345 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~  345 (548)
                      |+|+|++|+||+..+..+.+||||++++++.....++|+++.++.+|.|||+|.|.+..+..+.|.|+|||++..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999998888899999999999865445799999999999999999999877777789999999999988999


Q ss_pred             eEEEE
Q 008950          346 LGMQL  350 (548)
Q Consensus       346 lG~~~  350 (548)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.51  E-value=1.9e-13  Score=118.52  Aligned_cols=106  Identities=24%  Similarity=0.377  Sum_probs=87.3

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG--  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~--  457 (548)
                      .|+|++++.|.+.                                .+.|+|+|.+|++|+..   +.+||||++++.+  
T Consensus         1 ~G~~~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~   48 (123)
T cd04035           1 LGTLEFTLLYDPA--------------------------------NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGA   48 (123)
T ss_pred             CcEEEEEEEEeCC--------------------------------CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCC
Confidence            3899999999874                                47899999999999863   5789999999842  


Q ss_pred             ---eEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccce
Q 008950          458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR  524 (548)
Q Consensus       458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~  524 (548)
                         ..++|++++++.||.|||.|.|......  ....+.++|||++.   . ++++||++.++|+++..++.
T Consensus        49 ~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~---~-~~~~iG~~~i~l~~l~~~~~  116 (123)
T cd04035          49 SKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR---F-GNDFLGETRIPLKKLKPNQT  116 (123)
T ss_pred             CCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC---c-CCeeEEEEEEEcccCCCCcc
Confidence               3579999999999999999999633311  23589999999974   5 78999999999999987654

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.49  E-value=8.1e-14  Score=163.56  Aligned_cols=122  Identities=21%  Similarity=0.368  Sum_probs=103.7

Q ss_pred             cCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC-CCEEEEEEEEcC
Q 008950          260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD  338 (548)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d  338 (548)
                      ....|.|+|+|++|+||.  +..|.+||||++.++++..  +||++++++.||+|||.|+|.+.++. ++.+.++|||+|
T Consensus      1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200       1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred             hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence            445799999999999998  4478999999999997642  58999999999999999999998765 467999999999


Q ss_pred             CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccE---EEEEEEEEe
Q 008950          339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK---IVVELTYVP  394 (548)
Q Consensus       339 ~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~---l~l~l~~~p  394 (548)
                      .+++ +.+|.+++++.++..+.....+++|..        +++..|+   |++++.|.+
T Consensus      2052 ~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2052 TFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             ccCC-CCCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence            9854 599999999999998888888888753        2345677   999998865

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.48  E-value=6.5e-13  Score=111.61  Aligned_cols=107  Identities=21%  Similarity=0.364  Sum_probs=77.9

Q ss_pred             EEEEEeeeecCCCCCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC----c
Q 008950          431 LSVLVQGAEDVEGENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG----I  501 (548)
Q Consensus       431 L~V~v~~a~~L~~~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~----~  501 (548)
                      |.|+|++|+||.+  .+||||++.+..     ...||+++++|.||+|||+|+|.+..   .+.|.+.|||++..    .
T Consensus         1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence            5799999999975  589999999854     23699999999999999999999864   46899999998411    1


Q ss_pred             cCCCCcceEEEEEec--hhhhccceeceEEEeCCCCCeEEEEEEEE
Q 008950          502 RFWSKESLGHVEINL--TDVVHNGRINEKYHLINSKRGVIHVDIRW  545 (548)
Q Consensus       502 ~~~~d~~lG~~~i~L--~~l~~~~~~~~w~~L~~~~~G~i~l~~~~  545 (548)
                      ..+.|+.+|+..+.|  +.+..++.....+.|.+   =.|.++|+|
T Consensus        76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~~  118 (118)
T cd08686          76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIKF  118 (118)
T ss_pred             ccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEeC
Confidence            256799997666665  44444444445566542   245555543

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.44  E-value=4.4e-13  Score=116.23  Aligned_cols=88  Identities=25%  Similarity=0.386  Sum_probs=76.0

Q ss_pred             EEEEEEeeeecCCC---CCCCCcEEEEEEcCeE--EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDK--KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       430 ~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~--~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      +++|+|++|++|+.   .+.+||||++++++..  .+|++++++.||+|||+|.|.+..+ ..+.|.++|||++.   ++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~---~~   76 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL---LG   76 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC---CC
Confidence            37899999999976   3579999999998865  4788899999999999999998664 45689999999974   67


Q ss_pred             CCcceEEEEEechhhhc
Q 008950          505 SKESLGHVEINLTDVVH  521 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~  521 (548)
                      .|++||++.++|++...
T Consensus        77 ~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          77 SDDLIGETVIDLEDRFF   93 (124)
T ss_pred             CCceeEEEEEeeccccc
Confidence            89999999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.43  E-value=8.9e-13  Score=113.71  Aligned_cols=98  Identities=16%  Similarity=0.248  Sum_probs=80.2

Q ss_pred             EeeeecCCC---CCCCCcEEEEEEcCeE-------EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCc-cC
Q 008950          435 VQGAEDVEG---ENHNNPYAIILYKGDK-------KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGI-RF  503 (548)
Q Consensus       435 v~~a~~L~~---~~~~dpyv~v~l~~~~-------~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~-~~  503 (548)
                      .++|++|+.   .+.+||||++++.+..       ++|++++++.||+|||+|.|.+... ..+.+.++|||++... ..
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCCC
Confidence            378899975   3578999999997653       6999999999999999999986543 3468999999998410 04


Q ss_pred             CCCcceEEEEEechhhhccceeceEEEeCC
Q 008950          504 WSKESLGHVEINLTDVVHNGRINEKYHLIN  533 (548)
Q Consensus       504 ~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~  533 (548)
                      +.+++||++.+++++++.+.....|++|..
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            688999999999999998776678999943

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=3.2e-13  Score=138.12  Aligned_cols=127  Identities=26%  Similarity=0.410  Sum_probs=103.1

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcC
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD  338 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d  338 (548)
                      .......++++|++|.+|..+|..|++||||.+.++..+   ++|+++...+||+|||.|.|..++ .++.++++|||.|
T Consensus       290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded  365 (1283)
T KOG1011|consen  290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDED  365 (1283)
T ss_pred             ccccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCc
Confidence            355678899999999999999999999999999999765   589999999999999999999987 5679999999988


Q ss_pred             CC-----------CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecc
Q 008950          339 KV-----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK  396 (548)
Q Consensus       339 ~~-----------~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  396 (548)
                      ..           .+|||+|+..|.++.+...-..|+.++  ++.+     ....+|.|++.+...-..
T Consensus       366 ~dlksklrqkl~resddflgqtvievrtlsgemdvwynle--krtd-----ksavsgairlhisveikg  427 (1283)
T KOG1011|consen  366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLE--KRTD-----KSAVSGAIRLHISVEIKG  427 (1283)
T ss_pred             ccHHHHHHHHhhhcccccccceeEEEEecccchhhhcchh--hccc-----hhhccceEEEEEEEEEcC
Confidence            43           368999999999999987666655554  2211     246788777766554433

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.42  E-value=3.9e-12  Score=111.02  Aligned_cols=108  Identities=19%  Similarity=0.366  Sum_probs=88.0

Q ss_pred             EEEEEEeeeecCCC-----CCCCCcEEEEEEc------CeEEEeeeccCCC-CCccCceEEEEccCCCCCCeEEEEEEEc
Q 008950          430 LLSVLVQGAEDVEG-----ENHNNPYAIILYK------GDKKRTKMIRKTR-DPAWNEEFQFMLDEPPLHEKIHIEVMSK  497 (548)
Q Consensus       430 ~L~V~v~~a~~L~~-----~~~~dpyv~v~l~------~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~v~V~d~  497 (548)
                      .|+|+|++|+||+.     .+..||||++++.      ...++|++++++. ||.|||+|.|.+..+ ....|.++|+|+
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~   81 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE   81 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence            58999999999975     3478999999994      3457999988776 999999999998864 345799999998


Q ss_pred             cCCccCCCCcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 008950          498 RTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDIRW  545 (548)
Q Consensus       498 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  545 (548)
                      +.   . ++++||++.++++++..+   .+|++|.+.     ..|.|.+.++.
T Consensus        82 ~~---~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DS---G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CC---C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence            74   4 889999999999998543   368899653     36888888875

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=4.6e-12  Score=131.70  Aligned_cols=133  Identities=25%  Similarity=0.314  Sum_probs=110.7

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK  456 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~  456 (548)
                      ....|.|++++.|...                                ...|.|+|.+|++|+..   +.+||||++++.
T Consensus       150 ~~~~G~l~fsl~Yd~~--------------------------------~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~ll  197 (421)
T KOG1028|consen  150 VKAVGNLQFSLQYDFE--------------------------------LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLL  197 (421)
T ss_pred             ceeeeeEEEEEEeccc--------------------------------CCEEEEEEEEecCCCcccCCCCCCCeeEEEEc
Confidence            4678999999988853                                57899999999999874   468999999996


Q ss_pred             Ce---EEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          457 GD---KKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       457 ~~---~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                      ..   +.+|++.++|+||+|||+|.|.+.... ....|.+.|||.+.   +++++++|.+.++|..+........|.+|.
T Consensus       198 Pdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr---fsr~~~iGev~~~l~~~~~~~~~~~w~~l~  274 (421)
T KOG1028|consen  198 PDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR---FSRHDFIGEVILPLGEVDLLSTTLFWKDLQ  274 (421)
T ss_pred             CCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC---cccccEEEEEEecCccccccccceeeeccc
Confidence            54   359999999999999999999976542 34589999999985   899999999999998887666567799987


Q ss_pred             CC------CCeEEEEEEEEEe
Q 008950          533 NS------KRGVIHVDIRWKM  547 (548)
Q Consensus       533 ~~------~~G~i~l~~~~~~  547 (548)
                      ..      ..|+|.+++.+-|
T Consensus       275 ~~~~~~~~~~gel~~sL~Y~p  295 (421)
T KOG1028|consen  275 PSSTDSEELAGELLLSLCYLP  295 (421)
T ss_pred             cccCCcccccceEEEEEEeec
Confidence            64      2479999998876

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.38  E-value=1.2e-12  Score=140.50  Aligned_cols=92  Identities=28%  Similarity=0.390  Sum_probs=82.3

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG  342 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~  342 (548)
                      .-.++|.|++|-+|.+.|.+|.+|||+++.+|+... ..++..+.+|+||+|++.|++....+....++++|||+|..+.
T Consensus       612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~  690 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ  690 (1105)
T ss_pred             eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence            346779999999999999999999999999997654 2467888999999999999999888878889999999999999


Q ss_pred             CCeeEEEEEECcc
Q 008950          343 HDRLGMQLVPLKL  355 (548)
Q Consensus       343 dd~lG~~~i~l~~  355 (548)
                      |+.+|+..++|+.
T Consensus       691 d~~iget~iDLEn  703 (1105)
T KOG1326|consen  691 DEKIGETTIDLEN  703 (1105)
T ss_pred             cchhhceehhhhh
Confidence            9999999999864

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.36  E-value=6.4e-12  Score=108.62  Aligned_cols=94  Identities=33%  Similarity=0.352  Sum_probs=80.1

Q ss_pred             EEEEEEEecCccccC--CCC--CCCcEEEEEEcCcccceeeeeeecCCCC--CeeeceEEEEEecC--------------
Q 008950          266 LHVKVVRASKLLKKD--FLG--TSDPYVKLSLTGEKLPWKKTTVKKKNLN--PEWNENFKLVVKEP--------------  325 (548)
Q Consensus       266 L~V~V~~A~~L~~~d--~~g--~~dpyv~v~l~~~~~~~~~T~v~~~t~n--P~Wne~f~f~v~~~--------------  325 (548)
                      |+|.|.+|++++..+  ..|  .+||||++.+.+....+++|.+..+++|  |.||+.|.|.+.-+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            799999999966543  356  4999999999986555679999999999  99999999887541              


Q ss_pred             ---------CCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 008950          326 ---------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH  359 (548)
Q Consensus       326 ---------~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~  359 (548)
                               ....|.++|||.|.+++|++||++.++|..+..+
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~  124 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP  124 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence                     2568999999999999999999999999988765

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.32  E-value=1.5e-11  Score=104.34  Aligned_cols=92  Identities=21%  Similarity=0.406  Sum_probs=73.1

Q ss_pred             EEeeeecCCCC---CCCCcEEEEEEcCe------EEEeeeccCCCCCccCceEEEEccCCC---CCCeEEEEEEEccCCc
Q 008950          434 LVQGAEDVEGE---NHNNPYAIILYKGD------KKRTKMIRKTRDPAWNEEFQFMLDEPP---LHEKIHIEVMSKRTGI  501 (548)
Q Consensus       434 ~v~~a~~L~~~---~~~dpyv~v~l~~~------~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~  501 (548)
                      ..++|++|+..   +.+||||++++.+.      .++|++++++.||+|| .|.|.+...+   ..+.|.++|||++.  
T Consensus         5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~--   81 (110)
T cd04047           5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS--   81 (110)
T ss_pred             EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC--
Confidence            34689999763   57999999998653      3799999999999999 6888865432   14689999999985  


Q ss_pred             cCCCCcceEEEEEechhhhccceeceEEEe
Q 008950          502 RFWSKESLGHVEINLTDVVHNGRINEKYHL  531 (548)
Q Consensus       502 ~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L  531 (548)
                       .+.|++||+++++++++..+.  .++|.+
T Consensus        82 -~~~d~~iG~~~~~l~~l~~~~--~~~~~~  108 (110)
T cd04047          82 -SGKHDLIGEFETTLDELLKSS--PLEFEL  108 (110)
T ss_pred             -CCCCcEEEEEEEEHHHHhcCC--CceEEe
Confidence             678999999999999998543  345554

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.31  E-value=1.8e-11  Score=101.12  Aligned_cols=96  Identities=45%  Similarity=0.659  Sum_probs=82.5

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR  345 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~  345 (548)
                      |.|+|++|++|...+..+..+|||++++.+.....++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            68999999999988765688999999998752223689999999999999999999987657899999999998777899


Q ss_pred             eEEEEEECcccCCCCc
Q 008950          346 LGMQLVPLKLLTPHET  361 (548)
Q Consensus       346 lG~~~i~l~~l~~~~~  361 (548)
                      +|.+.+++.++..+..
T Consensus        82 ~G~~~~~l~~~~~~~~   97 (101)
T smart00239       82 IGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eEEEEEEHHHcccCcc
Confidence            9999999999876643

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=7.3e-12  Score=128.30  Aligned_cols=117  Identities=22%  Similarity=0.430  Sum_probs=97.0

Q ss_pred             cccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950          423 EALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       423 ~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~  499 (548)
                      +.+.-++.++++|.+|++|..   .|.+||||.+.++..+++|+++...+||+|||.|+|.|++.  .+.|.+.|||++.
T Consensus       289 gsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded~  366 (1283)
T KOG1011|consen  289 GSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDEDN  366 (1283)
T ss_pred             cccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCcc
Confidence            344457889999999999976   46899999999999999999999999999999999999984  5789999999886


Q ss_pred             Ccc--------CCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEE
Q 008950          500 GIR--------FWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDI  543 (548)
Q Consensus       500 ~~~--------~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~  543 (548)
                      .+.        ..+|++||+..|.+..+-  +.++-||+|+...     +|-|++.+
T Consensus       367 dlksklrqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhi  421 (1283)
T KOG1011|consen  367 DLKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI  421 (1283)
T ss_pred             cHHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEE
Confidence            421        357999999999988763  4567899997642     67776655

>cd00030 C2 C2 domain

Probab=99.25  E-value=5.5e-11  Score=97.90  Aligned_cols=99  Identities=44%  Similarity=0.646  Sum_probs=82.8

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR  345 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~  345 (548)
                      |.|+|++|++|......+..+|||.+.+.+.  ..++|.++.++.||.|||.|.|.+.......+.++||+.+..+.+++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   78 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF   78 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence            4789999999988766778999999999872  23689999999999999999999976456789999999998877899


Q ss_pred             eEEEEEECcccC-CCCceEEEE
Q 008950          346 LGMQLVPLKLLT-PHETKEFTL  366 (548)
Q Consensus       346 lG~~~i~l~~l~-~~~~~~~~l  366 (548)
                      +|.+.+++.++. .......|+
T Consensus        79 ig~~~~~l~~l~~~~~~~~~~~  100 (102)
T cd00030          79 LGEVEIPLSELLDSGKEGELWL  100 (102)
T ss_pred             eEEEEEeHHHhhhcCCcCccee
Confidence            999999999988 444444443

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.24  E-value=2.7e-11  Score=97.17  Aligned_cols=79  Identities=34%  Similarity=0.657  Sum_probs=68.9

Q ss_pred             EEEEEeeeecCCC---CCCCCcEEEEEEcC---eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          431 LSVLVQGAEDVEG---ENHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      |+|+|++|+||+.   .+.+||||++.+++   ..++|++++++.+|.|||.|.|.+..+ ..+.|.|+|||.+.   ..
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~~l~~~V~~~~~---~~   76 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDP-DLDSLSFEVWDKDS---FG   76 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHG-CGTEEEEEEEEETS---SS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecc-cccceEEEEEECCC---CC
Confidence            6899999999987   45899999999988   678999999999999999999997775 34569999999985   56


Q ss_pred             CCcceEEEE
Q 008950          505 SKESLGHVE  513 (548)
Q Consensus       505 ~d~~lG~~~  513 (548)
                      .|++||++.
T Consensus        77 ~~~~iG~~~   85 (85)
T PF00168_consen   77 KDELIGEVK   85 (85)
T ss_dssp             SEEEEEEEE
T ss_pred             CCCEEEEEC
Confidence            699999874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN02270 phospholipase D alpha

Probab=99.19  E-value=2e-10  Score=124.37  Aligned_cols=115  Identities=17%  Similarity=0.348  Sum_probs=99.0

Q ss_pred             ceEEEEEEeeeecCCC---------------------CCCCCcEEEEEEcCeEE-EeeeccCC-CCCccCceEEEEccCC
Q 008950          428 AGLLSVLVQGAEDVEG---------------------ENHNNPYAIILYKGDKK-RTKMIRKT-RDPAWNEEFQFMLDEP  484 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~---------------------~~~~dpyv~v~l~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~  484 (548)
                      -|.|.++|.+|++|+.                     ++.+||||.|.+++.+. +|+++.+. .||+|||+|..+|...
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            3789999999998873                     13679999999999876 99999884 6999999999999875


Q ss_pred             CCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC------CeEEEEEEEEEeC
Q 008950          485 PLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK------RGVIHVDIRWKMI  548 (548)
Q Consensus       485 ~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~------~G~i~l~~~~~~~  548 (548)
                        ...+.|.|.|.+    .-+..+||.+.||..+++++..+++||++.+..      ..+|+++++|+|+
T Consensus        87 --~~~v~f~vkd~~----~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~  150 (808)
T PLN02270         87 --ASNIIFTVKDDN----PIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV  150 (808)
T ss_pred             --cceEEEEEecCC----ccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence              357999999987    456779999999999999999999999998752      4599999999985

>PLN02223 phosphoinositide phospholipase C

Probab=99.15  E-value=2.1e-10  Score=119.52  Aligned_cols=98  Identities=27%  Similarity=0.448  Sum_probs=82.3

Q ss_pred             ceEEEEEEEEecCccc-----cCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEE
Q 008950          263 VGILHVKVVRASKLLK-----KDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF  335 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~-----~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~  335 (548)
                      ...|.|+|++|.+++.     .+.....||||+|.+.|-.  ...++|++..++.||+|||+|.|.+..++-..|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            4679999999998751     1223467999999997632  23457888889999999999999999888888999999


Q ss_pred             EcCCCCCCCeeEEEEEECcccCCCC
Q 008950          336 DWDKVGGHDRLGMQLVPLKLLTPHE  360 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~l~~~~  360 (548)
                      |+|..++|+|+|++.+|++.|..|-
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy  512 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI  512 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc
Confidence            9998888999999999999999884

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.15  E-value=1.6e-10  Score=99.99  Aligned_cols=90  Identities=26%  Similarity=0.385  Sum_probs=75.5

Q ss_pred             EEEEEeeeecCCC-----CC--CCCcEEEEEEcC---eEEEeeeccCCCC--CccCceEEEEccCCCC------------
Q 008950          431 LSVLVQGAEDVEG-----EN--HNNPYAIILYKG---DKKRTKMIRKTRD--PAWNEEFQFMLDEPPL------------  486 (548)
Q Consensus       431 L~V~v~~a~~L~~-----~~--~~dpyv~v~l~~---~~~kT~v~~~t~n--P~wne~f~f~v~~~~~------------  486 (548)
                      |+|.|.+|+|++.     .|  .+||||++.+.+   .+++|.+.+++.|  |.||++|.|++..++.            
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            7899999999653     23  599999999976   4579999999999  9999999999877432            


Q ss_pred             ----------CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccc
Q 008950          487 ----------HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNG  523 (548)
Q Consensus       487 ----------~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~  523 (548)
                                ...|.++|||.|.   ++.|++||.++++|+.+....
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~---~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDK---FSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcc---cCCCCcceEEEEEhhhccccc
Confidence                      2378999999985   788999999999999987654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02270 phospholipase D alpha

Probab=99.13  E-value=6.3e-10  Score=120.59  Aligned_cols=128  Identities=22%  Similarity=0.375  Sum_probs=104.3

Q ss_pred             ceEEEEEEEEecCccccC------------------CCCCCCcEEEEEEcCcccceeeeeeecCC-CCCeeeceEEEEEe
Q 008950          263 VGILHVKVVRASKLLKKD------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVVK  323 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d------------------~~g~~dpyv~v~l~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v~  323 (548)
                      .|.|.|+|.+|++|+..+                  ..+.+||||.+.+++.++  .||+++.+. .||.|||+|.+.+.
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEeec
Confidence            599999999999998631                  125689999999998775  799999874 69999999999997


Q ss_pred             cCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecccC
Q 008950          324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED  398 (548)
Q Consensus       324 ~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~  398 (548)
                      ... ..+.|.|.|.|.++. .+||.+.+|..++..++..+.|+++....    .+..+....|+++++|.|...+
T Consensus        85 h~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~  153 (808)
T PLN02270         85 HMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKD  153 (808)
T ss_pred             cCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccC
Confidence            754 689999999998875 59999999999999998888888886431    1112233599999999998765

>cd00030 C2 C2 domain

Probab=99.13  E-value=6.3e-10  Score=91.46  Aligned_cols=97  Identities=30%  Similarity=0.527  Sum_probs=82.1

Q ss_pred             EEEEEeeeecCCC---CCCCCcEEEEEEcC-eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950          431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK  506 (548)
Q Consensus       431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d  506 (548)
                      +.|.|++|++|+.   .+..||||++.+.+ ...+|+++.++.||.||+.|.|.+... ....+.++|+++..   ...+
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~---~~~~   76 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR---FSKD   76 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC---CCCC
Confidence            4689999999975   34799999999998 778999999999999999999999873 34689999999875   4568


Q ss_pred             cceEEEEEechhhh-ccceeceEEEe
Q 008950          507 ESLGHVEINLTDVV-HNGRINEKYHL  531 (548)
Q Consensus       507 ~~lG~~~i~L~~l~-~~~~~~~w~~L  531 (548)
                      .++|++.+++.++. .......|++|
T Consensus        77 ~~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          77 DFLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             ceeEEEEEeHHHhhhcCCcCcceecC
Confidence            99999999999998 55555678764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=99.10  E-value=4e-10  Score=91.52  Aligned_cols=85  Identities=22%  Similarity=0.422  Sum_probs=73.3

Q ss_pred             HHHHHhhch-hHH-HHHHHHHHHHHHhhHhh-ccCcceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEeeeeeEeC
Q 008950           78 NRFLSDMWP-YLD-KAICANVRTTAQPIFDE-YSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG  153 (548)
Q Consensus        78 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~l~~~~~~~~~lG~~~P~i~~v~~~~~-~~~~~~ld~~~~~~~  153 (548)
                      |.+++|++- +++ +.+.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++++.+. .++++.+|+++.|.|
T Consensus         1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G   79 (91)
T PF10296_consen    1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG   79 (91)
T ss_pred             ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence            667777755 444 78899999999999998 57998 99999999999999999999999864 445699999999999


Q ss_pred             CCcEEEEEEE
Q 008950          154 NPNIVLVLKL  163 (548)
Q Consensus       154 ~~~i~l~~~~  163 (548)
                      +..+.+++++
T Consensus        80 ~~~l~l~t~l   89 (91)
T PF10296_consen   80 GFSLTLETKL   89 (91)
T ss_pred             CeEEEEEEEE
Confidence            9999988765

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.08  E-value=1.2e-09  Score=90.18  Aligned_cols=90  Identities=34%  Similarity=0.672  Sum_probs=77.4

Q ss_pred             EEEEEeeeecCCCC---CCCCcEEEEEEcCe---EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          431 LSVLVQGAEDVEGE---NHNNPYAIILYKGD---KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       431 L~V~v~~a~~L~~~---~~~dpyv~v~l~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      +.+.|++|++|...   +..+|||++++.+.   .++|+++.++.||.|||.|.|.+.... ...|.++||+++.   .+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~---~~   77 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDR---FG   77 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCC---cc
Confidence            67899999999874   36899999999875   689999999999999999999998753 6789999999985   45


Q ss_pred             CCcceEEEEEechhhhccce
Q 008950          505 SKESLGHVEINLTDVVHNGR  524 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~~~  524 (548)
                      .+..+|.+.+++.++..+..
T Consensus        78 ~~~~~G~~~~~l~~~~~~~~   97 (101)
T smart00239       78 RDDFIGQVTIPLSDLLLGGR   97 (101)
T ss_pred             CCceeEEEEEEHHHcccCcc
Confidence            68999999999999876543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02952 phosphoinositide phospholipase C

Probab=99.06  E-value=2.4e-09  Score=114.01  Aligned_cols=104  Identities=28%  Similarity=0.390  Sum_probs=84.3

Q ss_pred             ceEEEEEEEEecCcccc------CCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEE
Q 008950          263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV  334 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~------d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v  334 (548)
                      ...|.|+|++|.+++..      +.....||||++.+-+-.  ..+++|+++.++.||+|||+|.|.+..++-..++|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999987531      112345999999996532  2346899999999999999999999887777899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      ||+|..+.|+++|++.+|+..|..|-.   +++|.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~  580 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH  580 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence            999988889999999999999998852   55653

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.05  E-value=5.4e-11  Score=123.70  Aligned_cols=134  Identities=28%  Similarity=0.509  Sum_probs=104.4

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc-------------------------ccc---eeeeeeecCC
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-------------------------KLP---WKKTTVKKKN  309 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~-------------------------~~~---~~~T~v~~~t  309 (548)
                      ..+.|.-.+.|.+.+|+||.++|.+|.||||+.+.+.+.                         ..+   .+-|+++++|
T Consensus       108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T  187 (1103)
T KOG1328|consen  108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT  187 (1103)
T ss_pred             CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence            355666778888999999999999999999999887211                         011   1458899999


Q ss_pred             CCCeeeceEEEEEecCCCCEEEEEEEEcCCC---------------------------------C---CCCeeEEEEEEC
Q 008950          310 LNPEWNENFKLVVKEPESQILQLQVFDWDKV---------------------------------G---GHDRLGMQLVPL  353 (548)
Q Consensus       310 ~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~---------------------------------~---~dd~lG~~~i~l  353 (548)
                      +||+|+|.|.|.+.+..++.+.+.+||+|.-                                 +   .|||+|++.||+
T Consensus       188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl  267 (1103)
T KOG1328|consen  188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL  267 (1103)
T ss_pred             CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence            9999999999999999999999999998842                                 1   389999999999


Q ss_pred             cccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEeccc
Q 008950          354 KLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE  397 (548)
Q Consensus       354 ~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~  397 (548)
                      +++... +-+.|+.|..+     +...+.+|.+++.+......+
T Consensus       268 ~EiP~~-Gld~WFkLepR-----S~~S~VqG~~~LklwLsT~e~  305 (1103)
T KOG1328|consen  268 AEIPPD-GLDQWFKLEPR-----SDKSKVQGQVKLKLWLSTKEE  305 (1103)
T ss_pred             hcCCcc-hHHHHhccCcc-----cccccccceEEEEEEEeeecc
Confidence            999865 23344444332     224678999999998766544

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.99  E-value=1.4e-09  Score=113.69  Aligned_cols=112  Identities=18%  Similarity=0.282  Sum_probs=98.6

Q ss_pred             EEEEEEeeeecCCCC---CCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC
Q 008950          430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS  505 (548)
Q Consensus       430 ~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~  505 (548)
                      -|.|.|-+|+||+..   |..||||.|.+.... .+|.++.+++.|-|.|.|.|.++.  .-..|.+-|||+|    +++
T Consensus         6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~--~F~~l~fYv~D~d----~~~   79 (800)
T KOG2059|consen    6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR--TFRYLSFYVWDRD----LKR   79 (800)
T ss_pred             ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc--ceeeEEEEEeccc----ccc
Confidence            478999999999974   689999999998866 599999999999999999999876  3468999999998    689


Q ss_pred             CcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEEe
Q 008950          506 KESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRWKM  547 (548)
Q Consensus       506 d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~~  547 (548)
                      |+.||.+.|.=.++-.....+.||.|....     +|+|++++++.+
T Consensus        80 D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e  126 (800)
T KOG2059|consen   80 DDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE  126 (800)
T ss_pred             ccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence            999999999999998777889999997542     899999998764

>PLN02223 phosphoinositide phospholipase C

Probab=98.94  E-value=1.2e-08  Score=106.58  Aligned_cols=112  Identities=18%  Similarity=0.284  Sum_probs=88.3

Q ss_pred             CceEEEEEEeeeecCCC--------CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEE
Q 008950          427 GAGLLSVLVQGAEDVEG--------ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE  493 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~--------~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~  493 (548)
                      ....|.|+|++|++++.        ...+||||+|.+.|     ..++|.+..++.||+|||+|+|.+..++ -..|.|+
T Consensus       407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE-LAlLrf~  485 (537)
T PLN02223        407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD-LALISFE  485 (537)
T ss_pred             cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC-ceEEEEE
Confidence            35679999999998741        13579999999965     3457888888999999999999998863 3579999


Q ss_pred             EEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 008950          494 VMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRW  545 (548)
Q Consensus       494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~  545 (548)
                      |+|++.   ...|+++|+..+|++.+..+-   +..+|.+..     .-++.++++|
T Consensus       486 V~D~D~---~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        486 VYDYEV---STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             EEecCC---CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence            999985   467899999999999987665   567886542     4566777666

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.94  E-value=3.4e-09  Score=112.73  Aligned_cols=98  Identities=23%  Similarity=0.356  Sum_probs=81.7

Q ss_pred             ceEEEEEEEEecCcccc------CCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEE
Q 008950          263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV  334 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~------d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v  334 (548)
                      ...|.|+|+.+.+++..      +.....||||+|.+-+-.  ..+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46899999999987421      222357999999996522  2346888999999999999999999988888999999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCC
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHE  360 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~  360 (548)
                      +|+|..++|+|+|+..+|+..|..|-
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy  573 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGI  573 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCcc
Confidence            99998889999999999999999884

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.92  E-value=7.1e-09  Score=110.23  Aligned_cols=98  Identities=29%  Similarity=0.509  Sum_probs=82.3

Q ss_pred             EEEEEEEEecCccccC----CCCCCCcEEEEEEcCcc--cceeeee-eecCCCCCeeeceEEEEEecCCCCEEEEEEEEc
Q 008950          265 ILHVKVVRASKLLKKD----FLGTSDPYVKLSLTGEK--LPWKKTT-VKKKNLNPEWNENFKLVVKEPESQILQLQVFDW  337 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d----~~g~~dpyv~v~l~~~~--~~~~~T~-v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~  337 (548)
                      +|.|+|+++.++...-    ....+||||.|++-|-.  ....+|+ +..++-||.|+|+|+|.+..|+-..|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            7999999999776542    12458999999986532  1235788 667999999999999999999888999999999


Q ss_pred             CCCCCCCeeEEEEEECcccCCCCce
Q 008950          338 DKVGGHDRLGMQLVPLKLLTPHETK  362 (548)
Q Consensus       338 d~~~~dd~lG~~~i~l~~l~~~~~~  362 (548)
                      |..++|||+|+..+|+..|..|-.+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh  721 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH  721 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee
Confidence            9999999999999999999988433

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.91  E-value=3.7e-09  Score=85.80  Aligned_cols=86  Identities=19%  Similarity=0.338  Sum_probs=71.7

Q ss_pred             EEEEEEEecCccccC---CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950          266 LHVKVVRASKLLKKD---FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG  342 (548)
Q Consensus       266 L~V~V~~A~~L~~~d---~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~  342 (548)
                      |.|+|.+|+++...+   +.+.+||||.+++++..  +.||++   +.||.|||+|.|.+.  ....+.+.|||... ..
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~   72 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ   72 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence            679999999999877   57889999999999764  357765   589999999999994  46799999999863 45


Q ss_pred             CCeeEEEEEECcccCCC
Q 008950          343 HDRLGMQLVPLKLLTPH  359 (548)
Q Consensus       343 dd~lG~~~i~l~~l~~~  359 (548)
                      .-.+|..-+.++++...
T Consensus        73 ~~Pi~llW~~~sdi~Ee   89 (109)
T cd08689          73 PVPVGLLWLRLSDIAEE   89 (109)
T ss_pred             ecceeeehhhHHHHHHH
Confidence            56899999999888754

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.88  E-value=9.6e-09  Score=109.17  Aligned_cols=98  Identities=24%  Similarity=0.370  Sum_probs=80.7

Q ss_pred             ceEEEEEEEEecCcc----cc--CCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEE
Q 008950          263 VGILHVKVVRASKLL----KK--DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV  334 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~----~~--d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v  334 (548)
                      ...|.|+|+.+.+++    ..  +.....||||+|.+.+-.  ..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            357999999998753    11  122457999999996432  2346899999989999999999999888778899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCC
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHE  360 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~  360 (548)
                      +|+|..+.|+++|++.+|+..|..|-
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy  556 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGI  556 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCcc
Confidence            99998888999999999999999874

>PLN02228 Phosphoinositide phospholipase C

Probab=98.88  E-value=2.4e-08  Score=105.87  Aligned_cols=124  Identities=22%  Similarity=0.312  Sum_probs=92.8

Q ss_pred             eEEEEEEEEecCccc---c---CCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCee-eceEEEEEecCCCCEEEEEE
Q 008950          264 GILHVKVVRASKLLK---K---DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQV  334 (548)
Q Consensus       264 g~L~V~V~~A~~L~~---~---d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~v  334 (548)
                      ..|+|+|++|.+|+.   .   +.....||||++.+.+-.  ..+++|++++++.||.| ||+|.|.+..++-..|+|.|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            479999999998731   1   112347999999996532  23468999988899999 99999999888778899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF  395 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  395 (548)
                      +|+|..+.|+++|++.+|+..|..|-.   .++|....     ...-....|.+++.+.+.
T Consensus       511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~-----G~~l~~atLfv~~~~~~~  563 (567)
T PLN02228        511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA-----GKAYKNTRLLVSFALDPP  563 (567)
T ss_pred             EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC-----CCCCCCeEEEEEEEEcCc
Confidence            999988889999999999999987732   23443210     011234578888877653

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.84  E-value=1.6e-09  Score=112.92  Aligned_cols=101  Identities=29%  Similarity=0.430  Sum_probs=87.8

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc----cceeeeeeecCCCCCeeeceEEEEEecC----CCCE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQI  329 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~  329 (548)
                      .+..+...|.|.|+.|+++.+-|.+|.|||||+|.+++..    ....+|+|+.+|+||+|+|+|+|.|...    +...
T Consensus       941 ~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am 1020 (1103)
T KOG1328|consen  941 YYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAM 1020 (1103)
T ss_pred             EeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccce
Confidence            3455667899999999999999999999999999999764    2356899999999999999999999632    2567


Q ss_pred             EEEEEEEcCCCCCCCeeEEEEEECcccCC
Q 008950          330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTP  358 (548)
Q Consensus       330 L~v~v~d~d~~~~dd~lG~~~i~l~~l~~  358 (548)
                      +.|+|+|+|-.+.+||-|++.+.|.++..
T Consensus      1021 ~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1021 LHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             EEEEeeccceecccccchHHHHhhCCCCC
Confidence            99999999999999999999999988863

>PLN02952 phosphoinositide phospholipase C

Probab=98.83  E-value=4.8e-08  Score=104.24  Aligned_cols=100  Identities=25%  Similarity=0.288  Sum_probs=81.9

Q ss_pred             ceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEE
Q 008950          428 AGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE  493 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~--~-------~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~  493 (548)
                      ...|.|+|++|++++.  .       ..+||||+|.+-|     .+++|+++.++.||+|||+|+|.+..+. -..+.|+
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE-LAllrf~  547 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE-LALLRIE  547 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC-ccEEEEE
Confidence            5679999999988742  1       1359999999865     4569999999999999999999988763 3579999


Q ss_pred             EEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          494 VMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                      |+|++.   ...++++|+..+|++.+..+-   +|++|.+.
T Consensus       548 V~D~D~---~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~  582 (599)
T PLN02952        548 VREYDM---SEKDDFGGQTCLPVSELRPGI---RSVPLHDK  582 (599)
T ss_pred             EEecCC---CCCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence            999874   567899999999999998765   48899754

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.75  E-value=1.1e-07  Score=98.59  Aligned_cols=178  Identities=20%  Similarity=0.288  Sum_probs=127.1

Q ss_pred             eeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC----CCCCeeEEEEEECcccCCCCceEEEEeccccccCCC
Q 008950          301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV----GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD  376 (548)
Q Consensus       301 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~----~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~  376 (548)
                      .+|.++.+.+||.|.+.|.+.......|.++++++|.+..    ...+|+|++...+.++.........+.+..      
T Consensus        43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~------  116 (529)
T KOG1327|consen   43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP------  116 (529)
T ss_pred             cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc------
Confidence            4899999999999999998888776789999999998743    467899999999998886533322222211      


Q ss_pred             CCCCccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEE
Q 008950          377 PKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAII  453 (548)
Q Consensus       377 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v  453 (548)
                       .....+|.|.+...-...                                ......-..+|++|..+   +.+|||..+
T Consensus       117 -~~~~~~g~iti~aee~~~--------------------------------~~~~~~~~~~~~~ld~kd~f~ksd~~l~~  163 (529)
T KOG1327|consen  117 -GKNAGSGTITISAEEDES--------------------------------DNDVVQFSFRAKNLDPKDFFSKSDPYLEF  163 (529)
T ss_pred             -CccCCcccEEEEeecccc--------------------------------cCceeeeeeeeeecCcccccccCCcceEE
Confidence             123456777777621110                                11122223557888764   579999998


Q ss_pred             EEc--Ce----EEEeeeccCCCCCccCceEEEEccCCCC---CCeEEEEEEEccCCccCCCCcceEEEEEechhhhc
Q 008950          454 LYK--GD----KKRTKMIRKTRDPAWNEEFQFMLDEPPL---HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVH  521 (548)
Q Consensus       454 ~l~--~~----~~kT~v~~~t~nP~wne~f~f~v~~~~~---~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~  521 (548)
                      +-.  ..    .++|.++++++||.|.+ |.......+.   +..+.++++|.+.   .++++++|++..++.++..
T Consensus       164 ~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~---~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  164 YKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDS---NGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             EEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCC---CCCcCceeEecccHHHhcc
Confidence            753  22    24999999999999988 5555554433   3478899999986   4677999999999998864

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.71  E-value=1.8e-07  Score=99.53  Aligned_cols=111  Identities=20%  Similarity=0.229  Sum_probs=86.8

Q ss_pred             ceEEEEEEeeeecCC----C-----CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEE
Q 008950          428 AGLLSVLVQGAEDVE----G-----ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE  493 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~----~-----~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~  493 (548)
                      ...|.|+|+.+++++    .     ....||||+|.+-|     .+++|+++.++.||+|||+|+|.+..+. -..+.|.
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe-LAllRf~  529 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE-LALLRLE  529 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc-eeEEEEE
Confidence            467999999998742    1     12579999999954     3469999999999999999999988763 3589999


Q ss_pred             EEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 008950          494 VMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRW  545 (548)
Q Consensus       494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~  545 (548)
                      |+|++.   ...|+++|+..+|++.|..+-   +..+|.+..     ...+.+.++|
T Consensus       530 V~d~D~---~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        530 VHEYDM---SEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EEECCC---CCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence            999874   467899999999999987765   356776542     4566676665

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.70  E-value=5.7e-08  Score=102.74  Aligned_cols=126  Identities=25%  Similarity=0.382  Sum_probs=94.9

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEEcCccc---ceeeeeeecCCCCCeee-ceEEEEEecCCCCEEEEEEEEcCC
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN-ENFKLVVKEPESQILQLQVFDWDK  339 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~---~~~~T~v~~~t~nP~Wn-e~f~f~v~~~~~~~L~v~v~d~d~  339 (548)
                      -.|.|.|+.||.|+... .|...|||+|.+.|...   ..++|.|..|++||+|| |+|+|.+.+|+-..|+|.|||.|-
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            46889999999999553 35567999999976432   23566777899999999 999999999998999999999999


Q ss_pred             CCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecccC
Q 008950          340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED  398 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~  398 (548)
                      ++...|||++.+|+..+..|-   ...+|...     -.+.-.-..|.+.+...|..+.
T Consensus      1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~-----ySEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNG-----YSEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred             cCCcceeeeeecchhhhhccc---eeeecccC-----chhhhhhhhheeeeEeccccCc
Confidence            988889999999999998762   12233111     0112234567777777776544

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.70  E-value=1.7e-07  Score=99.88  Aligned_cols=112  Identities=19%  Similarity=0.215  Sum_probs=87.6

Q ss_pred             CceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEE
Q 008950          427 GAGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHI  492 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~--~-------~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v  492 (548)
                      ....|.|+|+.+++++.  .       ..+||||+|.+-|     .+++|++..++.||+|||+|+|.+..++ -..|.|
T Consensus       467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE-LAllRf  545 (598)
T PLN02230        467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE-LALLRV  545 (598)
T ss_pred             cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc-eeEEEE
Confidence            34679999999998642  1       2479999999954     2358999889999999999999998763 358999


Q ss_pred             EEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 008950          493 EVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRW  545 (548)
Q Consensus       493 ~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~  545 (548)
                      +|+|++.   ...|+++|+..||+..|..+-   +..+|.+..     .-.+.++++|
T Consensus       546 ~V~d~d~---~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        546 EVHEHDI---NEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EEEECCC---CCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence            9999885   468999999999999997765   356776543     4466666665

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.69  E-value=9.7e-08  Score=77.61  Aligned_cols=82  Identities=23%  Similarity=0.430  Sum_probs=68.3

Q ss_pred             EEEEEeeeecCCC------CCCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccC
Q 008950          431 LSVLVQGAEDVEG------ENHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRF  503 (548)
Q Consensus       431 L~V~v~~a~~L~~------~~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~  503 (548)
                      |.++|++|+|+..      .+.+||||.+++++. +.+|++   +.||.|||.|+|.+..   ...+.+.|||+..    
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~~----   70 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKGG----   70 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCCC----
Confidence            5789999999964      357899999999987 568887   5999999999999943   4679999999864    


Q ss_pred             CCCcceEEEEEechhhhcc
Q 008950          504 WSKESLGHVEINLTDVVHN  522 (548)
Q Consensus       504 ~~d~~lG~~~i~L~~l~~~  522 (548)
                      ...-.+|-.-+.++++.+.
T Consensus        71 ~~~~Pi~llW~~~sdi~Ee   89 (109)
T cd08689          71 DQPVPVGLLWLRLSDIAEE   89 (109)
T ss_pred             CeecceeeehhhHHHHHHH
Confidence            3456899999999999763

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.64  E-value=4.7e-08  Score=107.10  Aligned_cols=104  Identities=26%  Similarity=0.360  Sum_probs=84.0

Q ss_pred             ceEEEEEEeeeecCC---CCCCCCcEEEEEEcCe-----EEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEc
Q 008950          428 AGLLSVLVQGAEDVE---GENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSK  497 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~---~~~~~dpyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~  497 (548)
                      .|.|.|.|+-|++|+   ....+||||+.++...     ++||+++++|.||.|||...+.--...  ....|.+.||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            478999999999984   3457999999999653     359999999999999999888622211  235899999998


Q ss_pred             cCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          498 RTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       498 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                      ..   ...+.++|.+.|+|.++.......+||+|...
T Consensus      1603 ~~---~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GG---LLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             cc---eeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            75   67789999999999998766655699999754

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.64  E-value=9.1e-08  Score=97.72  Aligned_cols=118  Identities=28%  Similarity=0.404  Sum_probs=95.3

Q ss_pred             eEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcccceeeeeeecCCCCCeee-ceEEEEEecC--CCCEEEEEEEEcCC
Q 008950          264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN-ENFKLVVKEP--ESQILQLQVFDWDK  339 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wn-e~f~f~v~~~--~~~~L~v~v~d~d~  339 (548)
                      |.|.|+|..||+|+-+|.. ...|.||++.+++..   ++|.+..+++||.|| +.|.|.|.+.  ....|.+++.|+|.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t---~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT---FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccc---eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            7789999999999999854 567999999999766   589999999999999 7899999753  46789999999999


Q ss_pred             CCCCCeeEEEEEECcccCCCC----------ceEEEEeccccccCCCCCCCccccEEEEEEE
Q 008950          340 VGGHDRLGMQLVPLKLLTPHE----------TKEFTLDLLKHTNISDPKDMKQRGKIVVELT  391 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~~----------~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~  391 (548)
                      .+.+|-||.+.|++..|.-.+          ...-|+++...+       ...+|+|.+-+.
T Consensus        80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivk  134 (1169)
T KOG1031|consen   80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVK  134 (1169)
T ss_pred             cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEE
Confidence            999999999999999876322          123577765432       346788776654

>PLN02352 phospholipase D epsilon

Probab=98.62  E-value=2.9e-07  Score=100.02  Aligned_cols=122  Identities=16%  Similarity=0.241  Sum_probs=92.9

