Citrus Sinensis ID: 008953

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
Protein Sequence
MEMEARRQNNNKGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEcccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHcccccccccccccEEHccEEEEEcccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHc
Coil and Loop (DISEMBL)
memearrqnnnkgteveestvdwkgrpsnpnkhggmKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGgylsdsflgSFWTMLIFGFVELSGFILLSVQahlpqlkppkcnmvtdsenceeakgfKASIFFLALYLVAIGsgcvkpnmiahgadqfdqsnpkqskklSSYFNAAYFAFSTGELVALTVLVWVQthsgmdvgFGVSAAAMALGLFGVVSGtlyyrnkrpqgsiftPIAQVFVAAMLKrkqicpsnpqmlhglnqnnvpndsgsvfltQRFRFLDKACIKvedgtnkkespwrlcTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQgsamnnkltknfhvppaslqsipyIMLVILVPlydkffvpfarkytghesgisplqrIGFGLFLATFSMISAALMEKKRRdsaldsgktlsifsitPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTssssnrgwlsendlstktglifstgc
Flexible Loop (DISEMBL)
memearrqnnnkgteveestvdwkGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVedgtnkkespwrlCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSsssnrgwlsendlstktglifstgc
Low Complexity Region (SEG)
MEMEARRQNNNKGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTycsysfgfylssllvsfVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC
Disordered region (IsUnstruct)
************************************KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHG***************SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSN*QMLHGL********SGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALME*********SGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT**************************
Disordered Region (DISOPRED)
*********************DW**********GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPP***************GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN***SKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNP************************RFLDK*******************TVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC
Disordered Region (DISEMBL)
**********************WKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALME*********SGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK*********WLSENDLSTKTGLIFSTGC
Disordered Region (DISPRO)
**************EVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMEARRQNNNKGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	547	2.2.26 [Sep-21-2011]
Q93VV5	591	Probable peptide/nitrate	yes	no	0.957	0.886	0.766	0.0
Q56XQ6	601	Probable peptide/nitrate	no	no	0.961	0.875	0.687	0.0
Q8H157	585	Nitrate transporter 1.2 O	no	no	0.930	0.870	0.420	1e-107
Q9M390	570	Peptide transporter PTR1	no	no	0.943	0.905	0.375	1e-104
Q9LFB8	570	Peptide transporter PTR5	no	no	0.946	0.908	0.371	1e-102
Q8VYE4	567	Probable peptide/nitrate	no	no	0.954	0.920	0.404	1e-101
P46032	585	Peptide transporter PTR2	no	no	0.936	0.875	0.368	2e-98
Q93Z20	590	Probable peptide/nitrate	no	no	0.939	0.871	0.359	1e-96
Q9SZY4	577	Nitrate transporter 1.4 O	no	no	0.937	0.889	0.400	1e-96
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.932	0.870	0.365	6e-95

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/532 (76%), Positives = 469/532 (88%), Gaps = 8/532 (1%)

Query: 9   NNNKGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEM 68
           N N     EE +VDW+GRPSNPNKHGGM+AA+FVLGLQAFEIM IAAVGNNLITYVINEM
Sbjct: 18  NENNWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEM 77

Query: 69  HFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLP 128
           HF LS +ANIVTNF+GT+F+ ALLGGYLSD+FLGSFWT++IFGFVELSGFILLSVQAHLP
Sbjct: 78  HFPLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLP 137

Query: 129 QLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQ 188
           QLKPPKCN + D + CEEAKGFKA IFF+ALYLVA+GSGCVKPNMIAHGADQF QS+PKQ
Sbjct: 138 QLKPPKCNPLID-QTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQ 196

Query: 189 SKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY 248
           SK+LSSYFNAAYFAFS GEL+ALT+LVWVQTHSGMD+GFGVSAAAM +G+  +VSGT+Y+
Sbjct: 197 SKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYF 256

Query: 249 RNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPND---SGSVFLTQRFR 305
           RNKRP+ SIFTPIA V VAA+LKRK   PS+P+MLHG   ++V ND   S ++  T RFR
Sbjct: 257 RNKRPRRSIFTPIAHVIVAAILKRKLASPSDPRMLHG--DHHVANDVVPSSTLPHTPRFR 314

Query: 306 FLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQ 365
           FLDKACIK++D TN KESPWRLCTVTQVEQVK LIS+VPIFA TI+FNTILAQLQTFSVQ
Sbjct: 315 FLDKACIKIQD-TNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQ 373

Query: 366 QGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIG 425
           QGS+MN +L+ +FH+PPASLQ+IPYIML+ LVPLYD F VPFARK TGH SGI PL RIG
Sbjct: 374 QGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIG 433

Query: 426 FGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYK 485
            GLFL+TFSM+SAA++EKKRRDS++  G+ LSIF ITPQFLIFG+SEMFTAVGLIEFFYK
Sbjct: 434 IGLFLSTFSMVSAAMLEKKRRDSSVLDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYK 493

Query: 486 QSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSS-SNRGWLSENDLS 536
           QS KGM++FL A+TYCSYSFGFY SS+LVS VNK+TS+S  ++GWL ENDL+
Sbjct: 494 QSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLN 545

Arabidopsis thaliana (taxid: 3702)

>sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/537 (68%), Positives = 446/537 (83%), Gaps = 11/537 (2%)

Query: 4   EARRQNNNKGTE-VEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLIT 62
           EA+R   +   E +++  VD++GRP  P+KHGG +AA+FVLG QAFE+MAIAAVGNNLIT
Sbjct: 9   EAKRGVIHTSEESLDDLCVDFRGRPCRPSKHGGTRAALFVLGFQAFEMMAIAAVGNNLIT 68

Query: 63  YVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLS 122
           YV NEMHF LS SAN+VTNFIGTVFLL+LLGG+LSDS+LGSF TML+FG +E+SGFILLS
Sbjct: 69  YVFNEMHFPLSKSANLVTNFIGTVFLLSLLGGFLSDSYLGSFRTMLVFGVIEISGFILLS 128

Query: 123 VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFD 182
           VQAHLP+L+PP+CNM + + +C EA G+KA+  + AL LVA+GSGC+KPN+I+HGA+QF 
Sbjct: 129 VQAHLPELRPPECNMKSTTIHCVEANGYKAATLYTALCLVALGSGCLKPNIISHGANQFQ 188

Query: 183 QSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV 242
           +   K  +KLSS+FNAAYFAFS G+L+ALT+LVWVQTHSGMDVGFGVSAA MA G+  +V
Sbjct: 189 R---KDLRKLSSFFNAAYFAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAAGMISLV 245

Query: 243 SGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQ 302
           +GT +YRNK P GSIFTPIAQVFVAA+ KRKQICPSNP M+H  + + V      +  + 
Sbjct: 246 AGTSFYRNKPPSGSIFTPIAQVFVAAITKRKQICPSNPNMVHQPSTDLV--RVKPLLHSN 303

Query: 303 RFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTF 362
           +FRFLDKACIK +      ESPWRLCT+ QV QVK+L+SV+PIFACTIIFNTILAQLQTF
Sbjct: 304 KFRFLDKACIKTQG--KAMESPWRLCTIEQVHQVKILLSVIPIFACTIIFNTILAQLQTF 361

Query: 363 SVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQ 422
           SVQQGS+MN  +TK F +PPASLQ+IPYI+L+  VPLY+ FFVP ARK TG++SGISPLQ
Sbjct: 362 SVQQGSSMNTHITKTFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSGISPLQ 421

Query: 423 RIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEF 482
           RIG GLFLATFSM++AAL+EKKRR+S L+    LSIF I PQFLIFGLSEMFTAVGL+EF
Sbjct: 422 RIGTGLFLATFSMVAAALVEKKRRESFLEQNVMLSIFWIAPQFLIFGLSEMFTAVGLVEF 481

Query: 483 FYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSS---SNRGWLSENDLS 536
           FYKQS + MQ+FLTAMTYCSYSFGFYLSS+LVS VN+VTSS+   +  GWL +NDL+
Sbjct: 482 FYKQSSQSMQSFLTAMTYCSYSFGFYLSSVLVSTVNRVTSSNGSGTKEGWLGDNDLN 538

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 230/547 (42%), Positives = 331/547 (60%), Gaps = 38/547 (6%)

Query: 15  EVEEST------VDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEM 68
           EVEE         DW+ R +   +HGGM AA FVL ++  E +A  A  +NL+ Y+   M
Sbjct: 2   EVEEEVSRWEGYADWRNRAAVKGRHGGMLAASFVLVVEILENLAYLANASNLVLYLREYM 61

Query: 69  HFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLP 128
           H S S SAN VTNF+GT FLLALLGG+LSD+F  +F   LI   +E  G I+L++QA  P
Sbjct: 62  HMSPSKSANDVTNFMGTAFLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQARTP 121

Query: 129 QLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQ 188
            L PP C    DS  CEE  G KA++ F+ LYLVA+G G +K ++ +HGA+QFD+S PK 
Sbjct: 122 SLMPPSC----DSPTCEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKG 177

Query: 189 SKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY 248
            K+ S++FN   F  + G LVA+T +VW++ + G + GFGVS  A+ + +   +SG+ +Y
Sbjct: 178 RKQRSTFFNYFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFY 237

Query: 249 RNKRPQGSIFTPIAQVFVAAMLK------------RKQICPSNPQMLHGL----NQNNVP 292
           RNK P GS  T I +V +AA +K               + PSN  +  G     +Q  + 
Sbjct: 238 RNKIPCGSPLTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELE 297

Query: 293 NDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRL--CTVTQVEQVKVLISVVPIFACTI 350
                  L  R +  +   +KV +G   ++   RL  CTV QVE VK+++ ++PIFACTI
Sbjct: 298 KPRQEEALPPRAQLTNS--LKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTI 355

Query: 351 IFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARK 410
           + N  LAQL TFSVQQ ++MN K+  +  +PPASL   P + ++IL P+YD   +PFARK
Sbjct: 356 MLNCCLAQLSTFSVQQAASMNTKI-GSLKIPPASLPIFPVVFIMILAPIYDHLIIPFARK 414

Query: 411 YTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSG-----KTLSI--FSITP 463
            T  E+G++ LQRIG GL L+  +M  AAL+E KR+  A DSG     +TL +    I  
Sbjct: 415 ATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKETLPVTFLWIAL 474

Query: 464 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSS 523
           Q+L  G +++FT  GL+E+F+ ++   M++  T++++ S + G+YLSS++VS VN +T S
Sbjct: 475 QYLFLGSADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSITGS 534

Query: 524 SSNRGWL 530
           S N  WL
Sbjct: 535 SGNTPWL 541

Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  380 bits (976), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/532 (37%), Positives = 324/532 (60%), Gaps = 16/532 (3%)

Query: 12  KGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFS 71
           K    ++ TVD    P+N  K G  KA  F+LG +  E +A   +G NL+ Y+ + ++  
Sbjct: 4   KDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQG 63

Query: 72  LSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLK 131
            + +AN VTN+ GT ++  L+G +++D++LG +WT+  F F+ +SG  LL++ A +P LK
Sbjct: 64  NATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLK 123

Query: 132 PPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK 191
           P  CN  T   N  +      ++FF+ALY++A+G+G +KP + + GADQFD+++  +  K
Sbjct: 124 PGNCNADTCHPNSSQT-----AVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIK 178

Query: 192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNK 251
            SS+FN  YF+ + G L+A TVLVW+Q + G   GFGV   AM + +     G+ +YR +
Sbjct: 179 KSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQ 238

Query: 252 RPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFL--TQRFRFLDK 309
           RP GS  T I QV VAA  K     P +  +L     ++  N  GS  L  T   +F DK
Sbjct: 239 RPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFE-TADDESNIKGSRKLVHTDNLKFFDK 297

Query: 310 ACIKVEDGTNK--KESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQG 367
           A ++ +  + K  + +PWRLC+VTQVE++K +I+++P++A  I+F T+ +Q+ T  V QG
Sbjct: 298 AAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQG 357

Query: 368 SAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFG 427
           + M+  + KNF +P ASL     + ++   P+YD+F +P ARK+T +E G + LQR+G G
Sbjct: 358 NTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIG 417

Query: 428 LFLATFSMISAALMEKKRRD-----SALDSGKT-LSIFSITPQFLIFGLSEMFTAVGLIE 481
           L ++ F+MI+A ++E  R D     +A D  +  +SIF   PQ+L+ G +E+FT +G +E
Sbjct: 418 LVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLE 477

Query: 482 FFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 533
           FFY Q+   M++  +A++  + + G YLS++LV+ V K+T  +   GW+ +N
Sbjct: 478 FFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDN 529

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  374 bits (960), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/535 (37%), Positives = 320/535 (59%), Gaps = 17/535 (3%)

Query: 9   NNNKGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEM 68
            ++K    ++ T+D   +P+N NK G  KA  F+LG +  E +A   +  NLI Y+  +M
Sbjct: 2   EDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQM 61

Query: 69  HFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLP 128
           +    +++  V+N+ GT +   L+G +++D++LG +WT+  F  + ++G  LL++ A +P
Sbjct: 62  NMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVP 121

Query: 129 QLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQ 188
            L P         E C    G + +I F+ALYL+A+G+G +KP + + GADQFD ++ K+
Sbjct: 122 GLTP-----TCSGETCHATAG-QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKE 175

Query: 189 SKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY 248
            +  SS+FN  YF  + G ++A +VLVW+Q + G   G GV   AMA+ +    +G+ +Y
Sbjct: 176 KESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFY 235

Query: 249 RNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFL--TQRFRF 306
           R ++P GS  T + QV VA+  K K   P +  +L+  NQ+   +  GS  L  T+   F
Sbjct: 236 RLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYE-NQDAESSIIGSRKLEHTKILTF 294

Query: 307 LDKACIKVEDGTN--KKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSV 364
            DKA ++ E       K S W+LCTVTQVE++K LI ++PI+A  I+F ++ +Q+ T  V
Sbjct: 295 FDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFV 354

Query: 365 QQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI 424
            QG+ ++  +  NF +P ASL     + ++   P+YDK  VPFARKYTGHE G + LQRI
Sbjct: 355 LQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRI 414

Query: 425 GFGLFLATFSMISAALMEKKR----RDSALDSGKT--LSIFSITPQFLIFGLSEMFTAVG 478
           G GL ++ FSM+SA ++E  R    +   L + +T  ++IF   PQ+ + G +E+FT +G
Sbjct: 415 GIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIG 474

Query: 479 LIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 533
            +EFFY Q+   M++  +A++  + +FG YLS+ LV+ V KVT S    GW+++N
Sbjct: 475 QLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKN 529

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1

 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/537 (40%), Positives = 316/537 (58%), Gaps = 15/537 (2%)

Query: 18  ESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSAN 77
           E   DW+ + +   +HGGM AA FVL ++  E +A  A  +NL+ Y+ N MH SL+ S++
Sbjct: 13  EGYADWRNKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSS 72

Query: 78  IVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137
            VT F+ T FLLALLGG+L+D+F  +F   LI   +E  G ILL++QA  P L PP C  
Sbjct: 73  EVTTFMATAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCKS 132

Query: 138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197
            + +  CE   G KA+  F+ LYLV++G G +K ++ +HGA+QFD+  PK  K+ S++FN
Sbjct: 133 -SAALRCEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFN 191

Query: 198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSI 257
              F  S G LVA+T +VW++ + G + GFGVS  ++ L +   + G+ +Y+NK P+GS 
Sbjct: 192 YYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSP 251

Query: 258 FTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDG 317
            T I +V +AA +       S+        Q+     + S  LT     L+KA       
Sbjct: 252 LTTIFKVLLAASIVSCSSKTSSNHFTSREVQSEHEEKTPSQSLTNSLTCLNKAI------ 305

Query: 318 TNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN 377
             K    W  CTV QVE VK+++ ++PIF CTI+ N  LAQL T+SV Q + MN K+  N
Sbjct: 306 EGKTHHIWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIV-N 364

Query: 378 FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMIS 437
           F+VP ASL   P + ++IL P YD   +PFARK T  E GI+ LQRIG GL L+  +M  
Sbjct: 365 FNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAV 424

Query: 438 AALMEKKRRDSA-----LDSGKTLSI--FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG 490
           AAL+E KR+  A     LDS +TL I    I  Q+L  G +++FT  GL+EFF+ ++   
Sbjct: 425 AALVELKRKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSS 484