Q ss_pred             CCceEEEEEEEEecCcccc----CC-CCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEE
Q 008950          261 KPVGILHVKVVRASKLLKK----DF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF  335 (548)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~----d~-~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~  335 (548)
                      .-.|.|.++|.+|+-+...    +. ....||||.+.+++.++  .||   .+..||.|||+|.+.+.......+.|.|.
T Consensus         7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk   81 (758)
T PLN02352          7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLK   81 (758)
T ss_pred             ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence            4569999999999843221    11 11239999999998765  577   56679999999999998765457999998


Q ss_pred             EcCCCCCCCeeEEEEEECcccCCCCc-eEEEEeccccccCCCCCCCccc-cEEEEEEEEEecccC
Q 008950          336 DWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLKHTNISDPKDMKQR-GKIVVELTYVPFKED  398 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~l~~~~~-~~~~l~l~~~~~~~~~~~~~~~-G~l~l~l~~~p~~~~  398 (548)
                      |     ...+||.+.+|..++..++. .+.|+++....      ++... ..|+++++|.|...+
T Consensus        82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN------GKPNPELKLRFMLWFRPAELE  135 (758)
T ss_pred             c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC------CCCCCCCEEEEEEEEEEhhhC
Confidence            8     25799999999999998865 78888885431      11223 599999999998765

>PLN02352 phospholipase D epsilon

Probab=98.60  E-value=3.9e-07  Score=99.04  Aligned_cols=109  Identities=24%  Similarity=0.356  Sum_probs=88.0

Q ss_pred             ceEEEEEEeeeecCCCC--------CCCCcEEEEEEcCeEE-EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEcc
Q 008950          428 AGLLSVLVQGAEDVEGE--------NHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR  498 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~--------~~~dpyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~  498 (548)
                      -|.|.++|.+|+-+...        ...||||.|.+++.+. +|   .+..||+|||+|..+|... .+..+.+.|.|. 
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~-   83 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK-   83 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC-
Confidence            48899999999743211        1239999999998775 88   5667999999999999875 334699999883 


Q ss_pred             CCccCCCCcceEEEEEechhhhccce-eceEEEeCCCC-----CeEEEEEEEEEeC
Q 008950          499 TGIRFWSKESLGHVEINLTDVVHNGR-INEKYHLINSK-----RGVIHVDIRWKMI  548 (548)
Q Consensus       499 ~~~~~~~d~~lG~~~i~L~~l~~~~~-~~~w~~L~~~~-----~G~i~l~~~~~~~  548 (548)
                             ..+||.+.||..+++.++. +++||++.+..     ..+|+++++|+|+
T Consensus        84 -------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  132 (758)
T PLN02352         84 -------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA  132 (758)
T ss_pred             -------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence                   2799999999999999865 89999998752     3599999999985

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.58  E-value=1.9e-07  Score=95.41  Aligned_cols=114  Identities=22%  Similarity=0.477  Sum_probs=94.8

Q ss_pred             ceEEEEEEeeeecCCCC----CCCCcEEEEEEcCeEEEeeeccCCCCCccC-ceEEEEccCCCC-CCeEEEEEEEccCCc
Q 008950          428 AGLLSVLVQGAEDVEGE----NHNNPYAIILYKGDKKRTKMIRKTRDPAWN-EEFQFMLDEPPL-HEKIHIEVMSKRTGI  501 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~----~~~dpyv~v~l~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~-~~~l~v~V~d~~~~~  501 (548)
                      .|.+.|.|..||+||-.    ...|.||++++.+.++||.+..+++||.|| +=|.|.+.+... ++.|.+.++|++.  
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt--   79 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT--   79 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc--
Confidence            37788999999999863    468999999999999999999999999999 469999987654 3589999999996  


Q ss_pred             cCCCCcceEEEEEechhhhcc----------ceeceEEEeCCC---CCeEEEEEEE
Q 008950          502 RFWSKESLGHVEINLTDVVHN----------GRINEKYHLINS---KRGVIHVDIR  544 (548)
Q Consensus       502 ~~~~d~~lG~~~i~L~~l~~~----------~~~~~w~~L~~~---~~G~i~l~~~  544 (548)
                       .+.++.||++.|+++.+.-.          ..+..||++.+.   =+|+|.+-++
T Consensus        80 -ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk  134 (1169)
T KOG1031|consen   80 -YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK  134 (1169)
T ss_pred             -cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence             56789999999999887532          246799999775   2788877654

>PLN02228 Phosphoinositide phospholipase C

Probab=98.55  E-value=8.5e-07  Score=94.26  Aligned_cols=113  Identities=18%  Similarity=0.180  Sum_probs=87.7

Q ss_pred             ceEEEEEEeeeecCCC----C-----CCCCcEEEEEEcC-----eEEEeeeccCCCCCcc-CceEEEEccCCCCCCeEEE
Q 008950          428 AGLLSVLVQGAEDVEG----E-----NHNNPYAIILYKG-----DKKRTKMIRKTRDPAW-NEEFQFMLDEPPLHEKIHI  492 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~----~-----~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~v  492 (548)
                      ...|.|+|++|++|+.    .     ...||||+|.+-|     .+++|+++.++.||+| ||+|+|.+..+. -..+.+
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE-LA~lRf  508 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE-LALLWF  508 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc-eeEEEE
Confidence            4579999999998731    1     2379999999854     3469999988899999 999999998764 358999


Q ss_pred             EEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEEe
Q 008950          493 EVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRWKM  547 (548)
Q Consensus       493 ~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~~  547 (548)
                      .|+|++.   .+.|+++|+..+|++.|..+-   +..+|.+..     ...+.+.+.+.+
T Consensus       509 ~V~D~d~---~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~~  562 (567)
T PLN02228        509 KVQDYDN---DTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALDP  562 (567)
T ss_pred             EEEeCCC---CCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence            9999874   567899999999999997654   356776542     456777776643

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.54  E-value=3.3e-07  Score=99.55  Aligned_cols=90  Identities=21%  Similarity=0.340  Sum_probs=77.9

Q ss_pred             CCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEE--EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC
Q 008950          426 SGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKK--RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG  500 (548)
Q Consensus       426 ~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~--kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~  500 (548)
                      +..-..+|++.+|-+|..   ++..|||+.+.++++..  +..-+.+|.||+|++.|++.+..+ .+..+.++|+|+|. 
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D~-  687 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLP-FEKDLIVEVYDHDL-  687 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccc-hhhcceeEEEEeec-
Confidence            345678899999999975   57899999999999874  777889999999999999998876 66789999999996 


Q ss_pred             ccCCCCcceEEEEEechhh
Q 008950          501 IRFWSKESLGHVEINLTDV  519 (548)
Q Consensus       501 ~~~~~d~~lG~~~i~L~~l  519 (548)
                        .+.|+.+|+.+++|++-
T Consensus       688 --~~~d~~iget~iDLEnR  704 (1105)
T KOG1326|consen  688 --EAQDEKIGETTIDLENR  704 (1105)
T ss_pred             --ccccchhhceehhhhhc
Confidence              67899999999999764

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.48  E-value=1.2e-06  Score=93.57  Aligned_cols=111  Identities=20%  Similarity=0.341  Sum_probs=88.0

Q ss_pred             EEEEEEeeeecCCCC-------CCCCcEEEEEEcCe-----EEEee-eccCCCCCccCceEEEEccCCCCCCeEEEEEEE
Q 008950          430 LLSVLVQGAEDVEGE-------NHNNPYAIILYKGD-----KKRTK-MIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS  496 (548)
Q Consensus       430 ~L~V~v~~a~~L~~~-------~~~dpyv~v~l~~~-----~~kT~-v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d  496 (548)
                      .|.|.|+++++++..       ...||||.|.+-|-     ..+|+ +..++-||.|+|+|+|.+..|.. .-|.+.|+|
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d  695 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHD  695 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEe
Confidence            899999999976531       35899999998663     35999 55579999999999999998744 589999999


Q ss_pred             ccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEEe
Q 008950          497 KRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDIRWKM  547 (548)
Q Consensus       497 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~~  547 (548)
                      ++.   .+.|+++|+..+|++.|..+-+   -.+|.+.     ..-.|.+.++|..
T Consensus       696 ~d~---~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  696 YDY---IGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEALSSASLFVRIAIVE  745 (746)
T ss_pred             cCC---CCcccccceeeccHHHhhCcee---eeeecCCCCccccceeEEEEEEEec
Confidence            985   5779999999999999976553   4666553     2567777777754

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.42  E-value=5.6e-07  Score=75.40  Aligned_cols=101  Identities=23%  Similarity=0.316  Sum_probs=76.4

Q ss_pred             EEEEEeeeecCCC----------------CCCCCcEEEEEE----cCeEEEeeeccCCCCCccCceEEEEccC-------
Q 008950          431 LSVLVQGAEDVEG----------------ENHNNPYAIILY----KGDKKRTKMIRKTRDPAWNEEFQFMLDE-------  483 (548)
Q Consensus       431 L~V~v~~a~~L~~----------------~~~~dpyv~v~l----~~~~~kT~v~~~t~nP~wne~f~f~v~~-------  483 (548)
                      |.|.|++|.+|..                .=..|+||++.+    .++.++|+++.++..|.|+.+++|+|.-       
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            4577888877742                014689999996    3456799999999999999999999971       


Q ss_pred             -C------CCCCeEEEEEEEccCCcc-------CCCCcceEEEEEechhhhcc-ceeceEEEe
Q 008950          484 -P------PLHEKIHIEVMSKRTGIR-------FWSKESLGHVEINLTDVVHN-GRINEKYHL  531 (548)
Q Consensus       484 -~------~~~~~l~v~V~d~~~~~~-------~~~d~~lG~~~i~L~~l~~~-~~~~~w~~L  531 (548)
                       .      -....+.++||.......       ..+|-.||.+.||+.+|+.+ ..+..||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence             1      012378999999764311       24577999999999999986 467899985

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.35  E-value=1.8e-06  Score=91.78  Aligned_cols=99  Identities=22%  Similarity=0.271  Sum_probs=79.7

Q ss_pred             eEEEEEEeeeecCCCC--CCCCcEEEEEEcC------eEEEeeeccCCCCCccC-ceEEEEccCCCCCCeEEEEEEEccC
Q 008950          429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKG------DKKRTKMIRKTRDPAWN-EEFQFMLDEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~--~~~dpyv~v~l~~------~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~~l~v~V~d~~~  499 (548)
                      -.|.|.|+.||.|+..  +...|||+|.+-|      +.++|.++.+.+||+|| |.|+|.+.+| .-..|.+.|+|.|.
T Consensus      1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEecccc
Confidence            4588999999999864  3567999999855      33466677799999999 9999999997 44689999999986


Q ss_pred             CccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                         ++...+||++..|+..+..+-   +..+|.+.
T Consensus      1144 ---fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ 1172 (1267)
T KOG1264|consen 1144 ---FSDPNFLAQATYPVKAIKSGF---RSVPLKNG 1172 (1267)
T ss_pred             ---cCCcceeeeeecchhhhhccc---eeeecccC
Confidence               677789999999998876543   35666654

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.27  E-value=6.5e-07  Score=98.47  Aligned_cols=107  Identities=26%  Similarity=0.213  Sum_probs=87.1

Q ss_pred             CceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEE---EecCCCCEEEEEEEE
Q 008950          262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV---VKEPESQILQLQVFD  336 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~---v~~~~~~~L~v~v~d  336 (548)
                      ..|.|.|-|..|++|+-..-...+||||+.++.+.  +..++||++.++|.||+|||...+.   ........|.++||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            36899999999999966554567999999999765  3446799999999999999987765   222345789999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      .+....+.++|.+.++|.++...+....|+.+
T Consensus      1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred             ccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence            99999999999999999998866555556655

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=2.7e-06  Score=82.17  Aligned_cols=96  Identities=33%  Similarity=0.375  Sum_probs=79.7

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ  333 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~  333 (548)
                      ++.....-|.|+++.+..|..+|.+|.+||||..++.+..  .-+++|.+.++|.||.||+.|.|.+..  .....+.+.
T Consensus       227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls  306 (362)
T KOG1013|consen  227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS  306 (362)
T ss_pred             ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence            4555667899999999999999999999999999997542  235789999999999999999998853  336789999


Q ss_pred             EEEcCCCCCCCeeEEEEEEC
Q 008950          334 VFDWDKVGGHDRLGMQLVPL  353 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l  353 (548)
                      |||++..+..+++|-+....
T Consensus       307 vgd~~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  307 VGDYDIGKSNDSIGGSMLGG  326 (362)
T ss_pred             ecccCCCcCccCCCcccccc
Confidence            99999877889998766543

>PLN02964 phosphatidylserine decarboxylase

Probab=97.83  E-value=2.2e-05  Score=84.98  Aligned_cols=92  Identities=17%  Similarity=0.310  Sum_probs=75.4

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEE-EEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVK-LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD  336 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~-v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d  336 (548)
                      ..+.-.|+..+++++|+    ++   ..|+|.. +++|.+.   .||.+.++|+||+||+...|.+........++.|||
T Consensus        48 ~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  117 (644)
T PLN02964         48 SAEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFE  117 (644)
T ss_pred             ecccccCeEEEEeehhh----hc---cCCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEe
Confidence            34566799999999997    33   3588766 4555444   699999999999999999999986666667999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCC
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPH  359 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~  359 (548)
                      .+.+++++.+|.|++++.++...
T Consensus       118 ~~~~s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        118 TNRLSKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             cCCCCHHHhhhheeecHhhccHH
Confidence            99999999999999988777644

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.76  E-value=3.4e-05  Score=60.13  Aligned_cols=92  Identities=21%  Similarity=0.238  Sum_probs=67.1

Q ss_pred             EEEEEEecCccccCCCC-CCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEEEEcCCCCCC
Q 008950          267 HVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKVGGH  343 (548)
Q Consensus       267 ~V~V~~A~~L~~~d~~g-~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~d~d~~~~d  343 (548)
                      -++|+.+++|.-....| .+.-|++--+.-.+-...||+++++..||+|+|+|.|.+..  ..+-.|.|.|+.  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            57899999987654333 33456664333222223689999999999999999998763  335678889998  45677


Q ss_pred             CeeEEEEEECcccCCCC
Q 008950          344 DRLGMQLVPLKLLTPHE  360 (548)
Q Consensus       344 d~lG~~~i~l~~l~~~~  360 (548)
                      +.||.|++.++++..++
T Consensus        80 e~iG~~sL~l~s~geeE   96 (103)
T cd08684          80 RTIGECSLSLRTLSTQE   96 (103)
T ss_pred             ceeeEEEeecccCCHHH
Confidence            89999999999987653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.70  E-value=0.011  Score=59.48  Aligned_cols=239  Identities=17%  Similarity=0.231  Sum_probs=150.1

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEe-------cCCCCEEEEEEEEcC
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK-------EPESQILQLQVFDWD  338 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~-------~~~~~~L~v~v~d~d  338 (548)
                      +.|+|++|+|.+...   .-.-.+..++++...   .|..+..+..|.||......+.       ......|++++|..|
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~   75 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD   75 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence            578999999998762   346788889998775   6777888999999988777764       224678999999988


Q ss_pred             -CCCCCCeeEEEEEECccc---CCC--CceEEEEeccccccCCCCCCCccccEEEEEEEEEecccCccccc--cccccc-
Q 008950          339 -KVGGHDRLGMQLVPLKLL---TPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFS--SVSKKY-  409 (548)
Q Consensus       339 -~~~~dd~lG~~~i~l~~l---~~~--~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~--~~~~~~-  409 (548)
                       ..++.+.+|.+.++|+..   ..+  ..+..|++|....+    +-.+.+-+|.+.+.............  ...+.. 
T Consensus        76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~----~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p  151 (340)
T PF12416_consen   76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS----KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP  151 (340)
T ss_pred             CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc----ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence             556778999999999998   544  34556777754311    11234567777776665443211100  000000 


Q ss_pred             ccCC-------CCCCC--------------CCcccccCCceEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeE
Q 008950          410 SRKG-------SGNDQ--------------SSDEEALSGAGLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDK  459 (548)
Q Consensus       410 ~~~~-------~~~~~--------------~~~~~~~~~~g~L~V~v~~a~~L~~~---------~~~dpyv~v~l~~~~  459 (548)
                      .+.+       ..+..              -.|.......-.|.|++..|+||..-         +...-|....+-|..
T Consensus       152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~  231 (340)
T PF12416_consen  152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND  231 (340)
T ss_pred             cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence            0000       00000              00111112345688888899887542         124456667777888


Q ss_pred             EEeeeccCCCCCccC--ceEEEEccCC--------CCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhcc
Q 008950          460 KRTKMIRKTRDPAWN--EEFQFMLDEP--------PLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN  522 (548)
Q Consensus       460 ~kT~v~~~t~nP~wn--e~f~f~v~~~--------~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~  522 (548)
                      ..|...+...+|.|.  +...+.++..        .....|.|.++..        +..||.+.+++..++..
T Consensus       232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g--------~~~Lg~~~v~l~~Ll~~  296 (340)
T PF12416_consen  232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG--------NQSLGSTSVPLQPLLPK  296 (340)
T ss_pred             eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC--------CcEEEEEEEEhhhccCC
Confidence            888888888889775  3222555432        1122566666664        36899999999999753

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.67  E-value=7.3e-05  Score=77.96  Aligned_cols=88  Identities=32%  Similarity=0.558  Sum_probs=70.5

Q ss_pred             EEEecCccccCCCCCCCcEEEEEEc---CcccceeeeeeecCCCCCeeeceEEEEEecC----CCCEEEEEEEEcCCCCC
Q 008950          270 VVRASKLLKKDFLGTSDPYVKLSLT---GEKLPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQILQLQVFDWDKVGG  342 (548)
Q Consensus       270 V~~A~~L~~~d~~g~~dpyv~v~l~---~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L~v~v~d~d~~~~  342 (548)
                      ..+|++|.++|..+++|||..++-.   +.....++|.+.++++||.|.+ |.+.....    ....+.+.+||++..++
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence            4568999999999999999988753   2233457999999999999986 34443322    24678899999999999


Q ss_pred             CCeeEEEEEECcccCC
Q 008950          343 HDRLGMQLVPLKLLTP  358 (548)
Q Consensus       343 dd~lG~~~i~l~~l~~  358 (548)
                      ++++|++..++.++..
T Consensus       221 ~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQE  236 (529)
T ss_pred             cCceeEecccHHHhcc
Confidence            9999999999998875

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.66  E-value=4.4e-05  Score=59.53  Aligned_cols=91  Identities=12%  Similarity=0.196  Sum_probs=66.2

Q ss_pred             EEEeeeecCCC--C--CCCCcEEEEEE--cC-eEEEeeeccCCCCCccCceEEEEccCCCCCC-eEEEEEEEccCCccCC
Q 008950          433 VLVQGAEDVEG--E--NHNNPYAIILY--KG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSKRTGIRFW  504 (548)
Q Consensus       433 V~v~~a~~L~~--~--~~~dpyv~v~l--~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~v~V~d~~~~~~~~  504 (548)
                      +++..|+||.-  .  .++.-|++--+  .. -..||++.+++.||+|+|+|.|.+......+ .|.+.|+..     +.
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~-----~~   77 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ-----TP   77 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-----CC
Confidence            67888999852  1  24555776443  33 2359999999999999999999987643433 788899884     56


Q ss_pred             CCcceEEEEEechhhhccceeceEE
Q 008950          505 SKESLGHVEINLTDVVHNGRINEKY  529 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~~~~~~w~  529 (548)
                      +++.||.+.++|+++-..+ ..+|-
T Consensus        78 RKe~iG~~sL~l~s~geeE-~~HW~  101 (103)
T cd08684          78 RKRTIGECSLSLRTLSTQE-TDHWL  101 (103)
T ss_pred             ccceeeEEEeecccCCHHH-hhhhh
Confidence            7899999999999875433 24554

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.00011  Score=72.58  Aligned_cols=105  Identities=23%  Similarity=0.274  Sum_probs=84.3

Q ss_pred             CCceEEEEEEeeeecCCCC----CCCCcEEEEEEcCe-----EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEE
Q 008950          426 SGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS  496 (548)
Q Consensus       426 ~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d  496 (548)
                      ...|.+.|.|++|++|..+    ..++|||+|++...     +.+|+...+|.+|-|-+...|.-..  ....|.+.||-
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp--~~k~Lq~tv~g  343 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP--PGKYLQGTVWG  343 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC--CccEEEEEEec
Confidence            3578899999999999642    37899999998543     3499999999999888877776544  35689999998


Q ss_pred             ccCCccCCCCcceEEEEEechhhhccc-eeceEEEeCCC
Q 008950          497 KRTGIRFWSKESLGHVEINLTDVVHNG-RINEKYHLINS  534 (548)
Q Consensus       497 ~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~w~~L~~~  534 (548)
                      .-.+  +..+.++|.+++-+.++-... ....||+|-++
T Consensus       344 dygR--md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  344 DYGR--MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             cccc--cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence            7654  678899999999999995544 66799999765

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.52  E-value=0.00012  Score=72.88  Aligned_cols=117  Identities=19%  Similarity=0.258  Sum_probs=92.7

Q ss_pred             ceEEEEEEeeeecCCC---CCCCCcEEEEEE---cC--eEEEeeeccCCCCCccCceEEEEccCCCC-C---------Ce
Q 008950          428 AGLLSVLVQGAEDVEG---ENHNNPYAIILY---KG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-H---------EK  489 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~---~~~~dpyv~v~l---~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~---------~~  489 (548)
                      ...|++.|.++++++.   ....|.|+++.+   ++  ++.+|.+++.|.+|.|+|.|...+...+. +         .-
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            4457777888887764   336788999886   22  33499999999999999999999876322 1         15


Q ss_pred             EEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC---CeEEEEEEEEE
Q 008950          490 IHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK---RGVIHVDIRWK  546 (548)
Q Consensus       490 l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~---~G~i~l~~~~~  546 (548)
                      +.|+++.+...  +.+|.++|.+++.|.-|.....+...++|.+..   +|++.++++.|
T Consensus       446 ~kfeifhkggf--~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  446 KKFEIFHKGGF--NRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             eeEEEeecccc--ccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            78999998864  788999999999999887777788899998764   89999988865

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.34  E-value=0.00038  Score=58.69  Aligned_cols=93  Identities=28%  Similarity=0.389  Sum_probs=68.7

Q ss_pred             EEEEEEEecCccccCC---------C----CCCCcEEEEEEc--CcccceeeeeeecCCCCCeeeceEEEEEe-------
Q 008950          266 LHVKVVRASKLLKKDF---------L----GTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVK-------  323 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~---------~----g~~dpyv~v~l~--~~~~~~~~T~v~~~t~nP~Wne~f~f~v~-------  323 (548)
                      |.|.|++|.+|+....         .    -.-++||++.+.  ++. +.++|+++.++.-|.|+.+++|.+.       
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~-e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK-ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC-ceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence            4688899999975321         0    124799999864  332 3468999999999999999999875       


Q ss_pred             -c-------CCCCEEEEEEEEcCCC----------CCCCeeEEEEEECcccCCC
Q 008950          324 -E-------PESQILQLQVFDWDKV----------GGHDRLGMQLVPLKLLTPH  359 (548)
Q Consensus       324 -~-------~~~~~L~v~v~d~d~~----------~~dd~lG~~~i~l~~l~~~  359 (548)
                       +       .+...+.++||+.+..          .+|-.||.+.||+.+|...
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~  133 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK  133 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence             1       1356899999997632          2455899999999998754

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=97.27  E-value=0.00045  Score=75.09  Aligned_cols=90  Identities=21%  Similarity=0.365  Sum_probs=74.4

Q ss_pred             CCceEEEEEEeeeecCCCCCCCCcEEE-EEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          426 SGAGLLSVLVQGAEDVEGENHNNPYAI-ILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       426 ~~~g~L~V~v~~a~~L~~~~~~dpyv~-v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      .-.|+..+++.+|+ +   +..|+|.. +++|.+.+||...++|.||+||+...|.+..... ...++.|||.+.   ++
T Consensus        51 ~~~~~~~~~~~~~~-~---~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~s  122 (644)
T PLN02964         51 DFSGIALLTLVGAE-M---KFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGP-HLARISVFETNR---LS  122 (644)
T ss_pred             cccCeEEEEeehhh-h---ccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCc-ceEEEEEEecCC---CC
Confidence            35799999999997 3   33588665 5678888999999999999999999999877533 457999999985   78


Q ss_pred             CCcceEEEEEechhhhccc
Q 008950          505 SKESLGHVEINLTDVVHNG  523 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~~  523 (548)
                      .++.+|.++++|.++...+
T Consensus       123 ~n~lv~~~e~~~t~f~~kq  141 (644)
T PLN02964        123 KNTLVGYCELDLFDFVTQE  141 (644)
T ss_pred             HHHhhhheeecHhhccHHH
Confidence            9999999999998887653

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=97.25  E-value=0.0016  Score=68.66  Aligned_cols=225  Identities=17%  Similarity=0.269  Sum_probs=141.6

Q ss_pred             CCCCceeCCCC-------cchHHHHHHHHhhchhH--H----HHHHHHHHHHHHhhHhhc-cCcceeeeEEEeEeeCCCC
Q 008950           61 EIPLWVKNPDY-------ERVDWLNRFLSDMWPYL--D----KAICANVRTTAQPIFDEY-SGKFKIESIEFENLTLGTL  126 (548)
Q Consensus        61 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp~~--~----~~~~~~i~~~~~~~l~~~-~p~~~l~~~~~~~~~lG~~  126 (548)
                      +.|.|+..-..       -.|-.+|.++..+....  .    .++-+.+...+..++... .... ++.+++.++-+|.+
T Consensus        81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~L-L~~~~i~elElg~~  159 (1051)
T KOG3532|consen   81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRL-LQEIRIRELELGTK  159 (1051)
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh-hcccceehhhhccc
Confidence            68888876432       35666777777666521  1    222233333333333332 3444 78999999999999


Q ss_pred             CCeEeeEEEEecC------------C-------------CeEEEeeeeeEeCCCcEEEEEEE-eeeEEEEEEEEEEEEEE
Q 008950          127 PPTIYGIRVYETN------------E-------------NQLVMEPALRWAGNPNIVLVLKL-LSFRITVQLVDLQIFAA  180 (548)
Q Consensus       127 ~P~i~~v~~~~~~------------~-------------~~~~ld~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~g~  180 (548)
                      -|.+++.+++.-+            +             ..+.+=++++|.|+.--++.+.. .+.+..+.|+-.+++|.
T Consensus       160 f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm  239 (1051)
T KOG3532|consen  160 FMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGM  239 (1051)
T ss_pred             cccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccc
Confidence            9999999998621            0             12344568889887765555543 22233334445699999


Q ss_pred             EEEEEecCCCCCCceeEEEEEcCCCceEEEEEEE--ccccccccchhHHHHHHHHHHHhhhcccCCceee--eecc----
Q 008950          181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKI--LGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYE--IPIL----  252 (548)
Q Consensus       181 ~rv~l~pl~~~~P~~~~~~~~f~~~P~id~~~~~--~g~~~~~~P~l~~~i~~~i~~~~~~~~v~P~~~~--~~l~----  252 (548)
                      +|+.+.     .-...+++++|++.|.+.-+.+.  .|-.+-  -.+.+.|.+.++..+.....||++-.  .|..    
T Consensus       240 ~r~~~~-----r~py~hw~~sf~G~P~~e~di~s~~qg~qLQ--~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~  312 (1051)
T KOG3532|consen  240 VRVILS-----RQPYHHWTFSFVGQPIFETDINSQIQGHQLQ--RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPI  312 (1051)
T ss_pred             eeEEEE-----eccceeeeeeeccCchhhhhhHHHHHHHHHH--HHhHHHHHHHHHHHHHhhccCcchhhhccccccCcc
Confidence            999986     33357899999999987554442  211111  11335667777778888899998531  1111    


Q ss_pred             -ccc----cccccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC
Q 008950          253 -DAS----SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG  295 (548)
Q Consensus       253 -~~~----~~~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~  295 (548)
                       ...    ....-.+.|.+.|++.++..|...  +++..-||.+.+..
T Consensus       313 ~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~  358 (1051)
T KOG3532|consen  313 FQASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES  358 (1051)
T ss_pred             cccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence             110    011234679999999999888654  57889999998864

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.00035  Score=69.08  Aligned_cols=109  Identities=25%  Similarity=0.339  Sum_probs=84.4

Q ss_pred             CCceEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEE-E
Q 008950          261 KPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-D  336 (548)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d  336 (548)
                      ...|.+.|.|++|++|..+.-. ..++|||+|++.+..  ..+.+|+...+|.+|-+.+...|.- .+....|.+.|| |
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecc
Confidence            3469999999999999876422 368999999996543  4456888889999998887766665 345678999999 5


Q ss_pred             cCCCCCCCeeEEEEEECcccCCCC-ceEEEEeccc
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLDLLK  370 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~~-~~~~~l~l~~  370 (548)
                      +.++.++.|+|.+.+-+.+|.... ....|+++..
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            666777789999999999998665 5556777653

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.79  E-value=0.0082  Score=60.51  Aligned_cols=102  Identities=16%  Similarity=0.268  Sum_probs=84.1

Q ss_pred             EEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCC------CCCeEEEEEEEccCCccCC
Q 008950          431 LSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP------LHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       431 L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~------~~~~l~v~V~d~~~~~~~~  504 (548)
                      +.|.|.+|++.+......-.+..++++....|..+.++..|.||....+.+....      ....|+++++.-+..  ..
T Consensus         2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~--~~   79 (340)
T PF12416_consen    2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS--TG   79 (340)
T ss_pred             EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC--CC
Confidence            5789999999998766778899999999999999999999999998998876421      234789999987732  45


Q ss_pred             CCcceEEEEEechhh---hcc--ceeceEEEeCCC
Q 008950          505 SKESLGHVEINLTDV---VHN--GRINEKYHLINS  534 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l---~~~--~~~~~w~~L~~~  534 (548)
                      ..+.+|.+.++|...   ..+  ....+||+|.+.
T Consensus        80 ~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~  114 (340)
T PF12416_consen   80 KRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS  114 (340)
T ss_pred             cceeccEEEEEccccccccccccccCCCeeEcccc
Confidence            679999999999998   443  355789999987

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.75  E-value=0.033  Score=49.38  Aligned_cols=119  Identities=19%  Similarity=0.298  Sum_probs=85.7

Q ss_pred             CCceEEEEEEeeeecCCC-----CCCCCc--EEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCC------------C
Q 008950          426 SGAGLLSVLVQGAEDVEG-----ENHNNP--YAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP------------L  486 (548)
Q Consensus       426 ~~~g~L~V~v~~a~~L~~-----~~~~dp--yv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~------------~  486 (548)
                      +....|+++|..++-.-.     .+..+.  ++-+.++++.++|+.+.-+.+|.|+|.|-|.+....            .
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            346789999998874321     123344  444556899999999999999999999999998753            1


Q ss_pred             CCeEEEEEEEccCCccCCCCcceEEEEEechhhhcccee--ceEEEeCCC------CCeEEEEEEEEEe
Q 008950          487 HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRI--NEKYHLINS------KRGVIHVDIRWKM  547 (548)
Q Consensus       487 ~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~--~~w~~L~~~------~~G~i~l~~~~~~  547 (548)
                      .+.+++-|.-.+.   .+...++|+-.++...++..+..  .-...|.+.      +.|-+.++++..|
T Consensus        86 ~~pihivli~~d~---~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP  151 (156)
T PF15627_consen   86 SDPIHIVLIRTDP---SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP  151 (156)
T ss_pred             CCceEEEEEEecC---CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence            3467888877664   34458999999999999987643  344555443      3688888887665

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=96.73  E-value=0.0011  Score=66.16  Aligned_cols=127  Identities=20%  Similarity=0.184  Sum_probs=91.6

Q ss_pred             cCCceEEEEEEEEecCccccCCCCCCCcEEEEEEc--CcccceeeeeeecCCCCCeeeceEEEEEecC-----------C
Q 008950          260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-----------E  326 (548)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~--~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-----------~  326 (548)
                      +.....|.+.|+++.+++...-....|-|+.+.+.  .......+|.++++|.+|.|+|.|.+.+..-           .
T Consensus       363 dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk  442 (523)
T KOG3837|consen  363 DLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK  442 (523)
T ss_pred             ccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence            34455677788888877654322335778887763  2222335899999999999999999988641           1


Q ss_pred             CCEEEEEEEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          327 SQILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       327 ~~~L~v~v~d~d~~-~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                      ...+.|++|+...+ .+|.++|.+.+.+..|...-.....+++...       .....|.|.+.++..
T Consensus       443 r~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  443 RLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIR  503 (523)
T ss_pred             hcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEe
Confidence            34689999998764 6788999999999999877666667776432       245678888888765

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.45  E-value=0.08  Score=47.52  Aligned_cols=89  Identities=25%  Similarity=0.267  Sum_probs=60.9

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccc-eeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEc
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW  337 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~  337 (548)
                      ..++|+|+++.++.-.+   .+|-||.+.+  +++... ...|+.+. ..++.|||...|++.  + +....|.|.+|+.
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            45789999999987643   4688888755  443321 12344333 367999999999874  2 2367899999997


Q ss_pred             CCCC----CCCeeEEEEEECccc
Q 008950          338 DKVG----GHDRLGMQLVPLKLL  356 (548)
Q Consensus       338 d~~~----~dd~lG~~~i~l~~l  356 (548)
                      ....    ....+|.+.++|-+-
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            6421    124699999998763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.13  E-value=0.29  Score=43.14  Aligned_cols=123  Identities=20%  Similarity=0.228  Sum_probs=80.1

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeee-cCCCCCeeeceEEEEEec--------CCCCEEEEE
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK-KKNLNPEWNENFKLVVKE--------PESQILQLQ  333 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~-~~t~nP~Wne~f~f~v~~--------~~~~~L~v~  333 (548)
                      .-.+.|+|++..+++..    ...-||+...+.......+|... ..+..-.|||.|.+.+.-        .....+.|.
T Consensus         6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            45678899999988862    23345555555433112334333 345557999999987641        124568899


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCC--CceEEEEeccccccCCCCCCCccccEEEEEEEEEeccc
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE  397 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~--~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~  397 (548)
                      |+....-++...+|.+.++|+++...  ......+++..        .......|++++.+.+..+
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~--------~~~~~a~L~isi~~~~~~~  139 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK--------CKKSNATLSISISLSELRE  139 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc--------CCCCCcEEEEEEEEEECcc
Confidence            99885333336999999999999875  45556666532        1356678999998887643

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.08  E-value=0.033  Score=49.98  Aligned_cols=90  Identities=19%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             eEEEEEEeeeecCCCCCCCCcEEEEEE--cCeE----EEeeeccCCCCCccCceEEEEc--cCCCCCCeEEEEEEEccCC
Q 008950          429 GLLSVLVQGAEDVEGENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFML--DEPPLHEKIHIEVMSKRTG  500 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~~~~dpyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v--~~~~~~~~l~v~V~d~~~~  500 (548)
                      ..++|+|+++.+++-....|-||++.+  +++.    ..|+.+.. .++.|||-.+|++  .+.+.+..|.|.||+....
T Consensus         8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~   86 (158)
T cd08398           8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR   86 (158)
T ss_pred             CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence            468899999999887666788888865  4433    24544443 7899999877755  4555667999999997532


Q ss_pred             cc-CCCCcceEEEEEechhh
Q 008950          501 IR-FWSKESLGHVEINLTDV  519 (548)
Q Consensus       501 ~~-~~~d~~lG~~~i~L~~l  519 (548)
                      .+ -.....+|.++++|-+-
T Consensus        87 ~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          87 KGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             cCCCCceEEEEEEEEEEECC
Confidence            00 01235799999999874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.97  E-value=0.11  Score=46.06  Aligned_cols=130  Identities=17%  Similarity=0.259  Sum_probs=90.5

Q ss_pred             cCCceEEEEEEEEecCccccCC--CCCCCcEE--EEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC---------
Q 008950          260 KKPVGILHVKVVRASKLLKKDF--LGTSDPYV--KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---------  326 (548)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~--~g~~dpyv--~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~---------  326 (548)
                      +...-.|.++|..++-....-.  .+..+.-.  -+.+++++   ++|+.+..+.+|.|+|.|-|.+....         
T Consensus         5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~   81 (156)
T PF15627_consen    5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATT   81 (156)
T ss_pred             CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhH
Confidence            3445678999998875543211  13444444  44556666   58899999999999999999986432         


Q ss_pred             ----CCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce--EEEEeccccccCCCCCCCccccEEEEEEEEEecc
Q 008950          327 ----SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK--EFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK  396 (548)
Q Consensus       327 ----~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~--~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  396 (548)
                          .+.+.+.|...|..+...++|+-.++-+.+......  ....++....    ...+...|-|.++++..|..
T Consensus        82 lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~----~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen   82 LLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG----PESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             hhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC----CCCccceeEEEEEEEeecCC
Confidence                356788888887776668999999998888766544  5566653321    12245789999999999863

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.77  E-value=0.017  Score=63.13  Aligned_cols=90  Identities=22%  Similarity=0.344  Sum_probs=68.2

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc----cceeeeeeec-CCCCCeeec-eEEEE-EecCCCCEEEEEEE
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKK-KNLNPEWNE-NFKLV-VKEPESQILQLQVF  335 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~-~t~nP~Wne-~f~f~-v~~~~~~~L~v~v~  335 (548)
                      .+.+.|+|+++.-|..++    ...||.|.+-+-.    .+.++|++.. ++.||+|+| .|.|. |--+.-..|+|.||
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            457889999999998764    4589999985421    1345676654 899999995 56664 33345568999999


Q ss_pred             EcCCCCCCCeeEEEEEECcccCCCC
Q 008950          336 DWDKVGGHDRLGMQLVPLKLLTPHE  360 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~l~~~~  360 (548)
                      +.+    .+++|+-.+|+..+..|-
T Consensus       778 eEg----gK~ig~RIlpvd~l~~GY  798 (1189)
T KOG1265|consen  778 EEG----GKFIGQRILPVDGLNAGY  798 (1189)
T ss_pred             ccC----CceeeeeccchhcccCcc
Confidence            975    469999999999999873

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.69  E-value=0.25  Score=43.55  Aligned_cols=116  Identities=17%  Similarity=0.241  Sum_probs=78.5

Q ss_pred             eEEEEEEeeeecCCCCCCCCcEEEEEEcCeE---EEeeecc-CCCCCccCceEEEEccCCC-------CCCeEEEEEEEc
Q 008950          429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDK---KRTKMIR-KTRDPAWNEEFQFMLDEPP-------LHEKIHIEVMSK  497 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~---~kT~v~~-~t~nP~wne~f~f~v~~~~-------~~~~l~v~V~d~  497 (548)
                      -.+.+++++..+++. ....-||+...++..   .+|.... ....-.|||.|.+.+.-..       ....+.+.|+..
T Consensus         7 f~~~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~   85 (143)
T PF10358_consen    7 FQFDLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEV   85 (143)
T ss_pred             EEEEEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEe
Confidence            457788999999887 233445555555543   3444333 4555679999999875321       112678888887


Q ss_pred             cCCccCCCCcceEEEEEechhhhcc--ceeceEEEeCCC--CCeEEEEEEEEEeC
Q 008950          498 RTGIRFWSKESLGHVEINLTDVVHN--GRINEKYHLINS--KRGVIHVDIRWKMI  548 (548)
Q Consensus       498 ~~~~~~~~d~~lG~~~i~L~~l~~~--~~~~~w~~L~~~--~~G~i~l~~~~~~~  548 (548)
                      ..   -+....+|.+.|+|++....  ......++|..+  .+..+++++++.++
T Consensus        86 ~~---~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~  137 (143)
T PF10358_consen   86 DG---SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSEL  137 (143)
T ss_pred             cC---CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEEC
Confidence            32   12236999999999999884  456778999876  36888888888764

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.66  E-value=0.077  Score=48.53  Aligned_cols=91  Identities=14%  Similarity=0.247  Sum_probs=64.5

Q ss_pred             eEEEEEEeeeecCCC-CCCCCcEEEEEE--cCeE----EEeeeccCCCCCccCceEEEEc--cCCCCCCeEEEEEEEccC
Q 008950          429 GLLSVLVQGAEDVEG-ENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFML--DEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       429 g~L~V~v~~a~~L~~-~~~~dpyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v--~~~~~~~~l~v~V~d~~~  499 (548)
                      ..++|+++++.++.. ....+-||++.+  |++.    ..|+.+....++.|||.++|.+  .+.+.+..|.|.||+...
T Consensus         8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~   87 (173)
T cd08693           8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK   87 (173)
T ss_pred             CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence            458899999999986 446777888644  5543    3666555567899999888855  455667799999998653


Q ss_pred             Ccc-------------CCCCcceEEEEEechhh
Q 008950          500 GIR-------------FWSKESLGHVEINLTDV  519 (548)
Q Consensus       500 ~~~-------------~~~d~~lG~~~i~L~~l  519 (548)
                      ...             -+.+..||.++++|-+-
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          88 KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             cccccccccccccccccCcceEEEEEeEEEEcc
Confidence            100             11257999999999774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.37  E-value=0.11  Score=47.57  Aligned_cols=90  Identities=19%  Similarity=0.249  Sum_probs=60.0

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccc-eeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEc
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW  337 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~  337 (548)
                      ..++|+|+++.++...+  ...+-||.+.+  |++... ...|+.+..+.++.|||...|++.  + |....|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            35789999999998622  34667777644  544331 234555554577999999999764  2 3467899999997


Q ss_pred             CCCC----------------CCCeeEEEEEECcc
Q 008950          338 DKVG----------------GHDRLGMQLVPLKL  355 (548)
Q Consensus       338 d~~~----------------~dd~lG~~~i~l~~  355 (548)
                      ....                .+..||.+.++|-+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEc
Confidence            5422                13477777777655

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.31  E-value=0.11  Score=46.78  Aligned_cols=93  Identities=25%  Similarity=0.299  Sum_probs=60.9

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEE--cCccc-ceeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEc
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKL-PWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW  337 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~  337 (548)
                      ..++|++.+..+....+ ....+-||.+.+  |++.. ....|.......++.|||...|.+.  + +....|.+.+|+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            35678888888876521 234566777654  44322 1223433333478999999999864  2 3367899999998


Q ss_pred             CCCC--CCCeeEEEEEECcccC
Q 008950          338 DKVG--GHDRLGMQLVPLKLLT  357 (548)
Q Consensus       338 d~~~--~dd~lG~~~i~l~~l~  357 (548)
                      +..+  .+..||.+.++|-+-.
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEccc
Confidence            7544  4578999999887643

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=95.07  E-value=0.051  Score=52.68  Aligned_cols=118  Identities=20%  Similarity=0.244  Sum_probs=78.9

Q ss_pred             cCCceEEEEEEEEecCccccCC--CCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEc
Q 008950          260 KKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW  337 (548)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~  337 (548)
                      ....|+|.+++.++|+|+-...  .-.-+-||++..+.+.  ..+|.+.....-=.|.|+|+..+.+  ...+.+-||.|
T Consensus        47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW  122 (442)
T KOG1452|consen   47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSW  122 (442)
T ss_pred             ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEeec
Confidence            3457999999999999975432  3346889999988654  3567776666667899999998865  35788999999


Q ss_pred             CCCCCCCeeEEEEEECcccCCC-CceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          338 DKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       338 d~~~~dd~lG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                      +.-.++++.-...+.+..+... ..+.+.+.+            .++|++.+++.+.
T Consensus       123 ~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~l------------ePrgq~~~r~~~~  167 (442)
T KOG1452|consen  123 PPQRRHKLCHLGLLEAFVVDRQSPDRVVALYL------------EPRGQPPLRLPLA  167 (442)
T ss_pred             CchhhccccccchhhhhhhhhcCCcceeeeec------------ccCCCCceecccC
Confidence            8766666533333444443332 233333332            4677777777554

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=94.91  E-value=0.27  Score=39.07  Aligned_cols=86  Identities=27%  Similarity=0.381  Sum_probs=60.9

Q ss_pred             CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce
Q 008950          283 GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK  362 (548)
Q Consensus       283 g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~  362 (548)
                      |.++-.+.+.+++..+  .+|.-+ ...+..|++.|.+.+.  .+..|+|.||-+|-   ..+-|...+.|++...    
T Consensus         7 ~~~eV~avLklDn~~V--gqT~Wk-~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~~~----   74 (98)
T cd08687           7 GCSEVSAVLKLDNTVV--GQTQWK-PKSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDERH----   74 (98)
T ss_pred             cccceEEEEEEcCeEE--eecccc-ccccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhhcc----
Confidence            3468889999987654  466553 3457899999999996  46799999998874   3466777777777322    


Q ss_pred             EEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          363 EFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       363 ~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      ...++            -.+.|.+..+++|
T Consensus        75 ~~~~~------------lepqg~l~~ev~f   92 (98)
T cd08687          75 EVQLD------------MEPQLCLVAELTF   92 (98)
T ss_pred             cceec------------cccccEEEEEEEe
Confidence            22222            3567888888887

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=94.58  E-value=0.072  Score=58.49  Aligned_cols=89  Identities=19%  Similarity=0.230  Sum_probs=69.0

Q ss_pred             CceEEEEEEeeeecCCCCCCCCcEEEEEEcC-------eEEEeeecc-CCCCCccCc-eEEEEccCCCCCCeEEEEEEEc
Q 008950          427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG-------DKKRTKMIR-KTRDPAWNE-EFQFMLDEPPLHEKIHIEVMSK  497 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~-------~~~kT~v~~-~t~nP~wne-~f~f~v~~~~~~~~l~v~V~d~  497 (548)
                      .++.+.|+|++++=|..+ ....||.|.+-|       +.++|+++. ++.||+|+| .|.|.---.+.-..|.|.|+++
T Consensus       701 IA~t~sV~VISgqFLSdr-kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE  779 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDR-KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE  779 (1189)
T ss_pred             EEeeEEEEEEeeeecccc-ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence            567799999999888664 456999999865       335888776 699999996 6888644433446899999998


Q ss_pred             cCCccCCCCcceEEEEEechhhhccc
Q 008950          498 RTGIRFWSKESLGHVEINLTDVVHNG  523 (548)
Q Consensus       498 ~~~~~~~~d~~lG~~~i~L~~l~~~~  523 (548)
                      ..       .++|+=.+|++.+-.+-
T Consensus       780 gg-------K~ig~RIlpvd~l~~GY  798 (1189)
T KOG1265|consen  780 GG-------KFIGQRILPVDGLNAGY  798 (1189)
T ss_pred             CC-------ceeeeeccchhcccCcc
Confidence            64       79999999998876543