Query: 491 MQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC 547
           M++  T++++ S + G+YLSS++V  VN+VT S+    WL E     +  L +   C
Sbjct: 485 MRSLATSLSWASLALGYYLSSVMVPIVNRVTKSAGQSPWLGEKLNRNRLDLFYWLMC 541

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  360 bits (924), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/527 (36%), Positives = 310/527 (58%), Gaps = 15/527 (2%)

Query: 17  EESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSA 76
           E+ +VD+ G P    K G  KA  F+LG +  E +A   +  NLITY+  ++H    ++A
Sbjct: 26  EDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAA 85

Query: 77  NIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCN 136
             VT + GT +L  L+G  L+D++ G +WT+  F  +   G   L++ A +P LKP +C 
Sbjct: 86  TNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAEC- 144

Query: 137 MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196
                + C  A   + ++FF  LYL+A+G+G +KP + + GADQFD ++ ++  + +S+F
Sbjct: 145 ---IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query: 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 256
           N  YF+ + G LV+ ++LVW+Q + G  +GFG+    M L +     GT  YR ++P GS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query: 257 IFTPIAQVFVAAMLKRKQICPSNPQMLHGL-NQNNVPNDSGSVFLTQRFRFLDKACIKVE 315
             T I+QV VA+  K     P +  +L+   ++N+    S  +  T   ++LDKA +  E
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISE 321

Query: 316 DGTNKKE--SPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNK 373
           + +   +  + WRLCTVTQVE++K+LI + PI+A  IIF+ + AQ+ T  VQQG AMN K
Sbjct: 322 EESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCK 381

Query: 374 LTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATF 433
           +  +F +PPA+L +     ++I VPLYD+F VP ARK+TG + G + +QR+G GLF++  
Sbjct: 382 I-GSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query: 434 SMISAALMEKKRRDSALDSGKT-------LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQ 486
            M +AA++E  R   A D G         +S+    PQ+ I G +E+F  +G +EFFY Q
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500

Query: 487 SLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 533
           S   M++  +A+   + + G YLSSL+++ V   T+ +   GW+S+N
Sbjct: 501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDN 547

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  353 bits (907), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/520 (35%), Positives = 310/520 (59%), Gaps = 6/520 (1%)

Query: 17  EESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSA 76
           E+ ++D  G P +  K G  KA  F+LG +  E +A   +  NLITY  +E+H S  ++A
Sbjct: 37  EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96

Query: 77  NIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCN 136
           + V  + GT ++  L+G  ++DS+ G +WT+  F  +   G  LL++ A LP LKP    
Sbjct: 97  SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKP-AAC 155

Query: 137 MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196
               +  C  A   + ++FF  LYL+A+G+G +KP + + GADQFD ++P++  + +S+F
Sbjct: 156 AGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFF 215

Query: 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 256
           N  YF+ + G  ++ T+LVWVQ + G  +GF +    M + +     GT  YR ++P GS
Sbjct: 216 NWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGS 275

Query: 257 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQ-NNVPNDSGSVFLTQRFRFLDKACI--K 313
             T + QV VAA  K K   P +   L+   + N++   S  +  T  ++FLDKA +  +
Sbjct: 276 PITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISE 335

Query: 314 VEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNK 373
            E  +    +PW+LCTVTQVE+VK LI + PI+A  I+++ + +Q+ T  VQQG +M N+
Sbjct: 336 YESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSM-NR 394

Query: 374 LTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATF 433
           + ++F +PPAS      ++++I +P+YD+F VPF R++TG   G++ LQR+G GLFL+  
Sbjct: 395 IIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVL 454

Query: 434 SMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQA 493
           S+ +AA++E  R   A D    +SIF   PQ+++ G++E+F  +G +EFFY +S   M++
Sbjct: 455 SIAAAAIVETVRLQLAQDF-VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRS 513

Query: 494 FLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 533
             +A+   + + G YLSSL+++ V   T+     GW+ ++
Sbjct: 514 VCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDD 553

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  353 bits (907), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 214/534 (40%), Positives = 319/534 (59%), Gaps = 21/534 (3%)

Query: 10  NNKGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMH 69
            +KG+      VD+KGRP++ +K GG   A  +LG++  E ++   +  NL+TY++  MH
Sbjct: 2   ESKGSWTVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMH 61

Query: 70  FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQ 129
              S SANIVT+F+GT FLL LLGG+L+DSFLG F T+ IF  ++  G   L+V   LP+
Sbjct: 62  LPSSTSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPE 121

Query: 130 LKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS 189
           L+PP C+     E C  A  F+ +I +++LYL+A+G+G +K ++   G+DQFD  +PK+ 
Sbjct: 122 LRPPTCH---HGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEK 178

Query: 190 KKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYR 249
             ++ +FN  +F  S G L+A+TVLV++Q   G    +G+   +MA+ +   + GT  YR
Sbjct: 179 AHMAFFFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYR 238

Query: 250 NKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK 309
            K+ QGS    I QV  AA  KRK   P +   L+  N   +  +      T +F  LDK
Sbjct: 239 YKKSQGSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIRIEH-----TDQFHLLDK 293

Query: 310 ACIKVE-------DGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTF 362
           A I  E       DG     +PW+L +VT+VE+VK+++ ++PI+A TIIF T  AQ+ TF
Sbjct: 294 AAIVAEGDFEQTLDGV-AIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITF 352

Query: 363 SVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQ 422
           SV+Q S M   +  +F +P  SL       ++I + +YD+  +PF +K+ G + G S LQ
Sbjct: 353 SVEQASTMRRNI-GSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKG-KPGFSSLQ 410

Query: 423 RIGFGLFLATFSMISAALMEKKRRDSALDSG-KTL--SIFSITPQFLIFGLSEMFTAVGL 479
           RI  GL L+T  M +AAL+E+KR   A  S  KTL  S+F + PQF + G  E F   G 
Sbjct: 411 RIAIGLVLSTAGMAAAALVEQKRLSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQ 470

Query: 480 IEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 533
           ++FF  QS KGM+   T +   + S GF++SS LVS V +VTS+S++ GWL++N
Sbjct: 471 LDFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADN 524

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  348 bits (893), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 192/526 (36%), Positives = 311/526 (59%), Gaps = 16/526 (3%)

Query: 17  EESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSA 76
           ++ TVD +G     ++ G  KA  FV+  + FE MA   + +NL+ Y+  ++H     S+
Sbjct: 12  KDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSS 71

Query: 77  NIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCN 136
           N VTN++GT +L  +LG Y++D+  G + T +I   + L G  LL++   LP LKPPKC+
Sbjct: 72  NNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCS 131

Query: 137 MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196
              + ENCE+A   + ++FF ALY +AIG+G  KPN+   GADQFD+ +PK      S+F
Sbjct: 132 -TANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFF 190

Query: 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 256
           N   F+   G   A TVLV+VQ + G  +G+G+S   +A  +F  + GT  YR+K P GS
Sbjct: 191 NWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGS 250

Query: 257 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSG-SVFLTQRFRFLDKACIKVE 315
            FT +A+V VA++ K ++   S+    + L      +     +  T   RFL++A +K  
Sbjct: 251 PFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNRASLKT- 309

Query: 316 DGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLT 375
            G+  K   WRLCT+T+VE+ K ++ ++P+   T + + +LAQ+ T  ++QG+ ++ +LT
Sbjct: 310 -GSTHK---WRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLT 365

Query: 376 KNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSM 435
            NF +PPASL       +++ + +YD+ FV F RK TG+  GI+ LQR+G G+ L    M
Sbjct: 366 NNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIM 425

Query: 436 ISAALMEKKRRDSALDSGKT--------LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQS 487
           I A++ E+ R   A + G T        LSIF++ PQ+++ GL++ F  +  +EFFY Q+
Sbjct: 426 IIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQA 485

Query: 488 LKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 533
            + M++  T+ T  S + G+++SS+L+S V+++T     RGW+  N
Sbjct: 486 PESMKSLGTSYTSTSMAVGYFMSSILLSSVSQIT-KKQGRGWIQNN 530

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	547
224120010	613	predicted protein [Populus trichocarpa]	0.974	0.869	0.813	0.0
224129508	625	predicted protein [Populus trichocarpa]	0.972	0.851	0.815	0.0
225465269	607	PREDICTED: probable peptide/nitrate tran	0.967	0.871	0.783	0.0
356543362	612	PREDICTED: probable peptide/nitrate tran	0.936	0.836	0.795	0.0
297840607	592	proton-dependent oligopeptide transport	0.970	0.896	0.762	0.0
147832226	630	hypothetical protein VITISV_037742 [Viti	0.961	0.834	0.746	0.0
15218903	591	putative peptide/nitrate transporter [Ar	0.957	0.886	0.766	0.0
356522117	567	PREDICTED: probable peptide/nitrate tran	0.934	0.901	0.765	0.0
359493531	592	PREDICTED: probable peptide/nitrate tran	0.941	0.869	0.779	0.0
297739455	617	unnamed protein product [Vitis vinifera]	0.919	0.815	0.746	0.0

>gi|224120010|ref|XP_002331115.1| predicted protein [Populus trichocarpa] gi|222872843|gb|EEF09974.1| predicted protein [Populus trichocarpa]

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/546 (81%), Positives = 492/546 (90%), Gaps = 13/546 (2%)

Query: 3   MEARRQNNNKGTEV---EESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNN 59
           MEARR +N   ++    EE TVDW+G+PSNPNKHGGM+AA FVLGLQAFEIMAIAAVGNN
Sbjct: 1   MEARRYDNKGESKCVIGEEITVDWRGKPSNPNKHGGMRAAAFVLGLQAFEIMAIAAVGNN 60

Query: 60  LITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI 119
           LITYVINEMHF LS +AN VTNF+GT+F+LALLGGYLSDS+LG FWTMLIFGFVELSGFI
Sbjct: 61  LITYVINEMHFPLSKAANTVTNFVGTIFILALLGGYLSDSYLGCFWTMLIFGFVELSGFI 120

Query: 120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGAD 179
           LLSVQAHLPQLKPP+CNM+TD ENC EAKG K+ IFF+ALYLVA+GSGCVKPNMIAHG D
Sbjct: 121 LLSVQAHLPQLKPPQCNMLTDGENCVEAKGVKSLIFFVALYLVALGSGCVKPNMIAHGGD 180

Query: 180 QFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLF 239
           QF+QSNPKQSKKLS+YFNAAYFAFS GEL ALT+LVW+QTHSGMDVGFGVSAA MA+GL 
Sbjct: 181 QFNQSNPKQSKKLSTYFNAAYFAFSMGELFALTLLVWIQTHSGMDVGFGVSAAVMAMGLI 240

Query: 240 GVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPN------ 293
            +VSG LYYRNK PQGSIFTPIAQVFVAA+LKRKQICPSNPQMLHG +QN+V +      
Sbjct: 241 SLVSGNLYYRNKPPQGSIFTPIAQVFVAAILKRKQICPSNPQMLHG-SQNSVLDNGIVAP 299

Query: 294 --DSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII 351
             DSGS+  TQRFRFLDKACIK+EDGTN KESPWRLC+VTQVEQVK+LIS +PIFACTI+
Sbjct: 300 SADSGSLAHTQRFRFLDKACIKIEDGTNIKESPWRLCSVTQVEQVKILISAIPIFACTIV 359

Query: 352 FNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKY 411
           FNTILAQLQTFSVQQG AM+ +L K+FH+PPASLQSIPYI+L+I+VPLYD FFVP ARK 
Sbjct: 360 FNTILAQLQTFSVQQGGAMDTQLAKSFHIPPASLQSIPYIILIIVVPLYDTFFVPLARKI 419

Query: 412 TGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLS 471
           TGHESGISPLQRIG GLF ATFSM+SAA+MEKKRRD+A+DS K LSIF ITPQFLIFGLS
Sbjct: 420 TGHESGISPLQRIGAGLFFATFSMVSAAIMEKKRRDAAVDSNKILSIFWITPQFLIFGLS 479

Query: 472 EMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT-SSSSNRGWL 530
           EM TAVGLIEFFYKQSLKGMQAFLTA+TYCSYSFGFYLSSLLVS VNK+T SSSSN+GWL
Sbjct: 480 EMLTAVGLIEFFYKQSLKGMQAFLTAITYCSYSFGFYLSSLLVSLVNKITSSSSSNQGWL 539

Query: 531 SENDLS 536
           S+NDL+
Sbjct: 540 SDNDLN 545

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129508|ref|XP_002328734.1| predicted protein [Populus trichocarpa] gi|222839032|gb|EEE77383.1| predicted protein [Populus trichocarpa]

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/547 (81%), Positives = 493/547 (90%), Gaps = 15/547 (2%)

Query: 3   MEARRQNNNKGTEV----EESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGN 58
           MEARR ++ KG  V    EE TVDW+G+PSNPNKHGGM+AA FVLGLQAFEIMAIAAVGN
Sbjct: 1   MEARR-HDTKGESVCVVSEEVTVDWRGKPSNPNKHGGMRAAAFVLGLQAFEIMAIAAVGN 59

Query: 59  NLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118
           NLITYVINEMHFSLS SANIVTNF+GT+F+LALLGGYLSDS+LG FWTMLIFGFVELSGF
Sbjct: 60  NLITYVINEMHFSLSKSANIVTNFVGTIFILALLGGYLSDSYLGCFWTMLIFGFVELSGF 119

Query: 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGA 178
           ILLSVQAHLPQLKPP+CNM+T  ENC EAKGFK  IFF+ALY+VA+GSGCVKPNMIAHG 
Sbjct: 120 ILLSVQAHLPQLKPPQCNMLTGGENCIEAKGFKTLIFFVALYMVALGSGCVKPNMIAHGG 179

Query: 179 DQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGL 238
           DQF+QSNPKQSKKLS+YFNAAYFAFS GEL ALT+LVWVQT+SGMDVGFGVSAA MA+GL
Sbjct: 180 DQFNQSNPKQSKKLSTYFNAAYFAFSMGELFALTLLVWVQTNSGMDVGFGVSAAVMAMGL 239

Query: 239 FGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVP------ 292
             +VSGTLYYRNK PQGSIFTPIAQVFVAAM KRKQ CP+NPQMLHG +QN+VP      
Sbjct: 240 ISLVSGTLYYRNKAPQGSIFTPIAQVFVAAMFKRKQTCPANPQMLHG-SQNSVPSNGLVD 298

Query: 293 --NDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTI 350
             +D   +  TQRFRFLDKACIKVEDG+N+KESPWRLC+VTQVEQVK+LIS +PIFACTI
Sbjct: 299 PSSDPCRLVHTQRFRFLDKACIKVEDGSNRKESPWRLCSVTQVEQVKILISAIPIFACTI 358

Query: 351 IFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARK 410
           +FNTILAQLQTFSVQQGSAM+ +LTK+FH+PPASLQSIPYI+L+ +VPLY+ FFVPFARK
Sbjct: 359 VFNTILAQLQTFSVQQGSAMDTQLTKSFHIPPASLQSIPYIILIFVVPLYETFFVPFARK 418

Query: 411 YTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL 470
            TGHESGISPLQRIG GLF  TFSM+SAA+MEKKRRD+A+DS K LSIF ITPQFLIFGL
Sbjct: 419 ITGHESGISPLQRIGAGLFFVTFSMVSAAIMEKKRRDAAVDSNKILSIFWITPQFLIFGL 478

Query: 471 SEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSS-NRGW 529
           SEM TAVGLIEFFYKQSLKGMQAFLTA+TYCSYSFGFYLSSLLVS VNKVTSSSS N+GW
Sbjct: 479 SEMLTAVGLIEFFYKQSLKGMQAFLTAITYCSYSFGFYLSSLLVSLVNKVTSSSSTNKGW 538

Query: 530 LSENDLS 536
           LS+NDL+
Sbjct: 539 LSDNDLN 545

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465269|ref|XP_002268504.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera]

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/545 (78%), Positives = 479/545 (87%), Gaps = 16/545 (2%)

Query: 3   MEARRQNNNKGTE-----------VEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIM 51
           ME RRQ N KG E              +TVDW+GRPSNP KHGGM+AA FVLGLQAFEIM
Sbjct: 1   METRRQTN-KGEEGMGVSTGHEDTATATTVDWRGRPSNPEKHGGMRAASFVLGLQAFEIM 59

Query: 52  AIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFG 111
            IAAVGNNLITYVINEMHF LS SANIVTNFIGTVFLLALLGG +SDS+LGSFWTMLIFG
Sbjct: 60  GIAAVGNNLITYVINEMHFPLSTSANIVTNFIGTVFLLALLGGCISDSYLGSFWTMLIFG 119