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.30  E-value=0.22  Score=44.77  Aligned_cols=90  Identities=18%  Similarity=0.297  Sum_probs=61.4

Q ss_pred             eEEEEEEeeeecCCC--CCCCCcEEEEEE--cCeE----EEeeeccCCCCCccCceEEEEc--cCCCCCCeEEEEEEEcc
Q 008950          429 GLLSVLVQGAEDVEG--ENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFML--DEPPLHEKIHIEVMSKR  498 (548)
Q Consensus       429 g~L~V~v~~a~~L~~--~~~~dpyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v--~~~~~~~~l~v~V~d~~  498 (548)
                      ..++|.++++.+...  ....+-||++.+  +++.    ..|.......++.|||..+|.+  .+.+.+..|.+.||+..
T Consensus         8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            356778888877754  334666777754  4432    2444444447899999888874  45566779999999976


Q ss_pred             CCccCCCCcceEEEEEechhh
Q 008950          499 TGIRFWSKESLGHVEINLTDV  519 (548)
Q Consensus       499 ~~~~~~~d~~lG~~~i~L~~l  519 (548)
                      .. +...+..||.++++|-+-
T Consensus        88 ~~-~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EP-GSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cC-CCCcceEEEEEeEEeEcc
Confidence            42 012468999999999874

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.19  E-value=0.21  Score=45.60  Aligned_cols=93  Identities=23%  Similarity=0.252  Sum_probs=62.5

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccce-eeeeeec----CCCCCeeeceEEEEEe--c-CCCCEEEEE
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKK----KNLNPEWNENFKLVVK--E-PESQILQLQ  333 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~-~~T~v~~----~t~nP~Wne~f~f~v~--~-~~~~~L~v~  333 (548)
                      ..+.|+|.++.+++........|-|+.+.+  |++.... ..|+...    -...+.|||...|.+.  + +....|.|.
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            567899999999988764445788888755  4443311 1333211    1235779999988874  2 336789999


Q ss_pred             EEEcCCCC---------CCCeeEEEEEECccc
Q 008950          334 VFDWDKVG---------GHDRLGMQLVPLKLL  356 (548)
Q Consensus       334 v~d~d~~~---------~dd~lG~~~i~l~~l  356 (548)
                      +|+....+         .+..||.+.++|-+-
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            99976543         346889888887653

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.25  E-value=0.58  Score=42.80  Aligned_cols=73  Identities=18%  Similarity=0.246  Sum_probs=45.9

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccceeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEcC
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD  338 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d  338 (548)
                      .++|+|.++.++. .+......-||++.+  |+......+|+...-+.+|.|||...|.+.  + +....|.|.||+..
T Consensus        11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            4678888887432 222222335665533  443332335666666778999999888874  2 23678999999974

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.15  E-value=0.25  Score=44.48  Aligned_cols=71  Identities=13%  Similarity=0.218  Sum_probs=51.4

Q ss_pred             CCCcEEEEEE--cCeE----EEeeeccCCCCCccCceEEEEcc--CCCCCCeEEEEEEEccCCccCCCCcceEEEEEech
Q 008950          446 HNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLT  517 (548)
Q Consensus       446 ~~dpyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~  517 (548)
                      .+|-||++.+  +++.    ..|+.+.-+..+.|||-.+|++.  +.+.+..|.|+||+...   .+....+|.++++|-
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~---~~~~~~vg~~~~~lF  105 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG---TGKAVPFGGTTLSLF  105 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC---CCCceEEEEEEEeeE
Confidence            4677888755  4432    25666666777899997777764  55566799999999764   235679999999998


Q ss_pred             hh
Q 008950          518 DV  519 (548)
Q Consensus       518 ~l  519 (548)
                      +-
T Consensus       106 d~  107 (159)
T cd08397         106 NK  107 (159)
T ss_pred             CC
Confidence            75

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.00  E-value=0.32  Score=43.75  Aligned_cols=74  Identities=24%  Similarity=0.338  Sum_probs=52.0

Q ss_pred             CCCCcEEEEEE--cCcccc-eeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEcCCCCCCCeeEEEEEECccc
Q 008950          283 GTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGHDRLGMQLVPLKLL  356 (548)
Q Consensus       283 g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l  356 (548)
                      ..+|-||.+.+  ++.... ..+|+.+.-+..+.|||...|++.  + +....|.|.|||.+..++...+|.++++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            35677888765  333221 125555555677899999999875  2 23678999999987655677999999988764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=92.83  E-value=0.6  Score=41.14  Aligned_cols=65  Identities=22%  Similarity=0.286  Sum_probs=44.4

Q ss_pred             EEcCcccc--eeeeeeecCC-CCCeeeceEEEEEe--c-CCCCEEEEEEEEcCCCCCC----CeeEEEEEECccc
Q 008950          292 SLTGEKLP--WKKTTVKKKN-LNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGH----DRLGMQLVPLKLL  356 (548)
Q Consensus       292 ~l~~~~~~--~~~T~v~~~t-~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d~~~~d----d~lG~~~i~l~~l  356 (548)
                      +.|++...  ...|+...-+ .++.|||...|.+.  + |....|.|.||+.+....+    ..||.+.++|-+.
T Consensus        11 y~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   11 YHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             EETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             EECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            33554432  2356655555 79999999999875  2 3467899999998765544    6899999988765

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=92.72  E-value=1.6  Score=34.85  Aligned_cols=83  Identities=14%  Similarity=0.228  Sum_probs=56.8

Q ss_pred             CCcEEEEEEcCeEE-EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhcccee
Q 008950          447 NNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRI  525 (548)
Q Consensus       447 ~dpyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~  525 (548)
                      .+..+.+.+.+... .|.-. ...+..|++.|.+.+..   ...|.|.|+-+|-+      .+-|-.-+.|.+...    
T Consensus         9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdR---sRELEI~VywrD~R------slCav~~lrLEd~~~----   74 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELER---SRELEIAVYWRDWR------SLCAVKFLKLEDERH----   74 (98)
T ss_pred             cceEEEEEEcCeEEeecccc-ccccccccceeEEEeec---ccEEEEEEEEecch------hhhhheeeEhhhhcc----
Confidence            56677788877554 55443 34678899999998865   46899999988743      566777788887332    


Q ss_pred             ceEEEeCCCCCeEEEEEEEE
Q 008950          526 NEKYHLINSKRGVIHVDIRW  545 (548)
Q Consensus       526 ~~w~~L~~~~~G~i~l~~~~  545 (548)
                        ...+.-.++|.+..++.|
T Consensus        75 --~~~~~lepqg~l~~ev~f   92 (98)
T cd08687          75 --EVQLDMEPQLCLVAELTF   92 (98)
T ss_pred             --cceeccccccEEEEEEEe
Confidence              233334467887777765

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=92.49  E-value=2.3  Score=38.62  Aligned_cols=71  Identities=17%  Similarity=0.307  Sum_probs=53.4

Q ss_pred             CCCcEEEEEEcCcccceeeeeeec--CCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCC
Q 008950          284 TSDPYVKLSLTGEKLPWKKTTVKK--KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP  358 (548)
Q Consensus       284 ~~dpyv~v~l~~~~~~~~~T~v~~--~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~  358 (548)
                      +..-|+++.++++.+  .+|+...  ....-.+||.|.+.+... -..|.++||.... ..+..|+++.+|+-....
T Consensus        36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~  108 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV  108 (168)
T ss_pred             heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence            456799999998765  4555433  333356789999999763 4689999999886 678899999999865543

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.84  E-value=0.8  Score=41.91  Aligned_cols=91  Identities=14%  Similarity=0.132  Sum_probs=57.7

Q ss_pred             eEEEEEEeeeecCCCCC--CCCcEEEEEE--cCeE---EEeeeccCCCCCccCceEEEEcc--CCCCCCeEEEEEEEccC
Q 008950          429 GLLSVLVQGAEDVEGEN--HNNPYAIILY--KGDK---KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~~--~~dpyv~v~l--~~~~---~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~  499 (548)
                      ..++++|+++.++....  ...-||++.+  ++..   .+|+...-+.++.|||-.+|.+.  +.+.+..|.+.||+...
T Consensus        10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            35677888887443322  2345666643  3332   25666666778999997777654  45556799999998632


Q ss_pred             Cc----cC---------CCCcceEEEEEechhh
Q 008950          500 GI----RF---------WSKESLGHVEINLTDV  519 (548)
Q Consensus       500 ~~----~~---------~~d~~lG~~~i~L~~l  519 (548)
                      ..    .+         ..+..||.+++.|-+-
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcC
Confidence            10    01         1257899999999774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=91.57  E-value=2.3  Score=38.61  Aligned_cols=69  Identities=20%  Similarity=0.269  Sum_probs=51.8

Q ss_pred             CCCcEEEEEEcCeEE-EeeeccC--CCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhh
Q 008950          446 HNNPYAIILYKGDKK-RTKMIRK--TRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVV  520 (548)
Q Consensus       446 ~~dpyv~v~l~~~~~-kT~v~~~--t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~  520 (548)
                      ...-|+++.++++.. +|+...=  ...=.|||.|.+.+...|  ++|.++||...    ...+..|+.+.+++-...
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P--esi~l~i~E~~----~~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP--ESIKLEIYEKS----GLSDRLLAEVFVPVPGST  107 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC--CEEEEEEEEcc----CccceEEEEEEeeCCCCc
Confidence            356699999999775 5554332  333458999999998864  68999999986    257899999999986543

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=90.10  E-value=3.4  Score=38.07  Aligned_cols=57  Identities=23%  Similarity=0.345  Sum_probs=41.9

Q ss_pred             cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEEcCCCCC--CCeeEEEEEECc
Q 008950          298 LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGG--HDRLGMQLVPLK  354 (548)
Q Consensus       298 ~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~--dd~lG~~~i~l~  354 (548)
                      ...++|.|...+.+|.|+|++.+.+...  ....|.|++++.....+  ...+|.+-+||-
T Consensus        52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            3346888999999999999999988632  35678888887543211  257888888873

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.96  E-value=1.2  Score=40.64  Aligned_cols=91  Identities=21%  Similarity=0.295  Sum_probs=61.5

Q ss_pred             ceEEEEEEeeeecCCCC---CCCCcEEEEEE--cCeE----EEeeecc----CCCCCccCceEEEEcc--CCCCCCeEEE
Q 008950          428 AGLLSVLVQGAEDVEGE---NHNNPYAIILY--KGDK----KRTKMIR----KTRDPAWNEEFQFMLD--EPPLHEKIHI  492 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~---~~~dpyv~v~l--~~~~----~kT~v~~----~t~nP~wne~f~f~v~--~~~~~~~l~v  492 (548)
                      ...+.++|.++.+++..   ...|-||++.+  +++.    ..|+...    -...+.|||-.+|.+.  +.+.+..|.+
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            45688999999999863   24778888755  4443    2444322    1335779997777664  4455669999


Q ss_pred             EEEEccCCccC-------CCCcceEEEEEechhh
Q 008950          493 EVMSKRTGIRF-------WSKESLGHVEINLTDV  519 (548)
Q Consensus       493 ~V~d~~~~~~~-------~~d~~lG~~~i~L~~l  519 (548)
                      .+|+.... +.       ..+..||.++++|-+-
T Consensus        87 tl~~~~~~-~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSS-PDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecC-CccccccccccceEEEEEeEeeEcc
Confidence            99987532 00       1357999999999774

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=89.59  E-value=2.3  Score=37.44  Aligned_cols=56  Identities=20%  Similarity=0.378  Sum_probs=39.9

Q ss_pred             EeeeccCC-CCCccCceEEEE--ccCCCCCCeEEEEEEEccCCccCCCC----cceEEEEEechhh
Q 008950          461 RTKMIRKT-RDPAWNEEFQFM--LDEPPLHEKIHIEVMSKRTGIRFWSK----ESLGHVEINLTDV  519 (548)
Q Consensus       461 kT~v~~~t-~nP~wne~f~f~--v~~~~~~~~l~v~V~d~~~~~~~~~d----~~lG~~~i~L~~l  519 (548)
                      .|+....+ .++.|||..+|.  +.+.+.+..|.+.|+..+..   ..+    ..||.++++|-+-
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~---~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK---KKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS---TTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC---CccccceeEEEEEEEEeECC
Confidence            56666655 799999977766  55666778999999997642   222    6999999999876

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=88.69  E-value=4.7  Score=37.21  Aligned_cols=56  Identities=18%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             eeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEEcCCCCCC---CeeEEEEEECcc
Q 008950          300 WKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGH---DRLGMQLVPLKL  355 (548)
Q Consensus       300 ~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~d---d~lG~~~i~l~~  355 (548)
                      ...|.+..++.+|.|+|+|.+.+...  ....|.|++++...-.+.   ..+|.+.+||-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            45788888999999999999988643  356799999987643222   689999999887

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=88.49  E-value=5.4  Score=36.94  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=41.9

Q ss_pred             ceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEEEEcCCC-CCC---CeeEEEEEECc
Q 008950          299 PWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKV-GGH---DRLGMQLVPLK  354 (548)
Q Consensus       299 ~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~d~d~~-~~d---d~lG~~~i~l~  354 (548)
                      ...+|.|.....+|.|+|++.+.+..  .....|.|++++.... .+|   ...|.+.+||-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            44688888899999999999988863  2466799999886421 122   47898888884

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=86.58  E-value=1.5  Score=42.88  Aligned_cols=114  Identities=18%  Similarity=0.162  Sum_probs=72.9

Q ss_pred             CCceEEEEEEeeeecCCC----CC-CCCcEEEEEEcCeEE-EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950          426 SGAGLLSVLVQGAEDVEG----EN-HNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       426 ~~~g~L~V~v~~a~~L~~----~~-~~dpyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~  499 (548)
                      ..+|+|.+++..+++|.-    +| .-+-|+.+....+.+ +|.+.....--.|.|.|+..+.+.   +.+++-|+.++.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~---~vl~~lvySW~p  124 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI---EVLHYLVYSWPP  124 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc---eeeeEEEeecCc
Confidence            357999999999999853    12 456788888755433 566554455556889999987753   568888888764


Q ss_pred             CccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEE
Q 008950          500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWK  546 (548)
Q Consensus       500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~  546 (548)
                      . .-++=+.+|  -+.+..+.. ..-++.+-|.-.+.|++.+++.+.
T Consensus       125 q-~RHKLC~~g--~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~~  167 (442)
T KOG1452|consen  125 Q-RRHKLCHLG--LLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPLA  167 (442)
T ss_pred             h-hhccccccc--hhhhhhhhh-cCCcceeeeecccCCCCceecccC
Confidence            3 012224456  233333332 223456777666788888877653

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=86.07  E-value=4.3  Score=33.31  Aligned_cols=73  Identities=21%  Similarity=0.265  Sum_probs=46.8

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEE--cCcccc-eeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEcC
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD  338 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d  338 (548)
                      +.+++..+.+.........+|-||.+.+  |++... ...|+.+.-...+.|||...|++.  + +....|.+.+|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            5566677766655433233578888755  443331 124555555666999999988764  2 34678999999965

Outlier of C2 family.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=84.05  E-value=4.6  Score=37.24  Aligned_cols=60  Identities=12%  Similarity=0.169  Sum_probs=34.7

Q ss_pred             EEEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCccCCCCcceEEEEEechh
Q 008950          459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGIRFWSKESLGHVEINLTD  518 (548)
Q Consensus       459 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~  518 (548)
                      ...|.+.+++.+|.|+|+|.+.++..... ..|.+++++...+.+...+..+|.+-++|-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            35888999999999999999999875322 3788888886543111112799999999987

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=81.38  E-value=29  Score=31.99  Aligned_cols=107  Identities=14%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             hhcccCCceeeeeccccccccccCCce-EEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCee
Q 008950          238 AGIYIWPQTYEIPILDASSVAIKKPVG-ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEW  314 (548)
Q Consensus       238 ~~~~v~P~~~~~~l~~~~~~~~~~~~g-~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~W  314 (548)
                      ...+|+|..+.+.-...    ...+.+ .++|.+.+..+-       ...|.-.++.+...  .....|.|...+.+|.|
T Consensus         3 N~LYVYP~~l~~~~~k~----~~kaRNI~V~V~lrd~D~~-------~~~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f   71 (185)
T cd08697           3 NHLYVYPLHLKYDSQKT----FAKARNIAVCIEFRDSDEE-------DAKPLKCIYYGPGGGFTTSAYAAVLHHNQNPEF   71 (185)
T ss_pred             ceEEEcccEEEeccccc----ccccccEEEEEEEEeCCCC-------cCccceEEecCCCCCcceEEEEEEEEcCCCCcc
Confidence            34678888877653211    112222 255666555331       11222223333221  23467888889999999


Q ss_pred             eceEEEEEecC--CCCEEEEEEEEcCCC--C-------CCCeeEEEEEECcc
Q 008950          315 NENFKLVVKEP--ESQILQLQVFDWDKV--G-------GHDRLGMQLVPLKL  355 (548)
Q Consensus       315 ne~f~f~v~~~--~~~~L~v~v~d~d~~--~-------~dd~lG~~~i~l~~  355 (548)
                      +|++.+.+.-.  ....|.|+.|+.+..  .       ....+|-+.+||-.
T Consensus        72 ~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          72 YDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             ceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            99998887532  356799999986521  1       12457887777755

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=80.05  E-value=9.4  Score=31.79  Aligned_cols=84  Identities=15%  Similarity=0.128  Sum_probs=45.1

Q ss_pred             eeeeeecCCCCCeeeceEEEEEecC-------CCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCc--eEEEEecccc
Q 008950          301 KKTTVKKKNLNPEWNENFKLVVKEP-------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHET--KEFTLDLLKH  371 (548)
Q Consensus       301 ~~T~v~~~t~nP~Wne~f~f~v~~~-------~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~--~~~~l~l~~~  371 (548)
                      ..|.++. +.||.+|-+-.|.|...       .+..+.++++..- ....+.+|.+.+++..+.+...  ......+...
T Consensus        13 q~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g~   90 (107)
T PF11618_consen   13 QTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNGERIHGSATLVGV   90 (107)
T ss_dssp             EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S--EEEEEEE-BS
T ss_pred             eccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCceEEEEEEEecc
Confidence            4677765 88999998888888632       2568999999976 2345789999999999985543  2233343221


Q ss_pred             ccCCCCCCCccccEEEEEEEEE
Q 008950          372 TNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       372 ~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                             ++..-|.|.+.++..
T Consensus        91 -------~~~~~g~l~y~~rl~  105 (107)
T PF11618_consen   91 -------SGEDFGTLEYWIRLR  105 (107)
T ss_dssp             -------SS-TSEEEEEEEEEE
T ss_pred             -------CCCeEEEEEEEEEec
Confidence                   234778888877653

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	548
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		3e-07
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		7e-07
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		3e-06
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		5e-06
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		6e-06
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-05
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		4e-05
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		4e-04
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		5e-04
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		7e-04
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		7e-04

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 61/142 (42%), Gaps = 20/142 (14%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEXXXXXXXXXXXXXXXXEWNENFKL 320
           IL VKVV    L KKD  G SDPYVKLSL                       +WNE F  
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL--------TPHETKEFTLDLLKHT 372
            V  P +  L  +VFD +++   D LG   VPL  L         P+  K+F L    H 
Sbjct: 82  RVN-PSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHK 140
Query: 373 NISDPKDMKQRGKIVVELTYVP 394
           +       + +G + +++ Y+P
Sbjct: 141 S-------RVKGFLRLKMAYMP 155

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWN 315
           SV        L VK+++A +L  KDF GTSDP+VK+ L  +                 WN
Sbjct: 18  SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 316 ENF---KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
           E F       ++   +IL LQV D+D+   +D +G   +PL  +   + + F  DL
Sbjct: 78  ETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL---TGEXXXXXXXXXXXXXXXXEWNENFKLV 321
           I+ V+V+    L KKD LG SDPYV+++L                      +WNE     
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPL--------KLLTPHETKEFTLDLLKHTN 373
           V  P+   L  +VFD +++   D LG   VPL        +L  P+  K+F L    H +
Sbjct: 81  V-HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS 139
Query: 374 ISDPKDMKQRGKIVVELTYVP 394
                  + +G + +++TY+P
Sbjct: 140 -------RVKGYLRLKMTYLP 153

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKL 320
           K VGIL VKV++A+ LL  DF G SDP+  L L  +                EWN+ F  
Sbjct: 10  KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGND---RLQTHTVYKNLNPEWNKVFTF 66
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
            +K+    +L++ VFD D     D LG   +PL
Sbjct: 67  PIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPL 98

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLV 321
           P G L V +V A  L   DFL   DPYV+  LT                  EWNE F   
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQ--LTCRTQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
           V E  ++ L+ ++FD D     D +G   +PL+ +       F    +  T  +  KD +
Sbjct: 66  VSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPV-------FVEGSIPPTAYNVVKDEE 117
Query: 382 QRGKIVVELTYVP 394
            +G+I V L++ P
Sbjct: 118 YKGEIWVALSFKP 130

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXX---XXXXXXXXXXXXXXEWNENFKLV 321
           ++ VKV+    L KKD LG SDPYV+++L                      +WNE     
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPL--------KLLTPHETKEFTLDLLKHTN 373
           V  P+   +  +VFD +++   D LG   VPL        ++  P+  K+F L    H +
Sbjct: 69  VL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS 127
Query: 374 ISDPKDMKQRGKIVVELTYVP 394
                  + +G + +++TY+P
Sbjct: 128 -------RVKGYLRLKMTYLP 141

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVV--K 323
           L V +++A++L   D  GTSDPYVK+ L  +                 +NE F   V   
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQ 382
           E   + L + V+D+D+   HD +G   VP+  +   H T+E+     +    ++ ++ ++
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEW-----RDLQSAEKEEQEK 135
Query: 383 RGKIVVELTYVP 394
            G I   L YVP
Sbjct: 136 LGDICFSLRYVP 147

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXX--EWNENFKLVVK 323
           LHV V  A  L+  D  G SDPYVKL L  +                  +WNE+F   +K
Sbjct: 18  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 324 EPE-SQILQLQVFDWDKVGGHDRLG 347
             +  + L ++++DWD+   +D +G
Sbjct: 78  PSDKDRRLSVEIWDWDRTTRNDFMG 102

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXX--EWNENFKLVVK 323
           LHV V  A  L+  D  G SDPYVKL L  +                  +WNE+F   +K
Sbjct: 19  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 324 EPE-SQILQLQVFDWDKVGGHDRLG 347
             +  + L ++++DWD+   +D +G
Sbjct: 79  PSDKDRRLSVEIWDWDRTTRNDFMG 103

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEXXXXXXXXXXXXXXXXEWNEN--F 318
            G+L V +++AS L   D  G SDPYVK SL   G                  +NE   F
Sbjct: 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
            +  +  E+  L + V D+D +G ++ +G+  V  +   PH
Sbjct: 211 DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 251

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEXXXXXXXXXXXXXXXXEWNEN--F 318
            G+L V +++AS L   D  G SDPYVK SL   G                  +NE   F
Sbjct: 152 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 211
Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
            +  +  E+  L + V D+D +G ++ +G+  V  +   PH
Sbjct: 212 DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 252

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	548
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-46
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	4e-08
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	5e-42
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-09
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	8e-42
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-20
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	7e-07
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-41
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-16
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-41
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-14
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	6e-41
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	6e-11
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	7e-40
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	6e-14
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	4e-35
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	4e-12
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-33
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-13
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-33
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	5e-09
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	6e-33
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-10
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	1e-31
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	9e-16
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-30
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-09
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-30
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	8e-11
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-29
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	5e-11
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-28
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-11
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	5e-28
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	9e-08
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	3e-27
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	4e-11
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	4e-26
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-13
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	4e-26
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-10
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-24
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	3e-08
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-24
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	5e-10
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	7e-24
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	3e-10
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-23
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	8e-09
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-22
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	5e-10
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	2e-22
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-09
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	3e-22
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	7e-10
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	1e-21
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	3e-08
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-21
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-08
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	7e-21
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-09
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-20
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-09
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-20
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-07
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-20
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-07
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	3e-20
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	4e-09
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	5e-20
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-08
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-19
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-07
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	3e-19
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	3e-10
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	7e-15
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	3e-10
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	6e-10
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-08
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	3e-09
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	6e-08
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	2e-04
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	7e-08
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-06
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	8e-04

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  163 bits (413), Expect = 3e-46
 Identities = 64/264 (24%), Positives = 114/264 (43%), Gaps = 50/264 (18%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
             L V +++A++L   D  GTSDPYVK+ L  +K    +T V +K LNP +NE   FK+ 
Sbjct: 19  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78

Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
             E   + L + V+D+D+   HD +G   VP+  +      E   DL       + ++ +
Sbjct: 79  YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA----EKEEQE 134

Query: 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAED- 440
           + G I   L YVP                                 AG L+V++  A++ 
Sbjct: 135 KLGDICFSLRYVP--------------------------------TAGKLTVVILEAKNL 162

Query: 441 --VEGENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEK-IHI 492
             ++    ++PY  I    +     KK+T + + T +P +NE F F +    + +  + +
Sbjct: 163 KKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVV 222

Query: 493 EVMSKRTGIRFWSKESLGHVEINL 516
            V+      +    +++G V +  
Sbjct: 223 TVLDYD---KIGKNDAIGKVFVGY 243

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 16/131 (12%)

Query: 428 AGLLSVLVQGAEDVEGENHN---NPYA---IILYKGDKKRTKMIRKTRDPAWNEEFQFML 481
              L V +  A ++   +     +PY    ++  K  K  TK+ RKT +P +NE+F F +
Sbjct: 18  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77

Query: 482 DEPPLHEK-IHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI------NS 534
               L  K + + V       RF   + +G  ++ +  V       E   L         
Sbjct: 78  PYSELAGKTLVMAVYDFD---RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134

Query: 535 KRGVIHVDIRW 545
           K G I   +R+
Sbjct: 135 KLGDICFSLRY 145

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  147 bits (373), Expect = 5e-42
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 5/170 (2%)

Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKNLNPEWNE 316
                ++ VKV+    L KKD LG SDPYV+++L           +T   KK+LNP+WNE
Sbjct: 4   NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE 63

Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
                V  P+   +  +VFD +++   D LG   VPL  L     +       K   +  
Sbjct: 64  EILFRVL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP 122

Query: 377 P-KDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEAL 425
                + +G + +++TY+P      + +  +++        DQ      L
Sbjct: 123 RSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATHL 172

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 25/138 (18%)

Query: 429 GLLSVLVQGAEDVEGENHNN---PYAII------LYKGDKKRTKMIRKTRDPAWNEEFQF 479
            ++ V V     +  ++      PY  +             +TK I+K+ +P WNEE  F
Sbjct: 8   RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67

Query: 480 MLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI------- 532
            +   P   +I  EV  +    R    + LG V++ L  +       E+ +         
Sbjct: 68  RV--LPQRHRILFEVFDEN---RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP 122

Query: 533 ----NSKRGVIHVDIRWK 546
               +  +G + + + + 
Sbjct: 123 RSHKSRVKGYLRLKMTYL 140

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  151 bits (382), Expect = 8e-42
 Identities = 61/274 (22%), Positives = 108/274 (39%), Gaps = 53/274 (19%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
             L V++++A  L  KD  G SDPYVK+ L  ++    +T V +K LNP +NE F+  V 
Sbjct: 20  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 79

Query: 324 --EPESQILQLQVFDWDKVGGHDRLGMQLVP--LKLLTPHETKEFTLDLLKHTNISDPKD 379
             E   + L   V+D+D+   HD +G  ++   L+L      +    D+L+        +
Sbjct: 80  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG-----SE 134

Query: 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAE 439
               G++   L Y+P                                 AGLL+V +  A 
Sbjct: 135 KADLGELNFSLCYLPT--------------------------------AGLLTVTIIKAS 162

Query: 440 DVEGENHN---NPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEK-I 490
           +++  +     +PY       +     K++T + + T +P +NE   F +    +    +
Sbjct: 163 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 222

Query: 491 HIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR 524
            I V+           E +G   +       +GR
Sbjct: 223 SIAVVDYD---CIGHNEVIGVCRVGPEAADPHGR 253

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 91.4 bits (227), Expect = 1e-20
 Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 5/112 (4%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNE--NFK 319
           G+L V +++AS L   D  G SDPYVK SL   G +L  +KT++KK  LNP +NE   F 
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211

Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
           +  +  E+  L + V D+D +G ++ +G+  V  +   PH  + +  ++L +
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWA-EMLAN 262

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 426 SGAGLLSVLVQGAEDVEGENHN---NPYA---IILYKGDKKRTKMIRKTRDPAWNEEFQF 479
            G+  L V +  A D+  ++ N   +PY    ++  +  K +TK+ RKT +P +NE FQF
Sbjct: 17  YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 76

Query: 480 MLDEPPLHEK-IHIEVMSKRTGIRFWSKESLGHVEI 514
            +    L ++ +H  V       RF   + +G V +
Sbjct: 77  SVPLAELAQRKLHFSVYDFD---RFSRHDLIGQVVL 109

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  144 bits (365), Expect = 2e-41
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 10/144 (6%)

Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
           S     P G L V +V A  L   DFL   DPYV+L+   +    K    +     PEWN
Sbjct: 2   SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59

Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
           E F   V E  ++ L+ ++FD D     D +G   +PL+ +    +   T   +      
Sbjct: 60  ETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNV------ 112

Query: 376 DPKDMKQRGKIVVELTYVPFKEDS 399
             KD + +G+I V L++ P    S
Sbjct: 113 -VKDEEYKGEIWVALSFKPSGPSS 135

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 75.9 bits (187), Expect = 1e-16
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 12/125 (9%)

Query: 429 GLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMI-RKTRDPAWNEEFQFMLDEP 484
           G L V++  A+ +E  +     +PY  +  +   +++ +       P WNE F F + E 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69

Query: 485 PLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRI-NEKYHLINSK--RGVIHV 541
               ++  ++  K         +++G   I L  V   G I    Y+++  +  +G I V
Sbjct: 70  --TTELKAKIFDKD---VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWV 124

Query: 542 DIRWK 546
            + +K
Sbjct: 125 ALSFK 129

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  144 bits (365), Expect = 3e-41
 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 10/143 (6%)

Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK 319
               G+L V V  A   + K   G  DP V +    EK   KKT      LNP WNE  +
Sbjct: 3   SGSSGMLRVIVESA-SNIPKTKFGKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILE 58

Query: 320 LVVKEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
             ++      S  L + V D++ +G +  +G   V LK LT  +++     L+    + +
Sbjct: 59  FDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS---LLN 115

Query: 377 PKDMKQRGKIVVELTYVPFKEDS 399
            K       I + + Y P    S
Sbjct: 116 EKGQDTGATIDLVIGYDPPSGPS 138

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 14/130 (10%)

Query: 428 AGLLSVLVQGAEDVEGENHNN--PYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP 485
           +G+L V+V+ A ++         P   +++K +KK+TK +    +P WNE  +F L   P
Sbjct: 6   SGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIP 65

Query: 486 L--HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI-------NSKR 536
           L     + I V            + +G   + L D+  +   +  Y LI           
Sbjct: 66  LDFSSSLGIIVKDFE---TIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTG 122

Query: 537 GVIHVDIRWK 546
             I + I + 
Sbjct: 123 ATIDLVIGYD 132

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  144 bits (364), Expect = 6e-41
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW---KKTTVKKKNLNPEWNE 316
           ++   I+ V+V+    L KKD LG SDPYV+++L           +T   KK+LNP+WNE
Sbjct: 16  EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75

Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
                V  P+   L  +VFD +++   D LG   VPL  L     +       K   +  
Sbjct: 76  EILFRVH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134

Query: 377 P-KDMKQRGKIVVELTYVP 394
                + +G + +++TY+P
Sbjct: 135 RSHKSRVKGYLRLKMTYLP 153

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 59.8 bits (145), Expect = 6e-11
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 25/155 (16%)

Query: 412 KGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNN---PYAII------LYKGDKKRT 462
                +     E    + ++ V V     +  ++      PY  +             +T
Sbjct: 3   ATCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQT 62

Query: 463 KMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN 522
           K I+K+ +P WNEE  F +   P   ++  EV  +    R    + LG V++ L  +   
Sbjct: 63  KTIKKSLNPKWNEEILFRV--HPQQHRLLFEVFDEN---RLTRDDFLGQVDVPLYPLPTE 117

Query: 523 GRINEKYHLI-----------NSKRGVIHVDIRWK 546
               E+ +             +  +G + + + + 
Sbjct: 118 NPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  140 bits (355), Expect = 7e-40
 Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 11/140 (7%)

Query: 254 ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPE 313
           + S    K VGIL VKV++A+ LL  DF G SDP+  L L  ++L   +T    KNLNPE
Sbjct: 3   SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPE 59

Query: 314 WNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373
           WN+ F   +K+    +L++ VFD D     D LG   +PL  +   +   + L       
Sbjct: 60  WNKVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-- 116

Query: 374 ISDPKDMKQRGKIVVELTYV 393
                +   +G I +E+  +
Sbjct: 117 -----EQAFKGVIYLEMDLI 131

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 67.7 bits (166), Expect = 6e-14
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIRKTRDPAWNE 475
           S     +   G+L V V  A D+   + +   +P+ ++    D+ +T  + K  +P WN+
Sbjct: 3   SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNK 62

Query: 476 EFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR---INEKYHLI 532
            F F + +   H+ + + V  +         + LG V I L  +        + +   L 
Sbjct: 63  VFTFPIKDI--HDVLEVTVFDED---GDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLE 117

Query: 533 NSKRGVIHVDIRW 545
            + +GVI++++  
Sbjct: 118 QAFKGVIYLEMDL 130

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  127 bits (320), Expect = 4e-35
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 266 LHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
             V V+RA+K+ K    D L T DPYV+L ++      K+T     ++NP WNE F+ ++
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
              +  +L++ + D +     + LG     +  +   E KE      +            
Sbjct: 65  DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------VT 113

Query: 383 RGKIVVELT 391
              + + L 
Sbjct: 114 EMVLEMSLE 122

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 14/127 (11%)

Query: 428 AGLLSVLVQGAEDVEGENHNN------PYAIILYKGD---KKRTKMIRKTRDPAWNEEFQ 478
           +   +V+V  A  V      +      PY  +        +KRT+      +P WNE F+
Sbjct: 2   SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61

Query: 479 FMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGV 538
           F+LD       + I +M           E+LG     ++ +    +    +        V
Sbjct: 62  FILDPNQ-ENVLEITLMDANYV----MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMV 116

Query: 539 IHVDIRW 545
           + + +  
Sbjct: 117 LEMSLEV 123

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  124 bits (312), Expect = 1e-33
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 22/156 (14%)

Query: 248 EIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK 307
           E  +  +      K    + + VV A  L  KD  G+SDPYV + +   K   K+T    
Sbjct: 1   EFAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIY 57

Query: 308 KNLNPEWNENFKLVVKEPESQILQLQVFDWD-----------KVGGHDRLGMQLVPLKLL 356
            NLNP W ENF        S  ++++V D D           K    D LG  ++ ++ L
Sbjct: 58  GNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

Query: 357 TPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392
           +      + LD                G I + ++ 
Sbjct: 117 SGEMDVWYNLD-------KRTDKSAVSGAIRLHISV 145

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 16/140 (11%)

Query: 418 QSSDEEALSGAGLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIRKTRDPAWN 474
           QS  +     +  +S+ V  A+ ++ ++     +PY  +     KKRTK I    +P W 
Sbjct: 6   QSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWE 65

Query: 475 EEFQFMLDEPPLHEKIHIEVM--------SKRTGIRFWSKESLGHVEINLTDVVHNGRIN 526
           E F F        ++I + V+          +   +  S + LG   I +  +     + 
Sbjct: 66  ENFHFECHNS--SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVW 123

Query: 527 ---EKYHLINSKRGVIHVDI 543
              +K    ++  G I + I
Sbjct: 124 YNLDKRTDKSAVSGAIRLHI 143

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  123 bits (311), Expect = 2e-33
 Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 3/115 (2%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK---L 320
             L VK+++A +L  KDF GTSDP+VK+ L  +K    +T VK+KNLNP WNE F     
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
             ++   +IL LQV D+D+   +D +G   +PL  +   + + F  DL      S
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSS 140

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 428 AGLLSVLVQGAED---VEGENHNNPYAIILYKGDKKR---TKMIRKTRDPAWNEEFQFML 481
              L+V +  A++    +    ++P+  I    DKK    TK+ RK  +P WNE F F  
Sbjct: 25  ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84

Query: 482 --DEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL 531
              E  +   ++++V+      RF   + +G V I L  V           L
Sbjct: 85  FPYEKVVQRILYLQVLDYD---RFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  121 bits (305), Expect = 6e-33
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
           + + V+ A  L KKDF    DP+ K+ + G       T   K  L+P+WN+++ L V   
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQC-HSTDTVKNTLDPKWNQHYDLYV--G 63

Query: 326 ESQILQLQVFDWDKVGGHDR---LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMK 381
           ++  + + V++  K+        LG   +    ++   +T    LDL K    +      
Sbjct: 64  KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL---NPSDTDA 120

Query: 382 QRGKIVVELTY 392
            RG+IVV L  
Sbjct: 121 VRGQIVVSLQT 131

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 426 SGAGLLSVLVQGAEDVEGENHN---NPYAIILYKGD--KKRTKMIRKTRDPAWNEEFQFM 480
           S    + + V  A+++  ++     +P+A I+  G      T  ++ T DP WN+ +   
Sbjct: 2   SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLY 61

Query: 481 LDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRIN-EKYHLINSK---- 535
           + +    + I I V + +   +      LG V +    +        ++  L        
Sbjct: 62  VGK---TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDT 118

Query: 536 ---RGVIHVDIRWK 546
              RG I V ++ +
Sbjct: 119 DAVRGQIVVSLQTR 132

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  119 bits (299), Expect = 1e-31
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 15/141 (10%)

Query: 255 SSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW 314
            S+        L + V+ A     K       PYV++++ G+    KKT       +P+W
Sbjct: 27  GSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKW 83

Query: 315 NENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLL 369
            +   ++V       L  +V+    +     LG   + +           E    TL L 
Sbjct: 84  KQPLTVIVT--PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLG 141

Query: 370 KHTNISDPKDMKQRGKIVVEL 390
                 D +  +  G + + L
Sbjct: 142 -----GDKEPTETIGDLSICL 157

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 74.1 bits (182), Expect = 9e-16
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 14/136 (10%)

Query: 414 SGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIRKTRD 470
               Q     +L+    L + V  A+  E + +    +PY  +   G  K+T+    T  
Sbjct: 21  DSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNS 80

Query: 471 PAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVV--HNGRINEK 528
           P W +    ++       K+H  V S +T     S   LG   +++ + +  +N ++ E 
Sbjct: 81  PKWKQPLTVIVTP---VSKLHFRVWSHQT---LKSDVLLGTAALDIYETLKSNNMKLEEV 134

Query: 529 Y---HLINSKRGVIHV 541
                L   K     +
Sbjct: 135 VVTLQLGGDKEPTETI 150

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  115 bits (289), Expect = 2e-30
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFK-- 319
             L   ++RA  L   D  G +DPYVKL L     K    +T   +   NP WNE  +  
Sbjct: 29  SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88

Query: 320 -LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370
            +  ++ + + L++ V D DK G ++ +G     LK L  ++ K F + L +
Sbjct: 89  GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 428 AGLLSVLVQGAED---VEGENHNNPYAII-----LYKGDKKRTKMIRKTRDPAWNEEFQF 479
              L   +  A+    ++     +PY  +       K +K RTK +R TR+P WNE  Q+
Sbjct: 28  NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87

Query: 480 ML--DEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL 531
               +E    + + I V  +    +F   E +G    +L  +  N R N    L
Sbjct: 88  HGITEEDMQRKTLRISVCDED---KFGHNEFIGETRFSLKKLKANQRKNFNICL 138

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  114 bits (288), Expect = 2e-30
 Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
             L V +++A++L   D  GTSDPYVK+ L  +K    +T V +K LNP +NE F   V 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 324 EPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
             E   + L + V+D+D+   HD +G   VP+  +      E   DL 
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 59.3 bits (144), Expect = 8e-11
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 428 AGLLSVLVQGAED---VEGENHNNPYAIIL---YKGDKKRTKMIRKTRDPAWNEEFQFML 481
              L V +  A +   ++    ++PY  +     K  K  TK+ RKT +P +NE+F F +
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92

Query: 482 DEPPLHEK-IHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534
               L  K + + V       RF   + +G  ++ +  V       E   L ++
Sbjct: 93  PYSELGGKTLVMAVYDFD---RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 143

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  111 bits (280), Expect = 3e-29
 Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
             L V +++A++L   D  GTSDPYVK+ L  +K    +T V +K LNP +NE F   V 
Sbjct: 42  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101

Query: 324 EPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
             E   + L + V+D+D+   HD +G   VP+  +      E   DL 
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 428 AGLLSVLVQGAED---VEGENHNNPYAIIL---YKGDKKRTKMIRKTRDPAWNEEFQFML 481
              L V +  A +   ++    ++PY  +     K  K  TK+ RKT +P +NE+F F +
Sbjct: 41  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100

Query: 482 DEPPLHEK-IHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK 535
               L  K + + V       RF   + +G  ++ +  V       E   L +++
Sbjct: 101 PYSELGGKTLVMAVYDFD---RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  109 bits (274), Expect = 2e-28
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
            +L V V  A  L+  D  G SDPYVKL L  +      +KT   K +LNPEWNE F+  
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 322 VKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
           +KE +  + L ++++DWD    +D +G     +  L       +   LL  
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW-FKLLSQ 140

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 24/117 (20%), Positives = 56/117 (47%), Gaps = 12/117 (10%)

Query: 429 GLLSVLVQGAEDVEGENHN---NPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFM 480
            +L V+V+ A+++   + N   +PY  +    D     K++TK I+ + +P WNE F+F 
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 481 LDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRG 537
           L E     ++ +E+            + +G +   +++ +    ++  + L++ + G
Sbjct: 91  LKESDKDRRLSVEIWDWD---LTSRNDFMGSLSFGISE-LQKAGVDGWFKLLSQEEG 143

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  118 bits (295), Expect = 5e-28
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 260 KKPVGILHVKVVRASKLLKK---DFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE 316
            +      V V+RA+K+ K    D L T DPYV+L ++      K+T     ++NP WNE
Sbjct: 14  HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73

Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
            F+ ++   +  +L++ + D + V   + LG     +  +   E KE      + T +  
Sbjct: 74  TFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 132

Query: 377 PKDMKQR 383
              ++  
Sbjct: 133 EMSLEVC 139

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 54.2 bits (129), Expect = 9e-08
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 14/128 (10%)

Query: 429 GLLSVLVQGAEDVEGENHN------NPYAII---LYKGDKKRTKMIRKTRDPAWNEEFQF 479
              +V+V  A  V            +PY  +        +KRT+      +P WNE F+F
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 480 MLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVI 539
           +LD P     + I +M           E+LG     ++ +    +    +        V+
Sbjct: 78  ILD-PNQENVLEITLMDANY----VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 132

Query: 540 HVDIRWKM 547
            + +    
Sbjct: 133 EMSLEVCS 140

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score =  103 bits (257), Expect = 4e-26
 Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 8/133 (6%)

Query: 418 QSSDEEALSGAGL-LSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPA-WNE 475
             S      G+ + L V ++   ++ G    +  A + ++G    ++++    D A ++E
Sbjct: 9   HHSSGLVPRGSHMALIVHLKTVSELRG--RADRIAKVTFRGQSFYSRVLENCEDVADFDE 66

Query: 476 EFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534
            F++ +      +E + I++ +     + +S + +G   + L  VV   R+     LI+ 
Sbjct: 67  TFRWPVASSIDRNEVLEIQIFNYS---KVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD 123

Query: 535 KRGVIHVDIRWKM 547
              +I   +  ++
Sbjct: 124 NNAIIKTSLSMEV 136

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 66.6 bits (162), Expect = 2e-13
 Identities = 24/132 (18%), Positives = 57/132 (43%), Gaps = 17/132 (12%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP-EWNENFKLVVKE 324
           L V +   S+L      G +D   K++  G+      + V +   +  +++E F+  V  
Sbjct: 23  LIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVAS 74

Query: 325 P--ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
               +++L++Q+F++ KV  +  +G   + L+ +      E +  L+      D  +   
Sbjct: 75  SIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLI------DDNNAII 128

Query: 383 RGKIVVELTYVP 394
           +  + +E+ Y  
Sbjct: 129 KTSLSMEVRYQA 140

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score =  103 bits (258), Expect = 4e-26
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 22/157 (14%)

Query: 245 QTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDF----------LGTSDPYVKLSLT 294
            +  +    + S    K  G L V++  A  L    +              DPY+ +S+ 
Sbjct: 10  HSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD 69

Query: 295 GEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
             ++   +T+ K+K   P +NE F   V   +   L+L VF    +G    +    +  +
Sbjct: 70  QVRV--GQTSTKQKTNKPTYNEEFCANV--TDGGHLELAVFHETPLGYDHFVANCTLQFQ 125

Query: 355 LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391
            L        T +           D++  GK+ V +T
Sbjct: 126 ELLRTTGASDTFEGW--------VDLEPEGKVFVVIT 154

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 58.1 bits (140), Expect = 3e-10
 Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 26/162 (16%)

Query: 403 SSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAED-------------VEGENHNNP 449
           SS    +   G     S     +   G L V +  A                +G    +P
Sbjct: 3   SSHHHHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDP 62

Query: 450 YAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKES 508
           Y  +     +  +T   +KT  P +NEEF   + +      + + V  +           
Sbjct: 63  YLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG---GHLELAVFHET---PLGYDHF 116

Query: 509 LGHVEINLTDVVHNGRINEK----YHLINSKRGVIHVDIRWK 546
           + +  +   +++     ++       L     G + V I   
Sbjct: 117 VANCTLQFQELLRTTGASDTFEGWVDL--EPEGKVFVVITLT 156

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 98.2 bits (245), Expect = 2e-24
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
               V +  A  L   D    TSDPY+K+++  EK    KT V +K L+P ++E F    
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 323 KEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDLLKH 371
                     L   +  +D+    D +G  L+PL  +           +++  
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 17/121 (14%)

Query: 428 AGLLSVLVQGAEDV----EGENHNNPYAIIL---YKGDKKRTKMIRKTRDPAWNEEFQFM 480
                V ++ A  +    E    ++PY  +     K  K +T+++RKT DPA++E F F 
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF- 79