Query: 112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKP 171
           FVELSGFILLSVQAHLPQLKPP+CNMVTD E C EAKGFKA IF+LALYLVA+GSGCVKP
Sbjct: 120 FVELSGFILLSVQAHLPQLKPPQCNMVTDGERCVEAKGFKAFIFYLALYLVALGSGCVKP 179

Query: 172 NMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA 231
           NM+AHGADQF++ +PKQSK LSSYFNAAYFAFS GEL+ALTVLVWVQTHSGMDVGFGVSA
Sbjct: 180 NMVAHGADQFNRDSPKQSKSLSSYFNAAYFAFSIGELIALTVLVWVQTHSGMDVGFGVSA 239

Query: 232 AAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNV 291
           AAMA+GL  +VSGTL YRNK PQGSI TPIAQVFVAA+LKRKQ CP +P MLHG +QNNV
Sbjct: 240 AAMAMGLISLVSGTLLYRNKPPQGSILTPIAQVFVAAILKRKQRCPPSPHMLHG-SQNNV 298

Query: 292 PNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII 351
               GSV  T +F+FLDKACIK++DG N KESPWRLCTV QV+QVK+L+SV+PIFACTI+
Sbjct: 299 L--VGSV-ATSKFKFLDKACIKIQDGNNVKESPWRLCTVAQVQQVKILLSVIPIFACTIV 355

Query: 352 FNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKY 411
           FNTILAQ+QTFSVQQGS+MN +LTKNFH+PPASLQ+IPYI+L+ LVPLYD FFVPFAR++
Sbjct: 356 FNTILAQMQTFSVQQGSSMNTQLTKNFHIPPASLQAIPYIILIFLVPLYDAFFVPFARRF 415

Query: 412 TGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLS 471
           TG+ SGISPLQRIGFGLF+ATFSM++AA+ME KRR++A++  K LSIF ITPQFLIFGLS
Sbjct: 416 TGNVSGISPLQRIGFGLFVATFSMVAAAIMEDKRRNAAVNEKKILSIFWITPQFLIFGLS 475

Query: 472 EMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLS 531
           EMFTAVGLIEFFYKQS  GMQAFLTA+TY SYSFGFY SS+LVS VNK+TSSSS+ GWL 
Sbjct: 476 EMFTAVGLIEFFYKQSSTGMQAFLTAITYFSYSFGFYFSSVLVSLVNKITSSSSSDGWLK 535

Query: 532 ENDLS 536
           ++DL+
Sbjct: 536 DDDLN 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543362|ref|XP_003540130.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max]

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/523 (79%), Positives = 465/523 (88%), Gaps = 11/523 (2%)

Query: 19  STVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANI 78
           +TVDW+GRPSNPN HGG +A+ FVLGLQA EIMAIAAVGNNLITYVINEMHFSLS SAN+
Sbjct: 33  NTVDWRGRPSNPNVHGGTRASAFVLGLQACEIMAIAAVGNNLITYVINEMHFSLSKSANV 92

Query: 79  VTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMV 138
           VTNF+GT+FLLALLGGYLSDS+LGSFWT+LIFGFVELSGFILLSVQAHLPQLKPP CNM 
Sbjct: 93  VTNFVGTIFLLALLGGYLSDSYLGSFWTILIFGFVELSGFILLSVQAHLPQLKPPPCNMF 152

Query: 139 TDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA 198
            D E+C EAKGFKA IFFLA+YLVA+GSGCVKPNMIAHGADQF+Q NPKQ KKLS+YFNA
Sbjct: 153 FDGEHCTEAKGFKALIFFLAIYLVALGSGCVKPNMIAHGADQFNQENPKQLKKLSTYFNA 212

Query: 199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIF 258
           AYFAFS GELVALT+LVWVQTHSGMD GFGVSAA M +GL  ++ GTLYYRNK PQGSIF
Sbjct: 213 AYFAFSVGELVALTILVWVQTHSGMDAGFGVSAAVMTMGLISLICGTLYYRNKPPQGSIF 272

Query: 259 TPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGT 318
            P+AQVFVAA+LKRKQICPSNPQMLHG +Q+NV         T +FRFLDKACI+V+ GT
Sbjct: 273 IPVAQVFVAAILKRKQICPSNPQMLHG-SQSNVARKH-----TNKFRFLDKACIRVQQGT 326

Query: 319 -----NKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNK 373
                + KESPW LC+V QVEQ K+L+SV+PIFA TI+FNTILAQLQTFSVQQGS+M+  
Sbjct: 327 GSSSNDTKESPWILCSVAQVEQAKILLSVIPIFASTIVFNTILAQLQTFSVQQGSSMDTH 386

Query: 374 LTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATF 433
           LTK+FHVPPASLQSIPYI+L+++VPLYD FFVPFARK TGHESGISPLQRIGFGLFLATF
Sbjct: 387 LTKSFHVPPASLQSIPYILLIVVVPLYDSFFVPFARKITGHESGISPLQRIGFGLFLATF 446

Query: 434 SMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQA 493
           SMISAAL+EKKRRD+A++  +T+SIF ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQ 
Sbjct: 447 SMISAALVEKKRRDAAVNLNETISIFWITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQT 506

Query: 494 FLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLS 536
           F TA+TYCSYSFGFYLSSLLVS VN ++SSSS  GWL +NDL+
Sbjct: 507 FFTAITYCSYSFGFYLSSLLVSMVNNISSSSSTGGWLHDNDLN 549

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840607|ref|XP_002888185.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297334026|gb|EFH64444.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  856 bits (2211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/539 (76%), Positives = 473/539 (87%), Gaps = 8/539 (1%)

Query: 2   EMEARRQNNNKGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLI 61
           E E      N     EE +VDW+GRPSNPNKHGGM+AA+FV+GLQAFEIM IAAVGNNLI
Sbjct: 12  EQEVVSNEMNNWELAEEESVDWRGRPSNPNKHGGMRAALFVIGLQAFEIMGIAAVGNNLI 71

Query: 62  TYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILL 121
           TYVINEMHF LS +ANIVTNF+GT+F+ ALLGGYLSD+FLGSFWT++IFGFVELSGFILL
Sbjct: 72  TYVINEMHFPLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILL 131

Query: 122 SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQF 181
           SVQAHLPQLKPPKCN + D + CEEAKGFKA IFF+ALYLVA+GSGCVKPNMIAHGADQF
Sbjct: 132 SVQAHLPQLKPPKCNPLID-QACEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQF 190

Query: 182 DQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGV 241
            QS+PKQSK+LSSYFNAAYFAFS GEL+ALT+LVWVQTHSGMDVGFGVSAAAM +GL  +
Sbjct: 191 SQSHPKQSKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDVGFGVSAAAMTMGLISL 250

Query: 242 VSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPND---SGSV 298
           VSGT+Y+RNKRP+ SIFTPIAQV VAA+LKRK + PS+P+MLHG   ++V ND   S ++
Sbjct: 251 VSGTMYFRNKRPRRSIFTPIAQVVVAAILKRKLVSPSDPRMLHG--DHHVANDVVPSSTL 308

Query: 299 FLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQ 358
             T RFRFLDKACIK++D TN KESPWRLCTVTQVEQVK LIS+VPIFA TI+FNTILAQ
Sbjct: 309 PYTPRFRFLDKACIKIQD-TNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQ 367

Query: 359 LQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGI 418
           LQTFSVQQGS+MNN+L+ +FH+PPASLQ+IPY+ML+ LVPLYD F VPFARK TGH SGI
Sbjct: 368 LQTFSVQQGSSMNNRLSNSFHIPPASLQAIPYMMLIFLVPLYDSFLVPFARKLTGHNSGI 427

Query: 419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVG 478
            PL RIG GLFL+TFSM+SAA++EKKRRDS++  G+ LSIF ITPQFLIFG+SEMFTAVG
Sbjct: 428 PPLTRIGIGLFLSTFSMVSAAMLEKKRRDSSVLDGRILSIFWITPQFLIFGVSEMFTAVG 487

Query: 479 LIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSS-SNRGWLSENDLS 536
           LIEFFYKQS KGM++FL A+TYCSYSFGFY SS+LVS VNK+TS+S  ++GWL ENDL+
Sbjct: 488 LIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLN 546

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832226|emb|CAN63859.1| hypothetical protein VITISV_037742 [Vitis vinifera]

 Score =  851 bits (2199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/571 (74%), Positives = 477/571 (83%), Gaps = 45/571 (7%)

Query: 3   MEARRQNNNKGTE-----------VEESTVDWKGRPSNPNKHGGMKAAVFVLGL------ 45
           ME RRQ N KG E              +TVDW+GRPSNP KHGGM+AA FVLGL      
Sbjct: 1   METRRQTN-KGEEGMGVSTGHEDTATATTVDWRGRPSNPEKHGGMRAASFVLGLYLSLAH 59

Query: 46  --------------------QAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGT 85
                               QAFEIM IAAVGNNLITYVINEMHF LS SANIVTNFIGT
Sbjct: 60  GFGSWVDVLVEKKWLMEVGLQAFEIMGIAAVGNNLITYVINEMHFPLSTSANIVTNFIGT 119

Query: 86  VFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCE 145
           VFLLALLGG +SDS+LGSFWTMLIFGFVELSGFILLSVQAHLPQLKPP+CNMVTD E C 
Sbjct: 120 VFLLALLGGCISDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPQCNMVTDGERCV 179

Query: 146 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFST 205
           EAKGFKA IF+LALYLVA+GSGCVKPNM+AHGADQF++ +PKQSK LSSYFNAAYFAFS 
Sbjct: 180 EAKGFKAFIFYLALYLVALGSGCVKPNMVAHGADQFNRDSPKQSKSLSSYFNAAYFAFSI 239

Query: 206 GELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVF 265
           GEL+ALTVLVWVQTHSGMDVGFGVSAAAMA+GL  +VSGTL YRNK PQGSI TPIAQVF
Sbjct: 240 GELIALTVLVWVQTHSGMDVGFGVSAAAMAMGLISLVSGTLLYRNKPPQGSILTPIAQVF 299

Query: 266 VAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPW 325
           VAA+LKRKQ C   P MLHG +QNNV    GSV  T +F+FLDKACIK++DG N KESPW
Sbjct: 300 VAAILKRKQRC---PHMLHG-SQNNVL--VGSV-ATSKFKFLDKACIKIQDGNNVKESPW 352

Query: 326 RLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASL 385
           RLCTV QV+QVK+L+SV+PIFACTI+FNTILAQ+QTFSVQQGS+MN +LTKNFH+PPASL
Sbjct: 353 RLCTVAQVQQVKILLSVIPIFACTIVFNTILAQMQTFSVQQGSSMNTQLTKNFHIPPASL 412

Query: 386 QSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKR 445
           Q+IPYI+L+ LVPLYD FFVPFAR++TG+ SGISPLQRIGFGLF+ATFSM++AA+ME KR
Sbjct: 413 QAIPYIILIFLVPLYDAFFVPFARRFTGNVSGISPLQRIGFGLFVATFSMVAAAIMEDKR 472

Query: 446 RDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSF 505
           R++A++  K LSIF ITPQFLIFGLSEMFTAVGLIEFFYKQS  GMQAFLTA+TY SYSF
Sbjct: 473 RNAAVNEKKILSIFWITPQFLIFGLSEMFTAVGLIEFFYKQSSTGMQAFLTAITYFSYSF 532

Query: 506 GFYLSSLLVSFVNKVTSSSSNRGWLSENDLS 536
           GFY SS+LVS VNK+TSSSS+ GWL ++DL+
Sbjct: 533 GFYFSSVLVSLVNKITSSSSSDGWLKDDDLN 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218903|ref|NP_176183.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75305727|sp|Q93VV5.1|PTR16_ARATH RecName: Full=Probable peptide/nitrate transporter At1g59740 gi|14334728|gb|AAK59542.1| putative oligopeptide transporter protein [Arabidopsis thaliana] gi|15293215|gb|AAK93718.1| putative oligopeptide transporter protein [Arabidopsis thaliana] gi|332195490|gb|AEE33611.1| putative peptide/nitrate transporter [Arabidopsis thaliana]

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/532 (76%), Positives = 469/532 (88%), Gaps = 8/532 (1%)

Query: 9   NNNKGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEM 68
           N N     EE +VDW+GRPSNPNKHGGM+AA+FVLGLQAFEIM IAAVGNNLITYVINEM
Sbjct: 18  NENNWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEM 77

Query: 69  HFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLP 128
           HF LS +ANIVTNF+GT+F+ ALLGGYLSD+FLGSFWT++IFGFVELSGFILLSVQAHLP
Sbjct: 78  HFPLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLP 137

Query: 129 QLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQ 188
           QLKPPKCN + D + CEEAKGFKA IFF+ALYLVA+GSGCVKPNMIAHGADQF QS+PKQ
Sbjct: 138 QLKPPKCNPLID-QTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQ 196

Query: 189 SKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY 248
           SK+LSSYFNAAYFAFS GEL+ALT+LVWVQTHSGMD+GFGVSAAAM +G+  +VSGT+Y+
Sbjct: 197 SKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYF 256

Query: 249 RNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPND---SGSVFLTQRFR 305
           RNKRP+ SIFTPIA V VAA+LKRK   PS+P+MLHG   ++V ND   S ++  T RFR
Sbjct: 257 RNKRPRRSIFTPIAHVIVAAILKRKLASPSDPRMLHG--DHHVANDVVPSSTLPHTPRFR 314

Query: 306 FLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQ 365
           FLDKACIK++D TN KESPWRLCTVTQVEQVK LIS+VPIFA TI+FNTILAQLQTFSVQ
Sbjct: 315 FLDKACIKIQD-TNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQ 373

Query: 366 QGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIG 425
           QGS+MN +L+ +FH+PPASLQ+IPYIML+ LVPLYD F VPFARK TGH SGI PL RIG
Sbjct: 374 QGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIG 433

Query: 426 FGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYK 485
            GLFL+TFSM+SAA++EKKRRDS++  G+ LSIF ITPQFLIFG+SEMFTAVGLIEFFYK
Sbjct: 434 IGLFLSTFSMVSAAMLEKKRRDSSVLDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYK 493

Query: 486 QSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSS-SNRGWLSENDLS 536
           QS KGM++FL A+TYCSYSFGFY SS+LVS VNK+TS+S  ++GWL ENDL+
Sbjct: 494 QSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLN 545

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522117|ref|XP_003529696.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max]

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/521 (76%), Positives = 453/521 (86%), Gaps = 10/521 (1%)

Query: 17  EESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSA 76
           E    DW+GRPSNP KHGGM  A FVLGLQAFEIMAIAAVGNNLITYV +EMHF LS +A
Sbjct: 7   EAQAQDWRGRPSNPAKHGGMIPAAFVLGLQAFEIMAIAAVGNNLITYVTSEMHFPLSKAA 66

Query: 77  NIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCN 136
           N+VTNF+GT+FLLALLGGYLSDS+LGSFWTMLIFGFVELSGFILLSVQAH+PQLKPP CN
Sbjct: 67  NLVTNFVGTIFLLALLGGYLSDSYLGSFWTMLIFGFVELSGFILLSVQAHVPQLKPPPCN 126

Query: 137 MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196
           +    E C EAKG KA IFF+ALYLVA+GSGCVKPNM+A+G DQFDQ NPKQ KKLS+YF
Sbjct: 127 INDLGEQCSEAKGMKAMIFFVALYLVALGSGCVKPNMVAYGGDQFDQDNPKQLKKLSTYF 186

Query: 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 256
           NAAYFAFS GELV+LT+LVWVQTHSGMDVGFGVSAA MA+GL  ++ GTLYYRNK PQGS
Sbjct: 187 NAAYFAFSLGELVSLTILVWVQTHSGMDVGFGVSAAVMAMGLISLICGTLYYRNKPPQGS 246

Query: 257 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVED 316
           I TPIAQV VAA+ KR  + PSNPQMLHG  QNN+ +       T +FRFLDKACI+VE 
Sbjct: 247 ILTPIAQVLVAAIFKRNLLLPSNPQMLHG-TQNNLIH-------TDKFRFLDKACIRVEQ 298

Query: 317 GTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTK 376
             N +ES WRLC+V QVEQVK+L+SV+PIF+CTI+FNTILAQLQTFSVQQG AM+  LTK
Sbjct: 299 EGN-QESAWRLCSVAQVEQVKILLSVIPIFSCTIVFNTILAQLQTFSVQQGRAMDTHLTK 357

Query: 377 NFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMI 436
           +F++PPASLQSIPYI+L++LVPLYD FFVPFARK+TGHESGI PL+RIGFGLFLATFSM+
Sbjct: 358 SFNIPPASLQSIPYILLIVLVPLYDTFFVPFARKFTGHESGIPPLRRIGFGLFLATFSMV 417

Query: 437 SAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLT 496
           +AAL+EKKRRD A++  K LSIF ITPQ+LIFGLSEMFTA+GL+EFFYKQSLKGMQAFLT
Sbjct: 418 AAALLEKKRRDEAVNHDKVLSIFWITPQYLIFGLSEMFTAIGLLEFFYKQSLKGMQAFLT 477

Query: 497 AMTYCSYSFGFYLSSLLVSFVNKVTS-SSSNRGWLSENDLS 536
           A+TYCSYSFGFYLS+LLVS VNK+TS SSS  GWL  N+L+
Sbjct: 478 AITYCSYSFGFYLSTLLVSLVNKITSTSSSAAGWLHNNNLN 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493531|ref|XP_002265350.2| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/527 (77%), Positives = 461/527 (87%), Gaps = 12/527 (2%)

Query: 18  ESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSAN 77
           +++VDW+GRP   NKHGGM AA+FVLGLQAFE+MAIAAVGNNLITYV N+MHF LS SAN
Sbjct: 4   KTSVDWRGRPCKANKHGGMTAAIFVLGLQAFEMMAIAAVGNNLITYVFNDMHFPLSKSAN 63

Query: 78  IVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137
           IVTNFIGTVFLL+LLGG+LSDS+LGSFWTMLIFGFVELSGFILLSVQAHLPQL+P  C M
Sbjct: 64  IVTNFIGTVFLLSLLGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPAHCTM 123

Query: 138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197
           V D +NC EAKG+KA IFFLALYLVA+GSGC+KPN+I+HGADQF + + KQSKKLSSYFN
Sbjct: 124 VLDEDNCSEAKGYKALIFFLALYLVALGSGCLKPNIISHGADQFRKEDSKQSKKLSSYFN 183

Query: 198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSI 257
           AAYFAF  GELVALTVLVWVQTHSGMDVGFGVSAAAMA+GL  ++SGTL Y NK P+GSI
Sbjct: 184 AAYFAFCMGELVALTVLVWVQTHSGMDVGFGVSAAAMAMGLISLISGTLVYMNKPPRGSI 243

Query: 258 FTPIAQVFVAAMLKRKQICPSNPQMLHG-------LNQNNVPNDSGSVFLTQRFRFLDKA 310
           FTPIAQVFVAA+ KRKQICPSN  MLHG       L  +NV N    +  T++FRFLDKA
Sbjct: 244 FTPIAQVFVAAITKRKQICPSNSGMLHGSQLPEQALASSNVRN----LLHTEKFRFLDKA 299

Query: 311 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAM 370
           CIKV+DGT   ESPWRLCTVTQVEQVK++ISVVPIFACTIIFNTILAQLQTFSVQQGSAM
Sbjct: 300 CIKVQDGTQTSESPWRLCTVTQVEQVKIIISVVPIFACTIIFNTILAQLQTFSVQQGSAM 359

Query: 371 NNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFL 430
           N +L K F +PPASLQSIPY+ML+ LVPLY+  FVP ARK TG +SGISPLQRIG GLF+
Sbjct: 360 NTRLIKGFQIPPASLQSIPYLMLIFLVPLYETVFVPIARKITGRDSGISPLQRIGIGLFV 419

Query: 431 ATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG 490
           AT SM+SAAL+EKKRR SALDS + LSIF I PQFLIFGLSEMFTAVGLIEFFYKQS++G
Sbjct: 420 ATLSMVSAALVEKKRRTSALDSNRILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSVEG 479

Query: 491 MQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSS-SSNRGWLSENDLS 536
           MQ+FLTAMTYCSYSFGF+LSSLLVS VN++TSS SS+RGWL +NDL+
Sbjct: 480 MQSFLTAMTYCSYSFGFFLSSLLVSLVNRITSSHSSSRGWLGDNDLN 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739455|emb|CBI29637.3| unnamed protein product [Vitis vinifera]

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/545 (74%), Positives = 453/545 (83%), Gaps = 42/545 (7%)

Query: 3   MEARRQNNNKGTE-----------VEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIM 51
           ME RRQ N KG E              +TVDW+GRPSNP KHGGM+AA FVLGLQAFEIM
Sbjct: 1   METRRQTN-KGEEGMGVSTGHEDTATATTVDWRGRPSNPEKHGGMRAASFVLGLQAFEIM 59

Query: 52  AIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFG 111
            IAAVGNNLITYVINEMHF LS SANIVTNFIGTVFLLALLGG +SDS+LGSFWTMLIFG
Sbjct: 60  GIAAVGNNLITYVINEMHFPLSTSANIVTNFIGTVFLLALLGGCISDSYLGSFWTMLIFG 119

Query: 112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKP 171
           FVELSGFILLSVQAHLPQLKPP+CNMVTD E C EAKGFKA IF+LALYLVA+GSGCVKP
Sbjct: 120 FVELSGFILLSVQAHLPQLKPPQCNMVTDGERCVEAKGFKAFIFYLALYLVALGSGCVKP 179

Query: 172 NMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA 231
           NM+AHGADQF++ +PKQSK LSSYFNAAYFAFS GEL+ALTVLVWVQTHSGMDVGFGVSA
Sbjct: 180 NMVAHGADQFNRDSPKQSKSLSSYFNAAYFAFSIGELIALTVLVWVQTHSGMDVGFGVSA 239

Query: 232 AAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNV 291
           AAMA+GL  +VSGTL YRNK PQGSI TPIAQVFVAA+LKRKQ CP +P MLHG +QNNV
Sbjct: 240 AAMAMGLISLVSGTLLYRNKPPQGSILTPIAQVFVAAILKRKQRCPPSPHMLHG-SQNNV 298

Query: 292 PNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII 351
              S +     ++RFLDKACIK++DG N KESPWRLCTV QV+QVK+L+SV+PIFACTI+
Sbjct: 299 LVGSVATSKFNKYRFLDKACIKIQDGNNVKESPWRLCTVAQVQQVKILLSVIPIFACTIV 358

Query: 352 FNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKY 411
           FNTILAQ+QTFSVQQGS+MN +LTKNFH+PPASLQ+IPYI+L+ LVPLYD FFVPFAR++
Sbjct: 359 FNTILAQMQTFSVQQGSSMNTQLTKNFHIPPASLQAIPYIILIFLVPLYDAFFVPFARRF 418

Query: 412 TGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLS 471
           TG+ SGISPLQRIGFGLF+ATFSM                             FLIFGLS
Sbjct: 419 TGNVSGISPLQRIGFGLFVATFSM-----------------------------FLIFGLS 449

Query: 472 EMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLS 531
           EMFTAVGLIEFFYKQS  GMQAFLTA+TY SYSFGFY SS+LVS VNK+TSSSS+ GWL 
Sbjct: 450 EMFTAVGLIEFFYKQSSTGMQAFLTAITYFSYSFGFYFSSVLVSLVNKITSSSSSDGWLK 509

Query: 532 ENDLS 536
           ++DL+
Sbjct: 510 DDDLN 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	547
TAIR|locus:2025886	591	AT1G59740 [Arabidopsis thalian	0.957	0.886	0.740	3e-211
TAIR|locus:2006907	601	AT1G33440 [Arabidopsis thalian	0.961	0.875	0.659	1.3e-185
TAIR|locus:2205769	567	AT1G27040 [Arabidopsis thalian	0.948	0.915	0.396	3.3e-95
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.943	0.905	0.360	1.3e-93
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.936	0.887	0.386	1e-91
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.943	0.905	0.364	7.3e-91
TAIR|locus:2196739	585	NRT1:2 "AT1G69850" [Arabidopsi	0.855	0.8	0.416	5.1e-90
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.943	0.874	0.353	5.9e-89
TAIR|locus:2089935	590	AT3G21670 [Arabidopsis thalian	0.921	0.854	0.363	4.1e-88
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.930	0.862	0.362	6.7e-88

TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)]

 Score = 2042 (723.9 bits), Expect = 3.0e-211, P = 3.0e-211
 Identities = 394/532 (74%), Positives = 454/532 (85%)

Query:     9 NNNKGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEM 68
             N N     EE +VDW+GRPSNPNKHGGM+AA+FVLGLQAFEIM IAAVGNNLITYVINEM
Sbjct:    18 NENNWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEM 77

Query:    69 HFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLP 128
             HF LS +ANIVTNF+GT+F+ ALLGGYLSD+FLGSFWT++IFGFVELSGFILLSVQAHLP
Sbjct:    78 HFPLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLP 137

Query:   129 QLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQ 188
             QLKPPKCN + D + CEEAKGFKA IFF+ALYLVA+GSGCVKPNMIAHGADQF QS+PKQ
Sbjct:   138 QLKPPKCNPLID-QTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQ 196

Query:   189 SKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY 248
             SK+LSSYFNAAYFAFS GEL+ALT+LVWVQTHSGMD+GFGVSAAAM +G+  +VSGT+Y+
Sbjct:   197 SKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYF 256

Query:   249 RNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPND---SGSVFLTQRFR 305
             RNKRP+ SIFTPIA V VAA+LKRK   PS+P+MLHG   ++V ND   S ++  T RFR
Sbjct:   257 RNKRPRRSIFTPIAHVIVAAILKRKLASPSDPRMLHG--DHHVANDVVPSSTLPHTPRFR 314

Query:   306 FLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQ 365
             FLDKACIK++D TN KESPWRLCTVTQVEQVK LIS+VPIFA TI+FNTILAQLQTFSVQ
Sbjct:   315 FLDKACIKIQD-TNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQ 373

Query:   366 QGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIG 425
             QGS+MN +L+ +FH+PPASLQ+IPYIML+ LVPLYD F VPFARK TGH SGI PL RIG
Sbjct:   374 QGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIG 433

Query:   426 FGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYK 485
              GLFL+TFSM+SAA++EKKRRDS++  G+ LSIF ITPQFLIFG+SEMFTAVGLIEFFYK
Sbjct:   434 IGLFLSTFSMVSAAMLEKKRRDSSVLDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYK 493

Query:   486 QSLKGMQAFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSS-SNRGWLSENDLS 536
             QS KGM++FL A+T                 VNK+TS+S  ++GWL ENDL+
Sbjct:   494 QSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLN 545

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2006907 AT1G33440 [Arabidopsis thaliana (taxid:3702)]

 Score = 1800 (638.7 bits), Expect = 1.3e-185, P = 1.3e-185
 Identities = 354/537 (65%), Positives = 430/537 (80%)

Query:     4 EARRQNNNKGTE-VEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLIT 62
             EA+R   +   E +++  VD++GRP  P+KHGG +AA+FVLG QAFE+MAIAAVGNNLIT
Sbjct:     9 EAKRGVIHTSEESLDDLCVDFRGRPCRPSKHGGTRAALFVLGFQAFEMMAIAAVGNNLIT 68

Query:    63 YVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLS 122
             YV NEMHF LS SAN+VTNFIGTVFLL+LLGG+LSDS+LGSF TML+FG +E+SGFILLS
Sbjct:    69 YVFNEMHFPLSKSANLVTNFIGTVFLLSLLGGFLSDSYLGSFRTMLVFGVIEISGFILLS 128

Query:   123 VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFD 182
             VQAHLP+L+PP+CNM + + +C EA G+KA+  + AL LVA+GSGC+KPN+I+HGA+QF 
Sbjct:   129 VQAHLPELRPPECNMKSTTIHCVEANGYKAATLYTALCLVALGSGCLKPNIISHGANQFQ 188

Query:   183 QSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV 242
             +   K  +KLSS+FNAAYFAFS G+L+ALT+LVWVQTHSGMDVGFGVSAA MA G+  +V
Sbjct:   189 R---KDLRKLSSFFNAAYFAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAAGMISLV 245

Query:   243 SGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQ 302
             +GT +YRNK P GSIFTPIAQVFVAA+ KRKQICPSNP M+H  + + V      +  + 
Sbjct:   246 AGTSFYRNKPPSGSIFTPIAQVFVAAITKRKQICPSNPNMVHQPSTDLVRVKP--LLHSN 303

Query:   303 RFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTF 362
             +FRFLDKACIK +      ESPWRLCT+ QV QVK+L+SV+PIFACTIIFNTILAQLQTF
Sbjct:   304 KFRFLDKACIKTQG--KAMESPWRLCTIEQVHQVKILLSVIPIFACTIIFNTILAQLQTF 361

Query:   363 SVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQ 422
             SVQQGS+MN  +TK F +PPASLQ+IPYI+L+  VPLY+ FFVP ARK TG++SGISPLQ
Sbjct:   362 SVQQGSSMNTHITKTFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSGISPLQ 421

Query:   423 RIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEF 482
             RIG GLFLATFSM++AAL+EKKRR+S L+    LSIF I PQFLIFGLSEMFTAVGL+EF
Sbjct:   422 RIGTGLFLATFSMVAAALVEKKRRESFLEQNVMLSIFWIAPQFLIFGLSEMFTAVGLVEF 481

Query:   483 FYKQSLKGMQAFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSN---RGWLSENDLS 536
             FYKQS + MQ+FLTAMT                 VN+VTSS+ +    GWL +NDL+
Sbjct:   482 FYKQSSQSMQSFLTAMTYCSYSFGFYLSSVLVSTVNRVTSSNGSGTKEGWLGDNDLN 538

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)]

 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 214/540 (39%), Positives = 309/540 (57%)

Query:    18 ESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSAN 77
             E   DW+ + +   +HGGM AA FVL ++  E +A  A  +NL+ Y+ N MH SL+ S++
Sbjct:    13 EGYADWRNKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSS 72

Query:    78 IVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137
              VT F+ T FLLALLGG+L+D+F  +F   LI   +E  G ILL++QA  P L PP C  
Sbjct:    73 EVTTFMATAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCKS 132

Query:   138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197
              + +  CE   G KA+  F+ LYLV++G G +K ++ +HGA+QFD+  PK  K+ S++FN
Sbjct:   133 -SAALRCEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFN 191

Query:   198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSI 257
                F  S G LVA+T +VW++ + G + GFGVS  ++ L +   + G+ +Y+NK P+GS 
Sbjct:   192 YYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSP 251

Query:   258 FTPIAQVFVAAMLKRKQICPSNPQMLHGLN---QNNVPNDSGSVFLTQRFRFLDKACIKV 314
              T I +V +AA +     C S     H  +   Q+     + S  LT     L+KA   +
Sbjct:   252 LTTIFKVLLAASIVS---CSSKTSSNHFTSREVQSEHEEKTPSQSLTNSLTCLNKA---I 305

Query:   315 EDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKL 374
             E    K    W  CTV QVE VK+++ ++PIF CTI+ N  LAQL T+SV Q + MN K+
Sbjct:   306 E---GKTHHIWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKI 362

Query:   375 TKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS 434
               NF+VP ASL   P + ++IL P YD   +PFARK T  E GI+ LQRIG GL L+  +
Sbjct:   363 V-NFNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVA 421

Query:   435 MISAALMEKKRRDSA-----LDSGKTLSI-FS-ITPQFLIFGLSEMFTAVGLIEFFYKQS 487
             M  AAL+E KR+  A     LDS +TL I F  I  Q+L  G +++FT  GL+EFF+ ++
Sbjct:   422 MAVAALVELKRKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEA 481

Query:   488 LKGMQAFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC 547
                M++  T+++                 VN+VT S+    WL E     +  L +   C
Sbjct:   482 PSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKSAGQSPWLGEKLNRNRLDLFYWLMC 541

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 192/532 (36%), Positives = 314/532 (59%)

Query:    12 KGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFS 71
             K    ++ TVD    P+N  K G  KA  F+LG +  E +A   +G NL+ Y+ + ++  
Sbjct:     4 KDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQG 63

Query:    72 LSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLK 131
              + +AN VTN+ GT ++  L+G +++D++LG +WT+  F F+ +SG  LL++ A +P LK
Sbjct:    64 NATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLK 123

Query:   132 PPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK 191
             P  CN  T   N  +      ++FF+ALY++A+G+G +KP + + GADQFD+++  +  K
Sbjct:   124 PGNCNADTCHPNSSQT-----AVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIK 178