Query: 481 LDEPPLHE----KIHIEVMSKRTGIRFWSKESLGHVEINLTDV-VHNGRINEKYHLINSK 535
               P  +     +H  ++S     RF   + +G V I L+ + +  G++     +I+  
Sbjct: 80  -YGIPYTQIQELALHFTILSFD---RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135

Query: 536 R 536
            
Sbjct: 136 S 136

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 97.6 bits (243), Expect = 3e-24
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 25/143 (17%)

Query: 261 KPVGILHVKVVRASKLLKKDF-----------LGTSDPYVKLSLTGEKLPWKKTTVKKKN 309
              G+L +K+  A  L    +               DPY+ L++   ++   +T  K+K 
Sbjct: 3   VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKT 60

Query: 310 LNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
            +P W++ F   V       ++L VF    +G  D +    +  + L  + ++ F   + 
Sbjct: 61  NSPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI- 117

Query: 370 KHTNISDPKDMKQRGKIVVELTY 392
                    D++  GK+ V +  
Sbjct: 118 ---------DLEPEGKVYVIIDL 131

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 448 NPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK 506
           +PY  +     +  +T   +KT  PAW++EF   +       KI + V            
Sbjct: 39  DPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIELAVFHDA---PIGYD 92

Query: 507 ESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWK 546
           + + +  I   +++ NG  + +  +     G ++V I   
Sbjct: 93  DFVANCTIQFEELLQNGSRHFEDWIDLEPEGKVYVIIDLS 132

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 96.3 bits (240), Expect = 7e-24
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 6/112 (5%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK-KTTVKKKNLNPEWNENFKLVV 322
             L V  + A      +  G  D YV+ S+       + +T +KK+ L+  W E   L +
Sbjct: 26  AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 323 KEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
            E E  +  L L +   D+   H   G   + L   +         +L    
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 431 LSVLVQGAEDVEGENHNNPYAIIL----YKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL 486
           L V    A     +   + Y            + +T + ++     W E     L E  L
Sbjct: 28  LFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 487 HEK-IHIEVMSKRTGIRFWSKESLGHVEINLTDV 519
               + + + +     RF      G + + L   
Sbjct: 88  PTATLTLTLRTCD---RFSRHSVAGELRLGLDGT 118

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 14/123 (11%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW-----------KKTTVKKKNLNP 312
           G L + +++A  L+ +D  G SDP+VK+ L   +              ++T   +K+LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 313 EWNENFKLVVKEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
           EWN+         E    + L++ V+D+D+   +D LG  L+ L   +  +       L 
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

Query: 370 KHT 372
           + T
Sbjct: 138 EQT 140

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 22/122 (18%)

Query: 429 GLLSVLVQGAEDVEGENHN---NPYAII--------------LYKGDKKRTKMIRKTRDP 471
           G L + +  A ++   ++N   +P+  +                   K+RTK ++K+ +P
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 472 AWNEEFQFML--DEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKY 529
            WN+   +     E  + + + + V       RF S + LG V I+L+   H       Y
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYD---RFSSNDFLGEVLIDLSSTSHLDNTPRWY 134

Query: 530 HL 531
            L
Sbjct: 135 PL 136

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 93.2 bits (232), Expect = 1e-22
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKL 320
             L V V    +L   D     S+PYVK  L     +   +KT++K+  +NP ++E  + 
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82

Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
            + E     + LQ  V+   + G +  LG   + +      +  +  L L    
Sbjct: 83  EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 15/115 (13%)

Query: 428 AGLLSVLVQGAED----VEGENHNNPYAIILY------KGDKKRTKMIRKTRDPAWNEEF 477
              L V V+         E +  +NPY +  Y      +  K++T + R T +P ++E  
Sbjct: 22  TQSLVVHVKECHQLAYADEAKKRSNPY-VKTYLLPDKSRQGKRKTSIKRDTVNPLYDETL 80

Query: 478 QFMLDEPPLHEK-IHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL 531
           ++ + E  L ++ +   V       RF     LG  EI +     + +++    L
Sbjct: 81  RYEIPESLLAQRTLQFSVWHHG---RFGRNTFLGEAEIQMDSWKLDKKLDHCLPL 132

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 92.9 bits (231), Expect = 2e-22
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 264 GILHVKVVRASKL-------LKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE 316
             L V+V+ A  L         +  +  S+PYVK+ L  ++   K+T VK+K   P + E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 317 NFKLVVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
            +   +   E   + L L V D+DK   H  +G   VPL  +   +   +   L
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 431 LSVLVQGAEDVEGENHNNPYAIILY----KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL 486
           L   +      +   H+NPY + +     + + K+T + RKT+ P + E + F +     
Sbjct: 38  LPPPISHDGSRQDMAHSNPY-VKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEA 96

Query: 487 HEK-IHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK 535
             + + + V+      +F     +G V + L +V      +    LI S 
Sbjct: 97  QRRTLLLTVVDFD---KFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSG 143

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 92.9 bits (231), Expect = 3e-22
 Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 242 IWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLT--GEKL 298
           +  QT   P +    + ++   G L V+V+RA  L +K     T  PYVK+ L   G  +
Sbjct: 8   VGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACI 67

Query: 299 PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DWDKVGGHDRLGMQLVPLKLLT 357
             KKT + +K L+P + ++       P+ ++LQ+ V+ D+ ++     +G+  + L+ L 
Sbjct: 68  AKKKTRIARKTLDPLYQQSLVFDE-SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELD 126

Query: 358 PHETKEFTLDLLKHTNISDP 377
                     L   +++ DP
Sbjct: 127 LSSMVIGWYKLFPPSSLVDP 146

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 57.1 bits (138), Expect = 7e-10
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 15/114 (13%)

Query: 428 AGLLSVLVQGAEDV----EGENHNNPYAIILY------KGDKKRTKMIRKTRDPAWNEEF 477
            G L V V  A  +      ++   PY + +Y         KK+T++ RKT DP + +  
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPY-VKVYLLENGACIAKKKTRIARKTLDPLYQQSL 87

Query: 478 QFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL 531
            F  DE P  + + + V       R   K  +G  +I L ++  +  +   Y L
Sbjct: 88  VF--DESPQGKVLQVIVWGDYG--RMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 90.9 bits (226), Expect = 1e-21
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
           G L V ++R   L   D  G SDP+VKL L     K    KT +KKK LNPE+NE F   
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96

Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
           +K  +   + L + V+D+D    +D +G   + +
Sbjct: 97  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 425 LSGAGLLSVLVQGAEDVEGENHN---NPYA-IILY----KGDKKRTKMIRKTRDPAWNEE 476
            +  G L V +     +   + N   +P+  + L     K  K +T++ +KT +P +NEE
Sbjct: 33  STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEE 92

Query: 477 FQFMLDEPPLHEK-IHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK 535
           F + +    L +K + I V          S + +G  ++ ++      R+   Y  + +K
Sbjct: 93  FFYDIKHSDLAKKSLDISVWDYD---IGKSNDYIGGCQLGISAKGE--RLKHWYECLKNK 147

Query: 536 RGVIHVDIRW 545
              I    RW
Sbjct: 148 DKKIE---RW 154

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 89.3 bits (222), Expect = 2e-21
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
             + V +++A  L   D  GTSDPYVK+ L    +++  KKT  KK+NLNP +NE+F   
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75

Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK 354
           +   +     + + V D DK+  +D +G   +  K
Sbjct: 76  IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 12/104 (11%)

Query: 425 LSGAGLLSVLVQGAEDVEGENHN---NPYAII-LYKGD----KKRTKMIRKTRDPAWNEE 476
              A  + V +  A +++  +     +PY  + L   D    KK+T   ++  +P +NE 
Sbjct: 12  NPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNES 71

Query: 477 FQFMLDEPPLHEK-IHIEVMSKRTGIRFWSKESLGHVEINLTDV 519
           F F +    L E  I I VM K    +    + +G + ++    
Sbjct: 72  FAFDIPTEKLRETTIIITVMDKD---KLSRNDVIGKIYLSWKSG 112

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 88.2 bits (219), Expect = 7e-21
 Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL---TGEKLPWKKTTVKKKNLNPEWNENFKL 320
               + +++ S L            +++++   +       +T     +    +NE F +
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102

Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK 354
            +  P    + L++ V   D+    + LG   + L 
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLA 138

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 456 KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEK-IHIEVMSKRTGIRFWSKESLGHVEI 514
                RT+ +  +    +NE F   +  P LH+K + ++V +     R   +E LG  +I
Sbjct: 79  TTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTD---RSHLEECLGGAQI 135

Query: 515 NLTDVVHNGRINEK-YHLIN 533
           +L +V  +G  + + Y+L++
Sbjct: 136 SLAEVCRSGERSTRWYNLLS 155

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 87.4 bits (217), Expect = 1e-20
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
             L V V     L+       SDPYV++ L     +   +KT V KK LNP ++++F   
Sbjct: 24  NKLIVVVHACRNLIAFSE-DGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82

Query: 322 VKEPE--SQILQLQVFDWDKVGGHDR--LGMQLVPLKLLTPHETKEFTLDLLKHT 372
           V  PE   + L + V +       D+  LG  LV L      +      DL + +
Sbjct: 83  VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS 137

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 15/115 (13%)

Query: 428 AGLLSVLVQGAED--VEGENHNNPYAIILY------KGDKKRTKMIRKTRDPAWNEEFQF 479
              L V+V    +     E+ ++PY + +Y      +  +++T + +KT +P +++ F F
Sbjct: 23  RNKLIVVVHACRNLIAFSEDGSDPY-VRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81

Query: 480 MLDEPPLHEK-IHIEVMSKRTGIRFWSKES--LGHVEINLTDVVHNGRINEKYHL 531
            +  P +  + + + V +      F SK+   LG V + L          + Y L
Sbjct: 82  SVSLPEVQRRTLDVAVKNSG---GFLSKDKGLLGKVLVALASEELAKGWTQWYDL 133

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 87.9 bits (218), Expect = 1e-20
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
           G L V ++ A  L K D  G SDPYVK+ L   G++L  KKTT+KK  LNP +NE+F   
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
           V   +     + + V D+DK+G +D +G   V  
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 12/101 (11%)

Query: 425 LSGAGLLSVLVQGAEDVEGENHN---NPYAII-LYKGD----KKRTKMIRKTRDPAWNEE 476
           +  AG L+V++  A++++  +     +PY  I L +      KK+T + + T +P +NE 
Sbjct: 21  VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNES 80

Query: 477 FQFMLDEPPLHEK-IHIEVMSKRTGIRFWSKESLGHVEINL 516
           F F +    + +  + + V+      +    +++G V +  
Sbjct: 81  FSFEVPFEQIQKVQVVVTVLDYD---KIGKNDAIGKVFVGY 118

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 8/96 (8%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
             L V V++A  L K D  G SDPYVK++L    +++  KKT VKK   N  +NE F   
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLGMQLVPL 353
           +  P   +    ++  V D ++   ++ +G  ++  
Sbjct: 90  I--PCESLEEISVEFLVLDSERGSRNEVIGRLVLGA 123

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 12/101 (11%)

Query: 425 LSGAGLLSVLVQGAED---VEGENHNNPYAII-LYKGD----KKRTKMIRKTRDPAWNEE 476
            S    L+V+V  A      +    ++PY  + LY       KK+T + + T +  +NE 
Sbjct: 26  QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNEL 85

Query: 477 FQFMLDEPPLHEK-IHIEVMSKRTGIRFWSKESLGHVEINL 516
           F F +    L E  +   V+      R    E +G + +  
Sbjct: 86  FVFDIPCESLEEISVEFLVLDSE---RGSRNEVIGRLVLGA 123

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 85.8 bits (213), Expect = 3e-20
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFK-- 319
           G L + V+    L+ +D     +PYVK  L     K   +KT + +K  NP +NE     
Sbjct: 20  GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78

Query: 320 -LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374
               +    + LQL V   + +  +  LG   +PLK     +       L   T +
Sbjct: 79  GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL 134

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 18/115 (15%)

Query: 429 GLLSVLVQGAED--VEGENHNNPYAIILY------KGDKKRTKMIRKTRDPAWNEEFQFM 480
           G L ++V   +D   E     NPY +  Y      K  K++TK+ RKTR+P +NE   + 
Sbjct: 20  GTLFIMVMHIKDLVTEDGADPNPY-VKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY- 77

Query: 481 LDEPPLHE----KIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL 531
                       ++ + V+S            LG + + L D   +    + Y L
Sbjct: 78  -SGYSKETLRQRELQLSVLSAE---SLRENFFLGGITLPLKDFNLSKETVKWYQL 128

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 85.4 bits (212), Expect = 5e-20
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
             L V ++ A  L  ++     +PYVK+    ++     ++T   KK L P+WN+ F   
Sbjct: 21  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80

Query: 322 VKEPE---SQILQLQVFDWDKVGGH--DRLGMQLVPLKLLTPHETKE 363
                    ++L++ ++D  +V     + LG  L+ L+     +   
Sbjct: 81  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 20/124 (16%)

Query: 428 AGLLSVLVQGAED---VEGENHNNPYAII-----LYKGDKKRTKMIRKTRDPAWNEEFQF 479
              L V + GA+D    E     NPY  I         +K+RTK ++KT +P WN+ F +
Sbjct: 20  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79

Query: 480 MLDEPPLHE----KIHIEVMSKRTGIRFWSKES--LGHVEINLTDVVHNGRINEKYHLIN 533
                   E     + I +  +    R   +ES  LG + I L   + +      Y L  
Sbjct: 80  --SPVHRREFRERMLEITLWDQA---RVREEESEFLGEILIELETALLDDE-PHWYKLQT 133

Query: 534 SKRG 537
              G
Sbjct: 134 HDSG 137

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
             L V ++ A  L  ++     +PYVK+    ++     ++T   KK L P+WN+ F   
Sbjct: 18  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77

Query: 322 VKEPE---SQILQLQVFDWDKVGGH--DRLGMQLVPLKLLTPHETKE 363
                    ++L++ ++D  +V     + LG  L+ L+     +   
Sbjct: 78  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 19/106 (17%)

Query: 428 AGLLSVLVQGAED---VEGENHNNPYAII-----LYKGDKKRTKMIRKTRDPAWNEEFQF 479
              L V + GA+D    E     NPY  I         +K+RTK ++KT +P WN+ F +
Sbjct: 17  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76

Query: 480 MLDEPPLHE----KIHIEVMSKRTGIRFWSKES--LGHVEINLTDV 519
                   E     + I +  +    R   +ES  LG + I L   
Sbjct: 77  --SPVHRREFRERMLEITLWDQA---RVREEESEFLGEILIELETA 117

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 84.0 bits (208), Expect = 3e-19
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
            +L + ++    L+ K   GT DPYVK+SL     +L  +KT       +P ++E+F   
Sbjct: 27  RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85

Query: 322 VKEPESQI-LQLQVFDWDKVGGHDR-LGMQLVPLK 354
           V+E + Q  L + V++          +G     +K
Sbjct: 86  VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVK 120

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 21/128 (16%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 428 AGLLSVLVQGAED--VEGENHNNPYA-IILY----KGDKKRTKMIRKTRDPAWNEEFQFM 480
             +L + +   +    +     +PY  I L     +   ++T+ +   RDPA++E F F 
Sbjct: 26  DRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85

Query: 481 LDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEK-YHLINSKRG-V 538
           + E    +++ + V ++ +  R      +G +   +  ++   +     Y+L+    G  
Sbjct: 86  VQEEDDQKRLLVTVWNRASQSR--QSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRT 143

Query: 539 IHVDIRWK 546
            H+ +  +
Sbjct: 144 KHLKVARR 151

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 76.1 bits (186), Expect = 7e-15
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL- 320
            +  L V   RA  L        +D Y+K+   G++    +T V   N NP W +     
Sbjct: 392 GLAHLVVSNFRAEHLWGDYT-TATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFE 447

Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
            V       L++QV+D D     D LG       
Sbjct: 448 NVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH 481

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 61.5 bits (148), Expect = 3e-10
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 445 NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504
              + Y  + + G + RT ++    +P W ++  F          + ++V         W
Sbjct: 412 TATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDAD---YGW 468

Query: 505 SKESLGHVEINLTDVVHN-------GRINEKYHL 531
             + LG  + +     H        GR+   YH 
Sbjct: 469 DDDLLGSCDRSPHSGFHEVTCELNHGRVKFSYHA 502

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 56.1 bits (135), Expect = 6e-10
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
            +L V V +A     ++     + YV L +   K     TT+  +   P W ++F   + 
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK----STTIAVRGSQPSWEQDFMFEIN 57

Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
             +  +  ++V++   +     +G   +PL+
Sbjct: 58  RLDLGLT-VEVWN-KGLIWDTMVGTVWIPLR 86

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE 488
            LL V V+ A+    +   N Y   L   + K T +  +   P+W ++F F ++   L  
Sbjct: 5   SLLCVGVKKAKFDGAQEKFNTYVT-LKVQNVKSTTIAVRGSQPSWEQDFMFEINR--LDL 61

Query: 489 KIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR 524
            + +EV +K           +G V I L  +  +  
Sbjct: 62  GLTVEVWNKGLI----WDTMVGTVWIPLRTIRQSNE 93

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 58.8 bits (141), Expect = 3e-09
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 266 LHVKVVRASKLLKKDFLGTS--DPYVKLSLTG---EKLPWKKTTVKKKNLNPEWNENFKL 320
           L V+++   +L K +    S  DP V + + G   +    +   +     NP W+  F+ 
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558

Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
            V  P+  +++  V D+D    +D +G   +P   L  
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 54.2 bits (129), Expect = 6e-08
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 13/104 (12%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNL---NPEWNENFKLVV 322
           L + ++ A +L  K        Y +L L      + +TT K ++       W E+F+   
Sbjct: 13  LKLWIIEARELPPKK-----RYYCELCLDDM--LYARTTSKPRSASGDTVFWGEHFEFNN 65

Query: 323 KEPESQILQLQVFDWDKVGGHDR---LGMQLVPLKLLTPHETKE 363
                 +      D DK    D+   +G+  VP+  L      E
Sbjct: 66  LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTE 109

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 7/111 (6%)

Query: 431 LSVLVQGAEDVEGENHNNPYAIILYKGDKK-RTKMIRKTRD---PAWNEEFQFMLDEPPL 486
           L + +  A ++        Y  +        RT    ++       W E F+F  + P +
Sbjct: 13  LKLWIIEARELP--PKKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFN-NLPAV 69

Query: 487 HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRG 537
                          +      +G V + +  +       + Y +      
Sbjct: 70  RALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 51.5 bits (123), Expect = 7e-08
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
            +L V V +A     ++     + YV L +       + TT+  +   P W ++F   + 
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ----NVESTTIAVRGSQPSWEQDFMFEIN 66

Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
             +  +  ++V++   +     +G   +PL+
Sbjct: 67  RLDLGLT-VEVWN-KGLIWDTMVGTVWIPLR 95

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE 488
            LL V V+ A+    +   N Y   L   + + T +  +   P+W ++F F ++   L  
Sbjct: 14  SLLCVGVKKAKFDGAQEKFNTYVT-LKVQNVESTTIAVRGSQPSWEQDFMFEINR--LDL 70

Query: 489 KIHIEVMSKRTGIRFWSKESLGHVEINLTDVVH 521
            + +EV +K           +G V I L  +  
Sbjct: 71  GLTVEVWNK----GLIWDTMVGTVWIPLRTIRQ 99

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
             +G L V V+ A++L      G S+PY ++S+  +      T   +  LNP+WN N + 
Sbjct: 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ---SYTTRTIQDTLNPKWNFNCQF 440

Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKD 379
            +K+    +L L +FD D+    D LG   +P+  + T  E+K      L    +     
Sbjct: 441 FIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV----- 495

Query: 380 MKQRGKIVVELTYVPF 395
               G++ V      F
Sbjct: 496 --PTGEVWVRFDLQLF 509

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 80/556 (14%), Positives = 170/556 (30%), Gaps = 148/556 (26%)

Query: 70  DYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPT 129
            Y+  D L+ F        D   C +V+   + I             E +++        
Sbjct: 15  QYQYKDILSVFEDAFVDNFD---CKDVQDMPKSIL---------SKEEIDHII--MSKDA 60

Query: 130 IYGIR----VYETNENQLV---MEPALR----WAGNP-NIVLVLKLLSFRITVQLVDLQI 177
           + G         + + ++V   +E  LR    +  +P         +  R+ ++  D ++
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RL 119

Query: 178 FAAPRITLKPLVPTFPCFATMVVSLME-RPH---VDFGIKILGGDIMSIPGLYQFIQKCI 233
           +   ++  K  V     +  +  +L+E RP    +  G+   G   +++     +  +C 
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC- 178

Query: 234 TKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSL 293
            K    I+ W        L+  +     P  +L   + +    +  ++   SD    + L
Sbjct: 179 -KMDFKIF-W--------LNLKNC--NSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 294 TGEKLPWKKTTVKKKNLNPE--------WNENFKLVVK--EPESQIL----QLQVFDWDK 339
               +  +   + K               N              +IL      QV D   
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAK---AWNAFNLSCKILLTTRFKQVTD--F 280

Query: 340 VGGHDRLGMQLVPLKL-LTPHETKEFTLDLLKHTNISD---PKDMKQRGKIVVEL----- 390
           +       + L    + LTP E K     LLK+ +      P+++       + +     
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL---LLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 391 -----TYVPFKE-DSIKFSSVSKKYSRKGSGNDQSSDE-----EALS--------GAGLL 431
                T+  +K  +  K +++ +      S N     E     + LS           LL
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIES-----SLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 432 SVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFML---------- 481
           S++       +         +++ K  K    ++ K       +E    +          
Sbjct: 393 SLIWFDVIKSDVM-------VVVNKLHKYS--LVEK-----QPKESTISIPSIYLELKVK 438

Query: 482 --DEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTD---VVHNGRINEKYHLINSKR 536
             +E  LH  I ++        + +  + L        D     H G     +HL N + 
Sbjct: 439 LENEYALHRSI-VD---HYNIPKTFDSDDLI---PPYLDQYFYSHIG-----HHLKNIEH 486

Query: 537 G-------VIHVDIRW 545
                   ++ +D R+
Sbjct: 487 PERMTLFRMVFLDFRF 502

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTV--KKKNLNPEWNENFKL 320
             L + +        +   G   +PY  + +              KK  + P W+  F  
Sbjct: 10  PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69

Query: 321 VVKEPESQILQLQVFD 336
            +   + +++Q+ V  
Sbjct: 70  HIN--KGRVMQIIVKG 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	548
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.85
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.85
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.84
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.84
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.84
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.83
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.83
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.82
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.82
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.8
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.8
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.79
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.79
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.78
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.77
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.77
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.77
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.77
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.77
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.76
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.75
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.75
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.75
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.75
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.74
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.74
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.74
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.74
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.74
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.74
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.74
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.74
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.74
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.74
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.73
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.73
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.73
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.73
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.73
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.72
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.72
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.72
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.72
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.72
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.72
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.72
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.72
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.72
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.72
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.71
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.71
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.71
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.71
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.71
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.7
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.7
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.69
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.69
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.69
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.69
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.69
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.69
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.69
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.69
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.68
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.68
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.67
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.67
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.67
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.66
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.64
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.6
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.59
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.58
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.57
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.56
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.55
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.52
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.51
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.48
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.41
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.36
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.35
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.33
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.24
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.17
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.14
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.12
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.11
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.0
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.97
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.93
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.93
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.92
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.91
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.85
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	92.13
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	91.86
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	91.18
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	88.93
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	88.49
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	88.45
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	83.26

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=7.5e-34  Score=282.45  Aligned_cols=237  Identities=27%  Similarity=0.406  Sum_probs=196.9

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD  336 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d  336 (548)
                      +....|.|.|+|++|++|+.+|..|.+||||++++++.....++|+++++++||.|||+|.|.+...  ....|.|+|||
T Consensus        14 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d   93 (284)
T 2r83_A           14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYD   93 (284)
T ss_dssp             EETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence            4456799999999999999999999999999999986544457899999999999999999998643  35799999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecccCcccccccccccccCCCCC
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGN  416 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~  416 (548)
                      +|.+++|++||++.+++.++..+.....|++|....    .......|+|++++.|.|.                     
T Consensus        94 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~----~~~~~~~G~i~l~l~~~p~---------------------  148 (284)
T 2r83_A           94 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE----KEEQEKLGDICFSLRYVPT---------------------  148 (284)
T ss_dssp             CCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCS----SCCCCCCCEEEEEEEEETT---------------------
T ss_pred             CCCCCCCceeEEEEEcchhcccCCcceeEEEeeccc----cccccccccEEEEEEecCc---------------------
Confidence            999999999999999999999888788888885421    1123467999999998763                     


Q ss_pred             CCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCC-C
Q 008950          417 DQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-H  487 (548)
Q Consensus       417 ~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~  487 (548)
                                 .+.|.|+|++|++|+..   +.+||||++++.+     .+++|++++++.||+|||+|.|.+..... .
T Consensus       149 -----------~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~  217 (284)
T 2r83_A          149 -----------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQK  217 (284)
T ss_dssp             -----------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGG
T ss_pred             -----------CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCc
Confidence                       57899999999999863   5789999999842     35699999999999999999999876433 2


Q ss_pred             CeEEEEEEEccCCccCCCCcceEEEEEechhh----------hc--cceeceEEEeCCC
Q 008950          488 EKIHIEVMSKRTGIRFWSKESLGHVEINLTDV----------VH--NGRINEKYHLINS  534 (548)
Q Consensus       488 ~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l----------~~--~~~~~~w~~L~~~  534 (548)
                      ..|.|+|||++.   ++.+++||++.++++.+          +.  +....+||+|.+.
T Consensus       218 ~~l~i~V~d~d~---~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          218 VQVVVTVLDYDK---IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             EEEEEEEEECCS---SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             eEEEEEEEeCCC---CCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            379999999985   67899999999999763          22  2355789988764

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=7.3e-33  Score=276.74  Aligned_cols=237  Identities=25%  Similarity=0.400  Sum_probs=188.2

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF  335 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~  335 (548)
                      .+....+.|.|+|++|++|+.+|..|.+||||++++.+.....++|+++++++||+|||+|.|.+...  ....|.|+||
T Consensus        14 ~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~   93 (296)
T 1dqv_A           14 RYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY   93 (296)
T ss_dssp             ECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred             EEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEE
Confidence            34556799999999999999999999999999999954433457999999999999999999998643  2458999999


Q ss_pred             EcCCCCCCCeeEEEEEE-CcccCC-CCceEEEEeccccccCCCCCCCccccEEEEEEEEEecccCcccccccccccccCC
Q 008950          336 DWDKVGGHDRLGMQLVP-LKLLTP-HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKG  413 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~-l~~l~~-~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~  413 (548)
                      |+|.+++|++||++.++ +.++.. ......|.+|...     .......|+|++++.|.|.                  
T Consensus        94 d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~-----~~~~~~~G~i~vsl~y~~~------------------  150 (296)
T 1dqv_A           94 DFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG-----GSEKADLGELNFSLCYLPT------------------  150 (296)
T ss_dssp             ECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC-----SSCCSCCCEEEEEEEEETT------------------
T ss_pred             EcCCCCCCceEEEEEeccccccccCCccceeeeccccc-----cccccccceEEEEEEeccc------------------
Confidence            99999999999999996 444443 2233445555321     1123567999999998763                  


Q ss_pred             CCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc--C---eEEEeeeccCCCCCccCceEEEEccCCC
Q 008950          414 SGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--G---DKKRTKMIRKTRDPAWNEEFQFMLDEPP  485 (548)
Q Consensus       414 ~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~--~---~~~kT~v~~~t~nP~wne~f~f~v~~~~  485 (548)
                                    .|.|.|+|++|++|+..   +.+||||++++.  +   .+++|++++++.||+|||.|.|.+....
T Consensus       151 --------------~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~  216 (296)
T 1dqv_A          151 --------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES  216 (296)
T ss_dssp             --------------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGG
T ss_pred             --------------cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHH
Confidence                          58999999999999863   578999999996  2   4579999999999999999999987642


Q ss_pred             C-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhc-------------cceeceEEEeCCC
Q 008950          486 L-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVH-------------NGRINEKYHLINS  534 (548)
Q Consensus       486 ~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~-------------~~~~~~w~~L~~~  534 (548)
                      . ...|.|+|||++.   ++.+++||++.++++++..             +....+|++|...
T Consensus       217 l~~~~L~i~V~d~d~---~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          217 VENVGLSIAVVDYDC---IGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             GGSCCCCCEEEECCS---SSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             ccCcEEEEEEEeCCC---CCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence            2 2379999999985   6789999999999987643             2244567777654

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=167.00  Aligned_cols=129  Identities=31%  Similarity=0.448  Sum_probs=109.5

Q ss_pred             CCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC---CCCEEEEEEEEc
Q 008950          261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDW  337 (548)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~  337 (548)
                      ...|.|.|+|++|++|+..|. |.+||||++++++++   ++|++++++.||+|||+|.|.+..+   ....|.|+|||+
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~   79 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF   79 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCE---EECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEe---EEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence            456999999999999999998 999999999999764   6999999999999999999999753   368999999999


Q ss_pred             CCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecc
Q 008950          338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK  396 (548)
Q Consensus       338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  396 (548)
                      |..++|++||++.+++.++..+.....|+++....+.   .+....|+|+++++|.|..
T Consensus        80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~---~~~~~~G~l~l~~~~~p~~  135 (140)
T 2dmh_A           80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE---KGQDTGATIDLVIGYDPPS  135 (140)
T ss_dssp             TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT---TCCEEEEEEEEEEEECCCB
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCC---CCCCCCCEEEEEEEEECCC
Confidence            9999999999999999999888777777763222221   1235679999999999854

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.85  E-value=6.8e-21  Score=167.18  Aligned_cols=128  Identities=31%  Similarity=0.505  Sum_probs=110.9

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeec-CCCCCeeeceEEEEEecCCCCEEEEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFD  336 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d  336 (548)
                      ....+.|.|+|+|++|++|+..|..|.+||||+++++++.   ++|++++ ++.||+|||+|.|.+.+ ....|.|+|||
T Consensus         4 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d   79 (136)
T 1wfj_A            4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFD   79 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECC
T ss_pred             CCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCcc---ceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEE
Confidence            3456889999999999999999989999999999999865   5899998 89999999999999987 56799999999


Q ss_pred             cCCCCCCCeeEEEEEECcccC-CCCceEEEEeccccccCCCCCCCccccEEEEEEEEEeccc
Q 008950          337 WDKVGGHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE  397 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~-~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~  397 (548)
                      ++.+++|++||++.+++.++. .+.....|++|..        +....|+|+++++|.|...
T Consensus        80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECCS
T ss_pred             CCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec--------CCccCEEEEEEEEEEeCCC
Confidence            999999999999999999994 4444566777642        2568899999999999753

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.84  E-value=2.8e-20  Score=166.73  Aligned_cols=129  Identities=33%  Similarity=0.519  Sum_probs=101.8

Q ss_pred             cCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc---cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEE
Q 008950          260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD  336 (548)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d  336 (548)
                      ....|.|+|+|++|++|+.+|..|.+||||++++.+..   ...++|++++++.||+|||+|.|.+.. ....|.|+|||
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~l~~~V~d   94 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP-QQHRLLFEVFD   94 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT-TTCEEEEEEEE
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC-CCCEEEEEEEE
Confidence            45679999999999999999988999999999998532   245799999999999999999999976 45789999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCCCce------EEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPHETK------EFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~~~~------~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      ++..++|++||++.+++.++..+...      ..|++|....     ......|+|+++++|.|
T Consensus        95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS-----TTCCCCSEEEEEEEECC
T ss_pred             CCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc-----CCCCcceEEEEEEEEeC
Confidence            99999999999999999999876532      3677764321     12467899999999986

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=2.4e-20  Score=161.41  Aligned_cols=120  Identities=26%  Similarity=0.407  Sum_probs=103.3

Q ss_pred             ceEEEEEEEEecCccc---cCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCC
Q 008950          263 VGILHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK  339 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~---~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~  339 (548)
                      .|.|.|+|++|++|+.   .|..|.+||||++++++.....++|++++++.||+|||+|.|.+.......|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            5899999999999998   4667899999999999754445799999999999999999999976677899999999998


Q ss_pred             CCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                      . +|++||++.++++++..+.....|++|.          ....|+|+++++-.
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~----------~~~~g~i~~~le~~  124 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVA  124 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECC
T ss_pred             C-CCceeEEEEEEHHHccCCCcEEEEEEcC----------CCceEEEEEEEEeC
Confidence            7 4899999999999999888888999883          24567777777543

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.84  E-value=9.3e-21  Score=169.15  Aligned_cols=119  Identities=27%  Similarity=0.330  Sum_probs=102.6

Q ss_pred             ccCCceEEEEEEEEecCccccCCC----------CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCC
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFL----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQ  328 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~----------g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~  328 (548)
                      .....|.|+|+|++|++|+++|..          |.+||||++++++++.  .+|+++++|+||+|||+|.|.+.+  .+
T Consensus        24 ~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~--~kT~v~~ktlnP~WNE~F~f~v~~--~~   99 (157)
T 2fk9_A           24 TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRV--GQTSTKQKTNKPTYNEEFCANVTD--GG   99 (157)
T ss_dssp             CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--EC
T ss_pred             hccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEee--EEeeecCCCCCCccCcEEEEEcCC--CC
Confidence            345679999999999999998832          6799999999987653  589999999999999999999975  46


Q ss_pred             EEEEEEEEcCCCCCCCeeEEEEEECcccCCC----CceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       329 ~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~----~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                      .|.|+|||+|.+++|++||++.++++++..+    .....|++|.            ..|+|+++++|.
T Consensus       100 ~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~------------~~G~i~l~l~~~  156 (157)
T 2fk9_A          100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE------------PEGKVFVVITLT  156 (157)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB------------SSCEEEEEEEEC
T ss_pred             EEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC------------CCcEEEEEEEEE
Confidence            8999999999999999999999999998854    5677888872            379999999874

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=2.3e-20  Score=163.11  Aligned_cols=126  Identities=35%  Similarity=0.516  Sum_probs=107.4

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEc
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW  337 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~  337 (548)
                      ....+.|.|+|+|++|++|+..|..|.+||||+++++++.   ++|++++++.||.|||+|.|.+.+. .+.|.|+|||+
T Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~   82 (133)
T 2ep6_A            7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE   82 (133)
T ss_dssp             CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred             cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEE---EEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence            4567889999999999999999999999999999999864   5999999999999999999999764 57899999999


Q ss_pred             CCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      |..++|++||++.+++.++..+..  .|++|...     ..+....|+|+++++|..
T Consensus        83 d~~~~~~~lG~~~i~l~~l~~~~~--~w~~L~~~-----~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           83 DGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKNK-----DLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             ETTEEEEECCBCEEEGGGCCSSCC--EECCCBCS-----CTTSCCSSEEEEEEEEEE
T ss_pred             CCCCCCCeeEEEEEEHHHccCCCc--eEEEeecC-----CCCCccceEEEEEEEEEe
Confidence            998899999999999999987654  45565421     112467899999998863

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.83  E-value=3.4e-20  Score=162.70  Aligned_cols=118  Identities=24%  Similarity=0.342  Sum_probs=101.3

Q ss_pred             CceEEEEEEEEecCccccCCCCC-----------CCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEE
Q 008950          262 PVGILHVKVVRASKLLKKDFLGT-----------SDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQIL  330 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~-----------~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L  330 (548)
                      ..|.|+|+|++|++|++.|..++           +||||++++++..  ..+|+++++|+||+|||+|.|.+.+.  +.|
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~--~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L   79 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSPAWHDEFVTDVCNG--RKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeE--eeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence            45999999999999999886554           9999999998654  35899999999999999999999764  789


Q ss_pred             EEEEEEcCCCCCCCeeEEEEEECcccCCCC--ceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950          331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPHE--TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF  395 (548)
Q Consensus       331 ~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~--~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  395 (548)
                      .|+|||+|..++|++||++.++++++..+.  ....|+++            ...|+|+++++|.+.
T Consensus        80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L------------~~~G~i~l~l~~~~~  134 (136)
T 1gmi_A           80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEEE
T ss_pred             EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc------------CCCeEEEEEEEEEec
Confidence            999999999999999999999999998753  23677765            237999999999864

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.82  E-value=3.2e-19  Score=158.86  Aligned_cols=122  Identities=30%  Similarity=0.439  Sum_probs=103.0

Q ss_pred             CCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC
Q 008950          261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV  340 (548)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~  340 (548)
                      ...|.|+|+|++|++|+.+|..|.+||||+++++++.   ++|+++++++||.|||+|.|.+..+ .+.|.|+|||+|..
T Consensus        14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~   89 (148)
T 3kwu_A           14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDD   89 (148)
T ss_dssp             -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCS
T ss_pred             ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEE---EECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCC
Confidence            4569999999999999999999999999999998654   6999999999999999999999765 47899999999985


Q ss_pred             -----------CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          341 -----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       341 -----------~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                                 ++|++||++.+++.++.  .....|++|....     ......|+|+++++|.
T Consensus        90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           90 IKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRT-----DKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSS-----TTCCCCCEEEEEEEEE
T ss_pred             ccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCC-----CCCCCceEEEEEEEEE
Confidence                       78999999999999994  3455677764321     1245789999999885

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.82  E-value=1.6e-19  Score=165.73  Aligned_cols=130  Identities=32%  Similarity=0.498  Sum_probs=100.3

Q ss_pred             cCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCccc---ceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEE
Q 008950          260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD  336 (548)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d  336 (548)
                      ....|.|+|+|++|++|+.+|..|.+||||++++++...   ..++|+++++++||.|||+|.|.+.. ....|.|+|||
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d   82 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFD   82 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEE
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEE
Confidence            346799999999999999999999999999999985322   34799999999999999999999975 45789999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCCCce-E-----EEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPHETK-E-----FTLDLLKHTNISDPKDMKQRGKIVVELTYVPF  395 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~~~~-~-----~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  395 (548)
                      ++.+++|++||++.++|.++..+... .     .|++|....     ...+..|+|++++.|.|.
T Consensus        83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS-----TTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC-----CCCccCEEEEEEEEEEeC
Confidence            99999999999999999999876433 1     566664321     124578999999999997

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.80  E-value=4.3e-19  Score=158.34  Aligned_cols=113  Identities=17%  Similarity=0.257  Sum_probs=99.6

Q ss_pred             CCceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEE
Q 008950          426 SGAGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIH  491 (548)
Q Consensus       426 ~~~g~L~V~v~~a~~L~~~-------------~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~  491 (548)
                      ...|.|+|+|.+|+||+..             +.+||||++.+++++ .+|+++++|.||+|||+|+|.+.+.   ..|.
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~---~~L~  102 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG---GHLE  102 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC---CEEE
Confidence            3579999999999999853             458999999998876 5999999999999999999998753   5899


Q ss_pred             EEEEEccCCccCCCCcceEEEEEechhhhcc----ceeceEEEeCCCCCeEEEEEEEEE
Q 008950          492 IEVMSKRTGIRFWSKESLGHVEINLTDVVHN----GRINEKYHLINSKRGVIHVDIRWK  546 (548)
Q Consensus       492 v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~----~~~~~w~~L~~~~~G~i~l~~~~~  546 (548)
                      |+|||++.   ++.|++||++.|+|+++..+    ...+.||+|..  +|+|+|+++|.
T Consensus       103 ~~V~D~d~---~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~  156 (157)
T 2fk9_A          103 LAVFHETP---LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT  156 (157)
T ss_dssp             EEEEECCS---SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred             EEEEECCC---CCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence            99999874   67899999999999999865    66789999974  89999999985

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.80  E-value=8.5e-19  Score=152.93  Aligned_cols=125  Identities=29%  Similarity=0.438  Sum_probs=99.9

Q ss_pred             CceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC
Q 008950          262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG  341 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~  341 (548)
                      ....|+|+|++|++|+++|..|.+||||++++++.. ..++|+++++|+||+|||+|.|.+.+.  +.|.|+|||+|..+
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~   79 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG-QCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIH   79 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC-CEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTT
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC-ceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCC
Confidence            357899999999999999999999999999998643 357999999999999999999999764  35999999999887


Q ss_pred             C---CCeeEEEEEECcccC-CCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950          342 G---HDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY  392 (548)
Q Consensus       342 ~---dd~lG~~~i~l~~l~-~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~  392 (548)
                      +   |++||++.+++.++. .......+++|... .+.  ......|+|++++++
T Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~-~~~--~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL-NPS--DTDAVRGQIVVSLQT  131 (132)
T ss_dssp             SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS-STT--CCCCCCSEEEEEEEE
T ss_pred             CCCCCCceEEEEEeHHHhhcccccCcEEEeeeec-CCC--CCCceeEEEEEEEEc
Confidence            6   899999999998883 22333455666432 111  123578999999865

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=1.7e-18  Score=152.60  Aligned_cols=118  Identities=25%  Similarity=0.475  Sum_probs=103.5

Q ss_pred             CceEEEEEEeeeecCCCC--CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccCCcc
Q 008950          427 GAGLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIR  502 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~~--~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~  502 (548)
                      ..|.|.|+|++|++|+..  +.+||||++++++++++|++++++.||+|||+|.|.+..+.  ....|.|+|||++.   
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~---   81 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET---   81 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC---
T ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC---
Confidence            468999999999999864  47999999999999999999999999999999999997642  24689999999985   


Q ss_pred             CCCCcceEEEEEechhhhccceeceEEE---eCCCC----CeEEEEEEEEEe
Q 008950          503 FWSKESLGHVEINLTDVVHNGRINEKYH---LINSK----RGVIHVDIRWKM  547 (548)
Q Consensus       503 ~~~d~~lG~~~i~L~~l~~~~~~~~w~~---L~~~~----~G~i~l~~~~~~  547 (548)
                      ++.|++||++.++|.++..+.....||+   |.+..    .|+|+|+++|.|
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p  133 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP  133 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred             CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence            6788999999999999988777788988   65543    499999999987

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.79  E-value=1e-18  Score=151.05  Aligned_cols=115  Identities=20%  Similarity=0.391  Sum_probs=101.1

Q ss_pred             ceEEEEEEeeeecCCCC------CCCCcEEEEEEcC---eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEcc
Q 008950          428 AGLLSVLVQGAEDVEGE------NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR  498 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~------~~~dpyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~  498 (548)
                      .|.|.|+|++|++|+..      +.+||||++++++   ..++|++++++.||+|||+|.|.+..+ ....|.|+|||++
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~d   80 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEECC
Confidence            68999999999999972      6899999999986   678999999999999999999999664 4568999999998


Q ss_pred             CCccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEEe
Q 008950          499 TGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWKM  547 (548)
Q Consensus       499 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~~  547 (548)
                      .   . +|++||++.++|.++..+.....||+|.+.+.|.|+++++..|
T Consensus        81 ~---~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~~~  125 (126)
T 1rlw_A           81 Y---V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS  125 (126)
T ss_dssp             S---S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred             C---C-CCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEeCC
Confidence            4   3 5899999999999998888888999999888888888887543

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.78  E-value=2.8e-19  Score=160.18  Aligned_cols=110  Identities=14%  Similarity=0.093  Sum_probs=94.9

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC---cccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG---EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~---~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~  333 (548)
                      +....+.|+|+|++|+||+++|..|.+||||++++.+   .....+||+++++|+||+|||+|.|.+...  ....|.|+
T Consensus        38 y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~  117 (155)
T 2z0u_A           38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVD  117 (155)
T ss_dssp             EETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred             EcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEE
Confidence            4556799999999999999999999999999999976   333357999999999999999999998642  25689999


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCC-CCceEEEEec
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDL  368 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~-~~~~~~~l~l  368 (548)
                      |||+|..++|++||++.++++++.. +.....|++|
T Consensus       118 V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L  153 (155)
T 2z0u_A          118 VCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL  153 (155)
T ss_dssp             EEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEE
T ss_pred             EEECCCCCCCcEEEEEEEEHHHccCCCCccccceEc
Confidence            9999999999999999999999964 5566677766

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.2e-18  Score=153.81  Aligned_cols=112  Identities=38%  Similarity=0.548  Sum_probs=97.7

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec---CCCCEEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF  335 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~  335 (548)
                      +....+.|+|+|++|++|+.+|..|.+||||++++.+.....++|++++++.||+|||+|.|.+..   .....|.|+||
T Consensus        21 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  100 (141)
T 2d8k_A           21 YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL  100 (141)
T ss_dssp             ECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEE
Confidence            445679999999999999999999999999999997544445799999999999999999998532   23578999999


Q ss_pred             EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 008950          336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK  370 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~  370 (548)
                      |++.+++|++||++.+++.++..+.....|++|..
T Consensus       101 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  135 (141)
T 2d8k_A          101 DYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP  135 (141)
T ss_dssp             ECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred             ECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence            99999999999999999999998888888998854

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.77  E-value=1.4e-18  Score=153.70  Aligned_cols=111  Identities=33%  Similarity=0.434  Sum_probs=98.2

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD  336 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d  336 (548)
                      +....+.|.|+|++|++|+..|..|.+||||++++.+.....++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        29 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  108 (143)
T 3f04_A           29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD  108 (143)
T ss_dssp             EETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence            4456799999999999999999899999999999965444467999999999999999999998632  35799999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      ++.+++|++||++.++|.++..+.....|++|.
T Consensus       109 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  141 (143)
T 3f04_A          109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred             CCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence            999999999999999999999888888898874

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=1.9e-18  Score=154.62  Aligned_cols=111  Identities=33%  Similarity=0.434  Sum_probs=97.8

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD  336 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d  336 (548)
                      +....+.|.|+|++|++|+..|..|.+||||++++.+.....++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        37 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  116 (152)
T 1rsy_A           37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD  116 (152)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence            4456799999999999999999999999999999975443457999999999999999999988642  35789999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      +|.+++|++||++.+++.++..+.....|++|.
T Consensus       117 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  149 (152)
T 1rsy_A          117 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  149 (152)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             CCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence            999999999999999999998888788888874

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.77  E-value=1.7e-18  Score=157.85  Aligned_cols=126  Identities=18%  Similarity=0.262  Sum_probs=102.2

Q ss_pred             CCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC
Q 008950          261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV  340 (548)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~  340 (548)
                      ...+.|+|+|++|++|+..+..+.+||||+++++++   .++|+++++|+||+|||+|.|.+..  .+.|.|+|||+|.+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~---~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~  107 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQ---SKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTL  107 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTE---EEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSS
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCE---EeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCC
Confidence            456899999999999994444455999999999873   4699999999999999999999853  78999999999999