Query:   192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNK 251
              SS+FN  YF+ + G L+A TVLVW+Q + G   GFGV   AM + +     G+ +YR +
Sbjct:   179 KSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQ 238

Query:   252 RPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGL--NQNNVPNDSGSVFLTQRFRFLDK 309
             RP GS  T I QV VAA  K     P +  +L     +++N+   S  +  T   +F DK
Sbjct:   239 RPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKG-SRKLVHTDNLKFFDK 297

Query:   310 ACIKVEDGTNK--KESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQG 367
             A ++ +  + K  + +PWRLC+VTQVE++K +I+++P++A  I+F T+ +Q+ T  V QG
Sbjct:   298 AAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQG 357

Query:   368 SAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFG 427
             + M+  + KNF +P ASL     + ++   P+YD+F +P ARK+T +E G + LQR+G G
Sbjct:   358 NTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIG 417

Query:   428 LFLATFSMISAALMEKKRRD-----SALDSGKT-LSIFSITPQFLIFGLSEMFTAVGLIE 481
             L ++ F+MI+A ++E  R D     +A D  +  +SIF   PQ+L+ G +E+FT +G +E
Sbjct:   418 LVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLE 477

Query:   482 FFYKQSLKGMQAFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSEN 533
             FFY Q+   M++  +A++                 V K+T  +   GW+ +N
Sbjct:   478 FFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDN 529

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 206/533 (38%), Positives = 308/533 (57%)

Query:    11 NKGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHF 70
             +KG+      VD+KGRP++ +K GG   A  +LG++  E ++   +  NL+TY++  MH 
Sbjct:     3 SKGSWTVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHL 62

Query:    71 SLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQL 130
               S SANIVT+F+GT FLL LLGG+L+DSFLG F T+ IF  ++  G   L+V   LP+L
Sbjct:    63 PSSTSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPEL 122

Query:   131 KPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190
             +PP C+     E C  A  F+ +I +++LYL+A+G+G +K ++   G+DQFD  +PK+  
Sbjct:   123 RPPTCH---HGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKA 179

Query:   191 KLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRN 250
              ++ +FN  +F  S G L+A+TVLV++Q   G    +G+   +MA+ +   + GT  YR 
Sbjct:   180 HMAFFFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRY 239

Query:   251 KRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA 310
             K+ QGS    I QV  AA  KRK   P +   L+  N   +  +      T +F  LDKA
Sbjct:   240 KKSQGSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIRIEH-----TDQFHLLDKA 294

Query:   311 CIKVE-------DGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFS 363
              I  E       DG     +PW+L +VT+VE+VK+++ ++PI+A TIIF T  AQ+ TFS
Sbjct:   295 AIVAEGDFEQTLDGV-AIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFS 353

Query:   364 VQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQR 423
             V+Q S M   +  +F +P  SL       ++I + +YD+  +PF +K+ G + G S LQR
Sbjct:   354 VEQASTMRRNIG-SFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKG-KPGFSSLQR 411

Query:   424 IGFGLFLATFSMISAALMEKKRRDSALDSG-KTL--SIFSITPQFLIFGLSEMFTAVGLI 480
             I  GL L+T  M +AAL+E+KR   A  S  KTL  S+F + PQF + G  E F   G +
Sbjct:   412 IAIGLVLSTAGMAAAALVEQKRLSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQL 471

Query:   481 EFFYKQSLKGMQAFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSEN 533
             +FF  QS KGM+   T +                  V +VTS+S++ GWL++N
Sbjct:   472 DFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADN 524

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
 Identities = 195/535 (36%), Positives = 313/535 (58%)

Query:    10 NNKGTEVEESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMH 69
             ++K    ++ T+D   +P+N NK G  KA  F+LG +  E +A   +  NLI Y+  +M+
Sbjct:     3 DDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMN 62

Query:    70 FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQ 129
                 +++  V+N+ GT +   L+G +++D++LG +WT+  F  + ++G  LL++ A +P 
Sbjct:    63 MENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPG 122

Query:   130 LKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS 189
             L P  C+     E C    G + +I F+ALYL+A+G+G +KP + + GADQFD ++ K+ 
Sbjct:   123 LTPT-CS----GETCHATAG-QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176

Query:   190 KKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYR 249
             +  SS+FN  YF  + G ++A +VLVW+Q + G   G GV   AMA+ +    +G+ +YR
Sbjct:   177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236

Query:   250 NKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFL--TQRFRFL 307
              ++P GS  T + QV VA+  K K   P +  +L+  NQ+   +  GS  L  T+   F 
Sbjct:   237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYE-NQDAESSIIGSRKLEHTKILTFF 295

Query:   308 DKACIKVEDGTNK---KESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSV 364
             DKA ++ E   NK   K S W+LCTVTQVE++K LI ++PI+A  I+F ++ +Q+ T  V
Sbjct:   296 DKAAVETESD-NKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFV 354

Query:   365 QQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI 424
              QG+ ++  +  NF +P ASL     + ++   P+YDK  VPFARKYTGHE G + LQRI
Sbjct:   355 LQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRI 414

Query:   425 GFGLFLATFSMISAALMEKKRRDSA----LDSGKTL--SIFSITPQFLIFGLSEMFTAVG 478
             G GL ++ FSM+SA ++E  R +      L + +T+  +IF   PQ+ + G +E+FT +G
Sbjct:   415 GIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIG 474

Query:   479 LIEFFYKQSLKGMQAFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSEN 533
              +EFFY Q+   M++  +A++                 V KVT S    GW+++N
Sbjct:   475 QLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKN 529

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)]

 Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
 Identities = 207/497 (41%), Positives = 293/497 (58%)

Query:    18 ESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSAN 77
             E   DW+ R +   +HGGM AA FVL ++  E +A  A  +NL+ Y+   MH S S SAN
Sbjct:    11 EGYADWRNRAAVKGRHGGMLAASFVLVVEILENLAYLANASNLVLYLREYMHMSPSKSAN 70

Query:    78 IVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137
              VTNF+GT FLLALLGG+LSD+F  +F   LI   +E  G I+L++QA  P L PP C  
Sbjct:    71 DVTNFMGTAFLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQARTPSLMPPSC-- 128

Query:   138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197
               DS  CEE  G KA++ F+ LYLVA+G G +K ++ +HGA+QFD+S PK  K+ S++FN
Sbjct:   129 --DSPTCEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFN 186

Query:   198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSI 257
                F  + G LVA+T +VW++ + G + GFGVS  A+ + +   +SG+ +YRNK P GS 
Sbjct:   187 YFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSP 246

Query:   258 FTPIAQVFVAAMLK------------RKQICPSNPQMLHGL----NQNNVPNDSGSVFLT 301
              T I +V +AA +K               + PSN  +  G     +Q  +        L 
Sbjct:   247 LTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQEEALP 306

Query:   302 QRFRFLDKACIKVEDGTNKKESPWRL--CTVTQVEQVKVLISVVPIFACTIIFNTILAQL 359
              R +  +   +KV +G   ++   RL  CTV QVE VK+++ ++PIFACTI+ N  LAQL
Sbjct:   307 PRAQLTNS--LKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCLAQL 364

Query:   360 QTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGIS 419
              TFSVQQ ++MN K+  +  +PPASL   P + ++IL P+YD   +PFARK T  E+G++
Sbjct:   365 STFSVQQAASMNTKIG-SLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETGVT 423

Query:   420 PLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGL 479
              LQRIG GL L+  +M  AAL+E KR+  A DSG   S  ++   FL   L  +F  +G 
Sbjct:   424 HLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQYLF--LGS 481

Query:   480 IEFFYKQSLKGMQAFLT 496
              + F    L  ++ F T
Sbjct:   482 ADLFTLAGL--LEYFFT 496

GO:0005215 "transporter activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0090440 "abscisic acid transporter activity" evidence=IDA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 185/523 (35%), Positives = 303/523 (57%)

Query:    17 EESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSA 76
             E+ ++D  G P +  K G  KA  F+LG +  E +A   +  NLITY  +E+H S  ++A
Sbjct:    37 EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96

Query:    77 NIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCN 136
             + V  + GT ++  L+G  ++DS+ G +WT+  F  +   G  LL++ A LP LKP  C 
Sbjct:    97 SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156

Query:   137 MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196
              V  +  C  A   + ++FF  LYL+A+G+G +KP + + GADQFD ++P++  + +S+F
Sbjct:   157 GVA-AALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFF 215

Query:   197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 256
             N  YF+ + G  ++ T+LVWVQ + G  +GF +    M + +     GT  YR ++P GS
Sbjct:   216 NWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGS 275

Query:   257 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQ-NNVPNDSGSVFLTQRFRFLDKACI--K 313
               T + QV VAA  K K   P +   L+   + N++   S  +  T  ++FLDKA +  +
Sbjct:   276 PITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISE 335

Query:   314 VEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNK 373
              E  +    +PW+LCTVTQVE+VK LI + PI+A  I+++ + +Q+ T  VQQG +MN +
Sbjct:   336 YESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMN-R 394

Query:   374 LTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATF 433
             + ++F +PPAS      ++++I +P+YD+F VPF R++TG   G++ LQR+G GLFL+  
Sbjct:   395 IIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVL 454

Query:   434 SMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQA 493
             S+ +AA++E  R   A D    +SIF   PQ+++ G++E+F  +G +EFFY +S   M++
Sbjct:   455 SIAAAAIVETVRLQLAQDF-VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRS 513

Query:   494 FLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSENDLS 536
               +A+                  V   T+     GW+ + DL+
Sbjct:   514 VCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPD-DLN 555

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2089935 AT3G21670 [Arabidopsis thaliana (taxid:3702)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 190/522 (36%), Positives = 304/522 (58%)

Query:    18 ESTVDWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSAN 77
             E   D++G P + +K GG   A  +LG +  E + +  +  NL+TY++ ++H S + SA 
Sbjct:    15 EEAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDLHISSAKSAT 74

Query:    78 IVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137
             IVTNF+GT+ LL LLGG+L+D+ LG +  + I   V   G +LL+V   +  ++PP C+ 
Sbjct:    75 IVTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTVATTISSMRPPICDD 134

Query:   138 VTDSEN-CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196
                  + C EA G + ++ ++ALY +A+G G +K N+   G+DQFD S+PK+ K++  +F
Sbjct:   135 FRRLHHQCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFFF 194

Query:   197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 256
             N  YF+ S G L A+  LV+VQ + G   G+G+SAA M +    ++ GT  YR K+P+GS
Sbjct:   195 NRFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKGS 254

Query:   257 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACI-KVE 315
              FT I +V   A  KRK+  P++P +L+G +   VP+       T+  + LDKA I K E
Sbjct:   255 PFTTIWRVGFLAWKKRKESYPAHPSLLNGYDNTTVPH-------TEMLKCLDKAAISKNE 307

Query:   316 DGTNKKE----SPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMN 371
                + K+     PW + TVTQVE+VK+++ +VPI+A  I+F TI +Q+ TF+V+Q + M+
Sbjct:   308 SSPSSKDFEEKDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMD 367

Query:   372 NKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA 431
              KL  +F VP  S  +   + +++   L ++ FVP  R+ T    GI+ LQRIG GL  +
Sbjct:   368 RKLG-SFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFS 426

Query:   432 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM 491
               +M  AA++E  RR++A+++ K +S F + PQ+ + G  E F  VG +EFF +++ + M
Sbjct:   427 MAAMAVAAVIENARREAAVNNDKKISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAPERM 486

Query:   492 QAFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSEN 533
             ++  T +                  V++VT  S    WL  N
Sbjct:   487 KSMSTGLFLSTISMGFFVSSLLVSLVDRVTDKS----WLRSN 524

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 191/527 (36%), Positives = 309/527 (58%)

Query:    22 DWKGRPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTN 81
             D++GRP++ +K GG  +A  +L ++A E +    +G NL+TY+   MH   + +AN VTN
Sbjct:    17 DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTN 76

Query:    82 FIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDS 141
             F+GT F+L LLGG+++D+FLG + T+ IF  ++ +G  +L++   +P L+PP+CN  T S
Sbjct:    77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSS 136

Query:   142 ENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF 201
              +CE+A G + ++ +LALYL A+G+G VK ++   G+DQFD++ PK+  K++ +FN  +F
Sbjct:   137 -HCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFF 195

Query:   202 AFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPI 261
               + G L+A+TVLV+VQ   G   G+G+ A A+ L L   ++GT  YR K+  GS  T +
Sbjct:   196 CINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQV 255

Query:   262 AQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDS--GSVFL--TQRFRFLDKACIKVEDG 317
             A V VAA   RK   P++P  L+ ++       S  G   L  T++FR LDKA I+ ++ 
Sbjct:   256 AAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQEA 315

Query:   318 --TNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLT 375
               T+   + W L T+T VE+VK ++ ++PI+A  I+F T+ AQL T SV Q   ++  + 
Sbjct:   316 GVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIG 375

Query:   376 KNFHVPPASLQSIPYIM-LVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS 434
              +F +PPAS+ ++ Y+  L++   +YD+  +   +K   +  G+ PLQRIG GLF  + +
Sbjct:   376 -SFEIPPASM-AVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMA 433

Query:   435 MISAALMEKKRRDSALDSGKT-----LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK 489
             M  AAL+E KR  +A   G T     L  + + PQ+LI G+ E     G ++FF ++  K
Sbjct:   434 MAVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPK 493

Query:   490 GMQAFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSENDLS 536
             GM+   T +                  V K T  +    W+++ DL+
Sbjct:   494 GMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKA--HPWIAD-DLN 537

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93VV5	PTR16_ARATH	No assigned EC number	0.7669	0.9579	0.8866	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	547
pfam00854	372	pfam00854, PTR2, POT family	1e-60
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	2e-25
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	1e-21
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	9e-09
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	4e-08
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	7e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.004

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  204 bits (521), Expect = 1e-60
 Identities = 110/406 (27%), Positives = 180/406 (44%), Gaps = 48/406 (11%)

Query: 104 FWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVA 163
           F T+L+   +   G +LL++ A  P L P                  + ++F++ LYL+A
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSP-----------------VQVALFYIGLYLIA 43

Query: 164 IGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGM 223
           +G+G +KPN+ A GADQFD     Q  +   +F+  YF+ + G L+A  +  ++Q + G 
Sbjct: 44  LGTGGIKPNVSAFGADQFD---ETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGY 100

Query: 224 DVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSI--FTPIAQVFVAAMLKRKQICPSNPQ 281
            +GFG+ A  M L L   + G+  Y+ K P G       IA +  AA   RK   P +  
Sbjct: 101 PLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSH 160

Query: 282 ML-HGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLI 340
            L   L + N  + S +   T R   +     K                   V  ++ ++
Sbjct: 161 WLYWALEKYNKRSISQTKVHT-RVAVIFIPLPKFWA---------LFDQQGSVWLLQAIL 210

Query: 341 SVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLY 400
            ++PI+A  I+ + +  QL T  V+Q   M+  +   F +PPAS QS   + ++IL+P+ 
Sbjct: 211 LMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPIL 270

Query: 401 DKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKT----- 455
           D    P  R     + G++  QR G G+F+   +   AA++E KR   A   G T     
Sbjct: 271 DFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWT 326

Query: 456 --LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMT 499
             L I    P+  I G+       G +EF        M +  T ++
Sbjct: 327 VPLFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLLS 368

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  109 bits (275), Expect = 2e-25
 Identities = 77/454 (16%), Positives = 167/454 (36%), Gaps = 64/454 (14%)

Query: 70  FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQ 129
           F  +++  + + +   V+L  ++GG+L+D  LG+  T+++   +   G ++L++ +    
Sbjct: 58  FDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---- 113

Query: 130 LKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS 189
                                     ++ L L+ +G+G  KPN+ +   + + + +P++ 
Sbjct: 114 -------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRD 154

Query: 190 KKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYR 249
              + +    Y   + G L+A  +   +  + G  VGFG++A  M +GL   + G  + +
Sbjct: 155 GGFTLF----YMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVK 210

Query: 250 NKR----PQGSIFTPIAQVFVA--AMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQR 303
                  P    F  +  V      M+    +          LNQN              
Sbjct: 211 GIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL-------LNQNTFSG---------- 253

Query: 304 FRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFS 363
              L    I +      +            ++ + L++ +P+F   +IF  +  Q+ +  
Sbjct: 254 --VLLVISILIAIIYFAEAFRSPKVF----DERRRLLAAIPLFLFAVIFWALYEQMGSSL 307

Query: 364 VQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQR 423
                   N+    F VPPA  QS+    +++  P+    +    R          P   
Sbjct: 308 NLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN------KQPSTP 361

Query: 424 IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFF 483
           I F L L    +    L+          SG   S++ +   +++    E+F +   +   
Sbjct: 362 IKFALGLILAGLGFLILLLAGIW-FGGPSGLV-SVWWLVLSYVLQSFGELFISPVGLSMV 419

Query: 484 YKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 517
            K +   +++F+ AM + + + G  L   +    
Sbjct: 420 TKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLT 453

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 98.7 bits (246), Expect = 1e-21
 Identities = 91/392 (23%), Positives = 162/392 (41%), Gaps = 66/392 (16%)

Query: 60  LITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI 119
           L+ Y++N + ++   + NI   F    +L  L+G  ++DS+LG F T+L    V + G  
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69

Query: 120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGAD 179
           L S+ A +P L  P  + ++                 + L L+A+G+G +KP      A 
Sbjct: 70  LASLGA-VPSLGHPLHDALS----------------LVGLALIALGTGGIKP---CVSAF 109

Query: 180 QFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL----VWVQTHSGMD---VGFGVSAA 232
             DQ   +Q      +F+  YFA + G L +  +       V      D   + FGV   
Sbjct: 110 GGDQFEERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGI 169

Query: 233 AMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVP 292
            M L L     G+  Y+ K P G+I + + +  V A+ KR +    +   LH        
Sbjct: 170 LMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKRFRTRSEDWPRLH-------- 221

Query: 293 NDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIF 352
                        +LD A           +   R+     +   K L+ V+ +F    +F
Sbjct: 222 -------------WLDWA---------APKYLIRM-----IRSTKRLLRVLFLFIPLPMF 254

Query: 353 NTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYT 412
             +  Q  +    Q + M+      F + P  +Q++  ++++ILVP++D    P   K  
Sbjct: 255 WALFDQQGSRWTLQATRMDGD-VGLFPIQPDQMQAVNPLLVLILVPIFDYVVYPALAKC- 312

Query: 413 GHESGISPLQRIGFGLFLATFSMISAALMEKK 444
              +  + L+++  G+ LA  +   AAL++ K
Sbjct: 313 --GTRFTSLRKMAVGMLLAALAFAVAALLQNK 342

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 87/469 (18%), Positives = 166/469 (35%), Gaps = 96/469 (20%)

Query: 70  FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQ 129
           FS   +  I   +   V+LL  +G +  D   G+  TM++ G V + G  +L++  +   
Sbjct: 45  FSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYP-- 102

Query: 130 LKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS 189
                                   + F  L  +A+GSG  K N  +     +++ +    
Sbjct: 103 -----------------------DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGD---M 136

Query: 190 KKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYR 249
            +    F   Y + + G  ++  +   +  + G  VGF ++A  M +GL    +G     
Sbjct: 137 PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR---H 193

Query: 250 NKRPQGSIFTP------------------IAQVFVAAMLKRKQICPSNPQMLHGLNQNNV 291
             R  GS+  P                  +A VF  A L           M H +  N +
Sbjct: 194 MLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWL-----------MHHVVIANIL 242

Query: 292 PNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII 351
                +V L     F   A     D   + +                + + + +F   ++
Sbjct: 243 LM---TVTLAVIIFFFRLAFKPRLDAVARNK----------------MYAYIVLFLEAVV 283

Query: 352 FNTILAQLQT-FSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARK 410
           F  + AQ+ T  +    + M++++     VP    QS+    +V+  P+    +    RK
Sbjct: 284 FWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK 342

Query: 411 YTGHESGISPLQRIGF--GLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF 468
                 G  P   + F  G+     S ++ A           D+G   S + +   +L  
Sbjct: 343 ------GKDPTTPLKFTLGMLFCGASFLTFA-----ASIWFADAGGLTSPWFMVLIYLFQ 391

Query: 469 GLSE-MFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSF 516
            L E M + +GL  ++ K + + +   +  M + + + G  L   L +F
Sbjct: 392 TLGELMISPLGL-SWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATF 439

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 46/223 (20%), Positives = 98/223 (43%), Gaps = 29/223 (13%)

Query: 31  NKHGGMKAAVF-VLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLL 89
           NKH     A++ V+ LQ +E  +   +   LI Y+ N++ +  +++  + + +   V++ 
Sbjct: 2   NKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVT 61

Query: 90  ALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKG 149
            +LGG+L+D  LG+   +++   +   G ++L      P                     
Sbjct: 62  PILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHP--------------------- 100

Query: 150 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELV 209
              S  +L+L ++  G G  K N+     + ++ ++P++       F+  Y A + G ++
Sbjct: 101 ---SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSII 153

Query: 210 ALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKR 252
           A     + Q      +GFG++A  M  GL   + G  ++ + R
Sbjct: 154 APIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTR 196

Length = 493

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 39/195 (20%)

Query: 44  GLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS 103
           GLQ   IMA+         Y++ ++  S ++S  + ++F   V+ L  +GG+L D  LG+
Sbjct: 39  GLQG--IMAV---------YLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGT 87

Query: 104 FWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVA 163
              +++   V   G+ L++   H                         A I ++ +  +A
Sbjct: 88  KRVIMLGAIVLAIGYALVAWSGH------------------------DAGIVYMGMATIA 123

Query: 164 IGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGM 223
           +G+G  K N  +  +  +++ +P    +L   F   Y + + G   ++    W+    G 
Sbjct: 124 VGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGW 179

Query: 224 DVGFGVSAAAMALGL 238
            V F +S   M + +
Sbjct: 180 SVAFALSVVGMLITV 194

Length = 500

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 33/202 (16%)

Query: 40  VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDS 99
           + +        +    + +  +  +  ++  S S +  IV+ F     L +LL GYLSD 
Sbjct: 2   LLLFLGFFLSGLDRGLL-SPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 100 FLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLAL 159
           F G    +L+   +   G +LL+  + L                             +  
Sbjct: 61  F-GRRRVLLLGLLLFALGSLLLAFASSLWL-------------------------LLVGR 94

Query: 160 YLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT 219
           +L+ +G G + P   A  A+ F        K+           F  G L+   +   +  
Sbjct: 95  FLLGLGGGALYPAAAALIAEWFP------PKERGRALGLFSAGFGLGALLGPLLGGLLAE 148

Query: 220 HSGMDVGFGVSAAAMALGLFGV 241
             G    F + A    L    +
Sbjct: 149 SLGWRWLFLILAILGLLLALLL 170

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	547
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
PRK12382	392	putative transporter; Provisional	99.92
PRK05122	399	major facilitator superfamily transporter; Provisi	99.92
PRK03545	390	putative arabinose transporter; Provisional	99.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.92
PRK10054	395	putative transporter; Provisional	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.91
PRK10504	471	putative transporter; Provisional	99.91
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.91
TIGR00895	398	2A0115 benzoate transport.	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.9
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.9
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.9
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.9
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.89
PRK09952	438	shikimate transporter; Provisional	99.89
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.89
TIGR00893	399	2A0114 d-galactonate transporter.	99.89
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.89
PRK09705	393	cynX putative cyanate transporter; Provisional	99.89
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.89
PRK10642	490	proline/glycine betaine transporter; Provisional	99.89
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.89
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.89
PRK12307	426	putative sialic acid transporter; Provisional	99.89
PRK10489	417	enterobactin exporter EntS; Provisional	99.89
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.88
PRK09874	408	drug efflux system protein MdtG; Provisional	99.88
PRK11663	434	regulatory protein UhpC; Provisional	99.88
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.88
PRK10091	382	MFS transport protein AraJ; Provisional	99.88
PRK03633	381	putative MFS family transporter protein; Provision	99.88
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.88
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.87
PRK03699	394	putative transporter; Provisional	99.87
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.87
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.87
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.87
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.87
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.87
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.87
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.87
PRK15011	393	sugar efflux transporter B; Provisional	99.86
PRK11043	401	putative transporter; Provisional	99.86
PLN00028	476	nitrate transmembrane transporter; Provisional	99.86
PRK15075	434	citrate-proton symporter; Provisional	99.86
PRK03893	496	putative sialic acid transporter; Provisional	99.86
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.85
PRK09528	420	lacY galactoside permease; Reviewed	99.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.85
PRK10133	438	L-fucose transporter; Provisional	99.84
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.84
TIGR00898	505	2A0119 cation transport protein.	99.84
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.84
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.84
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.84
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.83
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.83
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.83
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.83
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.83
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.82
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.82
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.82
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.82
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.82
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.81
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.8
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.8
TIGR00901	356	2A0125 AmpG-related permease.	99.8
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.79
PRK11010	491	ampG muropeptide transporter; Validated	99.78
KOG2532	466	consensus Permease of the major facilitator superf	99.78
KOG0254	513	consensus Predicted transporter (major facilitator	99.77
KOG0569	485	consensus Permease of the major facilitator superf	99.76
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.75
PRK11902	402	ampG muropeptide transporter; Reviewed	99.74
PRK09669	444	putative symporter YagG; Provisional	99.72
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.72
KOG2615	451	consensus Permease of the major facilitator superf	99.7
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.7
TIGR00805	633	oat sodium-independent organic anion transporter.	99.7
PRK10429	473	melibiose:sodium symporter; Provisional	99.7
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.69
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.69
PRK09848	448	glucuronide transporter; Provisional	99.68
PF13347	428	MFS_2: MFS/sugar transport protein	99.66
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.66
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.65
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.62
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.62
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.61
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.6
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.6
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.59
PRK11462	460	putative transporter; Provisional	99.59
PTZ00207	591	hypothetical protein; Provisional	99.57
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.56
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.55
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.55
PRK10642	490	proline/glycine betaine transporter; Provisional	99.5
KOG2533	495	consensus Permease of the major facilitator superf	99.5
COG2211	467	MelB Na+/melibiose symporter and related transport	99.5
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.49
PRK15011	393	sugar efflux transporter B; Provisional	99.48
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.46
PRK09952	438	shikimate transporter; Provisional	99.44
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.43
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.4
PRK05122	399	major facilitator superfamily transporter; Provisi	99.39
PRK03699	394	putative transporter; Provisional	99.38
TIGR00893	399	2A0114 d-galactonate transporter.	99.37
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.37
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.36
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.36
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.35
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.35
PRK09705	393	cynX putative cyanate transporter; Provisional	99.35
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.35
PRK11663	434	regulatory protein UhpC; Provisional	99.34
PRK09528	420	lacY galactoside permease; Reviewed	99.33
PRK03893	496	putative sialic acid transporter; Provisional	99.31
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.31
TIGR00891	405	2A0112 putative sialic acid transporter.	99.31
PRK09874	408	drug efflux system protein MdtG; Provisional	99.3
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.3
PRK12382	392	putative transporter; Provisional	99.29
PRK03545	390	putative arabinose transporter; Provisional	99.29
PRK15075	434	citrate-proton symporter; Provisional	99.28
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.28
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.27
PRK03633	381	putative MFS family transporter protein; Provision	99.27
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.26
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.26
PRK10489	417	enterobactin exporter EntS; Provisional	99.25
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.24
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.22
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.22
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.21
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.21
KOG2563	480	consensus Permease of the major facilitator superf	99.2
PRK11010	491	ampG muropeptide transporter; Validated	99.19
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.18
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.18
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.18
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.15
PLN00028	476	nitrate transmembrane transporter; Provisional	99.15
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.14
PRK10504	471	putative transporter; Provisional	99.13
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.13
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.13
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.12
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.12
PRK12307	426	putative sialic acid transporter; Provisional	99.12
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.12
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.11
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.11
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.1
TIGR00900	365	2A0121 H+ Antiporter protein.	99.1
TIGR00895	398	2A0115 benzoate transport.	99.08
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.05
PRK10091	382	MFS transport protein AraJ; Provisional	99.05
PRK10133	438	L-fucose transporter; Provisional	99.02
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.01
PRK10054	395	putative transporter; Provisional	99.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.0
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.99
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.99
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.99
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.99
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.98
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.97
KOG2532	466	consensus Permease of the major facilitator superf	98.96
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.95
PRK11902	402	ampG muropeptide transporter; Reviewed	98.93
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.89
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.89
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.84
PRK09848	448	glucuronide transporter; Provisional	98.84
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.84
PF13347	428	MFS_2: MFS/sugar transport protein	98.83
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.82
KOG0569	485	consensus Permease of the major facilitator superf	98.82
KOG3626	735	consensus Organic anion transporter [Secondary met	98.79
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.79
PRK11043	401	putative transporter; Provisional	98.78
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.77
TIGR00898	505	2A0119 cation transport protein.	98.75
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.74
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.73
TIGR00901	356	2A0125 AmpG-related permease.	98.73
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.71
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.7
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.69
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.63
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.61
PRK09669	444	putative symporter YagG; Provisional	98.61
PRK10429	473	melibiose:sodium symporter; Provisional	98.6
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.53
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.52
COG2211	467	MelB Na+/melibiose symporter and related transport	98.45
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.4
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.37
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.34
PRK11462	460	putative transporter; Provisional	98.32
KOG3762	618	consensus Predicted transporter [General function	98.26
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.25
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.2
KOG0637	498	consensus Sucrose transporter and related proteins	98.2
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.17
COG0477	338	ProP Permeases of the major facilitator superfamil	98.15
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.14
KOG2533	495	consensus Permease of the major facilitator superf	98.12
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.11
PF12832	77	MFS_1_like: MFS_1 like family	98.1
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.09
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.04
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.01
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.98
KOG3762	618	consensus Predicted transporter [General function	97.95
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.91
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.87
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.86
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.84
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.81
KOG0254	513	consensus Predicted transporter (major facilitator	97.77
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.74
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.6
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.58
TIGR00805	633	oat sodium-independent organic anion transporter.	97.46
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.3
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.19
KOG2563	480	consensus Permease of the major facilitator superf	97.19
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.19
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.09
KOG2615	451	consensus Permease of the major facilitator superf	96.88
PRK03612	521	spermidine synthase; Provisional	96.87
PTZ00207	591	hypothetical protein; Provisional	96.8
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.61
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.6
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.54
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.44
KOG3626	735	consensus Organic anion transporter [Secondary met	96.41
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.13
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.03
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	95.96
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.91
KOG0637	498	consensus Sucrose transporter and related proteins	95.12
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.0
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.72
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	93.58
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.57
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.3
KOG3097	390	consensus Predicted membrane protein [Function unk	90.97
KOG3880	409	consensus Predicted small molecule transporter inv	89.0
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.85
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	88.08
COG3202	509	ATP/ADP translocase [Energy production and convers	87.53
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	86.66
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	86.51
COG0477	338	ProP Permeases of the major facilitator superfamil	85.35
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	84.81
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.26
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	83.13
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	80.65

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-45  Score=396.98  Aligned_cols=503  Identities=42%  Similarity=0.694  Sum_probs=450.7

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHH
Q 008953           32 KHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFG  111 (547)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~  111 (547)
                      .+..|+....++..+.++++++|++..++..|++.++|.+...+.-.+..+.+...+.++++++++|.|+||.+++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953          112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK  191 (547)
Q Consensus       112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~  191 (547)
                      ++..+|..++..++.++.+.++.|......++|+..+......++.++.+.++|.|+.+|...++.+|++++..+.+++.
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            99999999999999999998887733333346777788888899999999999999999999999999999777777766