Q ss_pred             CCCCeeEEEEEECcccCCCC-----ceEEEEeccccccCCCCCCCccccEEEEEEEEEecc
Q 008950          341 GGHDRLGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK  396 (548)
Q Consensus       341 ~~dd~lG~~~i~l~~l~~~~-----~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  396 (548)
                      ++|++||++.+++.++..+.     ....|++|...     .......|+|++++.|.+..
T Consensus       108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~-----~~~~~~~G~L~v~l~~l~~~  163 (173)
T 2nq3_A          108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQLE  163 (173)
T ss_dssp             SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEECC
T ss_pred             CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC-----CCCCcccEEEEEEEeeeecc
Confidence            99999999999999986432     12457776542     11346789999999999873

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.77  E-value=2.8e-18  Score=150.04  Aligned_cols=109  Identities=25%  Similarity=0.279  Sum_probs=94.4

Q ss_pred             cCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEE-Eec--CCCCEEEEEE
Q 008950          260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQV  334 (548)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~v  334 (548)
                      ....|.|.|+|++|+||+. +..|.+||||++++.+.  ....++|+++++|+||+|||+|.|. +..  .....|.|+|
T Consensus        16 ~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V   94 (134)
T 2b3r_A           16 SYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSV   94 (134)
T ss_dssp             EEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEE
T ss_pred             eecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEE
Confidence            3456899999999999997 77899999999999543  3345799999999999999999999 753  2457999999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      ||+|.+++|++||++.++++++..+.....|++|.
T Consensus        95 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  129 (134)
T 2b3r_A           95 LSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT  129 (134)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred             EECCCCCCCcEEEEEEEEhhhccCCCCcceeEECC
Confidence            99999999999999999999999888888888874

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.76  E-value=4e-18  Score=149.44  Aligned_cols=117  Identities=21%  Similarity=0.411  Sum_probs=102.3

Q ss_pred             CceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeecc-CCCCCccCceEEEEccCCCCCCeEEEEEEEccCCcc
Q 008950          427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIR  502 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~  502 (548)
                      ..|.|.|+|++|++|+..   +.+||||++++++++++|++++ ++.||+|||+|.|.+.+  ....|.|+|||++.   
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~---   82 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDV---   82 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSS---
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCC---
Confidence            579999999999999873   5799999999999999999998 89999999999999987  35689999999984   


Q ss_pred             CCCCcceEEEEEechhhhcc-ceeceEEEeCCC--CCeEEEEEEEEEeC
Q 008950          503 FWSKESLGHVEINLTDVVHN-GRINEKYHLINS--KRGVIHVDIRWKMI  548 (548)
Q Consensus       503 ~~~d~~lG~~~i~L~~l~~~-~~~~~w~~L~~~--~~G~i~l~~~~~~~  548 (548)
                      ++.|++||++.++|.++... .....||+|...  ..|+|+|+++|.|.
T Consensus        83 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~  131 (136)
T 1wfj_A           83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence            67899999999999999554 445789999632  47999999999983

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.75  E-value=7.2e-18  Score=148.21  Aligned_cols=112  Identities=25%  Similarity=0.377  Sum_probs=94.3

Q ss_pred             ccCCceEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEE-EecC--CCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VKEP--ESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~v  334 (548)
                      +....+.|.|+|++|++|+.+|.. |.+||||++++.+.....++|+++++++||+|||+|.|. +...  ....|.|+|
T Consensus        17 y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V   96 (138)
T 1ugk_A           17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI   96 (138)
T ss_dssp             EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence            345679999999999999999985 899999999998644456899999999999999999996 5432  346899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCc-eEEEEeccc
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLK  370 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~-~~~~l~l~~  370 (548)
                      ||+|.+++|++||++.+++.++..+.. ...|.++.+
T Consensus        97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             EECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            999999999999999999999987643 456677743

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.75  E-value=2.3e-17  Score=144.97  Aligned_cols=121  Identities=16%  Similarity=0.113  Sum_probs=102.0

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCCCCCCcEEEEEEcC--
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG--  457 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~--  457 (548)
                      ....|+|++++.|.+.                                .+.|.|+|++|++....+.+||||++++..  
T Consensus         9 ~~~~G~l~~sl~y~~~--------------------------------~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~   56 (138)
T 1wfm_A            9 WNQAPKLHYCLDYDCQ--------------------------------KAELFVTRLEAVTSNHDGGCDCYVQGSVANRT   56 (138)
T ss_dssp             CSSCCEEEEEEEEETT--------------------------------TTEEEEEEEEEECCCCSSCCCEEEEEEEEETT
T ss_pred             CCcceEEEEEEEEeCC--------------------------------CCEEEEEEEEEEcCCCCCCcceEEEEEEEcCC
Confidence            4567999999999853                                578999999999776677899999999942  


Q ss_pred             --eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       458 --~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                        ..++|++++++.||+|||+|.|.+..... ...|.|+|||++.   ++.|++||++.++|.++.......+||+|...
T Consensus        57 ~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~---~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~  133 (138)
T 1wfm_A           57 GSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR---FSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             EEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS---SCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             CcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC---CCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence              24699999999999999999999875432 3589999999985   67899999999999998655666899999875


Q ss_pred             C
Q 008950          535 K  535 (548)
Q Consensus       535 ~  535 (548)
                      .
T Consensus       134 ~  134 (138)
T 1wfm_A          134 G  134 (138)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.75  E-value=7.3e-18  Score=150.92  Aligned_cols=124  Identities=18%  Similarity=0.301  Sum_probs=101.6

Q ss_pred             CCccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC--CCCCcEEEEEEc
Q 008950          379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE--NHNNPYAIILYK  456 (548)
Q Consensus       379 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~--~~~dpyv~v~l~  456 (548)
                      .....|++.+++.|.+.                                .+.|.|+|++|++|+..  +.+||||++++.
T Consensus         9 ~~~~~G~~~lsL~y~~~--------------------------------~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~   56 (153)
T 3fbk_A            9 SHKVQGAGQLRLSIDAQ--------------------------------DRVLLLHIIEGKGLISKQPGTCDPYVKISLI   56 (153)
T ss_dssp             ----CCCCEEEEEEEES--------------------------------SSEEEEEEEEEESCCCCSSSCCCEEEEEEEE
T ss_pred             ccCCCCEEEEEEEEECC--------------------------------CCEEEEEEEEeeCCCCCCCCCCCEEEEEEEE
Confidence            35678999999999974                                68999999999999864  579999999993


Q ss_pred             -----CeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC-CcceEEEEEechhhhc-cceeceEE
Q 008950          457 -----GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS-KESLGHVEINLTDVVH-NGRINEKY  529 (548)
Q Consensus       457 -----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~-d~~lG~~~i~L~~l~~-~~~~~~w~  529 (548)
                           ..+++|++++++.||+|||+|.|.+........|.|+|||++.   ++. |++||++.++|.++.. +....+||
T Consensus        57 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~---~~~~d~~lG~~~i~l~~l~~~~~~~~~W~  133 (153)
T 3fbk_A           57 PEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS---QSRQSGLIGCMSFGVKSLLTPDKEISGWY  133 (153)
T ss_dssp             SCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS---SGGGCEEEEEEEEEHHHHTC--CCEEEEE
T ss_pred             cCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC---CCCCCcEEEEEEEEHHHhcCCCCccccEE
Confidence                 3457999999999999999999998543344579999999985   455 8999999999999985 56778999


Q ss_pred             EeCCCCCe
Q 008950          530 HLINSKRG  537 (548)
Q Consensus       530 ~L~~~~~G  537 (548)
                      +|.+...|
T Consensus       134 ~L~~~~~g  141 (153)
T 3fbk_A          134 YLLGEHLG  141 (153)
T ss_dssp             ECBCTTGG
T ss_pred             ECCChhhc
Confidence            99886543

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.75  E-value=1.7e-17  Score=148.45  Aligned_cols=117  Identities=19%  Similarity=0.371  Sum_probs=97.9

Q ss_pred             CCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC------eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEE
Q 008950          426 SGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS  496 (548)
Q Consensus       426 ~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d  496 (548)
                      ...+.|+|+|++|++|+..   +.+||||++++.+      ..++|++++++.||+|||+|.|.+...  ...|.|+|||
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~l~~~V~d   94 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ--QHRLLFEVFD   94 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT--TCEEEEEEEE
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC--CCEEEEEEEE
Confidence            4579999999999999863   5789999999974      467999999999999999999999863  4689999999


Q ss_pred             ccCCccCCCCcceEEEEEechhhhcccee------ceEEEeCCC-----CCeEEEEEEEEEe
Q 008950          497 KRTGIRFWSKESLGHVEINLTDVVHNGRI------NEKYHLINS-----KRGVIHVDIRWKM  547 (548)
Q Consensus       497 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~------~~w~~L~~~-----~~G~i~l~~~~~~  547 (548)
                      ++.   ++.|++||++.++|.++......      .+||+|...     ..|+|+|+++|.|
T Consensus        95 ~d~---~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           95 ENR---LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CCS---SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CCC---CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            985   67899999999999999775432      589999653     3799999999976

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.74  E-value=1.1e-17  Score=146.08  Aligned_cols=114  Identities=25%  Similarity=0.445  Sum_probs=100.4

Q ss_pred             CCceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCcc
Q 008950          426 SGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIR  502 (548)
Q Consensus       426 ~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~  502 (548)
                      ...|.|.|+|++|++|+..   +.+||||++++++++++|++++++.||+|||+|.|.+.+.  .+.|.++|||++.   
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~--~~~l~i~V~d~d~---   84 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG---   84 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET---
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC--CCEEEEEEEECCC---
Confidence            3579999999999999863   5799999999999999999999999999999999999864  4689999999985   


Q ss_pred             CCCCcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEE
Q 008950          503 FWSKESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDIRWK  546 (548)
Q Consensus       503 ~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~  546 (548)
                      .+.|++||++.++|.++..+.  .+||+|.+.     ..|+|+|+++|.
T Consensus        85 ~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           85 DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             TEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             CCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEE
Confidence            567899999999999987644  589999753     479999999985

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.74  E-value=5.9e-18  Score=149.53  Aligned_cols=111  Identities=31%  Similarity=0.442  Sum_probs=96.5

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEE-EecC--CCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKEP--ESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~  333 (548)
                      +....+.|.|+|++|++|+..+..|.+||||++++.+.  ....++|++++++.||+|||+|.|. +...  ....|.|+
T Consensus        24 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~  103 (142)
T 2chd_A           24 YDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS  103 (142)
T ss_dssp             EEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEE
Confidence            34567999999999999999999999999999999753  2345799999999999999999998 5421  13689999


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      |||++..++|++||++.++++++..++.+.+|++|.
T Consensus       104 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  139 (142)
T 2chd_A          104 VCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE  139 (142)
T ss_dssp             EEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred             EEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence            999999999999999999999999998889998874

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.74  E-value=3.6e-17  Score=145.54  Aligned_cols=117  Identities=24%  Similarity=0.442  Sum_probs=99.5

Q ss_pred             CCceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC--
Q 008950          426 SGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG--  500 (548)
Q Consensus       426 ~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~--  500 (548)
                      ...|.|.|+|++|++|+..   +.+||||++++++..++|++++++.||.|||+|.|.+..+  .+.|.++|||++..  
T Consensus        14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~~~   91 (148)
T 3kwu_A           14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS--SDRIKVRVLDEDDDIK   91 (148)
T ss_dssp             -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST--TCEEEEEEEECCCSHH
T ss_pred             ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC--CCEEEEEEEECCCCcc
Confidence            3579999999999999873   5799999999999999999999999999999999999875  36899999999841  


Q ss_pred             ------ccCCCCcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEE
Q 008950          501 ------IRFWSKESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDIRWK  546 (548)
Q Consensus       501 ------~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~  546 (548)
                            .+.+.|++||++.++|.++  .....+||+|...     ..|+|+|++++.
T Consensus        92 ~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           92 SRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             ccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                  0016799999999999998  3455799999843     369999999885

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.74  E-value=1.3e-17  Score=146.12  Aligned_cols=112  Identities=21%  Similarity=0.344  Sum_probs=97.8

Q ss_pred             ceEEEEEEeeeecCCCCC--------------CCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEE
Q 008950          428 AGLLSVLVQGAEDVEGEN--------------HNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHI  492 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~~--------------~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v  492 (548)
                      .|.|+|+|++|++|+..+              .+||||++++++.. .+|+++++|.||+|||+|+|.+.+.   +.|.+
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L~~   81 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIEL   81 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEEE
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEEEE
Confidence            689999999999998531              28999999998876 5999999999999999999998764   68999


Q ss_pred             EEEEccCCccCCCCcceEEEEEechhhhccc--eeceEEEeCCCCCeEEEEEEEEEe
Q 008950          493 EVMSKRTGIRFWSKESLGHVEINLTDVVHNG--RINEKYHLINSKRGVIHVDIRWKM  547 (548)
Q Consensus       493 ~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~--~~~~w~~L~~~~~G~i~l~~~~~~  547 (548)
                      +|||++.   ++.|++||++.++|.++..+.  ..+.|++|.  +.|+|+|+++|.+
T Consensus        82 ~V~d~d~---~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~i~l~l~~~~  133 (136)
T 1gmi_A           82 AVFHDAP---IGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEECCS---SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             EEEeCCC---CCCCCEEEEEEEEHHHhcccCCCCccEEEEcC--CCeEEEEEEEEEe
Confidence            9999984   678999999999999998753  458899987  4899999999975

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=9.2e-18  Score=148.03  Aligned_cols=122  Identities=25%  Similarity=0.427  Sum_probs=101.8

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEE-
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILY-  455 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l-  455 (548)
                      +...|+|++++.|.+.                                .+.|.|+|++|++|+..   +.+||||++++ 
T Consensus         4 ~~~~G~i~~~l~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~   51 (141)
T 1v27_A            4 GSSGGQLSIKLWFDKV--------------------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFL   51 (141)
T ss_dssp             CCCCCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCCSSSCCCCEEEECCCS
T ss_pred             CCcccEEEEEEEEeCC--------------------------------CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEe
Confidence            4568999999999863                                57899999999999863   56899999999 


Q ss_pred             ----cCeEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccCCccCCC--CcceEEEEEechhhhccceece
Q 008950          456 ----KGDKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIRFWS--KESLGHVEINLTDVVHNGRINE  527 (548)
Q Consensus       456 ----~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~--d~~lG~~~i~L~~l~~~~~~~~  527 (548)
                          ....++|++++++.||+|||+|.|.+....  ....|.|+|||++.   ++.  +++||++.++|.++.... ..+
T Consensus        52 ~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~---~~~~~~~~lG~~~i~l~~l~~~~-~~~  127 (141)
T 1v27_A           52 PDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR---VREEESEFLGEILIELETALLDD-EPH  127 (141)
T ss_dssp             SCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCS---SSSCCBCCCEEEEEEGGGCCCSS-EEE
T ss_pred             cCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCC---CcCCCCceEEEEEEEccccCCCC-CCc
Confidence                345679999999999999999999953321  23589999999985   454  899999999999987655 689


Q ss_pred             EEEeCCCCCe
Q 008950          528 KYHLINSKRG  537 (548)
Q Consensus       528 w~~L~~~~~G  537 (548)
                      ||+|.+...|
T Consensus       128 W~~L~~~~~g  137 (141)
T 1v27_A          128 WYKLQTHDSG  137 (141)
T ss_dssp             EEECBCCSSC
T ss_pred             eEECcccccC
Confidence            9999877655

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.74  E-value=1.2e-17  Score=148.63  Aligned_cols=121  Identities=21%  Similarity=0.339  Sum_probs=103.0

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC----CCCCCcEEEEEE
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILY  455 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~----~~~~dpyv~v~l  455 (548)
                      ...+|+|.+++.|.+.                                .+.|.|+|++|+||+.    .+.+||||++++
T Consensus         6 ~~~~G~l~~sl~y~~~--------------------------------~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l   53 (148)
T 3fdw_A            6 IFVTGRIAFSLKYEQQ--------------------------------TQSLVVHVKECHQLAYADEAKKRSNPYVKTYL   53 (148)
T ss_dssp             CCCCCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEE
T ss_pred             CccceEEEEEEEEeCC--------------------------------CCEEEEEEEEecCCCCcccCCCCCCeEEEEEE
Confidence            4578999999999863                                5899999999999985    357999999999


Q ss_pred             c-----CeEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEE
Q 008950          456 K-----GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKY  529 (548)
Q Consensus       456 ~-----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~  529 (548)
                      .     ..+++|++++++.||+|||+|.|.+..... ...|.|+|||++.   ++.|++||++.++|.++..+....+||
T Consensus        54 ~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~---~~~~~~iG~~~i~l~~l~~~~~~~~W~  130 (148)
T 3fdw_A           54 LPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGR---FGRNTFLGEAEIQMDSWKLDKKLDHCL  130 (148)
T ss_dssp             ETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECG---GGCEEEEEEEEEEHHHHHHHCCSEEEE
T ss_pred             EcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCC---CcCCcEEEEEEEEcccccccCCccceE
Confidence            6     346799999999999999999999876432 3479999999884   678999999999999998777778999


Q ss_pred             EeCCCC
Q 008950          530 HLINSK  535 (548)
Q Consensus       530 ~L~~~~  535 (548)
                      +|.+.+
T Consensus       131 ~L~~~~  136 (148)
T 3fdw_A          131 PLHGKI  136 (148)
T ss_dssp             ECBCC-
T ss_pred             ECcCcc
Confidence            998753

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=2.4e-17  Score=145.43  Aligned_cols=121  Identities=23%  Similarity=0.305  Sum_probs=102.1

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK  456 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~  456 (548)
                      ....|+|++++.|.+.                                .+.|.|+|++|++|+..   +.+||||++++.
T Consensus         9 ~~~~G~l~~~l~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~   56 (141)
T 2d8k_A            9 RENLGRIQFSVGYNFQ--------------------------------ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL   56 (141)
T ss_dssp             CCCCCEEEEEEEECSS--------------------------------SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEE
T ss_pred             CceeeEEEEEEEEeCC--------------------------------CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEE
Confidence            4568999999999863                                57899999999999873   579999999995


Q ss_pred             ---CeEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950          457 ---GDKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL  531 (548)
Q Consensus       457 ---~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L  531 (548)
                         ...++|++++++.||+|||+|.|.+....  ....|.|+|||++.   ++.|++||++.++|.++..+.....||+|
T Consensus        57 ~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~---~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  133 (141)
T 2d8k_A           57 PDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR---FSRNDPIGEVSIPLNKVDLTQMQTFWKDL  133 (141)
T ss_dssp             SCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS---SSSCEEEEEEEEETTTSCTTSCEEEEECC
T ss_pred             CCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC---CCCCcEEEEEEEEhhhhcCCCCccEEEEC
Confidence               35679999999999999999999853311  24589999999985   67899999999999999887777899999


Q ss_pred             CCCC
Q 008950          532 INSK  535 (548)
Q Consensus       532 ~~~~  535 (548)
                      ...+
T Consensus       134 ~~~~  137 (141)
T 2d8k_A          134 KPSG  137 (141)
T ss_dssp             EECC
T ss_pred             cCCC
Confidence            8654

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.74  E-value=1.3e-17  Score=149.23  Aligned_cols=120  Identities=22%  Similarity=0.285  Sum_probs=102.0

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK  456 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~  456 (548)
                      ....|+|++++.|.+.                                .+.|.|+|++|+||+..   +.+||||++++.
T Consensus        25 ~~~~G~l~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~   72 (152)
T 1rsy_A           25 EEKLGKLQYSLDYDFQ--------------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLL   72 (152)
T ss_dssp             -CCCCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred             CCCceEEEEEEEEeCC--------------------------------CCEEEEEEEEeECCCCccCCCCcCeEEEEEEE
Confidence            4567999999999863                                57899999999999863   578999999994


Q ss_pred             ---CeEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          457 ---GDKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       457 ---~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                         .+.++|++++++.||+|||+|.|.+.... ....|.|+|||++.   ++.|++||++.++|.++..+....+||+|.
T Consensus        73 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~---~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  149 (152)
T 1rsy_A           73 PDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR---FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  149 (152)
T ss_dssp             TTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS---SSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             cCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC---CCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence               45679999999999999999999886421 23689999999985   678999999999999997777778999998


Q ss_pred             CC
Q 008950          533 NS  534 (548)
Q Consensus       533 ~~  534 (548)
                      +.
T Consensus       150 ~~  151 (152)
T 1rsy_A          150 SA  151 (152)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.74  E-value=9.3e-18  Score=145.62  Aligned_cols=109  Identities=23%  Similarity=0.343  Sum_probs=87.4

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEec---CCCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~  333 (548)
                      +....|.|.|+|++|++|+.+|..|.+||||++++.+.  ....++|++++++.||+|||+|.|.+..   .....|.|+
T Consensus        13 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~   92 (129)
T 2bwq_A           13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT   92 (129)
T ss_dssp             EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred             EccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEE
Confidence            44566999999999999999999999999999999542  2345799999999999999999999532   235799999


Q ss_pred             EEEcCCCCC--CCeeEEEEEECcccCCCCceEEEEec
Q 008950          334 VFDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       334 v~d~d~~~~--dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      |||++..++  |++||++.+++.++.... ...|++|
T Consensus        93 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L  128 (129)
T 2bwq_A           93 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKL  128 (129)
T ss_dssp             EEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             EEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence            999999887  999999999999987654 5667665

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=1.6e-17  Score=146.04  Aligned_cols=109  Identities=21%  Similarity=0.195  Sum_probs=92.2

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc-ccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF  335 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~  335 (548)
                      +....+.|+|+|++|++   +|..|.+||||++++.+. ....++|+++++|+||+|||+|.|.+...  ....|.|+||
T Consensus        21 y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~   97 (138)
T 1wfm_A           21 YDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR   97 (138)
T ss_dssp             EETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred             EeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEE
Confidence            45567999999999993   677899999999999642 23347899999999999999999998643  2568999999


Q ss_pred             EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 008950          336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK  370 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~  370 (548)
                      |+|.+++|++||++.++|.++..+.....|++|..
T Consensus        98 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A           98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             ECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            99999999999999999999986667778888753

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.73  E-value=1.9e-17  Score=143.71  Aligned_cols=115  Identities=25%  Similarity=0.439  Sum_probs=94.3

Q ss_pred             cccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEE---
Q 008950          382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILY---  455 (548)
Q Consensus       382 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l---  455 (548)
                      ..|+|.+++.|.+.                                .+.|.|+|++|+||+..   +.+||||++++   
T Consensus         3 ~~G~l~~~l~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~   50 (129)
T 2bwq_A            3 LSGQLSIKLWFDKV--------------------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPD   50 (129)
T ss_dssp             CCCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESS
T ss_pred             eeEEEEEEEEEccC--------------------------------CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecC
Confidence            57999999999863                                58999999999999873   46899999999   


Q ss_pred             --cCeEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccCCccCCC--CcceEEEEEechhhhccceeceEE
Q 008950          456 --KGDKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIRFWS--KESLGHVEINLTDVVHNGRINEKY  529 (548)
Q Consensus       456 --~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~--d~~lG~~~i~L~~l~~~~~~~~w~  529 (548)
                        +...++|++++++.||+|||+|.|.+....  ....|.|+|||++.   .+.  +++||++.++|.++...+ ..+||
T Consensus        51 ~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~---~~~~~~~~lG~~~i~l~~l~~~~-~~~W~  126 (129)
T 2bwq_A           51 RSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR---VREEESEFLGEILIELETALLDD-EPHWY  126 (129)
T ss_dssp             CSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC----------CEEEEEEEEEGGGCCCSS-CEEEE
T ss_pred             CCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCc---CcCcCCceeEEEEEEccccCCCc-CCccE
Confidence              456789999999999999999999963321  23589999999985   454  899999999999987755 68999


Q ss_pred             EeC
Q 008950          530 HLI  532 (548)
Q Consensus       530 ~L~  532 (548)
                      +|+
T Consensus       127 ~Lq  129 (129)
T 2bwq_A          127 KLQ  129 (129)
T ss_dssp             ECC
T ss_pred             ECc
Confidence            984

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.73  E-value=4.8e-18  Score=151.22  Aligned_cols=112  Identities=24%  Similarity=0.351  Sum_probs=96.7

Q ss_pred             ccCCceEEEEEEEEecCccccC-CCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~  333 (548)
                      +....|.|.|+|++|++|+..| ..|.+||||++++.+..  ...++|+++++|+||+|||+|.|.+...  ....|.|+
T Consensus        18 y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~   97 (148)
T 3fdw_A           18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS   97 (148)
T ss_dssp             EETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence            4556799999999999999988 67999999999997543  3367999999999999999999998653  24579999


Q ss_pred             EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 008950          334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK  370 (548)
Q Consensus       334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~  370 (548)
                      |||+|.+++|++||++.++|.++..+.....|++|..
T Consensus        98 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  134 (148)
T 3fdw_A           98 VWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHG  134 (148)
T ss_dssp             EEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBC
T ss_pred             EEECCCCcCCcEEEEEEEEcccccccCCccceEECcC
Confidence            9999999999999999999999987767778888854

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.73  E-value=7.7e-18  Score=150.08  Aligned_cols=107  Identities=21%  Similarity=0.463  Sum_probs=91.2

Q ss_pred             eEEEEEEeeeecCCCC---CCCCcEEEEEEc-----CeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC
Q 008950          429 GLLSVLVQGAEDVEGE---NHNNPYAIILYK-----GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG  500 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~---~~~dpyv~v~l~-----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~  500 (548)
                      +.|.|+|++|++|+..   +.+||||++++.     ...++|++++++.||+|||+|.|.+........|.|+|||++. 
T Consensus        31 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~-  109 (149)
T 1a25_A           31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL-  109 (149)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS-
T ss_pred             CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC-
Confidence            6799999999999863   578999999997     3568999999999999999999999764334689999999985 


Q ss_pred             ccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEE
Q 008950          501 IRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVI  539 (548)
Q Consensus       501 ~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i  539 (548)
                        ++.|++||++.++|.++..+. ..+||+|.+...|++
T Consensus       110 --~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~~~g~~  145 (149)
T 1a25_A          110 --TSRNDFMGSLSFGISELQKAG-VDGWFKLLSQEEGEY  145 (149)
T ss_dssp             --SSCCEEEEEEEEEHHHHTTCC-EEEEEECBCHHHHTT
T ss_pred             --CCCCCEEEEEEEEHHHhCcCc-cCCeEEccCCCCCcc
Confidence              678999999999999998764 679999987655543

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=7.3e-18  Score=149.88  Aligned_cols=111  Identities=27%  Similarity=0.365  Sum_probs=93.4

Q ss_pred             ccCCceEEEEEEEEecCcccc-CC------CCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCE
Q 008950          259 IKKPVGILHVKVVRASKLLKK-DF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQI  329 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~-d~------~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~  329 (548)
                      +....|.|.|+|++|++|+.. |.      .|.+||||++++.+.....++|++++++.||+|||+|.|.+...  ....
T Consensus        21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~  100 (147)
T 2enp_A           21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT  100 (147)
T ss_dssp             EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred             EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence            455679999999999999984 43      35899999999986443457999999999999999999998632  2458


Q ss_pred             EEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       330 L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      |.|+|||++.+++|++||++.++|.++........|+.|.
T Consensus       101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~  140 (147)
T 2enp_A          101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI  140 (147)
T ss_dssp             EEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred             EEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence            9999999999999999999999999998776666777774

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.72  E-value=2.2e-16  Score=167.74  Aligned_cols=177  Identities=23%  Similarity=0.312  Sum_probs=134.8

Q ss_pred             eeEEEEEcCCCc-eEEEEEEEccccccc-cchhHHHHHHHHHHHhhhcccC-----Cceee-eeccc-------------
Q 008950          195 FATMVVSLMERP-HVDFGIKILGGDIMS-IPGLYQFIQKCITKYVAGIYIW-----PQTYE-IPILD-------------  253 (548)
Q Consensus       195 ~~~~~~~f~~~P-~id~~~~~~g~~~~~-~P~l~~~i~~~i~~~~~~~~v~-----P~~~~-~~l~~-------------  253 (548)
                      +..|.=|+...| -|+|.+.|+ .++.. -+-....++.++.+++.+.-.+     |-.-- .++..             
T Consensus       304 ~~~W~~Sv~~~P~~I~~~l~PI-~~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~~t  382 (540)
T 3nsj_A          304 FSTWTASLPSNPGLVDYSLEPL-HTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVT  382 (540)
T ss_dssp             HHHHHHHTTTSCEEEEEEEEEG-GGGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEEECSSCTTCEEESCTTTB
T ss_pred             HHHHHHHHhhCCceEEEEEEEH-HHhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCccCCCCceEeeCCCCCCc
Confidence            455555666677 459999998 55543 4666789999999999987776     42111 11211             


Q ss_pred             -cccccccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec-CCCCEEE
Q 008950          254 -ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PESQILQ  331 (548)
Q Consensus       254 -~~~~~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~~~~L~  331 (548)
                       ....+.....|.|+|+|++|++|+. |..|++||||+++++++.   ++|+++++++||+|||+|.|.+.+ ...+.|+
T Consensus       383 ~~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~---~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~  458 (540)
T 3nsj_A          383 NQDCCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFENVLLSTGGPLR  458 (540)
T ss_dssp             CGGGCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEE---EECCCBCSCSSCBCCCCEEEEEEETTTCCCEE
T ss_pred             ccccccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEe---eeeeeecCCCCCCCCeEEEEEEecCCCCCEEE
Confidence             1112345568999999999999999 999999999999999754   799999999999999999998653 3578899


Q ss_pred             EEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          332 LQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       332 v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                      |+|||+|..++||+||++.++|..   + .++.|..+             ..|.|+++++..
T Consensus       459 ~~V~D~D~~~~dD~LG~~~~~L~~---g-~~~~~~~l-------------~~G~l~~~~~~~  503 (540)
T 3nsj_A          459 VQVWDADYGWDDDLLGSCDRSPHS---G-FHEVTCEL-------------NHGRVKFSYHAK  503 (540)
T ss_dssp             EEEEECCSSSCCEEEEEEEECCCS---E-EEEEEEEC-------------SSSEEEEEEEEE
T ss_pred             EEEEECCCCCCCCEEEEEEEEeeC---C-cEEEEEEc-------------CCeEEEEEEEEE
Confidence            999999999999999999999882   2 34556554             358888887644

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=2.1e-17  Score=146.86  Aligned_cols=121  Identities=25%  Similarity=0.278  Sum_probs=101.5

Q ss_pred             CCccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC----------CCCC
Q 008950          379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----------NHNN  448 (548)
Q Consensus       379 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----------~~~d  448 (548)
                      .....|+|++++.|.+.                                .+.|.|+|++|+||+..          +.+|
T Consensus         8 ~~~~~G~l~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~d   55 (147)
T 2enp_A            8 SKYQLGMLHFSTQYDLL--------------------------------HNHLTVRVIEARDLPPPISHDGSRQDMAHSN   55 (147)
T ss_dssp             SCCCCCEEEEEEEEETT--------------------------------TTEEEEEEEEEECCCCSCSSCCSSCTTCCCC
T ss_pred             CCCcceEEEEEEEEcCC--------------------------------CCEEEEEEEEEeCCCCccccccccccCCCCC
Confidence            35678999999999864                                58999999999999863          3699


Q ss_pred             cEEEEEEcC---eEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccce
Q 008950          449 PYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR  524 (548)
Q Consensus       449 pyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~  524 (548)
                      |||++++..   ..++|++++++.||+|||+|.|.+.... ....|.|+|||++.   ++.+++||++.++|.++.....
T Consensus        56 pyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~---~~~~~~iG~~~i~l~~l~~~~~  132 (147)
T 2enp_A           56 PYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDK---FSRHCVIGKVSVPLCEVDLVKG  132 (147)
T ss_dssp             CEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCST---TCCSCCCEEEEEETTTSCTTTC
T ss_pred             cEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCC---CcCCcEEEEEEEechhcCCCCC
Confidence            999999963   5679999999999999999999876421 12489999999985   6788999999999999977666


Q ss_pred             eceEEEeCCC
Q 008950          525 INEKYHLINS  534 (548)
Q Consensus       525 ~~~w~~L~~~  534 (548)
                      ...||+|...
T Consensus       133 ~~~w~~L~~~  142 (147)
T 2enp_A          133 GHWWKALIPS  142 (147)
T ss_dssp             CCEEECCBCC
T ss_pred             ccEEEEeecC
Confidence            6788888754

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=2.7e-17  Score=146.56  Aligned_cols=107  Identities=35%  Similarity=0.501  Sum_probs=92.8

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCC-CCEEEEEEEEcCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWDK  339 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d~  339 (548)
                      .+.|.|+|++|++|+..|..|.+||||++++.+..  ...++|++++++.||+|||+|.|.+.... ...|.|+|||+|.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            48899999999999999999999999999998532  33579999999999999999999987532 4689999999999


Q ss_pred             CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 008950          340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK  370 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~  370 (548)
                      .++|++||++.+++.++..+ ....|++|..
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~  139 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS  139 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence            99999999999999999876 4667888743

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.72  E-value=9.5e-18  Score=150.19  Aligned_cols=129  Identities=22%  Similarity=0.327  Sum_probs=101.7

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK  456 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~  456 (548)
                      ....|+|.+++.|.|.                                .+.|.|+|++|+||+..   +.+||||++++.
T Consensus        13 ~~~~G~l~~~l~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~   60 (153)
T 1w15_A           13 PSGRGELLVSLCYQST--------------------------------TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLY   60 (153)
T ss_dssp             ---CCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCC------CCCEEEEEEEE
T ss_pred             CccccEEEEEEEEcCC--------------------------------CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEE
Confidence            4578999999999974                                58999999999999863   578999999994


Q ss_pred             --Ce---EEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEE
Q 008950          457 --GD---KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYH  530 (548)
Q Consensus       457 --~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~  530 (548)
                        +.   +++|++++++.||+|||+|.|.+..... ...|.|+|||++.   ++.|++||++.+++++  ......+||+
T Consensus        61 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~---~~~~~~lG~~~i~l~~--~~~~~~~W~~  135 (153)
T 1w15_A           61 HAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER---GSRNEVIGRLVLGATA--EGSGGGHWKE  135 (153)
T ss_dssp             ETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT---TSCCEEEEEEEESTTC--CSHHHHHHHH
T ss_pred             eCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCC---CCCCcEEEEEEECCCC--CchHHHHHHH
Confidence              33   5699999999999999999999876533 2589999999984   6789999999999988  3334567888


Q ss_pred             eCCCCCeEEEEEEEEEeC
Q 008950          531 LINSKRGVIHVDIRWKMI  548 (548)
Q Consensus       531 L~~~~~G~i~l~~~~~~~  548 (548)
                      |.+.+...+.   +|+++
T Consensus       136 l~~~p~~~~~---~Wh~L  150 (153)
T 1w15_A          136 ICDFPRRQIA---KWHML  150 (153)
T ss_dssp             HHHSTTCCEE---EEEEC
T ss_pred             HHhCCCCeee---ecccc
Confidence            8776666555   77764

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.72  E-value=1.2e-17  Score=151.70  Aligned_cols=128  Identities=25%  Similarity=0.435  Sum_probs=102.6

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK  456 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~  456 (548)
                      ....|+|.+++.|.+.                                .+.|.|+|++|++|+..   +.+||||++++.
T Consensus        20 ~~~~G~l~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~   67 (166)
T 2cm5_A           20 IEERGKILVSLMYSTQ--------------------------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLK   67 (166)
T ss_dssp             CCCCCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred             cCccceEEEEEEEECC--------------------------------CCEEEEEEEEeECCCCccCCCCCCcEEEEEEE
Confidence            4578999999999863                                57999999999999863   579999999997


Q ss_pred             C-----eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEE
Q 008950          457 G-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYH  530 (548)
Q Consensus       457 ~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~  530 (548)
                      +     ..++|++++++.||+|||+|.|.+..... ...|.|+|||++.   ++.+++||++.+++.++..  ...+||+
T Consensus        68 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~---~~~~~~iG~~~i~l~~~~~--~~~~W~~  142 (166)
T 2cm5_A           68 PDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI---GKSNDYIGGCQLGISAKGE--RLKHWYE  142 (166)
T ss_dssp             TC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS---SSCCEEEEEEEEETTCCHH--HHHHHHH
T ss_pred             CCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCC---CCCCcEEEeEEEecccCCc--hhHHHHH
Confidence            6     56799999999999999999999865322 3589999999985   6789999999999998643  2345666


Q ss_pred             eCCCCCeEEEEEEEEEe
Q 008950          531 LINSKRGVIHVDIRWKM  547 (548)
Q Consensus       531 L~~~~~G~i~l~~~~~~  547 (548)
                      |.+.+++.+.   +|++
T Consensus       143 l~~~~~~~~~---~Wh~  156 (166)
T 2cm5_A          143 CLKNKDKKIE---RWHQ  156 (166)
T ss_dssp             HHHCTTCCEE---EEEE
T ss_pred             HHhCCCCcce---EeeE
Confidence            6655554444   5554

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=1.1e-17  Score=147.81  Aligned_cols=111  Identities=29%  Similarity=0.306  Sum_probs=92.7

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v  334 (548)
                      +....+.|.|+|++|++|+.+|..| +||||++++.+..  ...++|+++++|+||+|||+|.|.+...  ....|.|+|
T Consensus        19 y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V   97 (142)
T 2dmg_A           19 HSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAV   97 (142)
T ss_dssp             EETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEE
Confidence            4456799999999999999999889 9999999996432  2457999999999999999999998532  245899999


Q ss_pred             EEcCCCCC--CCeeEEEEEECcccCCCCceEEEEeccc
Q 008950          335 FDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDLLK  370 (548)
Q Consensus       335 ~d~d~~~~--dd~lG~~~i~l~~l~~~~~~~~~l~l~~  370 (548)
                      ||++.+++  |++||++.+++.++..+.....|++|..
T Consensus        98 ~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~  135 (142)
T 2dmg_A           98 KNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE  135 (142)
T ss_dssp             EECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred             EECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence            99998763  5799999999999987766667777753

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=5.9e-18  Score=149.52  Aligned_cols=107  Identities=28%  Similarity=0.443  Sum_probs=92.7

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCccc-----------ceeeeeeecCCCCCeeeceEEEE-Ee--cCCCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL-----------PWKKTTVKKKNLNPEWNENFKLV-VK--EPESQ  328 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~-----------~~~~T~v~~~t~nP~Wne~f~f~-v~--~~~~~  328 (548)
                      .|.|.|+|++|++|+.+|..|.+||||++++.+...           ..++|+++++|+||+|||+|.|. +.  +....
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            589999999999999999999999999999987531           24689999999999999999997 53  22467


Q ss_pred             EEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       329 ~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      .|.|+|||+|.+++|++||++.++++++..+.....|++|.
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  137 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK  137 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECB
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECC
Confidence            99999999999999999999999999998766667788874

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.72  E-value=3.7e-17  Score=144.58  Aligned_cols=118  Identities=23%  Similarity=0.307  Sum_probs=101.5

Q ss_pred             ccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEE--
Q 008950          381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILY--  455 (548)
Q Consensus       381 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l--  455 (548)
                      ...|+|++++.|.+.                                .+.|.|+|++|++|+..   +.+||||++++  
T Consensus        18 ~~~G~l~~~l~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~   65 (143)
T 3f04_A           18 EKLGKLQYSLDYDFQ--------------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP   65 (143)
T ss_dssp             CCCCEEEEEEEEETT--------------------------------TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEES
T ss_pred             cCeEEEEEEEEEeCC--------------------------------CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEEC
Confidence            467999999999863                                58999999999999873   57999999999  


Q ss_pred             -cCeEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950          456 -KGDKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN  533 (548)
Q Consensus       456 -~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~  533 (548)
                       +.+.++|++++++.||+|||+|.|.+.... ....|.|+|||++.   ++.|++||++.++|.++..+....+||+|..
T Consensus        66 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~---~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           66 DKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR---FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS---SSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC---CCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence             445789999999999999999999986431 23589999999985   6789999999999999988777789999974

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.72  E-value=2.1e-17  Score=150.79  Aligned_cols=108  Identities=26%  Similarity=0.361  Sum_probs=94.2

Q ss_pred             CceEEEEEEEEecCccccCC-CCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEE-Ec
Q 008950          262 PVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW  337 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~-~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d~  337 (548)
                      ..|.|.|+|++|++|+.+|. .|.+||||++++.+..  ...++|+++++|+||+|||+|.|.+.. ....|.|+|| |+
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~  106 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY  106 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence            46899999999999999985 6999999999997542  235799999999999999999999854 5689999999 99


Q ss_pred             CCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 008950          338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK  370 (548)
Q Consensus       338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~  370 (548)
                      |.+++|++||++.+++.++..+.....|++|..
T Consensus       107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~  139 (171)
T 2q3x_A          107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP  139 (171)
T ss_dssp             STTCSSEEEEEEEECGGGSCTTSCEEEEEECBC
T ss_pred             CCCCCCCEEEEEEEEHHHcccCCCcceeEECCC
Confidence            999999999999999999998878888998854

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.71  E-value=6.5e-17  Score=148.28  Aligned_cols=116  Identities=20%  Similarity=0.358  Sum_probs=95.2

Q ss_pred             CceEEEEEEeeeecCCC---CCCCCcEEEEEEcC------eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEc
Q 008950          427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK  497 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~  497 (548)
                      ..|.|+|+|++|++|+.   .+.+||||++++++      ..++|++++++.||.|||.|.|.+...  ...|.|+|||+
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~L~~~V~d~   83 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ--RHRILFEVFDE   83 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT--TCEEEEEEEEC
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC--CCEEEEEEEEC
Confidence            47999999999999986   35799999999976      567999999999999999999999853  46899999999


Q ss_pred             cCCccCCCCcceEEEEEechhhhcccee-c-----eEEEeCCC-----CCeEEEEEEEEEe
Q 008950          498 RTGIRFWSKESLGHVEINLTDVVHNGRI-N-----EKYHLINS-----KRGVIHVDIRWKM  547 (548)
Q Consensus       498 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~-~-----~w~~L~~~-----~~G~i~l~~~~~~  547 (548)
                      +.   ++.|++||++.++|.++...... .     +||+|...     ..|.|+|++.|.|
T Consensus        84 d~---~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p  141 (176)
T 3m7f_B           84 NR---LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  141 (176)
T ss_dssp             C-------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CC---CCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEe
Confidence            85   67899999999999999876432 2     79999753     2799999999987

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.71  E-value=2e-17  Score=145.80  Aligned_cols=111  Identities=23%  Similarity=0.339  Sum_probs=93.2

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEec---CCCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~  333 (548)
                      +....+.|.|+|++|++|+.+|..|.+||||++++.+..  ...++|++++++.||+|||+|.|.+..   .....|.|+
T Consensus        16 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~   95 (141)
T 1v27_A           16 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT   95 (141)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEE
T ss_pred             EeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEE
Confidence            344569999999999999999999999999999995422  335799999999999999999999532   235799999


Q ss_pred             EEEcCCCCC--CCeeEEEEEECcccCCCCceEEEEeccc
Q 008950          334 VFDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDLLK  370 (548)
Q Consensus       334 v~d~d~~~~--dd~lG~~~i~l~~l~~~~~~~~~l~l~~  370 (548)
                      |||++..++  |++||++.+++.++.... ...|++|..
T Consensus        96 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~  133 (141)
T 1v27_A           96 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT  133 (141)
T ss_dssp             EEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred             EEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence            999999887  999999999999987654 677888754

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.71  E-value=1.4e-17  Score=148.98  Aligned_cols=118  Identities=17%  Similarity=0.268  Sum_probs=98.7

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK  456 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~  456 (548)
                      ....|+|++++.|.+.                                .+.|.|+|++|+||+.   .+.+||||++++.
T Consensus        26 ~~~~G~l~~sl~y~~~--------------------------------~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~   73 (155)
T 2z0u_A           26 AVGATRIQIALKYDEK--------------------------------NKQFAILIIQLSNLSALLQQQDQKVNIRVAVL   73 (155)
T ss_dssp             --CCEEEEEEEEEETT--------------------------------TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEE
T ss_pred             cCCcEEEEEEEEEcCC--------------------------------CCEEEEEEEEccCcCCcccCCCCCEEEEEEEe
Confidence            3567999999999863                                5799999999999986   3679999999996


Q ss_pred             C---e---EEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhc-cceeceE
Q 008950          457 G---D---KKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVH-NGRINEK  528 (548)
Q Consensus       457 ~---~---~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~-~~~~~~w  528 (548)
                      +   .   ++||+++++|.||+|||+|.|.+.... ....|.|+|||++.   ++.+++||++.++|.++.. .....+|
T Consensus        74 ~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~---~~~~d~iG~~~i~l~~l~~~~~~~~~W  150 (155)
T 2z0u_A           74 PCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDR---SHLEECLGGAQISLAEVCRSGERSTRW  150 (155)
T ss_dssp             SCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECT---TSCEEEEEEEEEECTTSCTTCCCEEEE
T ss_pred             cCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCC---CCCCcEEEEEEEEHHHccCCCCccccc
Confidence            5   2   689999999999999999999986421 13579999999985   6789999999999999953 4566899


Q ss_pred             EEeC
Q 008950          529 YHLI  532 (548)
Q Consensus       529 ~~L~  532 (548)
                      |+|.
T Consensus       151 ~~L~  154 (155)
T 2z0u_A          151 YNLL  154 (155)
T ss_dssp             EEEB
T ss_pred             eEcc
Confidence            9986

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.71  E-value=7.8e-17  Score=140.76  Aligned_cols=107  Identities=24%  Similarity=0.384  Sum_probs=88.8

Q ss_pred             ceEEEEEEeeeecCCC--CCCCCcEEEEEE-----cCeEEEeeeccCCCCCccCceEEEE-ccCCC-CCCeEEEEEEEcc
Q 008950          428 AGLLSVLVQGAEDVEG--ENHNNPYAIILY-----KGDKKRTKMIRKTRDPAWNEEFQFM-LDEPP-LHEKIHIEVMSKR  498 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~--~~~~dpyv~v~l-----~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~  498 (548)
                      .+.|.|+|++|+||+.  .+.+||||++++     ...+++|++++++.||+|||+|.|. +.... ....|.|+|||++
T Consensus        19 ~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d   98 (134)
T 2b3r_A           19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE   98 (134)
T ss_dssp             TTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECC
Confidence            5789999999999986  357999999999     3456799999999999999999999 65321 2358999999998