Q ss_pred             cccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhh
Q 008953          192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLK  271 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (547)
                      +.+.++++++..++|..++-.+..|++++.+|.+.|.++.+++.+++++++...+.++++++.++|...+.++++.+.++
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCC--CCCCCCCccccchhHHHHHHHHhHHHHHHHH
Q 008953          272 RKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGT--NKKESPWRLCTVTQVEQVKVLISVVPIFACT  349 (547)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (547)
                      ++...+.+++..     .+...+.....+.+.++++|.+.++.....  ....++|++++.+++++.|+.++.++++.+.
T Consensus       272 ~~~~~~~~~~~~-----~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~  346 (571)
T KOG1237|consen  272 RKAVVSLDPEEL-----YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTT  346 (571)
T ss_pred             HhccCCCcchhc-----cccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHH
Confidence            988777664433     011111122233566788888877643221  3456789999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccccCCCc-ceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHH
Q 008953          350 IIFNTILAQLQTFSVQQGSAMNNKLTKN-FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL  428 (547)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~  428 (547)
                      +.++.++.|+.+.++.|+..|+++++ + +.+|++.++.+..+..++..|+++++.+|+.+|..+++.++++..++.+|+
T Consensus       347 i~~~~~~aq~~t~~v~Q~~~mdr~~~-~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~  425 (571)
T KOG1237|consen  347 IIYSTVYAQMVTFFVLQATTMDRHLG-SNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGL  425 (571)
T ss_pred             HHHHHHHHhhhhheehhhhhcCCCCC-CCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccc
Confidence            99999999999999999999999998 6 899999999999999999999999999999999999877789999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCC---CCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 008953          429 FLATFSMISAALMEKKRRDSALD---SGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSF  505 (547)
Q Consensus       429 ~l~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~  505 (547)
                      ++..+++...+..|.+|.+...+   ...+.+++|++++++++|++|.+..++..++.++++|++||+.+++++.+...+
T Consensus       426 ~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~  505 (571)
T KOG1237|consen  426 VLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAV  505 (571)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877654   346899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCC-CCCCCccccccc
Q 008953          506 GFYLSSLLVSFVNKVTSSSSNRGWLS-ENDLSTKTGLIF  543 (547)
Q Consensus       506 G~~lg~~i~~~l~~~~~~~~~~~w~~-~~~~~~~~~~~~  543 (547)
                      |+.++.+++..+...++.  ...|++ +| ||.+|++||
T Consensus       506 G~~lss~Lv~~v~~~t~~--~~~w~~~~~-ln~~~ld~F  541 (571)
T KOG1237|consen  506 GNYLSSVLVSLVQFSTGK--AAEWLGFAN-LNKGRLDYF  541 (571)
T ss_pred             HHHHHHHHHHHHHHhcCC--CcccCChhH-hhhhHHHHH
Confidence            999999999999998754  457999 66 999999987

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-39  Score=332.74  Aligned_cols=422  Identities=18%  Similarity=0.312  Sum_probs=335.3

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC----CChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHH
Q 008953           32 KHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMH----FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTM  107 (547)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg----~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~  107 (547)
                      .-++||.++.+..++++|+++||++...+..|+.++++    +|++++..+.+.|....++.++++||++||++|+||++
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI   95 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI   95 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            34578999999999999999999999999999999888    99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc
Q 008953          108 LIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK  187 (547)
Q Consensus       108 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~  187 (547)
                      ..+.++.++|.+.++.+..                       .....++++.++..+|.|+++|+++++++|++|+++++
T Consensus        96 ~lGail~~iGh~~L~~~~~-----------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr  152 (498)
T COG3104          96 VLGAILMAIGHLVLAISSV-----------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR  152 (498)
T ss_pred             HHHHHHHHHHHHHHhcccc-----------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence            9999999999999998630                       13456889999999999999999999999999999877


Q ss_pred             cccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhH------
Q 008953          188 QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPI------  261 (547)
Q Consensus       188 ~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------  261 (547)
                          |..+++++|++.|+|+.++|.+.+++.+++||...|..+++.+.++++.++..++.....+...++....      
T Consensus       153 ----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~  228 (498)
T COG3104         153 ----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP  228 (498)
T ss_pred             ----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence                7788999999999999999999999999999999999999999999999999987766554222211111      


Q ss_pred             --HHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhH-hhhhhhccccCCCCCCCCCccccchhHHHHHH
Q 008953          262 --AQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRF-LDKACIKVEDGTNKKESPWRLCTVTQVEQVKV  338 (547)
Q Consensus       262 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (547)
                        ..++.......        .+.              ..+.+..+. +....+..........  .+ .++.+ ++|+|
T Consensus       229 ~~~~~~~~~~~~~--------~~~--------------~l~~~~~~~~~~~~~i~~~~~~~~~~--~~-~~~~~-~er~r  282 (498)
T COG3104         229 VLGGLVVMILAAL--------LTL--------------LLNQNTFSGVLLVISILIAIIYFAEA--FR-SPKVF-DERRR  282 (498)
T ss_pred             hHHHHHHHHHHHH--------HHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH--hc-cCccH-HHHHH
Confidence              01111111100        000              000000000 0000000000000000  00 12223 78899


Q ss_pred             HHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCC
Q 008953          339 LISVVPIFACTIIFNTILAQLQTFSVQQGSAMNN-KLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESG  417 (547)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~  417 (547)
                      .+..+.++++...||+.+.|+++.+..++..+.+ +.. |+.++++++|++|++.+++++|+.+++++++.++. ++   
T Consensus       283 ~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---  357 (498)
T COG3104         283 LLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---  357 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---
Confidence            9999999999999999999999866665554443 434 78899999999999999999999999999876665 23   


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHH
Q 008953          418 ISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTA  497 (547)
Q Consensus       418 ~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g  497 (547)
                      .+++.++.+|+++++.+++++.......    .+..+.++.+|+++.++++++||.+++|...+++++.+|+...+..+|
T Consensus       358 ps~~~KFalGl~l~g~~fl~l~~~~~~~----~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma  433 (498)
T COG3104         358 PSTPIKFALGLILAGLGFLILLLAGIWF----GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMA  433 (498)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHH
Confidence            3778889999999999999988874431    111457999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 008953          498 MTYCSYSFGFYLSSLLVS  515 (547)
Q Consensus       498 ~~~~~~~~G~~lg~~i~~  515 (547)
                      ++.+.+..|+.++..+.+
T Consensus       434 ~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         434 MWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHHHHHHHhhceecc
Confidence            999999999999988877

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=2e-35  Score=317.36  Aligned_cols=422  Identities=16%  Similarity=0.268  Sum_probs=310.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953           33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF  112 (547)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  112 (547)
                      ++|||.++.++++++++++++|++..+++.|+++++|++..++.++.+.+....++..+++|+++||++||||+++++.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999994499999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      ++.+++++++++.+                        ....++++|+++++|.|+.+|+..++++|++|+++++    |
T Consensus        90 ~~~~g~~~~~~~~~------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~  141 (489)
T PRK10207         90 VLAIGYFMTGMSLL------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----L  141 (489)
T ss_pred             HHHHHHHHHHHhcc------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----h
Confidence            99999999988632                        1223567899999999999999999999999987532    6


Q ss_pred             ccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeecc--CCCCCCchhHHHHHHH---
Q 008953          193 SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNK--RPQGSIFTPIAQVFVA---  267 (547)
Q Consensus       193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---  267 (547)
                      ++++++++++.|+|.+++|.+++++.++.||++.|+++.+.++++++.+...++.+++.  ++++++. |..+.+..   
T Consensus       142 ~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~  220 (489)
T PRK10207        142 DGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLG  220 (489)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHH
Confidence            78899999999999999999999999999999999998776666666666665444332  2222221 21111000   


Q ss_pred             H--HhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHH
Q 008953          268 A--MLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPI  345 (547)
Q Consensus       268 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (547)
                      .  .-.........                .   ............+....+.      ++..+.+ ..++++.+....+
T Consensus       221 ~~~~~~~~~~~~~~----------------~---~~~~~~~~~~~~i~~~~f~------~~~~~~~-~~~r~r~~~~~~l  274 (489)
T PRK10207        221 SVVMIFVCAWLMHN----------------V---EVANLVLIVLSIVVTIIFF------REAFKLD-KTGRNKMFVAFVL  274 (489)
T ss_pred             HHHHHHHHHHHHhh----------------h---hHHHHHHHHHHHHHHHHHH------HHHhcCC-HHHHHHHHHHHHH
Confidence            0  00000000000                0   0000000000000000000      0001111 2335566666667


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhh-hccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHH
Q 008953          346 FACTIIFNTILAQLQTFSVQQGS-AMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI  424 (547)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i  424 (547)
                      ++..+.+|+.+.|..+....+.. .++.... |+.++++.++++|++..++..|+.+++.+++.+    |+...++..++
T Consensus       275 ~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~----r~~~~~~~~k~  349 (489)
T PRK10207        275 MLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLGS----KGKDLSMPMKF  349 (489)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhh----CCCCCCcHHHH
Confidence            77889999999998765444333 3455555 788899999999999999999999877654433    33235788889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 008953          425 GFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYS  504 (547)
Q Consensus       425 ~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~  504 (547)
                      .+|+++.+++++.++......    .+.....+.+++++.+++.++||++.+|+.++++++.+|++++|.++|++++.++
T Consensus       350 ~~G~~l~~~~~~~~~~~~~~~----~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~  425 (489)
T PRK10207        350 TLGMFLCSLGFLTAAAAGMWF----ADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQA  425 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh----cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            999999999987765433211    0112246788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 008953          505 FGFYLSSLLVSFVN  518 (547)
Q Consensus       505 ~G~~lg~~i~~~l~  518 (547)
                      +|+.+|..+.....
T Consensus       426 ig~~lg~~l~~~~~  439 (489)
T PRK10207        426 AAFLLGGYVATFTA  439 (489)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998887553

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=2.8e-35  Score=312.39  Aligned_cols=417  Identities=17%  Similarity=0.255  Sum_probs=311.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      +|||.++.+++.++++++++|++..+++.|+++++|+++.+++.+.+.+....+++++++|+++||++||||+++++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999976999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      ..++.+++....+                        ....++++..+..+|.|...++.+++++|++|+++++    |.
T Consensus        86 ~~lg~lll~~~~~------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~  137 (493)
T PRK15462         86 MAIGHVVLGASEI------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RD  137 (493)
T ss_pred             HHHHHHHHHHhhc------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----cc
Confidence            9998877664311                        1122444555667888888899999999999987433    88


Q ss_pred             cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCC-CCCCchh--HHHH------
Q 008953          194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRP-QGSIFTP--IAQV------  264 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~--~~~~------  264 (547)
                      ++++++|+..|+|+.++|.+++++.++.||++.|.++++.++++++.++..++.+.+... +.+|.++  ....      
T Consensus       138 sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  217 (493)
T PRK15462        138 GGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLL  217 (493)
T ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHH
Confidence            899999999999999999999999999999999999888888888777766655433211 1112111  0000      


Q ss_pred             HHH----HHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHh-hhhhhc-cccCCCCCCCCCccccchhHHHHHH
Q 008953          265 FVA----AMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFL-DKACIK-VEDGTNKKESPWRLCTVTQVEQVKV  338 (547)
Q Consensus       265 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  338 (547)
                      +..    ........                        + +..... -...+. ......     ....+ ...++|+|
T Consensus       218 ~~~~~~~~~~~~~~~------------------------~-~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~er~r  266 (493)
T PRK15462        218 VLLVATPALITVLFW------------------------K-EWSVYALIVATIIGLGVLAK-----IYRKA-ENQKQRKE  266 (493)
T ss_pred             HHHHHHHHHHHHHHH------------------------H-HHHHHHHHHHHHHHHHHHHH-----HHHhc-CCHHHHhh
Confidence            000    00000000                        0 000000 000000 000000     00001 12356888


Q ss_pred             HHhHHHHHHHHHHHHHHHhhhhhh-hhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCC
Q 008953          339 LISVVPIFACTIIFNTILAQLQTF-SVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESG  417 (547)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~  417 (547)
                      +...+.++++.+.||+.++|.++. .....+.++.++. |+.+|++++|++|++.+++++|+..+++.++.+|  +|.  
T Consensus       267 ~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~--~~~--  341 (493)
T PRK15462        267 LGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG--NRT--  341 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC--CCC--
Confidence            889999999999999999999874 3334467888888 9999999999999999999999999987654332  122  


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHH
Q 008953          418 ISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTA  497 (547)
Q Consensus       418 ~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g  497 (547)
                      .+...++.+|+++++++++++......     .+++...+.+|++..++++++||.+.+|...+.+++.+|++.||+.+|
T Consensus       342 ~s~~~Kfa~g~~~~g~~f~~l~~~~~~-----~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg  416 (493)
T PRK15462        342 VRIWGKFALGLGLMSAGFCILTLSARW-----SAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTG  416 (493)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHH
Confidence            367788999999999999988775432     122235889999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHH
Q 008953          498 MTYCS-YSFGFYLSSLLVSFVNK  519 (547)
Q Consensus       498 ~~~~~-~~~G~~lg~~i~~~l~~  519 (547)
                      ++.+. ..+|+.++..+......
T Consensus       417 ~w~l~~~~~~~~~~g~~~~~~~~  439 (493)
T PRK15462        417 IYMLLSGAIANYLAGVIADQTSQ  439 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            99774 46888888777765543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=2.6e-34  Score=308.40  Aligned_cols=423  Identities=17%  Similarity=0.242  Sum_probs=314.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh--cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953           33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINE--MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF  110 (547)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~  110 (547)
                      .++||.++.+.+.++++++++|++.++++.|++++  +|++..+++.+.+.+.++..++++++|+++||++||||++.++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            46789999999999999999999999999999987  9999999999999999999999999999999944999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953          111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK  190 (547)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~  190 (547)
                      .++..++.++++++.                         +...+++++++.++|.|+..|+..++++|++|++++++  
T Consensus        86 ~~~~~~g~~~~~~~~-------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~--  138 (475)
T TIGR00924        86 GIVLMLGHFMLAMSI-------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR--  138 (475)
T ss_pred             HHHHHHHHHHHHhcc-------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc--
Confidence            999999998888752                         34457788999999999999999999999999765333  


Q ss_pred             ccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhH-----HH--
Q 008953          191 KLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPI-----AQ--  263 (547)
Q Consensus       191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~--  263 (547)
                       |+++++++|++.|+|.++||.+++++.++.||++.|+++++.++++++.++..++.+++.++++++..+.     .+  
T Consensus       139 -r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (475)
T TIGR00924       139 -RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLL  217 (475)
T ss_pred             -ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHH
Confidence             7889999999999999999999999999999999999988777777766666665554333222221110     00  


Q ss_pred             ----HHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHH
Q 008953          264 ----VFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVL  339 (547)
Q Consensus       264 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (547)
                          .+....+.........                  ..+ .............  .......     +..+..++++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~  271 (475)
T TIGR00924       218 ALLAALALVFFCAWLMHHVV------------------IAN-ILLMTVTLAVIIF--FFRLAFK-----PRLDAVARNKM  271 (475)
T ss_pred             HHHHHHHHHHHHHHHHhccH------------------HHH-HHHHHHHHHHHHH--HHHHHHh-----ccCCHHHHhHH
Confidence                0000011000000000                  000 0000000000000  0000000     01112233444


Q ss_pred             HhHHHHHHHHHHHHHHHhhhhhh-hhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCC
Q 008953          340 ISVVPIFACTIIFNTILAQLQTF-SVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGI  418 (547)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~  418 (547)
                      ...+.+++..+++|+.+.|+.+. ...+...++..+. ++.+++++++++|++.++++.|+.++++.++.+|    ..+.
T Consensus       272 ~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~  346 (475)
T TIGR00924       272 YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDP  346 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCC
Confidence            45677888899999999998884 4445556777766 7889999999999999999999998765544443    1113


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH
Q 008953          419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM  498 (547)
Q Consensus       419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~  498 (547)
                      +...++.+|+++.+++++.++.....     .+++...+++|+++++++.++||.+..|..++++++.+|++.||+++|+
T Consensus       347 ~~~~k~~~G~~l~~~~~~~~~~~~~~-----~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~  421 (475)
T TIGR00924       347 TTPLKFTLGMLFCGASFLTFAASIWF-----ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGM  421 (475)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence            56667899999999999888765211     1223357999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 008953          499 TYCSYSFGFYLSSLLVSFVNK  519 (547)
Q Consensus       499 ~~~~~~~G~~lg~~i~~~l~~  519 (547)
                      +.+...+|+.+++.+......
T Consensus       422 ~~l~~~~g~~l~~~~~~~~~~  442 (475)
T TIGR00924       422 WFLAQAMGSLLGGYLATFGAV  442 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999998876544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=4.8e-33  Score=300.37  Aligned_cols=415  Identities=14%  Similarity=0.242  Sum_probs=305.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      +++|.++.+++.++++++.+|++..+++.|+++++|++..+++++.+.+........+++|+++||++|||+++.++.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999998888777788889999999944999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      ..++..+++++.+                        ....++++++++++|.|...+...++++|++|+++++    |.
T Consensus        98 ~~ig~~l~~~~~~------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~  149 (500)
T PRK09584         98 LAIGYALVAWSGH------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LD  149 (500)
T ss_pred             HHHHHHHHHHhcc------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hh
Confidence            9999888887531                        2345677888999999999999999999999876432    55