Q ss_pred             CCccCCCCcceEEEEEechhhhccceeceEEEeCCCCCe
Q 008950          499 TGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRG  537 (548)
Q Consensus       499 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G  537 (548)
                      .   ++.+++||++.++|+++..+....+||+|.+.+.|
T Consensus        99 ~---~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~g  134 (134)
T 2b3r_A           99 S---LRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL  134 (134)
T ss_dssp             S---SSCCEEEEEEEEEGGGSCTTSCEEEEEECBC----
T ss_pred             C---CCCCcEEEEEEEEhhhccCCCCcceeEECCCccCC
Confidence            5   67889999999999999887777899999876543

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.71  E-value=4.6e-17  Score=145.69  Aligned_cols=111  Identities=26%  Similarity=0.362  Sum_probs=93.4

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecC-CCCEEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVF  335 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~v~  335 (548)
                      +....|.|.|+|++|++|+..| .|.+||||++++.+.  ....++|+++++|.||+|||+|.|.+... ....|.|+||
T Consensus        22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~  100 (153)
T 3fbk_A           22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVW  100 (153)
T ss_dssp             EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEE
Confidence            4556799999999999999998 699999999999543  23457999999999999999999998422 2356999999


Q ss_pred             EcCCCCC-CCeeEEEEEECcccCC-CCceEEEEeccc
Q 008950          336 DWDKVGG-HDRLGMQLVPLKLLTP-HETKEFTLDLLK  370 (548)
Q Consensus       336 d~d~~~~-dd~lG~~~i~l~~l~~-~~~~~~~l~l~~  370 (548)
                      |++.+++ |++||++.+++.++.. +.....|++|..
T Consensus       101 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~  137 (153)
T 3fbk_A          101 NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG  137 (153)
T ss_dssp             ECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred             eCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence            9998876 8999999999999984 667778888854

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.70  E-value=1.4e-17  Score=146.25  Aligned_cols=126  Identities=22%  Similarity=0.419  Sum_probs=102.4

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG--  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~--  457 (548)
                      +|+|.+++.|.+.                                .+.|.|+|++|++|+..   +.+||||++++.+  
T Consensus         2 ~G~l~~sl~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~   49 (138)
T 3n5a_A            2 RGELLLSLCYNPS--------------------------------ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKD   49 (138)
T ss_dssp             CCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETT
T ss_pred             CcEEEEEEEEcCC--------------------------------CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCC
Confidence            6999999999863                                58999999999999873   5789999999964  


Q ss_pred             ---eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950          458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN  533 (548)
Q Consensus       458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~  533 (548)
                         .+++|++++++.||+|||+|.|.+..... ...|.++|||++.   ++.|++||++.++|.++..  ...+|++|.+
T Consensus        50 ~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~---~~~~~~lG~~~i~l~~~~~--~~~~W~~l~~  124 (138)
T 3n5a_A           50 KRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK---LSRNDVIGKIYLSWKSGPG--EVKHWKDMIA  124 (138)
T ss_dssp             EEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCS---SSCCEEEEEEEESSSSCHH--HHHHHHHHHH
T ss_pred             CccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCC---CCCCcEEEEEEEccccCCh--HHHHHHHHHh
Confidence               35699999999999999999999876422 2479999999985   6789999999999987533  3357888877


Q ss_pred             CCCeEEEEEEEEEeC
Q 008950          534 SKRGVIHVDIRWKMI  548 (548)
Q Consensus       534 ~~~G~i~l~~~~~~~  548 (548)
                      .++..+.   +|+++
T Consensus       125 ~~~~~~~---~Wh~L  136 (138)
T 3n5a_A          125 RPRQPVA---QWHQL  136 (138)
T ss_dssp             STTCCEE---EEEEC
T ss_pred             CCCCeEE---EEeec
Confidence            6665555   67664

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.70  E-value=1.1e-16  Score=144.18  Aligned_cols=98  Identities=38%  Similarity=0.544  Sum_probs=85.4

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v  334 (548)
                      +....|.|.|+|++|+||+..|..|.+||||++++.+.  ....++|+++++++||+|||+|.|.+...  ....|.|+|
T Consensus        20 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V   99 (159)
T 1tjx_A           20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV   99 (159)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence            44567999999999999999999999999999999743  23457999999999999999999998643  246899999


Q ss_pred             EEcCCCCCCCeeEEEEEECccc
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLL  356 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l  356 (548)
                      ||+|.+++|++||++.+++..+
T Consensus       100 ~d~d~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A          100 LDYDKIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             EECCSSSCCEEEEEEEEETTCC
T ss_pred             EECCCCCCCceEEEEEECCCCC
Confidence            9999999999999999999864

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.69  E-value=7.8e-17  Score=141.45  Aligned_cols=99  Identities=32%  Similarity=0.460  Sum_probs=86.0

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecCC--CCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v  334 (548)
                      +....|.|.|+|++|++|+..|..|.+||||++++.+.  ....++|++++++.||.|||+|.|.+....  ...|.|+|
T Consensus        11 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V   90 (138)
T 3n5a_A           11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV   90 (138)
T ss_dssp             EETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred             EcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence            34567999999999999999999999999999999753  233578999999999999999999986432  36899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccC
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLT  357 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~  357 (548)
                      ||+|..++|++||++.+++.++.
T Consensus        91 ~d~~~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           91 MDKDKLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             EECCSSSCCEEEEEEEESSSSCH
T ss_pred             EECCCCCCCcEEEEEEEccccCC
Confidence            99999999999999999999754

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=4.3e-17  Score=143.93  Aligned_cols=121  Identities=19%  Similarity=0.347  Sum_probs=100.1

Q ss_pred             CCccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEE
Q 008950          379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILY  455 (548)
Q Consensus       379 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l  455 (548)
                      .....|+|++++.|.+.                                .+.|.|+|++|+||+.   .+ +||||++++
T Consensus         6 ~~~~~G~l~~~l~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l   52 (142)
T 2dmg_A            6 SGSPLGQIQLTIRHSSQ--------------------------------RNKLIVVVHACRNLIAFSEDG-SDPYVRMYL   52 (142)
T ss_dssp             CSCSSCEEEEEEEEETT--------------------------------TTEEEEEEEEEECCCCSSTTC-CCEEEEEEE
T ss_pred             CCCCcceEEEEEEEeCC--------------------------------CCEEEEEEEEeECCCCCCCCC-CCeeEEEEE
Confidence            34678999999999863                                5789999999999986   35 999999999


Q ss_pred             cC-----eEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCC--CCcceEEEEEechhhhccceece
Q 008950          456 KG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFW--SKESLGHVEINLTDVVHNGRINE  527 (548)
Q Consensus       456 ~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~--~d~~lG~~~i~L~~l~~~~~~~~  527 (548)
                      ..     .+++|++++++.||+|||+|.|.+.... ....|.|+|||++.   ++  .|++||++.++|.++.......+
T Consensus        53 ~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~---~~~~~~~~iG~~~i~l~~~~~~~~~~~  129 (142)
T 2dmg_A           53 LPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG---FLSKDKGLLGKVLVALASEELAKGWTQ  129 (142)
T ss_dssp             ESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC---SSCCSCCCCEEEEEECCCSTTTTCBCC
T ss_pred             EcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC---ccccCCcEEEEEEEecccccccccccc
Confidence            43     5679999999999999999999985421 12489999999985   43  35799999999999877667789


Q ss_pred             EEEeCCCC
Q 008950          528 KYHLINSK  535 (548)
Q Consensus       528 w~~L~~~~  535 (548)
                      ||+|.+.+
T Consensus       130 W~~L~~~~  137 (142)
T 2dmg_A          130 WYDLTEDS  137 (142)
T ss_dssp             BCCCBCSC
T ss_pred             eeeccCCC
Confidence            99998753

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.69  E-value=2.1e-17  Score=145.95  Aligned_cols=120  Identities=22%  Similarity=0.402  Sum_probs=99.8

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK  456 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~  456 (548)
                      ....|+|++++.|.                                  .|.|.|+|++|++|+..   +.+||||++++.
T Consensus         3 ~~~~G~i~~~l~y~----------------------------------~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~   48 (142)
T 1rh8_A            3 HPITGEIQLQINYD----------------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLL   48 (142)
T ss_dssp             CCCCCEEEEEEEEE----------------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEET
T ss_pred             CCcceEEEEEEEEc----------------------------------CCEEEEEEEEecCCCCCCCCCCCCceEEEEEe
Confidence            34689999999887                                  26899999999999873   578999999997


Q ss_pred             Ce--------------EEEeeeccCCCCCccCceEEEE-ccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhh
Q 008950          457 GD--------------KKRTKMIRKTRDPAWNEEFQFM-LDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVV  520 (548)
Q Consensus       457 ~~--------------~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~  520 (548)
                      +.              .++|++++++.||+|||+|.|. +.... ....|.|+|||++.   ++.|++||++.++|.++.
T Consensus        49 ~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~---~~~~~~lG~~~i~l~~l~  125 (142)
T 1rh8_A           49 PGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR---FSSNDFLGEVLIDLSSTS  125 (142)
T ss_dssp             TSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECS---SSCEEEEEEEEEETTSCG
T ss_pred             cCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCC---CCCCceEEEEEEeccccc
Confidence            63              3689999999999999999997 43211 24589999999985   678899999999999998


Q ss_pred             ccceeceEEEeCCCCC
Q 008950          521 HNGRINEKYHLINSKR  536 (548)
Q Consensus       521 ~~~~~~~w~~L~~~~~  536 (548)
                      ......+||+|.+...
T Consensus       126 ~~~~~~~W~~L~~~~~  141 (142)
T 1rh8_A          126 HLDNTPRWYPLKEQTE  141 (142)
T ss_dssp             GGTTCCEEEECBCCCC
T ss_pred             cCCCCCeEEECCccCC
Confidence            7666789999987643

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.69  E-value=3.1e-16  Score=137.73  Aligned_cols=121  Identities=21%  Similarity=0.337  Sum_probs=99.9

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC----CCCCcEEEEEE
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILY  455 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l  455 (548)
                      ....|+|.+++.|.+.                                .+.|.|+|++|+||+..    +.+||||++++
T Consensus         5 ~~~~G~l~~~l~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~   52 (138)
T 1ugk_A            5 SSGLGTLFFSLEYNFE--------------------------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTI   52 (138)
T ss_dssp             CCCCCEEEEEEEEEGG--------------------------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEE
T ss_pred             CCccEEEEEEEEEECC--------------------------------CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEE
Confidence            4568999999999864                                57899999999999863    56899999999


Q ss_pred             cC---eEEEeeeccCCCCCccCceEEEE-ccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccc-eeceEE
Q 008950          456 KG---DKKRTKMIRKTRDPAWNEEFQFM-LDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNG-RINEKY  529 (548)
Q Consensus       456 ~~---~~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~w~  529 (548)
                      .+   ..++|++++++.||+|||+|.|. +.... ....|.|+|||++.   ++.|++||++.++|.++..+. ....|+
T Consensus        53 ~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~---~~~~~~lG~~~i~l~~l~~~~~~~~~~~  129 (138)
T 1ugk_A           53 LPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR---FSRDDIIGEVLIPLSGIELSEGKMLMNR  129 (138)
T ss_dssp             ETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS---SCCCCCCEEEEEECTTCCCTTCCEEEEE
T ss_pred             ecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCC---CCCCcEEEEEEEehhHccCCCCcchhhh
Confidence            63   67899999999999999999995 55422 23589999999985   678999999999999997754 345678


Q ss_pred             EeCCCC
Q 008950          530 HLINSK  535 (548)
Q Consensus       530 ~L~~~~  535 (548)
                      +|...+
T Consensus       130 ~l~~~~  135 (138)
T 1ugk_A          130 EIISGP  135 (138)
T ss_dssp             ECBSSS
T ss_pred             hhhcCC
Confidence            887653

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.69  E-value=2.4e-16  Score=142.01  Aligned_cols=121  Identities=24%  Similarity=0.402  Sum_probs=99.1

Q ss_pred             CCccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEE
Q 008950          379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILY  455 (548)
Q Consensus       379 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l  455 (548)
                      .....|+|++++.|.+.                                .+.|.|+|++|+||+..   +.+||||++++
T Consensus         7 ~~~~~G~l~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l   54 (159)
T 1tjx_A            7 ILEKLGDICFSLRYVPT--------------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHL   54 (159)
T ss_dssp             GGGCCCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEE
T ss_pred             CcCcCCeEEEEEEEcCC--------------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEE
Confidence            34578999999999974                                57999999999999863   57899999999


Q ss_pred             cC-----eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechh----------h
Q 008950          456 KG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTD----------V  519 (548)
Q Consensus       456 ~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~----------l  519 (548)
                      .+     ..++|++++++.||+|||+|.|.+..... ...|.|+|||++.   ++.|++||++.+++..          +
T Consensus        55 ~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~---~~~~~~iG~~~i~l~~~~~~~~~w~~l  131 (159)
T 1tjx_A           55 MQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK---IGKNDAIGKVFVGYNSTGAELRHWSDM  131 (159)
T ss_dssp             EETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS---SSCCEEEEEEEEETTCCHHHHHHHHHH
T ss_pred             EeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCC---CCCCceEEEEEECCCCCCcHHHHHHHH
Confidence            63     35699999999999999999999865322 3479999999985   6789999999999984          3


Q ss_pred             hcc--ceeceEEEeCCC
Q 008950          520 VHN--GRINEKYHLINS  534 (548)
Q Consensus       520 ~~~--~~~~~w~~L~~~  534 (548)
                      +..  ....+||+|...
T Consensus       132 ~~~~~~~~~~W~~L~~~  148 (159)
T 1tjx_A          132 LANPRRPIAQWHTLQVE  148 (159)
T ss_dssp             HHSTTCCEEEEEECBCH
T ss_pred             HHCCCCeeeeEEECcCc
Confidence            332  356789998764

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.69  E-value=2.9e-16  Score=136.72  Aligned_cols=113  Identities=20%  Similarity=0.364  Sum_probs=94.6

Q ss_pred             ceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCcc
Q 008950          428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIR  502 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~  502 (548)
                      ...|+|+|++|++|+..   +.+||||++++++  +.++|++++++.||+|||+|.|.+...   +.|.++|||++.   
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~---   77 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKK---   77 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGG---
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCC---
Confidence            46799999999999763   5799999999975  678999999999999999999999774   359999999985   


Q ss_pred             CCC---CcceEEEEEechhhhc-cceeceEEEeCCC-------CCeEEEEEEEEE
Q 008950          503 FWS---KESLGHVEINLTDVVH-NGRINEKYHLINS-------KRGVIHVDIRWK  546 (548)
Q Consensus       503 ~~~---d~~lG~~~i~L~~l~~-~~~~~~w~~L~~~-------~~G~i~l~~~~~  546 (548)
                      ++.   |++||++.++++++.. .....+|++|...       ..|+|++++++|
T Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~r  132 (132)
T 3pyc_A           78 IHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQTR  132 (132)
T ss_dssp             TTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred             CCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence            443   8999999999999843 3344689999754       279999999875

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.69  E-value=1.4e-16  Score=138.34  Aligned_cols=89  Identities=19%  Similarity=0.295  Sum_probs=74.3

Q ss_pred             CCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeee-cCCCCCeeeceEEEEEecCCCCEEEEEEEEcCC
Q 008950          261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK-KKNLNPEWNENFKLVVKEPESQILQLQVFDWDK  339 (548)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~-~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~  339 (548)
                      +++|.|.|+|++|+++..   .|.+||||+++ . +.   .+|+++ .++.||+|||+|.|.+.+. ...|.|+|||+| 
T Consensus         2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-   71 (131)
T 2cjt_A            2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QN---VKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-   71 (131)
T ss_dssp             CCCEEEEEEEEEEECSSC---GGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-
T ss_pred             CcceEEEEEEEEeECCCC---CCCcCeEEEEE-e-cC---EEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-
Confidence            457999999999998853   57899999999 2 22   245544 4799999999999999764 467999999999 


Q ss_pred             CCCCCeeEEEEEECcccCCC
Q 008950          340 VGGHDRLGMQLVPLKLLTPH  359 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~  359 (548)
                      .++|++||++.++|+++...
T Consensus        72 ~~~dd~iG~~~i~l~~l~~~   91 (131)
T 2cjt_A           72 LIWDTMVGTVWIPLRTIRQS   91 (131)
T ss_dssp             SSCEEEEEEEEEEGGGSCBC
T ss_pred             CCCCCeEEEEEEEHHHhhhc
Confidence            88999999999999998644

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.69  E-value=2.4e-16  Score=143.09  Aligned_cols=99  Identities=33%  Similarity=0.441  Sum_probs=86.7

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v  334 (548)
                      +....+.|.|+|++|++|+..|..|.+||||++++.+..  ...++|+++++|+||+|||+|.|.+...  ....|.|+|
T Consensus        32 y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V  111 (166)
T 2cm5_A           32 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV  111 (166)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEE
Confidence            455679999999999999999999999999999998632  3457999999999999999999998643  256899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccC
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLT  357 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~  357 (548)
                      ||++.+++|++||++.+++.++.
T Consensus       112 ~d~d~~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          112 WDYDIGKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             EECCSSSCCEEEEEEEEETTCCH
T ss_pred             EECCCCCCCcEEEeEEEecccCC
Confidence            99999999999999999999863

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.68  E-value=1.3e-16  Score=140.79  Aligned_cols=119  Identities=25%  Similarity=0.387  Sum_probs=98.5

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK  456 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~  456 (548)
                      ....|+|.+++.|.+.                                .+.|.|+|++|++|+..   +.+||||++++.
T Consensus        12 ~~~~G~l~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~   59 (142)
T 2chd_A           12 ATTLGALEFSLLYDQD--------------------------------NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLL   59 (142)
T ss_dssp             --CCCEEEEEEEEEGG--------------------------------GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEE
T ss_pred             CCccceEEEEEEEeCC--------------------------------CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEE
Confidence            4578999999999863                                58999999999999873   578999999997


Q ss_pred             C-----eEEEeeeccCCCCCccCceEEEE-ccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEE
Q 008950          457 G-----DKKRTKMIRKTRDPAWNEEFQFM-LDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKY  529 (548)
Q Consensus       457 ~-----~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~  529 (548)
                      +     ..++|++++++.||+|||+|.|. +..... ...|.|+|||++.   ++.|++||++.++|.++..+....-|+
T Consensus        60 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~---~~~d~~iG~~~i~l~~l~~~~~~~~~~  136 (142)
T 2chd_A           60 PGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK---FGHNEFIGETRFSLKKLKANQRKNFNI  136 (142)
T ss_dssp             SCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECT---TSCEEEEEEEEEEGGGCCTTCCEEEEE
T ss_pred             cCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCC---CCCCcEEEEEEEEHHHcCCCCccEEEE
Confidence            5     67899999999999999999998 432111 2589999999985   677899999999999998777666677


Q ss_pred             EeCC
Q 008950          530 HLIN  533 (548)
Q Consensus       530 ~L~~  533 (548)
                      +|..
T Consensus       137 ~L~~  140 (142)
T 2chd_A          137 CLER  140 (142)
T ss_dssp             ECBC
T ss_pred             eccc
Confidence            7764

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.68  E-value=1e-16  Score=143.41  Aligned_cols=97  Identities=29%  Similarity=0.374  Sum_probs=79.4

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecCC--CCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v  334 (548)
                      +....+.|.|+|++|++|+..|..|.+||||++++.+.  ....++|+++++++||+|||+|.|.+....  ...|.|+|
T Consensus        25 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V  104 (153)
T 1w15_A           25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV  104 (153)
T ss_dssp             EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred             EcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEE
Confidence            44567999999999999999998999999999999543  333579999999999999999999987542  46899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcc
Q 008950          335 FDWDKVGGHDRLGMQLVPLKL  355 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~  355 (548)
                      ||+|.+++|++||++.+++++
T Consensus       105 ~d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          105 LDSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             EECCTTSCCEEEEEEEESTTC
T ss_pred             EeCCCCCCCcEEEEEEECCCC
Confidence            999999999999999999988

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.67  E-value=3.7e-16  Score=142.36  Aligned_cols=116  Identities=19%  Similarity=0.302  Sum_probs=98.8

Q ss_pred             CceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccC
Q 008950          427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRF  503 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~  503 (548)
                      ..+.|.|+|++|++|+.   .+.+||||+++++++.++|++++++.||+|||+|.|.+..   .+.|.|+|||++.   +
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~---~~~L~~~V~D~d~---~  107 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQT---L  107 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCS---S
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC---CCEEEEEEEECCC---C
Confidence            56889999999999983   2359999999999988999999999999999999999853   5689999999985   6


Q ss_pred             CCCcceEEEEEechhhhccc--e---eceEEEeCCC-----CCeEEEEEEEEEeC
Q 008950          504 WSKESLGHVEINLTDVVHNG--R---INEKYHLINS-----KRGVIHVDIRWKMI  548 (548)
Q Consensus       504 ~~d~~lG~~~i~L~~l~~~~--~---~~~w~~L~~~-----~~G~i~l~~~~~~~  548 (548)
                      +.|++||++.++|.++....  .   ...|++|...     ..|+|.+.+.+.++
T Consensus       108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            78999999999999997632  1   2569999764     37999999988764

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=6.2e-16  Score=153.01  Aligned_cols=132  Identities=23%  Similarity=0.310  Sum_probs=112.8

Q ss_pred             ccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC
Q 008950          381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG  457 (548)
Q Consensus       381 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~  457 (548)
                      ...|+|++++.|.+.                                .+.|.|+|++|++|+..   +.+||||++++++
T Consensus         3 ~~~G~l~~~l~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~   50 (284)
T 2r83_A            3 EKLGKLQYSLDYDFQ--------------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP   50 (284)
T ss_dssp             CCCCEEEEEEEEETT--------------------------------TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEET
T ss_pred             cceeEEEEEEEEECC--------------------------------CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEc
Confidence            457999999999863                                58999999999999863   5799999999964


Q ss_pred             ---eEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950          458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN  533 (548)
Q Consensus       458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~  533 (548)
                         +.++|++++++.||+|||+|.|.+.... ....|.|+|||++.   ++.|++||++.++|.++..+....+||+|.+
T Consensus        51 ~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~---~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~  127 (284)
T 2r83_A           51 DKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR---FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  127 (284)
T ss_dssp             CTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS---SSCCCEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC---CCCCceeEEEEEcchhcccCCcceeEEEeec
Confidence               4679999999999999999999986532 23689999999984   6789999999999999988777889999975


Q ss_pred             C------CCeEEEEEEEEEe
Q 008950          534 S------KRGVIHVDIRWKM  547 (548)
Q Consensus       534 ~------~~G~i~l~~~~~~  547 (548)
                      .      ..|+|.+++++.|
T Consensus       128 ~~~~~~~~~G~i~l~l~~~p  147 (284)
T 2r83_A          128 AEKEEQEKLGDICFSLRYVP  147 (284)
T ss_dssp             CSSCCCCCCCEEEEEEEEET
T ss_pred             cccccccccccEEEEEEecC
Confidence            3      3699999998864

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.67  E-value=2.8e-16  Score=143.22  Aligned_cols=116  Identities=22%  Similarity=0.274  Sum_probs=98.2

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC----CCCCCcEEEEEE
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILY  455 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~----~~~~dpyv~v~l  455 (548)
                      ....|+|++.+.|.                                  .+.|.|+|++|+||+.    .+.+||||++++
T Consensus        15 ~~~~G~l~~~l~y~----------------------------------~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l   60 (171)
T 2q3x_A           15 TPAMGDIQIGMEDK----------------------------------KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYL   60 (171)
T ss_dssp             --CCCEEEEEEEEE----------------------------------TTEEEEEEEEEESCCCCC---CCCEEEEEEEE
T ss_pred             CCCccEEEEEEEEC----------------------------------CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEE
Confidence            34679999999982                                  4789999999999985    357899999998


Q ss_pred             cC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEE-EccCCccCCCCcceEEEEEechhhhccceeceEE
Q 008950          456 KG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVM-SKRTGIRFWSKESLGHVEINLTDVVHNGRINEKY  529 (548)
Q Consensus       456 ~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~-d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~  529 (548)
                      .+     ..++|++++++.||+|||+|.|.+..  ....|.|+|| |++.   ++.|++||++.++|.++..+....+||
T Consensus        61 ~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~L~~~V~~d~d~---~~~d~~iG~~~i~l~~l~~~~~~~~W~  135 (171)
T 2q3x_A           61 LENGACIAKKKTRIARKTLDPLYQQSLVFDESP--QGKVLQVIVWGDYGR---MDHKCFMGVAQILLEELDLSSMVIGWY  135 (171)
T ss_dssp             EETTEEEEEEECCCCCSCSSCEEEEEEECSSCC--TTEEEEEEEEEECST---TCSSEEEEEEEECGGGSCTTSCEEEEE
T ss_pred             ECCCccccceeCccCCCCCCCCCCcEEEEEecC--CCCEEEEEEEEcCCC---CCCCCEEEEEEEEHHHcccCCCcceeE
Confidence            64     26799999999999999999999864  3578999999 8874   678899999999999998777778999


Q ss_pred             EeCCC
Q 008950          530 HLINS  534 (548)
Q Consensus       530 ~L~~~  534 (548)
                      +|.+.
T Consensus       136 ~L~~~  140 (171)
T 2q3x_A          136 KLFPP  140 (171)
T ss_dssp             ECBCG
T ss_pred             ECCCc
Confidence            99765

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.66  E-value=5.2e-16  Score=132.79  Aligned_cols=118  Identities=19%  Similarity=0.322  Sum_probs=100.5

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeec-CCCCCeeeceEEEEEecC--CCCEEEEEEEEcCCC
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV  340 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~  340 (548)
                      -.|+|+|.+|.+|+     |++|||+++.+.+.+   ++|++++ ++.||+|||.|.+++..+  .+..|.|.|||++++
T Consensus        21 msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k---~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v   92 (144)
T 3l9b_A           21 MALIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV   92 (144)
T ss_dssp             EEEEEEEEEEESCC-----SCEEEEEEEEETTEE---EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred             EEEEEEEEEecCCC-----CCCCCeEEEEEeccc---eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence            46999999999998     578999999997654   6999998 699999999999999754  367999999999999


Q ss_pred             CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950          341 GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF  395 (548)
Q Consensus       341 ~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  395 (548)
                      ++|++||++.++|+++...+....+..|...      ++....++|.++++|.|.
T Consensus        93 ~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~------n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           93 FSNKLIGTFRMVLQKVVEENRVEVSDTLIDD------NNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             SCCEEEEEEEEESHHHHHHSEEEEEEEEECT------TSCEEEEEEEEEEEEEET
T ss_pred             cCCCEEEEEEEEhHHhccCCeEEEeecccCC------CCCccccEEEEEEEecCC
Confidence            9999999999999999988766666666432      234456899999999995

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.64  E-value=6.1e-16  Score=166.03  Aligned_cols=122  Identities=26%  Similarity=0.407  Sum_probs=103.4

Q ss_pred             cCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCC
Q 008950          260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK  339 (548)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~  339 (548)
                      ....|.|.|+|++|++|+++|..|.+||||++++++..   ++|+++++|+||.|||+|.|.+..+....|.|+|||+|.
T Consensus       383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~---~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~  459 (510)
T 3jzy_A          383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQS---YTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ  459 (510)
T ss_dssp             ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS
T ss_pred             CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCee---ccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC
Confidence            34678999999999999999999999999999998654   699999999999999999999987777889999999999


Q ss_pred             CCCCCeeEEEEEECcccCCCCc----eEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          340 VGGHDRLGMQLVPLKLLTPHET----KEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~~~----~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      .++|++||++.+++.++..+..    ...|+++.          +...|+|++++.+.-
T Consensus       460 ~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~----------~~~~G~i~l~~~l~l  508 (510)
T 3jzy_A          460 FSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH----------EVPTGEVWVRFDLQL  508 (510)
T ss_dssp             SSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB----------SSSSCEEEEEEEEEE
T ss_pred             CCCCCceEEEEEEHHHhccccCCCCceeeeecCC----------CCCCceEEEEEEEEE
Confidence            9999999999999999986533    45666652          346799998887653

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.60  E-value=9e-15  Score=125.13  Aligned_cols=113  Identities=16%  Similarity=0.375  Sum_probs=100.2

Q ss_pred             EEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeecc-CCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCc
Q 008950          430 LLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKE  507 (548)
Q Consensus       430 ~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~  507 (548)
                      .|+|+|.+|.+|++  .+|||+++.+.+.++||++++ .+.||+|||.|+|++..+.. .+.|.|.|+|.+.   +.++.
T Consensus        22 sL~V~l~~a~~Lpg--~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~---v~~nr   96 (144)
T 3l9b_A           22 ALIVHLKTVSELRG--RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK---VFSNK   96 (144)
T ss_dssp             EEEEEEEEEESCCS--CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT---TSCCE
T ss_pred             EEEEEEEEecCCCC--CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc---ccCCC
Confidence            48999999999996  689999999999999999998 69999999999999987533 3589999999985   78999


Q ss_pred             ceEEEEEechhhhccceeceEEEeCCCC----CeEEEEEEEEEe
Q 008950          508 SLGHVEINLTDVVHNGRINEKYHLINSK----RGVIHVDIRWKM  547 (548)
Q Consensus       508 ~lG~~~i~L~~l~~~~~~~~w~~L~~~~----~G~i~l~~~~~~  547 (548)
                      +||++.++|+++...+...-+-+|.+..    .+.|.+++.+.|
T Consensus        97 lIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~p  140 (144)
T 3l9b_A           97 LIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA  140 (144)
T ss_dssp             EEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecC
Confidence            9999999999999988777777887764    589999999987

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.59  E-value=4.7e-15  Score=134.04  Aligned_cols=88  Identities=18%  Similarity=0.290  Sum_probs=74.1

Q ss_pred             CceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeec-CCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC
Q 008950          262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDKV  340 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~  340 (548)
                      +.+.|+|+|++|+++.   ..|.+||||+++ . +.   .+|++++ ++.||+|||+|.|.+.+. ...|.|+|||+| .
T Consensus        12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~   81 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V-QN---VESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L   81 (167)
T ss_dssp             CCCEEEEEEEEEECSS---CGGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-S
T ss_pred             ceEEEEEEEEEEECCC---CCCCCCeEEEEE-e-cc---eEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-C
Confidence            4789999999999884   258899999999 2 22   3565554 699999999999999864 468999999999 8


Q ss_pred             CCCCeeEEEEEECcccCCC
Q 008950          341 GGHDRLGMQLVPLKLLTPH  359 (548)
Q Consensus       341 ~~dd~lG~~~i~l~~l~~~  359 (548)
                      ++|++||++.++|+++...
T Consensus        82 ~~dd~iG~~~i~L~~l~~~  100 (167)
T 2cjs_A           82 IWDTMVGTVWIPLRTIRQS  100 (167)
T ss_dssp             SCCEEEEEEEEEGGGSCBC
T ss_pred             CCCceEEEEEEEHHHhccc
Confidence            8999999999999998643

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.58  E-value=9.2e-15  Score=145.43  Aligned_cols=133  Identities=24%  Similarity=0.359  Sum_probs=107.9

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEE-
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILY-  455 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l-  455 (548)
                      .+..|+|++++.|.+.                                .+.|.|+|++|++|+..   +.+||||++++ 
T Consensus         3 ~~~~G~l~~~l~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~   50 (296)
T 1dqv_A            3 GAPCGRISFALRYLYG--------------------------------SDQLVVRILQALDLPAKDSNGFSDPYVKIYLL   50 (296)
T ss_dssp             CCSSCEEEEEEECCSS--------------------------------SCEEEEEEEEEECCCCCSTTSCCCEEEEEECT
T ss_pred             CCeeeEEEEEEEEeCC--------------------------------CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEE
Confidence            4578999999998753                                57899999999999863   57999999999 


Q ss_pred             --cCeEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEe-chhhhc-cceeceEEE
Q 008950          456 --KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEIN-LTDVVH-NGRINEKYH  530 (548)
Q Consensus       456 --~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~-L~~l~~-~~~~~~w~~  530 (548)
                        +.+.++|++++++.||+|||+|.|.+..... ...|.|+|||++.   ++.|++||++.++ +.++.. ......|++
T Consensus        51 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~---~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~  127 (296)
T 1dqv_A           51 PDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR---FSRHDLIGQVVLDNLLELAEQPPDRPLWRD  127 (296)
T ss_dssp             TSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS---SSCCCEEEEEECCCTTGGGSSCSSCCCCEE
T ss_pred             cCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC---CCCCceEEEEEeccccccccCCccceeeec
Confidence              4567899999999999999999999864321 3489999999985   6789999999996 555544 234467999


Q ss_pred             eCCC-----CCeEEEEEEEEEe
Q 008950          531 LINS-----KRGVIHVDIRWKM  547 (548)
Q Consensus       531 L~~~-----~~G~i~l~~~~~~  547 (548)
                      |...     ..|+|.+++.+.|
T Consensus       128 L~~~~~~~~~~G~i~vsl~y~~  149 (296)
T 1dqv_A          128 ILEGGSEKADLGELNFSLCYLP  149 (296)
T ss_dssp             CBCCSSCCSCCCEEEEEEEEET
T ss_pred             cccccccccccceEEEEEEecc
Confidence            9653     3699999988764

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.57  E-value=4.1e-15  Score=162.67  Aligned_cols=108  Identities=28%  Similarity=0.453  Sum_probs=97.9

Q ss_pred             CCceEEEEEEEEecCccc---cCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEc
Q 008950          261 KPVGILHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW  337 (548)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~---~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~  337 (548)
                      .+.|.|+|+|++|++|+.   +|..|.+||||++++++....+++|+++++++||+|||+|.|.+..+..+.|+|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            567999999999999999   88889999999999997544567999999999999999999999876778999999999


Q ss_pred             CCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      |.++ |++||++.+++.++..+..+..|++|.
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~  125 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFN  125 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred             CCCC-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence            9998 999999999999998887777888874

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.56  E-value=3.4e-14  Score=123.22  Aligned_cols=111  Identities=21%  Similarity=0.277  Sum_probs=84.9

Q ss_pred             CceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeecc-CCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC
Q 008950          427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS  505 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~  505 (548)
                      ..+.|.|+|++|++++..+.+||||++.  ++..+|++++ ++.||+|||+|.|.+.+.  ...|.|+|||++    +..
T Consensus         3 ~~~~L~V~V~~A~~l~~~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d----~~~   74 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG----LIW   74 (131)
T ss_dssp             CCEEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC--SSEEEEEEEECC----SSC
T ss_pred             cceEEEEEEEEeECCCCCCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC--CCeEEEEEEECC----CCC
Confidence            3589999999999997667899999999  3344565554 799999999999999864  457999999997    457


Q ss_pred             CcceEEEEEechhhhccc--eeceEEEeCCC--------------CCeEEEEEEEE
Q 008950          506 KESLGHVEINLTDVVHNG--RINEKYHLINS--------------KRGVIHVDIRW  545 (548)
Q Consensus       506 d~~lG~~~i~L~~l~~~~--~~~~w~~L~~~--------------~~G~i~l~~~~  545 (548)
                      |++||++.++|+++....  ...+|.++.-.              ..+.+.+.++|
T Consensus        75 dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           75 DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             EEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             CCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence            999999999999987643  11245544311              14557777776

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.55  E-value=3.4e-14  Score=152.43  Aligned_cols=116  Identities=22%  Similarity=0.427  Sum_probs=102.6

Q ss_pred             CceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccC
Q 008950          427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRF  503 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~  503 (548)
                      ..|.|.|+|.+|++|+.   .+.+||||++++++..++|++++++.||+|||+|.|.+... ..+.|.|+|||++.   +
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d~---~  460 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL-YQDVLCLTLFDRDQ---F  460 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCT-TTCEEEEEEEECCS---S
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC---C
Confidence            56899999999999976   35799999999999999999999999999999999999775 44689999999985   6


Q ss_pred             CCCcceEEEEEechhhhccce----eceEEEeCCCCCeEEEEEEEEE
Q 008950          504 WSKESLGHVEINLTDVVHNGR----INEKYHLINSKRGVIHVDIRWK  546 (548)
Q Consensus       504 ~~d~~lG~~~i~L~~l~~~~~----~~~w~~L~~~~~G~i~l~~~~~  546 (548)
                      +.|++||++.++|.++..+..    ...|++|.+...|+|+++++.+
T Consensus       461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CCCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            789999999999999987543    6789999998999999998765

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.52  E-value=5.4e-14  Score=127.03  Aligned_cols=88  Identities=22%  Similarity=0.338  Sum_probs=74.6

Q ss_pred             ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeecc-CCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950          428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK  506 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d  506 (548)
                      .+.|.|+|++|++++..+.+||||++.  .+..+|++++ ++.||+|||+|.|.+.+.  ...|.|+|||++    +..|
T Consensus        13 ~~~L~V~V~~A~~l~~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d----~~~d   84 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG----LIWD   84 (167)
T ss_dssp             CCEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT--TSEEEEEEEECC----SSCC
T ss_pred             eEEEEEEEEEEECCCCCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC--CCEEEEEEEECC----CCCC
Confidence            579999999999987667899999999  3445677665 699999999999999864  457999999997    4579


Q ss_pred             cceEEEEEechhhhccc
Q 008950          507 ESLGHVEINLTDVVHNG  523 (548)
Q Consensus       507 ~~lG~~~i~L~~l~~~~  523 (548)
                      ++||++.++|+++....
T Consensus        85 d~iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           85 TMVGTVWIPLRTIRQSN  101 (167)
T ss_dssp             EEEEEEEEEGGGSCBCS
T ss_pred             ceEEEEEEEHHHhcccC
Confidence            99999999999987643

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.51  E-value=1.1e-13  Score=150.26  Aligned_cols=123  Identities=22%  Similarity=0.378  Sum_probs=100.0

Q ss_pred             CceEEEEEEEEecCccccCC--CCCCCcEEEEEEcCc--ccceeeeeeecCC-CCCeeeceEEEEEecCCCCEEEEEEEE
Q 008950          262 PVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKN-LNPEWNENFKLVVKEPESQILQLQVFD  336 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~~T~v~~~t-~nP~Wne~f~f~v~~~~~~~L~v~v~d  336 (548)
                      ..+.|+|+|++|++|+..+.  .|.+||||++.+.+.  ...++||++++++ .||+|||+|.|.+..+....|+|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            56899999999999999874  689999999999653  2235799999987 999999999999987666789999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCC-ccccEEEEEEEEE
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDM-KQRGKIVVELTYV  393 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~-~~~G~l~l~l~~~  393 (548)
                      +|..++|++||++.+++..+..+.   .+++|...      .+. -..|.|.+.+.|.
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~------~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSK------NGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECT------TSCEEEEEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCC------CcCCCCceEEEEEEEEE
Confidence            999999999999999999998753   35665321      111 2457888888774

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.48  E-value=3.2e-13  Score=143.42  Aligned_cols=109  Identities=18%  Similarity=0.314  Sum_probs=92.7

Q ss_pred             CceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~--~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      ..|.|.|+|++|++|+.  .+.+||||++++++++++|+++++++||+|||.|.|.+...+..+.|.|+|||+|.   ..
T Consensus       392 ~~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~---~~  468 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY---GW  468 (540)
T ss_dssp             TEEEEEEEEEEEESCCCSSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS---SS
T ss_pred             cccEEEEEEEEccCCCcccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC---CC
Confidence            46899999999999986  35799999999999999999999999999999999986543345789999999985   56


Q ss_pred             CCcceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEE
Q 008950          505 SKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRW  545 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~  545 (548)
                      .|++||++.++|.    .+....|++|.   .|.|+++++.
T Consensus       469 ~dD~LG~~~~~L~----~g~~~~~~~l~---~G~l~~~~~~  502 (540)
T 3nsj_A          469 DDDLLGSCDRSPH----SGFHEVTCELN---HGRVKFSYHA  502 (540)
T ss_dssp             CCEEEEEEEECCC----SEEEEEEEECS---SSEEEEEEEE
T ss_pred             CCCEEEEEEEEee----CCcEEEEEEcC---CeEEEEEEEE
Confidence            7899999999997    24457899875   6888888764

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.41  E-value=2.1e-14  Score=151.96  Aligned_cols=127  Identities=20%  Similarity=0.235  Sum_probs=21.7

Q ss_pred             CceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCC---CCCeeeceEEEEEecCCCCEEEEEEEEc-
Q 008950          262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKN---LNPEWNENFKLVVKEPESQILQLQVFDW-  337 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t---~nP~Wne~f~f~v~~~~~~~L~v~v~d~-  337 (548)
                      ..|.|+|+|++|++|+++|     ||||++++++...  +||+++++|   +||+|||+|.|.+... ...|.++|||. 
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~--~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~   80 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RYYCELCLDDMLY--ARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDS   80 (483)
T ss_dssp             EEECC----------------------------------------------------CCEECC-----------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEE--eeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecC
Confidence            4588999999999999886     9999999987543  589999999   9999999999987543 57899999994 


Q ss_pred             C---CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCC-----------------CCCCCccccEEEEEEEEEecc
Q 008950          338 D---KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS-----------------DPKDMKQRGKIVVELTYVPFK  396 (548)
Q Consensus       338 d---~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~-----------------~~~~~~~~G~l~l~l~~~p~~  396 (548)
                      |   ..++|++||++.++++++..+.....|++|.......                 ..++....|.|++++.|.+..
T Consensus        81 d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~  159 (483)
T 3bxj_A           81 DKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS  159 (483)
T ss_dssp             --------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred             CccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence            4   3678999999999999999887777888874321100                 001123569999999998754

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.36  E-value=1.7e-12  Score=142.10  Aligned_cols=108  Identities=20%  Similarity=0.383  Sum_probs=93.5

Q ss_pred             CceEEEEEEeeeecCCC------CCCCCcEEEEEEcC---eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEc
Q 008950          427 GAGLLSVLVQGAEDVEG------ENHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK  497 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~------~~~~dpyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~  497 (548)
                      ..+.|+|+|++|++|+.      .+.+||||++++++   .+++|++++++.||+|||+|.|.+... ..+.|.|+|||+
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D~   94 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDA   94 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEEC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEEC
Confidence            47999999999999987      36899999999984   578999999999999999999999875 456899999999


Q ss_pred             cCCccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEEE
Q 008950          498 RTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHV  541 (548)
Q Consensus       498 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l  541 (548)
                      +.   ++ |++||++.++|.++..+....+||+|...  +++.+
T Consensus        95 D~---~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l  132 (749)
T 1cjy_A           95 NY---VM-DETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL  132 (749)
T ss_dssp             CS---SS-CEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred             CC---CC-CceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence            85   56 99999999999999877777899999754  44443

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.35  E-value=6.4e-14  Score=148.30  Aligned_cols=117  Identities=11%  Similarity=0.164  Sum_probs=21.0

Q ss_pred             CceEEEEEEeeeecCCCCCCCCcEEEEEEcCe-EEEeeeccCC---CCCccCceEEEEccCCCCCCeEEEEEEEc-cCCc
Q 008950          427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGD-KKRTKMIRKT---RDPAWNEEFQFMLDEPPLHEKIHIEVMSK-RTGI  501 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~-~~kT~v~~~t---~nP~wne~f~f~v~~~~~~~~l~v~V~d~-~~~~  501 (548)
                      ..+.|+|+|++|++|+.++  ||||+++++++ ..||+++++|   .||+|||+|+|.+...  ...|.++|||+ +...
T Consensus         9 ~~~~L~V~VieAk~L~~~d--dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~--~~~L~v~V~d~~d~~~   84 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK--RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA--VRALRLHLYRDSDKKR   84 (483)
T ss_dssp             EEECC-----------------------------------------------CCEECC----------------------
T ss_pred             eccEEEEEEEEcCCcCCCC--CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC--ccEEEEEEEecCCccc
Confidence            4688999999999999864  99999999886 4599999999   9999999999987543  36899999995 3100


Q ss_pred             cCCCCcceEEEEEechhhhccceeceEEEeCCC---------------------------CCeEEEEEEEEEe
Q 008950          502 RFWSKESLGHVEINLTDVVHNGRINEKYHLINS---------------------------KRGVIHVDIRWKM  547 (548)
Q Consensus       502 ~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~---------------------------~~G~i~l~~~~~~  547 (548)
                      ..++|++||++.|+++++..+...++||+|.+.                           ..|.|+|+++|++
T Consensus        85 ~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~  157 (483)
T 3bxj_A           85 KKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQT  157 (483)
T ss_dssp             ----------------------CCEECC--------------------------------------CEEEEEE
T ss_pred             cCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeee
Confidence            156789999999999999877777899999532                           1589999999986

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.33  E-value=8.1e-12  Score=135.62  Aligned_cols=113  Identities=18%  Similarity=0.307  Sum_probs=94.8

Q ss_pred             CceEEEEEEeeeecCCCC-----CCCCcEEEEEEcC-----eEEEeeeccCC-CCCccCceEEEEccCCCCCCeEEEEEE
Q 008950          427 GAGLLSVLVQGAEDVEGE-----NHNNPYAIILYKG-----DKKRTKMIRKT-RDPAWNEEFQFMLDEPPLHEKIHIEVM  495 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~~-----~~~dpyv~v~l~~-----~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~v~V~  495 (548)
                      ..+.|.|+|++|++|+..     +.+||||++.+.+     .++||++++++ .||+|||+|+|.+..+ ....|.|+||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~-el~~L~~~V~  573 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVE  573 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCG-GGCEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecC-CCCEEEEEEE
Confidence            578999999999999863     4799999999955     56799999997 9999999999999875 3358999999


Q ss_pred             EccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEE
Q 008950          496 SKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRWK  546 (548)
Q Consensus       496 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~  546 (548)
                      |++.   ++.|++||++.++|.++..+.   +|++|.+..     .+.|.+.++++
T Consensus       574 D~D~---~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          574 DYDS---SSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             ECCS---SSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EcCC---CCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCCCceEEEEEEEEE
Confidence            9985   678999999999999986543   689997653     46788887764

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.24  E-value=1.1e-11  Score=137.06  Aligned_cols=106  Identities=35%  Similarity=0.518  Sum_probs=90.8

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecCC-CCEEEEEEEEcCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWDK  339 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d~  339 (548)
                      .+.|.|+|.+|++|.++|..|.+||||++++.+.  ...+++|+++++++||.|||+|.|.+.... ...|.++|||+|.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            5889999999999999999999999999999543  234578999999999999999999987433 4579999999999


Q ss_pred             CCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      .++|++||++.++++++.... ...|+.+.
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~-~~~w~~Ll  279 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAG-VDGWFKLL  279 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCC-EEEEEECB
T ss_pred             ccccccccccccchhhhccCC-cccceeec
Confidence            999999999999999998654 35666664

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.17  E-value=9e-11  Score=129.75  Aligned_cols=104  Identities=21%  Similarity=0.470  Sum_probs=89.6

Q ss_pred             ceEEEEEEeeeecCCC---CCCCCcEEEEEE-----cCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950          428 AGLLSVLVQGAEDVEG---ENHNNPYAIILY-----KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~---~~~~dpyv~v~l-----~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~  499 (548)
                      .+.|.|++.+|++|..   .+.+||||++++     ...+++|++++++.||.|||.|.|.+........|.++|||++.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            4689999999999976   368999999999     34567999999999999999999999876455679999999985


Q ss_pred             CccCCCCcceEEEEEechhhhccceeceEEEeCCCC
Q 008950          500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK  535 (548)
Q Consensus       500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~  535 (548)
                         .+.|++||.+.++++++...+. .+||.|.+..
T Consensus       251 ---~~~dd~iG~~~i~l~~l~~~~~-~~w~~Lls~~  282 (674)
T 3pfq_A          251 ---TSRNDFMGSLSFGISELQKAGV-DGWFKLLSQE  282 (674)
T ss_dssp             ---SSCCEECCBCCCBTTHHHHCCE-EEEEECBCTT
T ss_pred             ---ccccccccccccchhhhccCCc-ccceeecccc
Confidence               6889999999999999987654 8999997654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.14  E-value=1.7e-10  Score=128.29  Aligned_cols=119  Identities=18%  Similarity=0.270  Sum_probs=90.7

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc---cceeeeeeecC-CCCCeeec-eEEEE-EecCCCCEEEEEEEE
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKK-NLNPEWNE-NFKLV-VKEPESQILQLQVFD  336 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~v~~~-t~nP~Wne-~f~f~-v~~~~~~~L~v~v~d  336 (548)
                      ...|.|+|++|++|+..    .+||||+|.+.+..   ..+++|+++++ +.||+||| +|.|. +..+....|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            34799999999999853    68999999997521   12368998875 69999999 69998 766666789999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEeccc
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE  397 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~  397 (548)
                      +|    |++||++.+||..|..|-   ..++|...     ....-..|.|.+.+.+.....
T Consensus       800 ~d----ddfiG~~~lpL~~L~~Gy---R~vpL~~~-----~g~~l~~atLfv~i~~~~~~~  848 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSGY---HYVCLRNE-----ANQPLCLPALLIYTEASDYIP  848 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCEE---EEEEEECT-----TSCEEEEEEEEEEEEEEECCC
T ss_pred             CC----ccEEeeEEEEHHHcCCCc---eEEEecCC-----CCCccCceEEEEEEEEEecCC
Confidence            87    789999999999998763   23455321     011225689999998886543

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.12  E-value=2.7e-10  Score=126.62  Aligned_cols=115  Identities=22%  Similarity=0.332  Sum_probs=87.0

Q ss_pred             CceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc---ccceeeee-eec-CCCCCeeec-eEEE-EEecCCCCEEEEEE
Q 008950          262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTT-VKK-KNLNPEWNE-NFKL-VVKEPESQILQLQV  334 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~-v~~-~t~nP~Wne-~f~f-~v~~~~~~~L~v~v  334 (548)
                      ..|.|.|+|++|++|+.    +.+||||++.+.+.   ...+++|+ +++ ++.||+||| +|.| .+..+....|+|+|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46799999999999985    46899999999542   22346898 775 579999999 7999 78766667899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCC-ccccEEEEEEEEE
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDM-KQRGKIVVELTYV  393 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~-~~~G~l~l~l~~~  393 (548)
                      ||+|    +++||++.++++.|..|.   .+++|...      .+. -..+.|.+.+.+.
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G~---r~v~L~~~------~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSGY---HHLCLHSE------SNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCEE---EEEEEECT------TCCEEEEEEEEEEEEEE
T ss_pred             EEeC----CCccceEeeehhhcCCCc---EEEeccCC------CCCCCCceEEEEEEEEE
Confidence            9986    789999999999998752   34555321      111 2347777777653

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.11  E-value=4.1e-10  Score=124.57  Aligned_cols=118  Identities=18%  Similarity=0.309  Sum_probs=89.6

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCccc----ceeeeeeecC-CCCCeeece-EEEE-EecCCCCEEEEEEE
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----PWKKTTVKKK-NLNPEWNEN-FKLV-VKEPESQILQLQVF  335 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~----~~~~T~v~~~-t~nP~Wne~-f~f~-v~~~~~~~L~v~v~  335 (548)
                      .+.|.|+|++|++|+.+    .+||||++.+.+...    .+++|+++++ +.||+|||+ |.|. +..++...|+|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999853    689999999976321    3468998875 699999998 9998 76666678999999


Q ss_pred             EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecc
Q 008950          336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK  396 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  396 (548)
                      |++    |++||++.++|+.|..|-   ..++|...     ....-..+.|.+.+.+....
T Consensus       725 D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~-----~g~~~~~atLfv~i~~~~~~  773 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPGY---RHVPLRNE-----SNRPLGLASVFAHIVAKDYV  773 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCEE---EEEEEECT-----TSCEEEEEEEEEEEEEEECC
T ss_pred             ecC----CCeeeEEEEEHHHcCCcc---eEEEEeCC-----CCCCCCceEEEEEEEEEecC
Confidence            985    789999999999998763   23555321     01122347888888777543

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.00  E-value=4.9e-09  Score=86.93  Aligned_cols=113  Identities=19%  Similarity=0.318  Sum_probs=85.6

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccc-eeee-eeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLP-WKKT-TVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV  340 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~-~~~T-~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~  340 (548)
                      .+.|+|...++.--+-.......||||.+.+...... ..+| ..+++|..|+|||+|.-.+++  ...|.+.|++... 
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT-
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC-
Confidence            3678888866653222222246899999999754321 2355 677889999999999999875  6789999997653 


Q ss_pred             CCCCeeEEEEEECcccC-----CCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          341 GGHDRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       341 ~~dd~lG~~~i~l~~l~-----~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                         +|++.|++++++|.     .+...+.|++|            ++.|+|++.+.|+
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdL------------eP~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEe
Confidence               89999999999998     44566788887            4689999999887

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.97  E-value=3.5e-09  Score=117.16  Aligned_cols=108  Identities=22%  Similarity=0.283  Sum_probs=86.7

Q ss_pred             CceEEEEEEeeeecCCCCCCCCcEEEEEEcC-------eEEEeeeccC-CCCCccCce-EEEE-ccCCCCCCeEEEEEEE
Q 008950          427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG-------DKKRTKMIRK-TRDPAWNEE-FQFM-LDEPPLHEKIHIEVMS  496 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~-------~~~kT~v~~~-t~nP~wne~-f~f~-v~~~~~~~~l~v~V~d  496 (548)
                      ..+.|.|+|++|++|+.. .+||||+|.+.+       ++++|+++++ +.||+|||+ |+|. +..+ .-..|.++|+|
T Consensus       648 ~~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~p-ela~Lrf~V~D  725 (816)
T 3qr0_A          648 VAGTIEIKIISAQFLSDK-QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLP-DLAVVRIIVSE  725 (816)
T ss_dssp             CCEEEEEEEEEEECCCSS-CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCG-GGCEEEEEEEE
T ss_pred             cceEEEEEEEEcccCCCC-CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCC-CccEEEEEEEe
Confidence            357899999999999864 789999999975       4679999986 699999997 9998 7665 33589999999


Q ss_pred             ccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEE
Q 008950          497 KRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRWK  546 (548)
Q Consensus       497 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~  546 (548)
                      ++       +++||++.++|+.|..+.   ++.+|.+..     .+.|.+.+..+
T Consensus       726 ~d-------ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~~~atLfv~i~~~  770 (816)
T 3qr0_A          726 EN-------GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPLGLASVFAHIVAK  770 (816)
T ss_dssp             TT-------SCEEEEEEEESTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cC-------CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCCCceEEEEEEEEE
Confidence            74       489999999999987543   468887653     35666666554

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.93  E-value=4.2e-09  Score=117.14  Aligned_cols=107  Identities=19%  Similarity=0.237  Sum_probs=86.1

Q ss_pred             ceEEEEEEeeeecCCCCCCCCcEEEEEEcC------eEEEeeeccC-CCCCccCc-eEEEE-ccCCCCCCeEEEEEEEcc
Q 008950          428 AGLLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTKMIRK-TRDPAWNE-EFQFM-LDEPPLHEKIHIEVMSKR  498 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~------~~~kT~v~~~-t~nP~wne-~f~f~-v~~~~~~~~l~v~V~d~~  498 (548)
                      ...|.|+|++|++|+.. .+||||+|.+.+      .+++|+++++ +.||+||| +|+|. +..+ ....|.++|||++
T Consensus       724 ~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~p-ela~Lrf~V~D~d  801 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR-KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLP-TLASLRIAAFEEG  801 (885)
T ss_dssp             CEEEEEEEEEEESCCSS-CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCG-GGCEEEEEEEETT
T ss_pred             ceEEEEEEEEeccCccc-CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcC-CcCEEEEEEEcCC
Confidence            45799999999999874 689999999975      2469999986 59999999 69998 6654 3358999999975


Q ss_pred             CCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEE
Q 008950          499 TGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRWK  546 (548)
Q Consensus       499 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~  546 (548)
                             +++||++.++|+.|..+.   ++.+|.+..     .|.|.+.+..+
T Consensus       802 -------ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l~~atLfv~i~~~  844 (885)
T 3ohm_B          802 -------GKFVGHRILPVSAIRSGY---HYVCLRNEANQPLCLPALLIYTEAS  844 (885)
T ss_dssp             -------TEEEEEEEEETTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             -------ccEEeeEEEEHHHcCCCc---eEEEecCCCCCccCceEEEEEEEEE
Confidence                   589999999999986543   467887653     46788877765

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.93  E-value=5.2e-09  Score=116.41  Aligned_cols=108  Identities=21%  Similarity=0.298  Sum_probs=85.7

Q ss_pred             CceEEEEEEeeeecCCCCCCCCcEEEEEEcC------eEEEee-eccC-CCCCccCc-eEEE-EccCCCCCCeEEEEEEE
Q 008950          427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTK-MIRK-TRDPAWNE-EFQF-MLDEPPLHEKIHIEVMS  496 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~------~~~kT~-v~~~-t~nP~wne-~f~f-~v~~~~~~~~l~v~V~d  496 (548)
                      ..+.|.|+|++|++|+. +.+||||+|.+.+      +++||+ ++++ +.||+||| +|+| .+..+. -..|.++|+|
T Consensus       676 ~~~~L~V~Visa~~L~~-~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~e-l~~Lr~~V~D  753 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE-RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE-LASLRVAVME  753 (799)
T ss_dssp             TCEEEEEEEEEEESCCS-SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG-GCEEEEEEEE
T ss_pred             eeeeEEEEEEeccccCc-cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCC-ccEEEEEEEE
Confidence            46899999999999986 4789999999954      257999 8875 69999999 6999 786653 3489999999


Q ss_pred             ccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEE
Q 008950          497 KRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRWK  546 (548)
Q Consensus       497 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~  546 (548)
                      ++       +++||++.++|+.+..+   .++++|.+..     .+.|.+.++.+
T Consensus       754 ~d-------~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          754 EG-------NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             TT-------TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             eC-------CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEEE
Confidence            85       58999999999998653   3578887653     35666766654

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.92  E-value=4.9e-08  Score=80.97  Aligned_cols=107  Identities=18%  Similarity=0.313  Sum_probs=84.6

Q ss_pred             ceEEEEEEeeeec--CCC-CCCCCcEEEEEEcCeE----EEe-eeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950          428 AGLLSVLVQGAED--VEG-ENHNNPYAIILYKGDK----KRT-KMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       428 ~g~L~V~v~~a~~--L~~-~~~~dpyv~v~l~~~~----~kT-~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~  499 (548)
                      ...|++.+.++..  |+. ....||||.+.+....    .+| ...++|..|+||+.|.-.+.+.   ..|.+.|+++..
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~a~   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAAE   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT---CEEEEEEEEETT
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC---EEEEEEEEcCCC
Confidence            5678888877653  332 2368999999986544    254 7777899999999999999874   689999997641


Q ss_pred             CccCCCCcceEEEEEechhhhcc-----ceeceEEEeCCCCCeEEEEEEEEE
Q 008950          500 GIRFWSKESLGHVEINLTDVVHN-----GRINEKYHLINSKRGVIHVDIRWK  546 (548)
Q Consensus       500 ~~~~~~d~~lG~~~i~L~~l~~~-----~~~~~w~~L~~~~~G~i~l~~~~~  546 (548)
                             ++++.+++++++|+.+     +..+-|..|+  ++|+|++.++|-
T Consensus        82 -------~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--P~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 -------EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMSVQYF  124 (126)
T ss_dssp             -------EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEE
T ss_pred             -------CeeeEEEEEHHHHHhhhccCCCceEEEEecc--cCcEEEEEEEEe
Confidence                   8999999999999853     4567899997  599999999984

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.91  E-value=6.5e-09  Score=87.33  Aligned_cols=114  Identities=18%  Similarity=0.254  Sum_probs=87.3

Q ss_pred             ceEEEEEEEEecCccccC-CCCCCCcEEEEEEcCccc-ceeee-eeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCC
Q 008950          263 VGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKL-PWKKT-TVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK  339 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~~-~~~~T-~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~  339 (548)
                      .+.|+|.+.++.--+... .....||||.+.+..... ...+| ..+++|..|+|||+|.-.+++  .+.|.|.|++...
T Consensus         9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~   86 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKNV   86 (138)
T ss_dssp             CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSSC
T ss_pred             CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCCC
Confidence            467888887766433221 123589999999975432 23567 777789999999999988875  6789999996543


Q ss_pred             CCCCCeeEEEEEECcccC-----CCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          340 VGGHDRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~-----~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                          +|+..|++++.+|.     .+...+.|++|            ++.|+|++.+.|.-
T Consensus        87 ----~fVAn~tV~~edL~~~ck~~~g~~e~WvdL------------eP~Gkl~v~i~~~~  130 (138)
T 2enj_A           87 ----DLISETTVELYSLAERCRKNNGKTEIWLEL------------KPQGRMLMNARYFL  130 (138)
T ss_dssp             ----SCCEEEEEESHHHHHHHHHTTTCEEEEEEC------------BSSCEEEEEEEECC
T ss_pred             ----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEEE
Confidence                89999999999998     44566889887            46899999999973

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.85  E-value=5.1e-08  Score=81.89  Aligned_cols=108  Identities=17%  Similarity=0.262  Sum_probs=85.5

Q ss_pred             CceEEEEEEeeeecCCC----CCCCCcEEEEEEcCeE----EEe-eeccCCCCCccCceEEEEccCCCCCCeEEEEEEEc
Q 008950          427 GAGLLSVLVQGAEDVEG----ENHNNPYAIILYKGDK----KRT-KMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK  497 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~----~~~~dpyv~v~l~~~~----~kT-~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~  497 (548)
                      ..+.|+|.+.++.--+.    ....||||.|.+....    .+| ...++|..|+||+.|.-.+.+.   ..|.|.|+++
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~   84 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG---RVMQIIVKGK   84 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS---CEEEEEEECS
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC---eEEEEEEEcC
Confidence            35778888877764332    3469999999986542    366 6677899999999999998774   6899999965


Q ss_pred             cCCccCCCCcceEEEEEechhhhcc-----ceeceEEEeCCCCCeEEEEEEEEE
Q 008950          498 RTGIRFWSKESLGHVEINLTDVVHN-----GRINEKYHLINSKRGVIHVDIRWK  546 (548)
Q Consensus       498 ~~~~~~~~d~~lG~~~i~L~~l~~~-----~~~~~w~~L~~~~~G~i~l~~~~~  546 (548)
                      .       .++++.+++++.+|+.+     +..+-|..|+  ++|+|++.++|.
T Consensus        85 a-------~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--P~Gkl~v~i~~~  129 (138)
T 2enj_A           85 N-------VDLISETTVELYSLAERCRKNNGKTEIWLELK--PQGRMLMNARYF  129 (138)
T ss_dssp             S-------CSCCEEEEEESHHHHHHHHHTTTCEEEEEECB--SSCEEEEEEEEC
T ss_pred             C-------CCeeeEEEEEHHHHHhhhccCCCceEEEEecc--cCcEEEEEEEEE
Confidence            3       18999999999999853     4557899998  599999999984

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=92.13  E-value=2.2  Score=39.07  Aligned_cols=56  Identities=14%  Similarity=0.214  Sum_probs=40.8

Q ss_pred             ceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEEcCCCC----CCCeeEEEEEECc
Q 008950          299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVG----GHDRLGMQLVPLK  354 (548)
Q Consensus       299 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~----~dd~lG~~~i~l~  354 (548)
                      ...+|.|...+.+|.|+|++.+.+...  ....|.|+++......    .+..+|.+.+||-
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            346888888999999999999988643  3567999998765321    2236777777764

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=91.86  E-value=0.84  Score=39.39  Aligned_cols=115  Identities=17%  Similarity=0.319  Sum_probs=79.3

Q ss_pred             CCceEEEEEEeeeecCCC-----CCCCCcEEEEEE--cC-eEEEeeeccCCCCCccCceEEEEccCCC------CCCeEE
Q 008950          426 SGAGLLSVLVQGAEDVEG-----ENHNNPYAIILY--KG-DKKRTKMIRKTRDPAWNEEFQFMLDEPP------LHEKIH  491 (548)
Q Consensus       426 ~~~g~L~V~v~~a~~L~~-----~~~~dpyv~v~l--~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~------~~~~l~  491 (548)
                      ...+++.++|.++. +..     .+..+|+.-+.+  .. +.+.|.++. ..+|.||-+-.|.+....      ....+.
T Consensus        15 ~gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~   92 (156)
T 2yrb_A           15 RGENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   92 (156)
T ss_dssp             SSCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             CCCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence            35689999999886 221     134466544444  34 455666665 899999999999885421      022688


Q ss_pred             EEEEEccCCccCCCCcceEEEEEechhhhccc-eeceEEEeCCC-----CCeEEEEEEEEE
Q 008950          492 IEVMSKRTGIRFWSKESLGHVEINLTDVVHNG-RINEKYHLINS-----KRGVIHVDIRWK  546 (548)
Q Consensus       492 v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~w~~L~~~-----~~G~i~l~~~~~  546 (548)
                      +++.....    ..-..||.++|+|.+++... ++....+|.+.     .-|.++..++++
T Consensus        93 lELhqa~g----~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~  149 (156)
T 2yrb_A           93 LEVHQAYS----TEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLR  149 (156)
T ss_dssp             EEEEEECS----SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred             EEEEEeeC----CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEe
Confidence            99888653    24579999999999999754 45566677654     258999999887

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=91.18  E-value=2.9  Score=36.07  Aligned_cols=128  Identities=12%  Similarity=0.103  Sum_probs=84.2

Q ss_pred             cCCceEEEEEEEEecCccccC-CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC-------CCCEEE
Q 008950          260 KKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-------ESQILQ  331 (548)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-------~~~~L~  331 (548)
                      ....+.+.|+|.++.-=+..- ..+..+|+.-+.+.=-..+...|.+.. +.+|.+|-+-.|.|.-.       .+..+.
T Consensus        14 ~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~   92 (156)
T 2yrb_A           14 ERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   92 (156)
T ss_dssp             CSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             cCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence            445689999999987322211 124457766666654334445676655 88999999888888421       245799


Q ss_pred             EEEEEcCCCCCCCeeEEEEEECcccCCCCc-eEEEEeccccccCCCCCCC-ccccEEEEEEEEEec
Q 008950          332 LQVFDWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLKHTNISDPKDM-KQRGKIVVELTYVPF  395 (548)
Q Consensus       332 v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~-~~~~l~l~~~~~~~~~~~~-~~~G~l~l~l~~~p~  395 (548)
                      ++++.... +.-+.+|.+.|++.++...+. .....++..   +   .+. ..-|.|.+.++....
T Consensus        93 lELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g---~---~g~~~~~G~LeywiRL~~P  151 (156)
T 2yrb_A           93 LEVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIG---T---KGDIPNFGTVEYWFRLRVS  151 (156)
T ss_dssp             EEEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECB---S---SSCCTTSEEEEEEEEEEEC
T ss_pred             EEEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEc---C---CCCcceEEEEEEEEEEecc
Confidence            99998753 345689999999999986544 333444432   1   112 468999999987653

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=88.93  E-value=3.7  Score=46.65  Aligned_cols=93  Identities=23%  Similarity=0.199  Sum_probs=61.6

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccce-eeeeeecCCCCCeeeceEEEEEe---cCCCCEEEEEEEE
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKKKNLNPEWNENFKLVVK---EPESQILQLQVFD  336 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~---~~~~~~L~v~v~d  336 (548)
                      ...++|+|.++.++.... ....+-||.+.+  |++.... .+|+. ....+|.|||...|.+.   -|....|.|.||+
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~-~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQR-VPCSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCC-CCTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccc-cCCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            357899999999886432 234677888776  4443322 23433 34567889999999875   2447789999998


Q ss_pred             cCCC----CCCCeeEEEEEECcccC
Q 008950          337 WDKV----GGHDRLGMQLVPLKLLT  357 (548)
Q Consensus       337 ~d~~----~~dd~lG~~~i~l~~l~  357 (548)
                      ....    ..+..||.+.++|-+..
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCTT
T ss_pred             ecCccCcccccceeEEeeeeeEccC
Confidence            7542    12347888888887654

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=88.49  E-value=2.2  Score=48.03  Aligned_cols=92  Identities=11%  Similarity=0.105  Sum_probs=60.7

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccc-eeeeeeecCCCCCeeeceEEEEEe---cCCCCEEEEEEEE
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK---EPESQILQLQVFD  336 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~---~~~~~~L~v~v~d  336 (548)
                      ...+.|+|.++.++...   ..++-||.+.+  |+.... ...|+.+.-..+|.|||...|.+.   -|....|.|.+|+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            45799999999998754   34677887665  544331 234555555778999999999875   2347789999999


Q ss_pred             cCCC--C----------CCCeeEEEEEECcccC
Q 008950          337 WDKV--G----------GHDRLGMQLVPLKLLT  357 (548)
Q Consensus       337 ~d~~--~----------~dd~lG~~~i~l~~l~  357 (548)
                      ....  +          .+..+|.+.+++-+-.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCTT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECCc
Confidence            6431  1          1347788887776543

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=88.45  E-value=1.5  Score=49.28  Aligned_cols=93  Identities=9%  Similarity=0.141  Sum_probs=63.7

Q ss_pred             ceEEEEEEeeeecCCCCCCCCcEEEEEE--cCeE----EEeeeccCCCCCccCceEEEE--ccCCCCCCeEEEEEEEccC
Q 008950          428 AGLLSVLVQGAEDVEGENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFM--LDEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~~~~dpyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~--v~~~~~~~~l~v~V~d~~~  499 (548)
                      ...+.|+|.++.++......+-||++.+  |++.    ..|+.+....+|.|||-++|.  +.+.|.+..|.+.||+...
T Consensus       216 ~~~f~i~i~~~~~~~~~~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~  295 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVE  295 (940)
T ss_dssp             CSEEEEEEEEEECCCC---CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC-
T ss_pred             CCceEEEEEEecccCCCCCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecC
Confidence            4679999999999987666778888765  4432    466666668889999966665  4566677899999998531


Q ss_pred             C------c---cCCCCcceEEEEEechhhh
Q 008950          500 G------I---RFWSKESLGHVEINLTDVV  520 (548)
Q Consensus       500 ~------~---~~~~d~~lG~~~i~L~~l~  520 (548)
                      .      .   .-..+..+|.++++|-+-.
T Consensus       296 ~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          296 KAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             ---------------CEEEEEEEEESBCTT
T ss_pred             CccCccccccccccccceEEEEeeeEECCc
Confidence            0      0   0012459999999997753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	548
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-25
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	4e-11
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-20
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	6e-08
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	4e-20
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-06
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-20
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	9e-07
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	4e-19
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	8e-12
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	7e-18
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-07
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	7e-17
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	7e-07
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	7e-17
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	6e-07
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-16
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	1e-05
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-16
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-08
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	3e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	3e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-06
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	5e-15
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	7e-04
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-14
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	7e-06
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-13
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	5e-04
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	1e-12
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-05
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	3e-11
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	1e-06
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	4e-11
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	3e-07
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	1e-09
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	6e-09
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-07

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 99.0 bits (246), Expect = 3e-25
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 10/144 (6%)

Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
           S     P G L V +V A  L   DFL   DPYV+L+   +    K    +     PEWN
Sbjct: 2   SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD--QKSNVAEGMGTTPEWN 59

Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
           E F   V E  +++ + ++FD D     D +G   +PL+ +       F    +  T  +
Sbjct: 60  ETFIFTVSEGTTEL-KAKIFDKDVGTEDDAVGEATIPLEPV-------FVEGSIPPTAYN 111

Query: 376 DPKDMKQRGKIVVELTYVPFKEDS 399
             KD + +G+I V L++ P    S
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.0 bits (142), Expect = 4e-11
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 12/125 (9%)

Query: 429 GLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEP 484
           G L V++  A+ +E  +     +PY  +  +   +++ +       P WNE F F + E 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69

Query: 485 PLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI---NSKRGVIHV 541
               ++  ++  K         +++G   I L  V   G I    + +      +G I V
Sbjct: 70  --TTELKAKIFDKD---VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWV 124

Query: 542 DIRWK 546
            + +K
Sbjct: 125 ALSFK 129

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.8 bits (209), Expect = 2e-20
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 266 LHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
             V V+RA+K+ K    D L T DPYV+L ++      K+T     ++NP WNE F+ ++
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
              +  +L++ + D +     + LG     +  +   E KE      +            
Sbjct: 65  DPNQENVLEITLMDANY-VMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------VT 113

Query: 383 RGKIVVELTYVP 394
              + + L    
Sbjct: 114 EMVLEMSLEVAS 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 6e-08
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 14/127 (11%)

Query: 428 AGLLSVLVQGAEDVEGENHN------NPYAIILYKGD---KKRTKMIRKTRDPAWNEEFQ 478
           +   +V+V  A  V            +PY  +        +KRT+      +P WNE F 
Sbjct: 2   SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF- 60

Query: 479 FMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGV 538
             + +P     + I +M           E+LG     ++ +    +    +        V
Sbjct: 61  EFILDPNQENVLEITLMDANYV----MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMV 116

Query: 539 IHVDIRW 545
           + + +  
Sbjct: 117 LEMSLEV 123

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 4e-20
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
           K VGIL VKV++A+ LL  DF G SDP+  L L  ++L         KNLNPEWN+ F  
Sbjct: 3   KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT---VYKNLNPEWNKVFTF 59

Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDM 380
            +K+    + ++ VFD D     D LG   +PL  +   +   + L            + 
Sbjct: 60  PIKDIHDVL-EVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKD-------LEQ 111

Query: 381 KQRGKIVVELTYV 393
             +G I +E+  +
Sbjct: 112 AFKGVIYLEMDLI 124

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 11/122 (9%)

Query: 429 GLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP 485
           G+L V V  A D+   + +   +P+ ++    D+ +T  + K  +P WN+ F F + +  
Sbjct: 6   GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI- 64

Query: 486 LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR---INEKYHLINSKRGVIHVD 542
            H+ + + V  +         + LG V I L  +        + +   L  + +GVI+++
Sbjct: 65  -HDVLEVTVFDED---GDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLE 120

Query: 543 IR 544
           + 
Sbjct: 121 MD 122

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.4 bits (208), Expect = 5e-20
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 2/108 (1%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNEN--FKLV 321
             L V +++A++L   D  GTSDPYVK+ L  +K    +T V +K LNP +NE   FK+ 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
             E   + L + V+D+D+   HD +G   VP+  +      E   DL 
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.3 bits (109), Expect = 9e-07
 Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 42/163 (25%)

Query: 376 DPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLV 435
           +PK+ ++ GK+   L Y                                      L V +
Sbjct: 13  EPKEEEKLGKLQYSLDYDF--------------------------------QNNQLLVGI 40

Query: 436 QGAEDVEGENHN---NPYA---IILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEK 489
             A ++   +     +PY    ++  K  K  TK+ RKT +P +NE+F F +    L  K
Sbjct: 41  IQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGK 100

Query: 490 I-HIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL 531
              + V       RF   + +G  ++ +  V       E   L
Sbjct: 101 TLVMAVYDFD---RFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.3 bits (200), Expect = 4e-19
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLV 321
            +L V V  A  L+  D  G SDPYVKL L  +      +KT   K +LNPEWNE F+  
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 322 VKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
           +KE +  + L ++++DWD    +D +G     +  L       +   LL  
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW-FKLLSQ 124

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.5 bits (146), Expect = 8e-12
 Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 12/117 (10%)

Query: 429 GLLSVLVQGAEDVEGENHN---NPYAIILYKGDKK-----RTKMIRKTRDPAWNEEFQFM 480
            +L V+V+ A+++   + N   +PY  +    D K     +TK I+ + +P WNE F+F 
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 481 LDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRG 537
           L E     ++ +E+            + +G +   +++ +    ++  + L++ + G
Sbjct: 75  LKESDKDRRLSVEIWDWD---LTSRNDFMGSLSFGISE-LQKAGVDGWFKLLSQEEG 127

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 7e-18
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLV 321
             L V ++ A  L  ++     +PYVK+    ++     ++T   KK L P+WN+ F   
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 322 VKEP---ESQILQLQVFDWDKVGGH--DRLGMQLVPL-KLLTPHETKEFTL 366
                    ++L++ ++D  +V     + LG  L+ L   L   E   + L
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 124

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 426 SGAGLLSVLVQGAED---VEGENHNNPYAIILYKGDKK-----RTKMIRKTRDPAWNEEF 477
                L V + GA+D    E     NPY  I +  D+      RTK ++KT +P WN+ F
Sbjct: 11  KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 70

Query: 478 QFMLDEPP--LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR 524
            +            + I +  +   +R    E LG + I L   + +  
Sbjct: 71  IYSPVHRREFRERMLEITLWDQAR-VREEESEFLGEILIELETALLDDE 118

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.6 bits (185), Expect = 7e-17
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
           G L V ++ A  L K D  G SDPYVK+ L   G++L  KKTT+KK  LNP +NE+F   
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 322 VKEPESQILQLQV--FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379
           V   + Q +Q+ V   D+DK+G +D +G   V              +       I+    
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHT 144

Query: 380 MKQRGKIVVELT 391
           ++   ++   L 
Sbjct: 145 LQVEEEVDAMLA 156

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.7 bits (110), Expect = 7e-07
 Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 12/101 (11%)

Query: 428 AGLLSVLVQGAEDVEGENHN---NPYAIILYKGDK-----KRTKMIRKTRDPAWNEEFQF 479
           AG L+V++  A++++  +     +PY  I    +      K+T + + T +P +NE F F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 480 MLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDV 519
            +    +   ++ + V+      +    +++G V +     
Sbjct: 84  EVPFEQIQKVQVVVTVLDYD---KIGKNDAIGKVFVGYNST 121

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.3 bits (184), Expect = 7e-17
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 14/137 (10%)

Query: 250 PILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--------- 300
           PI     + I   +G L + +++A  L+ +D  G SDP+VK+ L   +            
Sbjct: 4   PITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63

Query: 301 --KKTTVKKKNLNPEWNENFKLVV---KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKL 355
             ++T   +K+LNPEWN+         ++   + L++ V+D+D+   +D LG  L+ L  
Sbjct: 64  YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123

Query: 356 LTPHETKEFTLDLLKHT 372
            +  +       L + T
Sbjct: 124 TSHLDNTPRWYPLKEQT 140

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (110), Expect = 6e-07
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 22/123 (17%)

Query: 428 AGLLSVLVQGAEDV---EGENHNNPYAIILYKGD--------------KKRTKMIRKTRD 470
            G L + +  A ++   +   +++P+  +                   K+RTK ++K+ +
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 471 PAWNEEFQF--MLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEK 528
           P WN+   +  +  E  + + + + V       RF S + LG V I+L+   H       
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYD---RFSSNDFLGEVLIDLSSTSHLDNTPRW 133

Query: 529 YHL 531
           Y L
Sbjct: 134 YPL 136

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 2e-16
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
               V +  A  L   D    TSDPY+K+++  EK    KT V +K L+P ++E F    
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 323 KEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK-EFTLDLLK 370
                     L   +  +D+    D +G  L+PL  +   E K     +++ 
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 13/118 (11%)

Query: 428 AGLLSVLVQGAEDV----EGENHNNPYAIILYKGDKKR---TKMIRKTRDPAWNEEFQFM 480
                V ++ A  +    E    ++PY  +    +KK    T+++RKT DPA++E F F 
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80

Query: 481 LDEPPLHEK--IHIEVMSKRTGIRFWSKESLGHVEINLTDV-VHNGRINEKYHLINSK 535
                  ++  +H  ++S     RF   + +G V I L+ + +  G++     +I+  
Sbjct: 81  GIPYTQIQELALHFTILSFD---RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.6 bits (180), Expect = 3e-16
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
             L V V++A  L K D  G SDPYVK++L   K     KKT VKK   N  +NE F   
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 322 VKEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLK 354
           +     +   ++  V D ++   ++ +G  ++   
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 109

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 14/124 (11%)

Query: 425 LSGAGLLSVLVQGAED---VEGENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEE 476
            S    L+V+V  A      +    ++PY  +          KK+T + + T +  +NE 
Sbjct: 11  QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNEL 70

Query: 477 FQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK 535
           F F +    L    +   V+      R    E +G + +  T             + +  
Sbjct: 71  FVFDIPCESLEEISVEFLVLDSE---RGSRNEVIGRLVLGATAEGS--GGGHWKEICDFP 125

Query: 536 RGVI 539
           R  I
Sbjct: 126 RRQI 129

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.0 bits (173), Expect = 3e-15
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK--TTVKKKNLNPEWNENFKLV 321
           G+L V +++AS L   D  G SDPYVK SL  E    KK  T++KK  LNP +NE     
Sbjct: 20  GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79

Query: 322 V--KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
           V  +  E+  L + V D+D +G ++ +G+  V  +   PH  + +  ++L +
Sbjct: 80  VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHW-AEMLAN 130

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 3e-15
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 15/136 (11%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
             L + V+ A     K       PYV++++ G+    KKT       +P+W +   ++V 
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVT 62

Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPH----ETKEFTLDLLKHTNISDPK 378
                 L  +V+    +     LG   + +   L  +    E    TL L       D +
Sbjct: 63  PV--SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLG-----GDKE 115

Query: 379 DMKQRGKIVVELTYVP 394
             +  G + + L  + 
Sbjct: 116 PTETIGDLSICLDGLQ 131

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 14/126 (11%)

Query: 424 ALSGAGLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFM 480
           +L+    L + V  A+  E + +    +PY  +   G  K+T+    T  P W +    +
Sbjct: 1   SLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVI 60

Query: 481 LDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVV--HNGRINEK---YHLINSK 535
           +       K+H  V S +      S   LG   +++ + +  +N ++ E      L   K
Sbjct: 61  VTP---VSKLHFRVWSHQ---TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK 114

Query: 536 RGVIHV 541
                +
Sbjct: 115 EPTETI 120

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.8 bits (170), Expect = 5e-15
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 261 KPVGILHVKVVRASKLLK--KDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN 315
           +P   L V+++   +L K  K+     DP V + + G        +   +     NP W+
Sbjct: 2   RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60

Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
             F+  V  P+  +++  V D+D    +D +G   +P   L    
Sbjct: 61  MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY 105

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 19/129 (14%)

Query: 431 LSVLVQGAEDV-----EGENHNNPYAIILYKGD-----KKRTKMIRKT-RDPAWNEEFQF 479
           L V +   + +        +  +P  I+   G       ++T +I     +P W+ EF+F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 480 MLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR----INEKYHLINSK 535
            +  P     +   V            + +G   I    +    R    +++      S 
Sbjct: 66  EVTVPD-LALVRFMVEDYD---SSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSA 121

Query: 536 RGVIHVDIR 544
              + + I+
Sbjct: 122 TLFVKISIQ 130

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.3 bits (166), Expect = 2e-14
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 4/107 (3%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK--TTVKKKNLNPEWNENFKLV 321
           G L V ++R   L   D  G SDP+VKL L  +     K  T +KKK LNPE+NE F   
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 322 VKEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTL 366
           +K  +     L + V+D+D    +D +G   + +          +  
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYEC 121

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (102), Expect = 7e-06
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 428 AGLLSVLVQGAED---VEGENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQF 479
            G L V +        ++   +++P+  +  K D     K +T++ +KT +P +NEEF +
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73

Query: 480 MLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVI 539
            +    L +K     +         S + +G  ++ ++      R+   Y  + +K   I
Sbjct: 74  DIKHSDLAKKSLDISVWDYD--IGKSNDYIGGCQLGISAKGE--RLKHWYECLKNKDKKI 129

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.0 bits (157), Expect = 2e-13
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 4/111 (3%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
             L V++++A  L  KD  G SDPYVK+ L  ++    +T V +K LNP +NE   F + 
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77

Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTL--DLLK 370
           + E   + L   V+D+D+   HD +G  ++   L    +  +  L  D+L+
Sbjct: 78  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 425 LSGAGLLSVLVQGAEDVEGENHNNP------YAIILYKGDKKRTKMIRKTRDPAWNEEFQ 478
           L G+  L V +  A D+  ++ N          ++  +  K +TK+ RKT +P +NE FQ
Sbjct: 14  LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 73

Query: 479 FMLDEPPLHE-KIHIEVMSKRTGIRFWSKESLGHVEINLTDVV 520
           F +    L + K+H  V       RF   + +G V ++    +
Sbjct: 74  FSVPLAELAQRKLHFSVYDFD---RFSRHDLIGQVVLDNLLEL 113

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 63.4 bits (153), Expect = 1e-12
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 25/142 (17%)

Query: 264 GILHVKVVRASKLLKKDFL-----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNP 312
           G+L +K+  A  L    +               DPY+ L++   +    +T  K+K  +P
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSP 63

Query: 313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
            W++ F   V        +L VF    +G  D +    +  + L  + ++ F   +    
Sbjct: 64  AWHDEFVTDVCNGRKI--ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI---- 117

Query: 373 NISDPKDMKQRGKIVVELTYVP 394
                 D++  GK+ V +    
Sbjct: 118 ------DLEPEGKVYVIIDLSG 133

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 21/133 (15%)

Query: 429 GLLSVLVQGAEDVEGENHN--------------NPYAIILYKGDK-KRTKMIRKTRDPAW 473
           GLL + +  A  ++    +              +PY  +     +  +T   +KT  PAW
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 474 NEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN 533
           ++EF   +      E   + V            + + +  I   +++ NG  + +  +  
Sbjct: 66  HDEFVTDVCNGRKIE---LAVFHDA---PIGYDDFVANCTIQFEELLQNGSRHFEDWIDL 119

Query: 534 SKRGVIHVDIRWK 546
              G ++V I   
Sbjct: 120 EPEGKVYVIIDLS 132

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 3e-11
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLS-LTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
             L V  + A      +  G  D YV+ S          +T +KK+ L+  W E   L +
Sbjct: 26  AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 323 KEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
            E E     L L +   D+   H   G   + L   +         +L   
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 21/136 (15%), Positives = 34/136 (25%), Gaps = 15/136 (11%)

Query: 413 GSGNDQSSDEEA---------LSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD----K 459
           GS     S  +A               L V    A     +   + Y            +
Sbjct: 1   GSSGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVE 60

Query: 460 KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDV 519
            +T + ++     W E     L E           ++ RT  RF      G + + L   
Sbjct: 61  AQTALKKRQLHTTWEEGLVLPLAEE--ELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118

Query: 520 VHNGRINEKYHLINSK 535
                  +   L  S 
Sbjct: 119 SVPLGAAQWGELKTSG 134

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.2 bits (140), Expect = 4e-11
 Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 17/131 (12%)

Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVV 322
            L +          +     S P+  + +         K    KK  + PEW   F   +
Sbjct: 4   FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63

Query: 323 KEPESQILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
            E     +Q+ +    +       +G+ ++  +    +   EF LDL            +
Sbjct: 64  YEGRV--IQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------Q 109

Query: 382 QRGKIVVELTY 392
            + K+++ + Y
Sbjct: 110 PQAKVLMCVQY 120

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 445 NHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT 499
           + + P+  +  K        K     + T  P W   F        ++E   I+++  R 
Sbjct: 22  DASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDA-----HIYEGRVIQIVLMRA 76

Query: 500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRW 545
                S+ ++G   +      +NG+      L    +  + + +++
Sbjct: 77  AEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL--QPQAKVLMCVQY 120

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG-----EKLPWKKTTVKKKNLNPEWNEN--F 318
           L + V+    L ++        YV++ L G     ++    K +    ++NP W E    
Sbjct: 3   LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
              +  PE   L++ V +      +  LG +++P+  L   
Sbjct: 59  FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSG 95

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 6e-09
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 18/126 (14%)

Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
            +L V V +A     ++     + YV L +   K     TT+  +   P W ++F   + 
Sbjct: 2   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK----STTIAVRGSQPSWEQDFMFEIN 54

Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL--TPHETKEFTLDLLKHTNISDPKDMK 381
             +  +  ++V++   +     +G   +PL+ +  +  E     L L       D + + 
Sbjct: 55  RLDLGLT-VEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTL-------DSQAIM 105

Query: 382 QRGKIV 387
              +I 
Sbjct: 106 ADSEIC 111

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE 488
            LL V V+ A+    +   N Y  +  +  K  T  + +   P+W ++F F ++   L  
Sbjct: 2   SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRLDLGL 60

Query: 489 KIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR 524
            + +                 G V I L  +  +  
Sbjct: 61  TVEVWNKGLIWDTMV------GTVWIPLRTIRQSNE 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	548
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.88
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.85
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.84
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.8
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.8
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.78
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.78
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.78
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.77
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.77
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.76
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.76
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.75
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.74
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.73
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.72
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.72
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.72
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.72
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.71
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.71
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.7
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.7
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.69
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.68
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.68
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.68
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.66
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.66
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.65
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.64
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.64
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.64
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.63
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.63
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.61
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.58
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.53
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.36
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.24
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	94.62
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	91.35

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.1e-23  Score=174.90  Aligned_cols=122  Identities=36%  Similarity=0.573  Sum_probs=105.4

Q ss_pred             CCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC
Q 008950          261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV  340 (548)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~  340 (548)
                      .+.|+|+|+|++|++|+.+|..|.+||||++++++++   ++|+++++|.||.|||+|.|.+.++ .+.|.|+|||++..
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~---~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~   78 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD   78 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeE---EEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence            4789999999999999999999999999999999765   5899999999999999999999765 47899999999999


Q ss_pred             CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          341 GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       341 ~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                      ++|++||++.++++++..+..+++++....       .....+|+|+++++|.
T Consensus        79 ~~d~~lG~~~i~l~~l~~~~~~~~~l~~~~-------~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          79 KPPDFLGKVAIPLLSIRDGQPNCYVLKNKD-------LEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEEEECCBCEEEGGGCCSSCCEECCCBCSC-------TTSCCSSEEEEEEEEE
T ss_pred             cCcceEEEEEEEHHHCCCCCceEEEccccC-------CCCceeEEEEEEEEEE
Confidence            999999999999999988776665543221       1345679999999875

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=2.2e-21  Score=168.21  Aligned_cols=127  Identities=31%  Similarity=0.510  Sum_probs=106.0

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeec-CCCCCeeeceEEEEEecCCCCEEEEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFD  336 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d  336 (548)
                      ....|.|+|+|+|++|++|+..|..|++||||+++++++.   .+|++++ ++.||.|||+|.|.+.+. ...|.|+|||
T Consensus         4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~---~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d   79 (136)
T d1wfja_           4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFD   79 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECC
T ss_pred             CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeee---EEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEE
Confidence            3456889999999999999999999999999999998765   4677765 689999999999999864 4679999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCC-CceEEEEeccccccCCCCCCCccccEEEEEEEEEecc
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK  396 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~  396 (548)
                      +|..++|++||++.++|.++... .....|+.+.+        +++.+|+|+++++|.|..
T Consensus        80 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~--------~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECC
T ss_pred             ecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC--------CCccCEEEEEEEEEEeCC
Confidence            99999999999999999987543 33345555532        256789999999999864

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.2e-21  Score=161.99  Aligned_cols=121  Identities=26%  Similarity=0.405  Sum_probs=105.5

Q ss_pred             ceEEEEEEEEecCcccc---CCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCC
Q 008950          263 VGILHVKVVRASKLLKK---DFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK  339 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~---d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~  339 (548)
                      .+.|+|+|++|+||+..   |..|.+||||++++++.....++|+++.++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            47899999999999874   456899999999998766556799999999999999999999988777899999999986


Q ss_pred             CCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      . +|++||++.++|+++..+..+..|++|.          ....|+|++++++.|
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~----------~~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVAS  125 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECCC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEcc----------CCCeEEEEEEEEEEe
Confidence            4 6899999999999999988888999883          345799999998765

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-19  Score=154.52  Aligned_cols=115  Identities=20%  Similarity=0.383  Sum_probs=101.9

Q ss_pred             ceEEEEEEeeeecCCCC------CCCCcEEEEEEcC---eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEcc
Q 008950          428 AGLLSVLVQGAEDVEGE------NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR  498 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~------~~~dpyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~  498 (548)
                      ++.|+|+|++|+||+..      +.+||||++.+++   ++++|++++++.||.|||+|.|.+.+. ..+.|.|+|||++
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~-~~~~L~v~V~d~d   80 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCc-ccCcEEEEEEECC
Confidence            57899999999999863      5789999999976   567999999999999999999999875 4568999999987


Q ss_pred             CCccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEEe
Q 008950          499 TGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWKM  547 (548)
Q Consensus       499 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~~  547 (548)
                      .    .+|++||++.++|+++..+.....||+|.+.++|+|++++++.|
T Consensus        81 ~----~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          81 Y----VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS  125 (126)
T ss_dssp             S----SCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred             C----CCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEEe
Confidence            3    46899999999999998888888999999988999999999865

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.80  E-value=3.2e-19  Score=154.08  Aligned_cols=118  Identities=24%  Similarity=0.340  Sum_probs=100.8

Q ss_pred             CceEEEEEEEEecCccccC-----------CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEE
Q 008950          262 PVGILHVKVVRASKLLKKD-----------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQIL  330 (548)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d-----------~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L  330 (548)
                      ..|.|+|+|++|++|++.+           ..+.+||||+++++++..  ++|++++++.||.|||+|.|.+.+  .+.|
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~--~~T~~~~~t~~P~Wne~f~f~v~~--~~~l   79 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSPAWHDEFVTDVCN--GRKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcC--cEeeEEcCCCCccCccEEEEEEec--CCce
Confidence            3599999999999998754           346789999999987653  589999999999999999999975  3689


Q ss_pred             EEEEEEcCCCCCCCeeEEEEEECcccCCCC--ceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950          331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPHE--TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF  395 (548)
Q Consensus       331 ~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~--~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~  395 (548)
                      +|+|||++.+++|++||++.++|+++..+.  ....|++|            .+.|++++.+.+.|.
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L------------~p~G~v~l~v~~~~~  134 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEEE
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeC------------CCCcEEEEEEEEEeC
Confidence            999999999999999999999999997654  35578876            246999999999875

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.3e-19  Score=151.35  Aligned_cols=113  Identities=25%  Similarity=0.450  Sum_probs=97.9

Q ss_pred             CceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccC
Q 008950          427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRF  503 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~  503 (548)
                      ..|.|+|+|++|+||+.   .+.+||||++++++++++|++++++.||.|||.|+|.+.++  .+.|.|+|||++.   +
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~---~   78 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG---D   78 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET---T
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc--CceeEEEEEEccC---C
Confidence            36999999999999986   35799999999999999999999999999999999999875  4689999999875   5


Q ss_pred             CCCcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEE
Q 008950          504 WSKESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDIRWK  546 (548)
Q Consensus       504 ~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~  546 (548)
                      +.|++||++.++|+++..+.  .+||.|...     .+|.|+|++++-
T Consensus        79 ~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          79 KPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             cCcceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence            67899999999999986654  578888543     379999998863

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.6e-19  Score=151.45  Aligned_cols=121  Identities=20%  Similarity=0.292  Sum_probs=98.2

Q ss_pred             eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950          264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH  343 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d  343 (548)
                      +.|.|+|++|++++.++..+++||||++.++++.   ++|++++++.||.|||.|.|.+.+  .+.|+|+|||++.+++|
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d   80 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSD   80 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCC
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeE---EeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCC
Confidence            7899999999999998888899999999999865   589999999999999999999864  46899999999999999


Q ss_pred             CeeEEEEEECcccCCC-----CceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          344 DRLGMQLVPLKLLTPH-----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       344 d~lG~~~i~l~~l~~~-----~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      ++||++.++|+++...     ...+.++.+...     .......|+|.+.+.+..
T Consensus        81 ~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-----~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          81 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEE
T ss_pred             ceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-----CCCceEEEEEEEEEeeEE
Confidence            9999999999987432     233445544321     123467799999987764

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=6.7e-19  Score=152.31  Aligned_cols=116  Identities=22%  Similarity=0.455  Sum_probs=100.6

Q ss_pred             CceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeecc-CCCCCccCceEEEEccCCCCCCeEEEEEEEccCCcc
Q 008950          427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIR  502 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~  502 (548)
                      ..|.|+|+|++|++|+..   +.+||||++++++..++|++++ ++.||.|||+|+|.+.+.  ...|+|+|||++.   
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~--~~~L~v~V~d~d~---   82 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKAKIFDKDV---   82 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS--CCEEEEEECCSSS---
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc--cceEEEEEEEecC---
Confidence            469999999999999864   6899999999999999999987 589999999999999874  3579999999985   


Q ss_pred             CCCCcceEEEEEechhhhccc-eeceEEEeCCCC--CeEEEEEEEEEe
Q 008950          503 FWSKESLGHVEINLTDVVHNG-RINEKYHLINSK--RGVIHVDIRWKM  547 (548)
Q Consensus       503 ~~~d~~lG~~~i~L~~l~~~~-~~~~w~~L~~~~--~G~i~l~~~~~~  547 (548)
                      ++.|++||++.|+|.++.... ....||+|...+  .|+|+|+++|+|
T Consensus        83 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p  130 (136)
T d1wfja_          83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKP  130 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEe
Confidence            678899999999999987654 446799986543  699999999998

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=4.9e-19  Score=152.30  Aligned_cols=106  Identities=21%  Similarity=0.457  Sum_probs=89.5

Q ss_pred             ceEEEEEEeeeecCCCC---CCCCcEEEEEE-----cCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950          428 AGLLSVLVQGAEDVEGE---NHNNPYAIILY-----KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~---~~~dpyv~v~l-----~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~  499 (548)
                      .+.|.|+|++|+||+..   +.+||||++++     +..+++|+++++|.||+|||.|.|.+........|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            46899999999999863   57899999999     44567999999999999999999999775445589999999975


Q ss_pred             CccCCCCcceEEEEEechhhhccceeceEEEeCCCCCe
Q 008950          500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRG  537 (548)
Q Consensus       500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G  537 (548)
                         ++.|++||++.|+|+++..+ ..++||+|.+.+.|
T Consensus        94 ---~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g  127 (132)
T d1a25a_          94 ---TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG  127 (132)
T ss_dssp             ---SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred             ---CCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCC
Confidence               67889999999999998654 45789999875444

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.77  E-value=2.5e-18  Score=148.38  Aligned_cols=113  Identities=21%  Similarity=0.317  Sum_probs=98.1

Q ss_pred             CceEEEEEEeeeecCCC--------------CCCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEE
Q 008950          427 GAGLLSVLVQGAEDVEG--------------ENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIH  491 (548)
Q Consensus       427 ~~g~L~V~v~~a~~L~~--------------~~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~  491 (548)
                      -+|.|+|+|.+|++|+.              .+.+||||+++++++. .+|++++++.||.|||.|.|.+.+.   +.|.
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~---~~l~   80 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE   80 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC---CceE
Confidence            37999999999999974              2468999999999876 4899999999999999999999753   5899


Q ss_pred             EEEEEccCCccCCCCcceEEEEEechhhhccc--eeceEEEeCCCCCeEEEEEEEEEe
Q 008950          492 IEVMSKRTGIRFWSKESLGHVEINLTDVVHNG--RINEKYHLINSKRGVIHVDIRWKM  547 (548)
Q Consensus       492 v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~--~~~~w~~L~~~~~G~i~l~~~~~~  547 (548)
                      |+|||++.   ++.|++||.+.++|+++..+.  ..+.||+|.  ++|+|+++++++|
T Consensus        81 i~V~d~~~---~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--p~G~v~l~v~~~~  133 (136)
T d1gmia_          81 LAVFHDAP---IGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEECCS---SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             EEEEEecC---CCCceeEEEEEEEHHHhhhcCCcceeEEEeCC--CCcEEEEEEEEEe
Confidence            99999874   678999999999999998764  467899997  5799999998876

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.7e-18  Score=151.04  Aligned_cols=111  Identities=33%  Similarity=0.434  Sum_probs=97.3

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD  336 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d  336 (548)
                      ++...+.|+|+|++|+||+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        29 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d  108 (143)
T d1rsya_          29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD  108 (143)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence            4456689999999999999999999999999999965554557999999999999999999988532  46789999999


Q ss_pred             cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950          337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL  369 (548)
Q Consensus       337 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~  369 (548)
                      ++..+++++||++.++|+++..++....|++|.
T Consensus       109 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_         109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             cCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            999999999999999999998888788888873

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2.1e-18  Score=148.35  Aligned_cols=107  Identities=35%  Similarity=0.503  Sum_probs=91.6

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecCC-CCEEEEEEEEcCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWDK  339 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d~  339 (548)
                      .+.|.|+|++|+||+.+|..|.+||||++++.+.  ...+++|+++++|.||+|||+|.|.+.... ...|.|+|||+|.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            4889999999999999999999999999999432  234578999999999999999999987543 4579999999999


Q ss_pred             CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 008950          340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK  370 (548)
Q Consensus       340 ~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~  370 (548)
                      .++|++||++.++++++..+ ....|++|..
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~  123 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS  123 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence            99999999999999998765 3566888743

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.9e-18  Score=149.52  Aligned_cols=120  Identities=23%  Similarity=0.304  Sum_probs=100.1

Q ss_pred             CCccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEE
Q 008950          379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILY  455 (548)
Q Consensus       379 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l  455 (548)
                      .....|+|++++.|.+.                                .+.|.|+|++|+||+..   +.+||||++++
T Consensus        16 ~~~~~G~l~~sl~y~~~--------------------------------~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l   63 (143)
T d1rsya_          16 EEEKLGKLQYSLDYDFQ--------------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFL   63 (143)
T ss_dssp             --CCCCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEE
T ss_pred             chhcceEEEEEEEEeCC--------------------------------CCEEEEEEEEccCCCCCCCCCCCCeEEEEEE
Confidence            34568999999999763                                46899999999999863   57899999999


Q ss_pred             ---cCeEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950          456 ---KGDKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL  531 (548)
Q Consensus       456 ---~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L  531 (548)
                         +.++++|++++++.||.|||+|.|.+.... ....|.|+|||++.   ++.+++||++.++|+++..+....+||+|
T Consensus        64 ~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~---~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  140 (143)
T d1rsya_          64 LPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR---FSKHDIIGEFKVPMNTVDFGHVTEEWRDL  140 (143)
T ss_dssp             ETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS---SSCCEEEEEEEEEGGGCCCSSCEEEEEEC
T ss_pred             cCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC---CCCCcEEEEEEEEchhccCCCCCccEEeC
Confidence               445679999999999999999999876432 23579999999874   67889999999999999777777899999


Q ss_pred             CC
Q 008950          532 IN  533 (548)
Q Consensus       532 ~~  533 (548)
                      +.
T Consensus       141 ~s  142 (143)
T d1rsya_         141 QS  142 (143)
T ss_dssp             BC
T ss_pred             CC
Confidence            75

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=3.5e-18  Score=146.41  Aligned_cols=112  Identities=31%  Similarity=0.451  Sum_probs=92.1

Q ss_pred             cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEE
Q 008950          258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF  335 (548)
Q Consensus       258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~  335 (548)
                      .+....+.|.|+|++|+||+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+...  ....|.|+||
T Consensus        12 ~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~   91 (130)
T d1dqva1          12 RYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY   91 (130)
T ss_dssp             ECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred             EEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEE
Confidence            35567799999999999999999999999999999976655568999999999999999999998643  3567999999


Q ss_pred             EcCCCCCCCeeEEEEEECcc-cCCC-CceEEEEecc
Q 008950          336 DWDKVGGHDRLGMQLVPLKL-LTPH-ETKEFTLDLL  369 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~-l~~~-~~~~~~l~l~  369 (548)
                      |++.+++|++||++.+++.. +... .....|++|.
T Consensus        92 d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~  127 (130)
T d1dqva1          92 DFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL  127 (130)
T ss_dssp             ECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred             EcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence            99999999999999998643 3322 2344566664

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=5.1e-18  Score=145.34  Aligned_cols=119  Identities=25%  Similarity=0.335  Sum_probs=96.5

Q ss_pred             ccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc-
Q 008950          381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK-  456 (548)
Q Consensus       381 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~-  456 (548)
                      .+.|+|.++++|.|.                                .+.|.|+|++|+||+..   +.+||||++++. 
T Consensus         2 ~p~G~l~~sl~y~~~--------------------------------~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~   49 (130)
T d1dqva1           2 APCGRISFALRYLYG--------------------------------SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLP   49 (130)
T ss_dssp             CSSCEEEEEEECCSS--------------------------------SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEECC--------------------------------CCEEEEEEEeeeCCccccCCCCcceEEEEEEcc
Confidence            457999999999763                                57899999999999863   578999999994 


Q ss_pred             --CeEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccc--eeceEEEe
Q 008950          457 --GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNG--RINEKYHL  531 (548)
Q Consensus       457 --~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~--~~~~w~~L  531 (548)
                        .++++|++++++.||+|||+|.|.+..... ...|.|+|||++.   ++.|++||++.|++...+...  ....||+|
T Consensus        50 ~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~---~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L  126 (130)
T d1dqva1          50 DRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR---FSRHDLIGQVVLDNLLELAEQPPDRPLWRDI  126 (130)
T ss_dssp             STTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS---SSCCCEEEEEECCCTTGGGSSCSSCCCCEEC
T ss_pred             CCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCC---CCCCceEEEEEECchhhhhcCCCCCcEEEec
Confidence              356799999999999999999999865422 3479999999974   678999999999865544332  34569999


Q ss_pred             CCC
Q 008950          532 INS  534 (548)
Q Consensus       532 ~~~  534 (548)
                      .+.
T Consensus       127 ~~~  129 (130)
T d1dqva1         127 LEG  129 (130)
T ss_dssp             BCC
T ss_pred             ccC
Confidence            864

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=3.9e-18  Score=147.59  Aligned_cols=126  Identities=25%  Similarity=0.444  Sum_probs=103.0

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK---  456 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~---  456 (548)
                      +|+|.++++|.|.                                .+.|.|+|++|+||+.   .+.+||||++++.   
T Consensus         1 rG~l~l~l~Y~~~--------------------------------~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~   48 (137)
T d2cm5a1           1 RGKILVSLMYSTQ--------------------------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDM   48 (137)
T ss_dssp             CCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC-
T ss_pred             CcEEEEEEEEECC--------------------------------CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCC
Confidence            5999999999874                                5789999999999985   3579999999983   


Q ss_pred             --CeEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950          457 --GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN  533 (548)
Q Consensus       457 --~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~  533 (548)
                        ..+++|++++++.||.|||+|.|.+..... ...|.|.||+.+.   ++.+++||++.+++.++..  ...+||+|.+
T Consensus        49 ~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~---~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~  123 (137)
T d2cm5a1          49 GKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI---GKSNDYIGGCQLGISAKGE--RLKHWYECLK  123 (137)
T ss_dssp             --CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS---SSCCEEEEEEEEETTCCHH--HHHHHHHHHH
T ss_pred             ccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCC---CCCCCEEEEEEeCccccCc--chhhhhhHhh
Confidence              245699999999999999999999865422 3479999999874   6789999999999987543  3357998888


Q ss_pred             CCCeEEEEEEEEEeC
Q 008950          534 SKRGVIHVDIRWKMI  548 (548)
Q Consensus       534 ~~~G~i~l~~~~~~~  548 (548)
                      ++...+.   +|+++
T Consensus       124 ~~~~~v~---~Wh~L  135 (137)
T d2cm5a1         124 NKDKKIE---RWHQL  135 (137)
T ss_dssp             CTTCCEE---EEEEC
T ss_pred             CCCCeee---Eceec
Confidence            7776665   78775

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=3.3e-17  Score=140.38  Aligned_cols=122  Identities=22%  Similarity=0.385  Sum_probs=90.4

Q ss_pred             eEEEEEEEEecCcccc--CCCCCCCcEEEEEEcCcc--cceeeeeeec-CCCCCeeeceEEEEEecCCCCEEEEEEEEcC
Q 008950          264 GILHVKVVRASKLLKK--DFLGTSDPYVKLSLTGEK--LPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWD  338 (548)
Q Consensus       264 g~L~V~V~~A~~L~~~--d~~g~~dpyv~v~l~~~~--~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d  338 (548)
                      ..|+|+|++|++|+..  +..+++||||++++.+..  ..+++|++++ ++.||.|||+|.|.+..+....|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            4799999999999754  456889999999995422  2346788765 5579999999999987767788999999999


Q ss_pred             CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950          339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV  393 (548)
Q Consensus       339 ~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~  393 (548)
                      ..++|++||++.++|+++..+.   .+++|...     ....-..+.|.+++.+.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g~---~~~~L~~~-----~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQGY---RHVHLLSK-----NGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCEE---EEEEEECT-----TSCEEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCCC---EEEECCCC-----CcCCCCCCEEEEEEEEE
Confidence            9999999999999999997652   34555321     01122456777777653

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.3e-17  Score=140.40  Aligned_cols=121  Identities=16%  Similarity=0.113  Sum_probs=102.4

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCCCCCCcEEEEEEcC--
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG--  457 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~--  457 (548)
                      ....|+|++++.|.+.                                .+.|.|+|++|++|+..+.+||||++++.+  
T Consensus         9 ~~~~~~l~~sl~y~~~--------------------------------~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~   56 (138)
T d1wfma_           9 WNQAPKLHYCLDYDCQ--------------------------------KAELFVTRLEAVTSNHDGGCDCYVQGSVANRT   56 (138)
T ss_dssp             CSSCCEEEEEEEEETT--------------------------------TTEEEEEEEEEECCCCSSCCCEEEEEEEEETT
T ss_pred             CCcCCEEEEEEEECCC--------------------------------CCEEEEEEEEcCCCCCCCCcCcEEEEEECCCC
Confidence            4567999999999863                                468999999999999888899999999953  


Q ss_pred             --eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950          458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS  534 (548)
Q Consensus       458 --~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~  534 (548)
                        ..++|++++++.||+|||.|.|.+..... ...|.|+|||++.   ++.+++||++.|+|.++........||+|...
T Consensus        57 ~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~---~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_          57 GSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR---FSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             EEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS---SCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             CccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc---cccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence              23689999999999999999999876432 3579999999875   67899999999999998666666899999876


Q ss_pred             C
Q 008950          535 K  535 (548)
Q Consensus       535 ~  535 (548)
                      +
T Consensus       134 ~  134 (138)
T d1wfma_         134 G  134 (138)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=4.7e-18  Score=147.24  Aligned_cols=126  Identities=22%  Similarity=0.326  Sum_probs=95.5

Q ss_pred             ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc--C
Q 008950          383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--G  457 (548)
Q Consensus       383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~--~  457 (548)
                      +|+|+++++|.|.                                .+.|.|+|++|+||+..   +.+||||++++.  +
T Consensus         1 rG~l~~sl~Y~~~--------------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~   48 (138)
T d1w15a_           1 RGELLVSLCYQST--------------------------------TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAK   48 (138)
T ss_dssp             CCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCC------CCCEEEEEEEEETT
T ss_pred             CcEEEEEEEEcCC--------------------------------CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCc
Confidence            5999999999974                                57899999999999863   578999999982  2


Q ss_pred             ---eEEEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950          458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN  533 (548)
Q Consensus       458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~  533 (548)
                         .+++|++++++.||.|||+|.|.+...... ..|.|+|||++.   ++.+++||++.|++.+...  ...+|+.+..
T Consensus        49 ~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~---~~~~~~iG~~~i~l~~~~~--~~~hW~~ll~  123 (138)
T d1w15a_          49 KRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER---GSRNEVIGRLVLGATAEGS--GGGHWKEICD  123 (138)
T ss_dssp             EEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT---TSCCEEEEEEEESTTCCSH--HHHHHHHHHH
T ss_pred             ccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC---CCCCCEEEEEEEcchhCCc--hHHHHHHHHh
Confidence               335899999999999999999998664333 369999999875   6789999999999976422  2345666555


Q ss_pred             CCCeEEEEEEEEEeC
Q 008950          534 SKRGVIHVDIRWKMI  548 (548)
Q Consensus       534 ~~~G~i~l~~~~~~~  548 (548)
                      ++...|.   +|+++
T Consensus       124 ~~~k~i~---~Wh~L  135 (138)
T d1w15a_         124 FPRRQIA---KWHML  135 (138)
T ss_dssp             STTCCEE---EEEEC
T ss_pred             CCCCeee---ECeEc
Confidence            5443333   56553

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.3e-17  Score=140.41  Aligned_cols=110  Identities=25%  Similarity=0.350  Sum_probs=90.7

Q ss_pred             ccCCceEEEEEEEEecCccccCCCC-CCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC---CCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g-~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v  334 (548)
                      +....+.|.|+|++|+||+.++..+ .+||||++++.+.....++|++++++.||.|||+|.|.....   ....|+|+|
T Consensus        17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V   96 (138)
T d1ugka_          17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI   96 (138)
T ss_dssp             EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence            4455689999999999999988665 479999999976655567899999999999999999974322   246899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccCCC-CceEEEEec
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDL  368 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~~~-~~~~~~l~l  368 (548)
                      ||+|.+++|++||++.++|+++... ...+++..+
T Consensus        97 ~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_          97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             EECCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            9999999999999999999998644 345566665

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1e-16  Score=135.93  Aligned_cols=121  Identities=18%  Similarity=0.288  Sum_probs=90.5

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG  342 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~  342 (548)
                      +++|.|+|.+|++|.+++   +.||||++++++.+   .+|.+++ +.||.|||+|.|.+.++ .+.|.|+|||++.. +
T Consensus         1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k---~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~   71 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK---STTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-W   71 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEE---EECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-C
T ss_pred             CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEE---EEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-C
Confidence            378999999999999976   67999999998754   5777776 55999999999999876 57899999999875 6


Q ss_pred             CCeeEEEEEECcccCCC--CceEEEEeccccccCCC----CCCCccccEEEEEEEE
Q 008950          343 HDRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISD----PKDMKQRGKIVVELTY  392 (548)
Q Consensus       343 dd~lG~~~i~l~~l~~~--~~~~~~l~l~~~~~~~~----~~~~~~~G~l~l~l~~  392 (548)
                      |++||++.|+|+++...  .....|+.|........    .........|.++.+|
T Consensus        72 d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          72 DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             CcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            99999999999999643  33445777643211100    0012345578887776

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=6.4e-18  Score=147.20  Aligned_cols=108  Identities=28%  Similarity=0.419  Sum_probs=91.9

Q ss_pred             ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCccc-----------ceeeeeeecCCCCCeeeceEEEEEec---CCCC
Q 008950          263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL-----------PWKKTTVKKKNLNPEWNENFKLVVKE---PESQ  328 (548)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~-----------~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~  328 (548)
                      .|.|.|+|++|+||+.+|..|.+||||++++.+...           .+++|++++++.||.|||+|.|.+..   ....
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            489999999999999999999999999999954321           12579999999999999999997432   2467


Q ss_pred             EEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 008950          329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK  370 (548)
Q Consensus       329 ~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~  370 (548)
                      .|.|+|||+|.+++|++||++.++|.++..++....|++|..
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~  138 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcC
Confidence            899999999999999999999999999988777778888754

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=5.7e-17  Score=137.48  Aligned_cols=110  Identities=23%  Similarity=0.293  Sum_probs=92.0

Q ss_pred             eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcc
Q 008950          429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKES  508 (548)
Q Consensus       429 g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~  508 (548)
                      ++|.|+|.+|++|.+++..||||++.+++.+.+|.+++ +.||.|||.|.|.+.++  .+.|.|+|||++    ...|++
T Consensus         2 ~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~--~~~L~v~V~d~~----~~~d~~   74 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL--DLGLTVEVWNKG----LIWDTM   74 (128)
T ss_dssp             EEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC--SSEEEEEEEECC----SSCEEE
T ss_pred             eEEEEEEEEEECCCCCCCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc--cceEEEEEEeCC----CcCCcc
Confidence            57999999999999988899999999999988999886 55999999999999875  468999999986    346899


Q ss_pred             eEEEEEechhhhcc--ceeceEEEeCCCC--------------CeEEEEEEEE
Q 008950          509 LGHVEINLTDVVHN--GRINEKYHLINSK--------------RGVIHVDIRW  545 (548)
Q Consensus       509 lG~~~i~L~~l~~~--~~~~~w~~L~~~~--------------~G~i~l~~~~  545 (548)
                      ||++.|+|+++...  ....+||+|....              ..+|.++++|
T Consensus        75 lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          75 VGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             eEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            99999999999754  3456899995431              4567777765

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.6e-17  Score=137.78  Aligned_cols=115  Identities=26%  Similarity=0.441  Sum_probs=89.3

Q ss_pred             cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc----
Q 008950          384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK----  456 (548)
Q Consensus       384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~----  456 (548)
                      |+|++++.|.+.                                .+.|.|+|++|+||+..   +.+||||++++.    
T Consensus         1 G~l~l~l~y~~~--------------------------------~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~   48 (125)
T d2bwqa1           1 GQLSIKLWFDKV--------------------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRS   48 (125)
T ss_dssp             CEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCS
T ss_pred             CEEEEEEEEECC--------------------------------CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCC
Confidence            899999999864                                57899999999999863   578999999982    


Q ss_pred             -CeEEEeeeccCCCCCccCceEEEEc-cCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950          457 -GDKKRTKMIRKTRDPAWNEEFQFML-DEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI  532 (548)
Q Consensus       457 -~~~~kT~v~~~t~nP~wne~f~f~v-~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~  532 (548)
                       ..+++|++++++.||.|||+|.|.. .... ....|.|+|||.+.. ....+++||++.++|+++..++. .+||+|+
T Consensus        49 ~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~-~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          49 DKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV-REEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             GGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC--------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             CccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCC-CCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence             3457999999999999999999963 3221 134799999998742 12446699999999999876554 5899985

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.2e-17  Score=145.33  Aligned_cols=118  Identities=22%  Similarity=0.373  Sum_probs=97.0

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK  456 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~  456 (548)
                      ....|+|++++.|.                                  .|.|.|+|++|+||+..   +.+||||++++.
T Consensus         3 ~p~~G~l~lsl~y~----------------------------------~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~   48 (142)
T d1rh8a_           3 HPITGEIQLQINYD----------------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLL   48 (142)
T ss_dssp             CCCCCEEEEEEEEE----------------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEET
T ss_pred             CCcceEEEEEEEEe----------------------------------CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEe
Confidence            34679999999884                                  36799999999999863   579999999984


Q ss_pred             C--------------eEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccCCccCCCCcceEEEEEechhhh
Q 008950          457 G--------------DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVV  520 (548)
Q Consensus       457 ~--------------~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~  520 (548)
                      .              .+++|++++++.||.|||.|.|.+....  ....|.|+|||++.   +++|++||++.|+|.++.
T Consensus        49 ~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~---~~~~~~lG~~~i~L~~l~  125 (142)
T d1rh8a_          49 PGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR---FSSNDFLGEVLIDLSSTS  125 (142)
T ss_dssp             TSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECS---SSCEEEEEEEEEETTSCG
T ss_pred             cCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecC---CCCCeeeEEEEEEhHHcC
Confidence            2              1247999999999999999999754321  23479999999975   677899999999999998


Q ss_pred             ccceeceEEEeCCC
Q 008950          521 HNGRINEKYHLINS  534 (548)
Q Consensus       521 ~~~~~~~w~~L~~~  534 (548)
                      ......+||+|.+.
T Consensus       126 ~~~~~~~W~~L~~~  139 (142)
T d1rh8a_         126 HLDNTPRWYPLKEQ  139 (142)
T ss_dssp             GGTTCCEEEECBCC
T ss_pred             CCCCceEEEECcCc
Confidence            77777899999865

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.4e-17  Score=138.82  Aligned_cols=109  Identities=21%  Similarity=0.178  Sum_probs=92.7

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc-cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK-LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF  335 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~-~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~  335 (548)
                      ++...+.|.|+|++|++|+.   .|.+||||++++.+.. ...++|++++++.||+|||+|.|.+...  ....|.|+||
T Consensus        21 y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~   97 (138)
T d1wfma_          21 YDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR   97 (138)
T ss_dssp             EETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred             ECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence            45567899999999999954   4789999999996542 3346899999999999999999998643  3678999999


Q ss_pred             EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 008950          336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK  370 (548)
Q Consensus       336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~  370 (548)
                      |++.++++++||++.|+|.++........|++|..
T Consensus        98 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_          98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             eecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            99999999999999999999987777788888843

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.1e-16  Score=135.50  Aligned_cols=114  Identities=19%  Similarity=0.299  Sum_probs=93.0

Q ss_pred             ceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       428 ~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      .+.|.|+|++|++++..   +.+||||++.++++.++|++++++.||.|||.|+|.+.+   .+.|.|+|||++.   ++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~---~~~l~~~V~d~d~---~~   78 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQT---LK   78 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCS---SS
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe---cceeEEEEEEccC---CC
Confidence            47899999999999763   478999999999999999999999999999999999865   3589999999985   78


Q ss_pred             CCcceEEEEEechhhhcc--c-e--eceEEEeCCC-----CCeEEEEEEEEEe
Q 008950          505 SKESLGHVEINLTDVVHN--G-R--INEKYHLINS-----KRGVIHVDIRWKM  547 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~~--~-~--~~~w~~L~~~-----~~G~i~l~~~~~~  547 (548)
                      .|++||++.++|.+++..  . .  ...|+.|.+.     ..|+|.+.+...+
T Consensus        79 ~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          79 SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence            899999999999998653  1 2  2234444332     2589888877544

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.2e-16  Score=133.14  Aligned_cols=120  Identities=23%  Similarity=0.347  Sum_probs=95.0

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC----CCCCcEEEEEE
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILY  455 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l  455 (548)
                      +..-|+|++++.|.+.                                ...|.|+|++|+||+..    +.+||||++++
T Consensus         5 ~~~~G~l~~sl~Y~~~--------------------------------~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l   52 (138)
T d1ugka_           5 SSGLGTLFFSLEYNFE--------------------------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTI   52 (138)
T ss_dssp             CCCCCEEEEEEEEEGG--------------------------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEeCC--------------------------------CCEEEEEEEEecCCCCCCCCCCccceEEEEEE
Confidence            4567999999999874                                46899999999999863    24799999999


Q ss_pred             ---cCeEEEeeeccCCCCCccCceEEEEccCCCC--CCeEEEEEEEccCCccCCCCcceEEEEEechhhhc-cceeceEE
Q 008950          456 ---KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL--HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVH-NGRINEKY  529 (548)
Q Consensus       456 ---~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~-~~~~~~w~  529 (548)
                         +..+++|++++++.||.|||+|.|.......  ...|.|+|||++.   +++|++||++.++|+++.. ......|.
T Consensus        53 ~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~---~~~~~~iG~~~i~L~~~~~~~~~~~~~~  129 (138)
T d1ugka_          53 LPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR---FSRDDIIGEVLIPLSGIELSEGKMLMNR  129 (138)
T ss_dssp             ETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS---SCCCCCCEEEEEECTTCCCTTCCEEEEE
T ss_pred             cCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC---CCCCcEEEEEEEEcccccCCCCeEEEEe
Confidence               4456799999999999999999997433211  3479999999874   6789999999999999854 34445566


Q ss_pred             EeCCC
Q 008950          530 HLINS  534 (548)
Q Consensus       530 ~L~~~  534 (548)
                      .+...
T Consensus       130 ~~~~~  134 (138)
T d1ugka_         130 EIISG  134 (138)
T ss_dssp             ECBSS
T ss_pred             eccCC
Confidence            65444

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.8e-16  Score=134.64  Aligned_cols=109  Identities=24%  Similarity=0.362  Sum_probs=84.9

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEE-Eec--CCCCEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQ  333 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~  333 (548)
                      ++...+.|+|+|++|+||+..+..+.+||||++++.+.  ....++|++++++.||.|||+|.|. +..  .....|.|+
T Consensus         9 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~   88 (125)
T d2bwqa1           9 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT   88 (125)
T ss_dssp             EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred             EECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEE
Confidence            45566899999999999999998899999999999543  3345789999999999999999996 432  235689999


Q ss_pred             EEEcCCC--CCCCeeEEEEEECcccCCCCceEEEEec
Q 008950          334 VFDWDKV--GGHDRLGMQLVPLKLLTPHETKEFTLDL  368 (548)
Q Consensus       334 v~d~d~~--~~dd~lG~~~i~l~~l~~~~~~~~~l~l  368 (548)
                      |||++..  +++++||++.++++++...+. ..|++|
T Consensus        89 v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L  124 (125)
T d2bwqa1          89 LWDQARVREEESEFLGEILIELETALLDDE-PHWYKL  124 (125)
T ss_dssp             EEEC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred             EEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence            9999975  345699999999999876543 346665

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.6e-16  Score=135.11  Aligned_cols=99  Identities=28%  Similarity=0.358  Sum_probs=78.3

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC--cccceeeeeeecCCCCCeeeceEEEEEecCC--CCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v  334 (548)
                      +.+..+.|.|+|++|+||+.++..+.+||||++++.+  ....+++|++++++.||.|||+|.|.+....  ...|.|+|
T Consensus        10 Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v   89 (138)
T d1w15a_          10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV   89 (138)
T ss_dssp             EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred             EcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEE
Confidence            3445689999999999999999889999999999843  3334568999999999999999999985433  45799999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccC
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLT  357 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~  357 (548)
                      ||++.++++++||++.+++.+..
T Consensus        90 ~d~~~~~~~~~iG~~~i~l~~~~  112 (138)
T d1w15a_          90 LDSERGSRNEVIGRLVLGATAEG  112 (138)
T ss_dssp             EECCTTSCCEEEEEEEESTTCCS
T ss_pred             EeCCCCCCCCEEEEEEEcchhCC
Confidence            99999999999999999998653

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=7.1e-16  Score=136.29  Aligned_cols=98  Identities=38%  Similarity=0.544  Sum_probs=85.0

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecCC--CCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v  334 (548)
                      +.+..+.|.|+|++|+||+..+..+.+||||++++.+.  ....++|++++++.||+|||+|.|.+....  ...|.|+|
T Consensus        20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v   99 (157)
T d1uowa_          20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV   99 (157)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence            45566899999999999999998999999999998643  334468999999999999999999986542  56899999


Q ss_pred             EEcCCCCCCCeeEEEEEECccc
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLL  356 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l  356 (548)
                      ||++.++++++||++.+++...
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_         100 LDYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             EECCSSSCCCEEEEEEEETTCC
T ss_pred             cccCCCCCCceeEEEEEecccC
Confidence            9999999999999999999764

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=8.4e-16  Score=135.79  Aligned_cols=119  Identities=24%  Similarity=0.418  Sum_probs=96.2

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK  456 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~  456 (548)
                      .+..|+|.++++|.|.                                .+.|.|+|++|+||+.   .+.+||||++++.
T Consensus         8 ~~~~G~l~~sl~Y~~~--------------------------------~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~   55 (157)
T d1uowa_           8 LEKLGDICFSLRYVPT--------------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM   55 (157)
T ss_dssp             GGCCCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred             ceeeeEEEEEEEEcCC--------------------------------CCEEEEEEEEEEEcccccCCCCCCeeEEEEEe
Confidence            4568999999999974                                5789999999999986   3589999999984


Q ss_pred             C-----eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhh----------h
Q 008950          457 G-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDV----------V  520 (548)
Q Consensus       457 ~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l----------~  520 (548)
                      .     ..++|++++++.||+|||+|.|.+..... ...|.++|||++.   ++++++||++.|++.+.          +
T Consensus        56 ~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~---~~~~~~iG~~~i~l~~~~~~~~hW~~~~  132 (157)
T d1uowa_          56 QNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK---IGKNDAIGKVFVGYNSTGAELRHWSDML  132 (157)
T ss_dssp             ETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS---SSCCCEEEEEEEETTCCHHHHHHHHHHH
T ss_pred             cCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCC---CCCCceeEEEEEecccCChhHHHHHHHH
Confidence            3     23589999999999999999999876432 3479999999885   77899999999999653          3


Q ss_pred             cc--ceeceEEEeCC
Q 008950          521 HN--GRINEKYHLIN  533 (548)
Q Consensus       521 ~~--~~~~~w~~L~~  533 (548)
                      ..  ..+.+||+|..
T Consensus       133 ~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         133 ANPRRPIAQWHTLQV  147 (157)
T ss_dssp             HSTTCCEEEEEECBC
T ss_pred             hCCCCceeEeEeCCC
Confidence            22  24567888864

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.8e-18  Score=147.54  Aligned_cols=129  Identities=20%  Similarity=0.381  Sum_probs=101.8

Q ss_pred             CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 008950          380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK  456 (548)
Q Consensus       380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~  456 (548)
                      ....|+|+++++|.|.                                .|.|.|+|++|+||+.   .+.+||||++++.
T Consensus         3 ~~~~G~l~~sl~Y~~~--------------------------------~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~   50 (145)
T d1dqva2           3 KADLGELNFSLCYLPT--------------------------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLI   50 (145)
T ss_dssp             CSCCCEEEEEEEEETT--------------------------------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCC
T ss_pred             cCcceEEEEEEEEcCC--------------------------------CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEc
Confidence            4568999999999974                                5899999999999975   3568999999985


Q ss_pred             Ce-----EEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEE
Q 008950          457 GD-----KKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYH  530 (548)
Q Consensus       457 ~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~  530 (548)
                      +.     +++|++++++.||.|||.|.|.+.... ....|.|+|+|++.   ++.+++||++.|++..+...+ ..+||+
T Consensus        51 ~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~---~~~~~~iG~~~i~l~~~~~~~-~~~W~~  126 (145)
T d1dqva2          51 SEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC---IGHNEVIGVCRVGPEAADPHG-REHWAE  126 (145)
T ss_dssp             TTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS---SSCCEEEEECCCSSCTTCHHH-HHHHHT
T ss_pred             cCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCC---CCCCcEEEEEEECchHcCchh-hHHHHH
Confidence            42     468999999999999999999876432 23479999999874   678899999999998764332 357888


Q ss_pred             eCCCCCeEEEEEEEEEe
Q 008950          531 LINSKRGVIHVDIRWKM  547 (548)
Q Consensus       531 L~~~~~G~i~l~~~~~~  547 (548)
                      |..++...|.   +|++
T Consensus       127 l~~~p~~~i~---~Wh~  140 (145)
T d1dqva2         127 MLANPRKPVE---HWHQ  140 (145)
T ss_dssp             SSSSSSSCSC---SCCC
T ss_pred             HHhCCCCeee---EeEE
Confidence            7766655443   5554

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=5.8e-16  Score=133.64  Aligned_cols=99  Identities=34%  Similarity=0.456  Sum_probs=85.1

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v  334 (548)
                      +....|.|.|+|++|+||+..+..+.+||||++++.+.  ....++|++++++.||.|||+|.|.+...  ....|.|.|
T Consensus        10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v   89 (137)
T d2cm5a1          10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV   89 (137)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence            34567899999999999999998899999999998542  34457899999999999999999998643  356899999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccC
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLT  357 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~  357 (548)
                      ||++..+++++||++.+++.++.
T Consensus        90 ~~~~~~~~~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          90 WDYDIGKSNDYIGGCQLGISAKG  112 (137)
T ss_dssp             EECCSSSCCEEEEEEEEETTCCH
T ss_pred             eeCCCCCCCCEEEEEEeCccccC
Confidence            99999999999999999998754

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.5e-15  Score=129.83  Aligned_cols=111  Identities=17%  Similarity=0.308  Sum_probs=88.3

Q ss_pred             eEEEEEEeeeecCCC-----CCCCCcEEEEEEc-----CeEEEeeeccCC-CCCccCceEEEEccCCCCCCeEEEEEEEc
Q 008950          429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYK-----GDKKRTKMIRKT-RDPAWNEEFQFMLDEPPLHEKIHIEVMSK  497 (548)
Q Consensus       429 g~L~V~v~~a~~L~~-----~~~~dpyv~v~l~-----~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~v~V~d~  497 (548)
                      ..|.|+|++|++|+.     .+.+||||++++.     ..+++|++++++ .||.|||+|+|.+..+ ..+.|.++|||+
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~-~~~~L~~~V~D~   82 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVEDY   82 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG-GGCEEEEEEEEC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc-hhceEEEEEEEe
Confidence            479999999999974     2468999999994     356799988765 6999999999998775 446899999999


Q ss_pred             cCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEE
Q 008950          498 RTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRWK  546 (548)
Q Consensus       498 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~  546 (548)
                      +.   .+.|++||++.++|+++..+   .+|++|.+..     .+.|.++++++
T Consensus        83 d~---~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          83 DS---SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             CT---TTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cC---CCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            85   67789999999999988543   4689997653     35666777664

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=3.2e-15  Score=125.91  Aligned_cols=109  Identities=20%  Similarity=0.333  Sum_probs=86.0

Q ss_pred             EEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950          266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH  343 (548)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d  343 (548)
                      +.|.++.+..++.  ..+.+||||++++.+..  ...++|+++++|+||+|||+|.|.+.+  .+.|.|.|||+|    |
T Consensus         7 ~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d----d   78 (123)
T d1bdya_           7 ISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----T
T ss_pred             EEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----c
Confidence            4444555555544  46899999999996532  123578999999999999999999975  468999999986    6


Q ss_pred             CeeEEEEEECcccC-----CCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950          344 DRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP  394 (548)
Q Consensus       344 d~lG~~~i~l~~l~-----~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p  394 (548)
                      +++|.+.+++.++.     .+...+.|++|            ..+|+|+++++|++
T Consensus        79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L------------~~~Gkl~l~v~~f~  122 (123)
T d1bdya_          79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEEE
T ss_pred             cccCccEEehhheeeccccCCCcccEEEeC------------CCCEEEEEEEEEec
Confidence            89999999998885     35567788887            25799999999985

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=7e-15  Score=123.77  Aligned_cols=105  Identities=15%  Similarity=0.291  Sum_probs=84.6

Q ss_pred             EEEEEeeeecCCC-CCCCCcEEEEEEcCe-----EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950          431 LSVLVQGAEDVEG-ENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW  504 (548)
Q Consensus       431 L~V~v~~a~~L~~-~~~~dpyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~  504 (548)
                      +.+.++.+..++. .+.+||||++++++.     .++|+++++|+||+|||+|+|.+.+.   +.+.|.|+|++      
T Consensus         7 ~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~---~~l~i~V~d~d------   77 (123)
T d1bdya_           7 ISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA------   77 (123)
T ss_dssp             EEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT---CEEEEEEEEET------
T ss_pred             EEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc---cEEEEEEEEcc------
Confidence            3444455555544 458999999999653     35799999999999999999999763   57999999975      


Q ss_pred             CCcceEEEEEechhhhc-----cceeceEEEeCCCCCeEEEEEEEEEe
Q 008950          505 SKESLGHVEINLTDVVH-----NGRINEKYHLINSKRGVIHVDIRWKM  547 (548)
Q Consensus       505 ~d~~lG~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~~~  547 (548)
                       |+++|.+.+++.++..     +...+.|++|.  ++|+|+++++|-+
T Consensus        78 -d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          78 -EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             -TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             -ccccCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence             4799999999999965     34667899996  6999999999964

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.3e-15  Score=132.66  Aligned_cols=99  Identities=36%  Similarity=0.524  Sum_probs=85.3

Q ss_pred             ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEE
Q 008950          259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV  334 (548)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v  334 (548)
                      +....|.|.|+|++|+||+..+..+.+||||++++.+..  ..+++|++++++.||.|||+|.|.+..  .....|.|.|
T Consensus        15 Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v   94 (145)
T d1dqva2          15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV   94 (145)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred             EcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEE
Confidence            455679999999999999999988999999999997543  234689999999999999999998753  2356799999


Q ss_pred             EEcCCCCCCCeeEEEEEECcccC
Q 008950          335 FDWDKVGGHDRLGMQLVPLKLLT  357 (548)
Q Consensus       335 ~d~d~~~~dd~lG~~~i~l~~l~  357 (548)
                      ||++..++|++||++.+++..+.
T Consensus        95 ~d~~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          95 VDYDCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             EECCSSSCCEEEEECCCSSCTTC
T ss_pred             EecCCCCCCcEEEEEEECchHcC
Confidence            99999999999999999998764

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1e-12  Score=110.01  Aligned_cols=87  Identities=24%  Similarity=0.450  Sum_probs=66.8

Q ss_pred             EEEEEEEEecCccccCCCCCCCcEEEEEEcCc---ccceeeee--eecCCCCCeeece-EEE-EEecCCCCEEEEEEEEc
Q 008950          265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTT--VKKKNLNPEWNEN-FKL-VVKEPESQILQLQVFDW  337 (548)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~--v~~~t~nP~Wne~-f~f-~v~~~~~~~L~v~v~d~  337 (548)
                      .|.|+|++|++|+.+    +.||||++++-+.   ...+++|+  +..++.||.|||. |.| .+..++...|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            589999999999865    4799999999531   12223333  3478999999975 444 35555556899999997


Q ss_pred             CCCCCCCeeEEEEEECcccCCC
Q 008950          338 DKVGGHDRLGMQLVPLKLLTPH  359 (548)
Q Consensus       338 d~~~~dd~lG~~~i~l~~l~~~  359 (548)
                      |    |++||++.+|++.+..|
T Consensus        78 d----~~~lG~~~ipl~~l~~G   95 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG   95 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE
T ss_pred             C----CCEEEEEEEEcccCcCC
Confidence            5    78999999999999876

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.9e-11  Score=99.58  Aligned_cols=99  Identities=22%  Similarity=0.326  Sum_probs=72.8

Q ss_pred             EEEEEEeeeecCCCCCCCCcEEEEEEcC------eEEEeee--ccCCCCCccCce-EEEE-ccCCCCCCeEEEEEEEccC
Q 008950          430 LLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTKM--IRKTRDPAWNEE-FQFM-LDEPPLHEKIHIEVMSKRT  499 (548)
Q Consensus       430 ~L~V~v~~a~~L~~~~~~dpyv~v~l~~------~~~kT~v--~~~t~nP~wne~-f~f~-v~~~~~~~~l~v~V~d~~~  499 (548)
                      .|.|+|++|++|+.. ..||||++++-|      ++++|++  ..++.||.|||. |.|. +..+ ....|.+.|||++ 
T Consensus         2 tl~V~Visaq~L~~~-~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~-~l~~L~f~V~D~d-   78 (122)
T d2zkmx2           2 TLSITVISGQFLSER-SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAVMEEG-   78 (122)
T ss_dssp             EEEEEEEEEESCCSS-CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEEEETT-
T ss_pred             EEEEEEEEeeCCCCC-CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCC-cccEEEEEEECCC-
Confidence            588999999999864 689999999843      3345554  356899999975 4443 4443 3348999999975 


Q ss_pred             CccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEE
Q 008950          500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIH  540 (548)
Q Consensus       500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~  540 (548)
                            |++||++.++|+.+..+.   ++.+|.+..+..+.
T Consensus        79 ------~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g~~l~  110 (122)
T d2zkmx2          79 ------NKFLGHRIIPINALNSGY---HHLCLHSESNMPLT  110 (122)
T ss_dssp             ------TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEE
T ss_pred             ------CCEEEEEEEEcccCcCCc---eEEEccCCCcCCCC
Confidence                  589999999999886543   67888776544443