Q ss_pred             cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeecc--CCCCCCchhH--H----HHH
Q 008953          194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNK--RPQGSIFTPI--A----QVF  265 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~--~----~~~  265 (547)
                      +++++++++.|+|.+++|.+++++.++.||++.|++.++..+++++.++..++..+++  ++++++.+..  .    .+.
T Consensus       150 ~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (500)
T PRK09584        150 GAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVV  229 (500)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHH
Confidence            6789999999999999999999999999999999998877777666655544443332  1222222111  0    000


Q ss_pred             HHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHH
Q 008953          266 VAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPI  345 (547)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (547)
                      .......... . ++..                  ............. ....      ...+. ....++++.+..+.+
T Consensus       230 ~~~~~~~~~~-~-~~~~------------------~~~~~~~~~~~~~-~~~~------~~~~~-~~~~~~~~~~~~~~~  281 (500)
T PRK09584        230 ALIAIATWLL-H-NQEI------------------ARMALGVVALGIV-VIFG------KEAFA-MKGAARRKMIVAFIL  281 (500)
T ss_pred             HHHHHHHHHH-h-cchH------------------HHHHHHHHHHHHH-HHHH------HHHhh-cCHHHHHHHHHHHHH
Confidence            0000000000 0 0000                  0000000000000 0000      00011 122345566666777


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhh-ccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHH
Q 008953          346 FACTIIFNTILAQLQTFSVQQGSA-MNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI  424 (547)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i  424 (547)
                      ++..+.||+.+.|+++.+..+... ++..+. |+.+++++++++|++.+++..|+.++++.++    .+|   .++.+++
T Consensus       282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l----~~r---~~~~~~~  353 (500)
T PRK09584        282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKM----GDR---LPMPHKF  353 (500)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHh----CcC---CCcHHHH
Confidence            788899999999999877665433 444555 7888999999999999999999998875443    333   3567889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 008953          425 GFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYS  504 (547)
Q Consensus       425 ~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~  504 (547)
                      .+|+++++++++.+......     .++.+..+.+|+++++++.++||++.+|...+++++.+|++.||+.+|++.+...
T Consensus       354 ~~G~~l~~l~f~~l~~~~~~-----~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a  428 (500)
T PRK09584        354 AIGMVLCSGAFLVLPLGAKF-----ANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTA  428 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-----cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            99999999999988776431     1223457788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 008953          505 FGFYLSSLLVSFV  517 (547)
Q Consensus       505 ~G~~lg~~i~~~l  517 (547)
                      +|+.++..+.+..
T Consensus       429 ~g~~~~g~~~~~~  441 (500)
T PRK09584        429 GAALIAGYVANLM  441 (500)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888887644

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.96  E-value=1.3e-26  Score=254.11  Aligned_cols=339  Identities=27%  Similarity=0.450  Sum_probs=275.2

Q ss_pred             HHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008953           51 MAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQL  130 (547)
Q Consensus        51 ~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~  130 (547)
                      +++|++...+..|+++.+|++..++..+...+.....+.++++|+++|+++||++++.++.++..+|..++++++. +..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999998887542 110


Q ss_pred             CCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHH
Q 008953          131 KPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVA  210 (547)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~  210 (547)
                                      .+.......+++.++.++|.|+++|+..+..+|+++++++++   |.++++++|+++|+|+.++
T Consensus        80 ----------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~---~~s~F~~fY~~iNiGSlis  140 (654)
T TIGR00926        80 ----------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSL---RSRFFSFFYFAINAGSLIS  140 (654)
T ss_pred             ----------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhH---HHHHHHHHHHHHHHHHHHH
Confidence                            011223446678888999999999999999999998754332   8899999999999999999


Q ss_pred             HHHHHHhhccc-------chhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccc
Q 008953          211 LTVLVWVQTHS-------GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQML  283 (547)
Q Consensus       211 ~~i~~~l~~~~-------g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (547)
                      +++.+++.+..       +|..+|.+++++++++++.+...++.++++++.+++.....++++...+++.......    
T Consensus       141 ~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~----  216 (654)
T TIGR00926       141 TIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH----  216 (654)
T ss_pred             HHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc----
Confidence            99999998543       6999999999999999999988888887777777766666666666655443211100    


Q ss_pred             cccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhh
Q 008953          284 HGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFS  363 (547)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (547)
                                        ....+++.+...              ...++++++|++++++.+++...++|..+.|..+.+
T Consensus       217 ------------------~~~~~ld~a~~~--------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~  264 (654)
T TIGR00926       217 ------------------WPLHWLDYAKDK--------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRW  264 (654)
T ss_pred             ------------------cchhHHHHhccc--------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence                              011333332211              223467888999999999999999999999999988


Q ss_pred             hhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008953          364 VQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEK  443 (547)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~  443 (547)
                      ..|...++.+++ ++.+++.+++.++++.++++.|++++.++|..+|.+.+   .++..++.+|++++++++++.+..+.
T Consensus       265 ~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~  340 (654)
T TIGR00926       265 TLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQL  340 (654)
T ss_pred             HHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888777 78889999999999999999999998888877665433   57889999999999999999999988


Q ss_pred             Hhhhcc
Q 008953          444 KRRDSA  449 (547)
Q Consensus       444 ~~~~~~  449 (547)
                      .++...
T Consensus       341 ~~~~~~  346 (654)
T TIGR00926       341 KVNPTL  346 (654)
T ss_pred             HHhccc
Confidence            775433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=5.4e-23  Score=222.43  Aligned_cols=402  Identities=11%  Similarity=0.006  Sum_probs=240.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      |..+..+++..+......-.+..-+| .+.+++|.+..+.+++.+.|.++..++.++.|+++||+ |||++++++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            34455555555555555544444444 55678999999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCC-CCCCccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQF-DQSNPKQSKKLSS  194 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~  194 (547)
                      +++++++.+                         .+...++++|+++|+|.++..+...+.+.+.+ |+++      |++
T Consensus        83 ~~~~~~~~a-------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~  131 (495)
T PRK14995         83 LASLAAAFS-------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNM  131 (495)
T ss_pred             HHHHHHHHc-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHH
Confidence            999999987                         45677999999999999998887777777776 4455      899


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHH-Hhhhc
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAA-MLKRK  273 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  273 (547)
                      +++++....++|..+||.+++++.++.|||+.|++.....++.++......++.+.++.++.+........... .....
T Consensus       132 ~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~  211 (495)
T PRK14995        132 ALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYS  211 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998766555554444443333221111111111110000000 00000


Q ss_pred             ccCCCCcccccccCCCCCCCCCCccccccchhHhhh-hhhccc---cCCCCCCCCCccccchhHHHHHHHHhHHHHHHHH
Q 008953          274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK-ACIKVE---DGTNKKESPWRLCTVTQVEQVKVLISVVPIFACT  349 (547)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (547)
                      ........+                 .......... ......   ..+.....|.  .+.+..+++......+..++..
T Consensus       212 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~--~~~~lf~~~~~~~~~~~~~~~~  272 (495)
T PRK14995        212 AKTALKGFL-----------------SLWVTSLTLLTGALLLGLFIRTQLAASRPM--IDMRLFTHRIILSGVVMAMTAM  272 (495)
T ss_pred             HHhccccCC-----------------chHHHHHHHHHHHHHHHHHHHHHhcCCCCC--cCHHHhCCcccHHHHHHHHHHH
Confidence            000000000                 0000000000 000000   0000011111  1111112211111111111111


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccccCCCcce-eCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHH
Q 008953          350 IIFNTILAQLQTFSVQQGSAMNNKLTKNFH-VPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL  428 (547)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~  428 (547)
                      ..++......+. +.++      ..  |++ ...+.......+...+..++.+++.+    |.++       ++.+..|+
T Consensus       273 ~~~~~~~~~~~~-~lq~------v~--g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~----r~g~-------~~~~~~g~  332 (495)
T PRK14995        273 ITLVGFELLMAQ-ELQF------VH--GLSPLEAGMFMLPVMVASGFSGPIAGILVS----RLGL-------RLVATGGM  332 (495)
T ss_pred             HHHHHHHHHHHH-HHHH------Hc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCc-------hHHHHHHH
Confidence            111111111111 1111      00  111 11122223333445555566555543    4332       24467788


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 008953          429 FLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFY  508 (547)
Q Consensus       429 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~  508 (547)
                      ++.+++.+.+.....           ..+.+......++.|+|.+...++....+.+.+|++.++.+++++++.+.+|+.
T Consensus       333 ~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~  401 (495)
T PRK14995        333 ALSALSFYGLAMTDF-----------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG  401 (495)
T ss_pred             HHHHHHHHHHHHhcC-----------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH
Confidence            888777766554321           234444566778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 008953          509 LSSLLVSFVNKV  520 (547)
Q Consensus       509 lg~~i~~~l~~~  520 (547)
                      +|+++.+.+.+.
T Consensus       402 ~G~ai~g~i~~~  413 (495)
T PRK14995        402 LGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=1.2e-22  Score=209.26  Aligned_cols=359  Identities=11%  Similarity=0.074  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHH
Q 008953           41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFIL  120 (547)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l  120 (547)
                      .++...++..+........+|.|.. +++.++.+.+++.+.+.++..++.++.|+++||+ ||||+++.+.++..++.++
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence            3455566666666666666777775 5899999999999999999999999999999997 9999999998888887777


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhh
Q 008953          121 LSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY  200 (547)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  200 (547)
                      +......+                    ..+...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+
T Consensus        81 ~~~~~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  134 (365)
T TIGR00900        81 LPFVALLG--------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQ  134 (365)
T ss_pred             HHHHHHcC--------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHH
Confidence            77653211                    1256778899999999999999999999999999887      999999999


Q ss_pred             hHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCch-hHHHHHHHHHhhhcccCCCC
Q 008953          201 FAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFT-PIAQVFVAAMLKRKQICPSN  279 (547)
Q Consensus       201 ~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  279 (547)
                      ...++|..++|.+++++.++.||++.|++.++..+++.+..+..+.+.+.++ ++++.+ +..+                
T Consensus       135 ~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------------  197 (365)
T TIGR00900       135 AVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS-EIQALSNAVLR----------------  197 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-cccccchhHHH----------------
Confidence            9999999999999999999999999998876665555444443222111100 000000 0000                


Q ss_pred             cccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHH-HHHHHHHHHHHHHhh
Q 008953          280 PQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVV-PIFACTIIFNTILAQ  358 (547)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  358 (547)
                                               +..+.               ++    ...+++ .++... ..+.....+......
T Consensus       198 -------------------------~~~~~---------------~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  232 (365)
T TIGR00900       198 -------------------------DTREG---------------IK----FVLKNP-LLRTLLLLALLFNLVFAPAIVA  232 (365)
T ss_pred             -------------------------HHHhH---------------HH----HHHcCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence                                     00000               00    000111 111111 111111111111111


Q ss_pred             hhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008953          359 LQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISA  438 (547)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~  438 (547)
                      ....+..+....+.       ...+.......++.++..++..++    .+|.+       +++.+..+.++.+++....
T Consensus       233 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~-------~~~~~~~~~~~~~~~~~~~  294 (365)
T TIGR00900       233 LFPYVQSKYLGRGS-------THYGWVLAAFGLGALLGALLLGLL----GRYFK-------RMALMTGAIFVIGLAILVV  294 (365)
T ss_pred             HhHHHHHHHhCCch-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHhc-------hhHHHHHHHHHHHHHHHHH
Confidence            11111111000000       011222233334444444444433    33332       2344556666666666655


Q ss_pred             HHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          439 ALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  518 (547)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~  518 (547)
                      ....            + +.+.+.+..++.+++.+...+...++..|..|++.|+++.|+.++...+|..+++.+.+.+.
T Consensus       295 ~~~~------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       295 GLTP------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             Hhhc------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5531            1 35666777889999999999999999999999999999999999999999999999999887


Q ss_pred             Hh
Q 008953          519 KV  520 (547)
Q Consensus       519 ~~  520 (547)
                      +.
T Consensus       362 ~~  363 (365)
T TIGR00900       362 DH  363 (365)
T ss_pred             HH
Confidence            74

>PRK12382 putative transporter; Provisional

Probab=99.92  E-value=3.6e-22  Score=209.36  Aligned_cols=351  Identities=10%  Similarity=0.021  Sum_probs=229.0

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      .+.++.+.+..++..+......+.+|.|+.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||.+..+.+...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG   92 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence            35566777777777777777788899999999999999999999999999999999999999997 99999999887766


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.+........+.                 ....+...++++|+++|++.+...+...+++.|.+|+++      |+++
T Consensus        93 ~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a  149 (392)
T PRK12382         93 LAGLAYLLAAILPV-----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKV  149 (392)
T ss_pred             HHHHHHHhhhcccc-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchh
Confidence            65543332211110                 001356778999999999999888888888899999887      9999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI  275 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (547)
                      +++...+.++|..++|.+++++.+..||++.+.+..+..++.+.   ..+ +.++++++++...                
T Consensus       150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~----------------  209 (392)
T PRK12382        150 MSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAGERP----------------  209 (392)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcccCc----------------
Confidence            99999999999999999999999889999876654433222221   111 1111110000000                


Q ss_pred             CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHh-HHHHHHHHHHHHH
Q 008953          276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLIS-VVPIFACTIIFNT  354 (547)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  354 (547)
                                                   +..+                          ..+..+. .+...+....+..
T Consensus       210 -----------------------------~~~~--------------------------~~~~~~~~~~~~~l~~~~~~~  234 (392)
T PRK12382        210 -----------------------------SLWS--------------------------VVGLIWKPGLGLALQGVGFAV  234 (392)
T ss_pred             -----------------------------hHHH--------------------------HHHHHHHhHHHHHHHHHHHhH
Confidence                                         0000                          0000000 0111111111222


Q ss_pred             HHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953          355 ILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS  434 (547)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~  434 (547)
                      .....+.++. +     .    ++. ..........+..++..++.+++.    +|.++|       +.+..+..+.+++
T Consensus       235 ~~~~~~~~~~-~-----~----~~~-~~~~~~~~~~~~~~~~~~~~g~l~----~r~g~~-------~~~~~~~~~~~~~  292 (392)
T PRK12382        235 IGTFVSLYFA-S-----K----GWA-MAGFTLTAFGGAFVLMRVLFGWMP----DRFGGV-------KVAIVSLLVETVG  292 (392)
T ss_pred             HHHHHHHHHH-h-----c----CCc-hhHHHHHHHHHHHHHHHHHHHHHH----HhcCCC-------eehHHHHHHHHHH
Confidence            2111111111 1     0    111 011111222233344445555443    344333       3366677777777


Q ss_pred             HHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          435 MISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV  514 (547)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~  514 (547)
                      ++.....              .+.+...+..++.+++.+...+.......+..|+++||++.|+++....+|+.+++.+.
T Consensus       293 ~~~~~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~  358 (392)
T PRK12382        293 LLLLWLA--------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLA  358 (392)
T ss_pred             HHHHHHc--------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665543              13455566778889999988888888889999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 008953          515 SFVNKVT  521 (547)
Q Consensus       515 ~~l~~~~  521 (547)
                      +++.+..
T Consensus       359 g~l~~~~  365 (392)
T PRK12382        359 GMLATSF  365 (392)
T ss_pred             HHHHHHh
Confidence            9888743

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.92  E-value=4.2e-22  Score=209.26  Aligned_cols=351  Identities=12%  Similarity=0.024  Sum_probs=235.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      .+|++..+++..+...+......+.+|.|+.+++|.++.+.+++.+++.++..++.++.|+++||+ ||||+++.+.++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence            357788888889999999888889999999999999999999999999999999999999999997 9999999999888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++.+.+.++.....                 ....+...+++.|+++|++.+...+...+++.|.+|+++      |++
T Consensus        92 ~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  148 (399)
T PRK05122         92 ALSGLLYLLAGLLAA-----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGR  148 (399)
T ss_pred             HHHHHHHHHhhhhhc-----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hcc
Confidence            887766655421000                 000245578899999999999999998888899999887      899


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcc
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQ  274 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (547)
                      ++++.....++|..+++.+++++.++.||++.+++..+..++.++..   ++ .+..++++++..               
T Consensus       149 ~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~---------------  209 (399)
T PRK05122        149 VISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGERL---------------  209 (399)
T ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCccch---------------
Confidence            99998888899999999999999999999988877554433332221   11 110000000000               


Q ss_pred             cCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHh-HHHHHHHHHHHH
Q 008953          275 ICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLIS-VVPIFACTIIFN  353 (547)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  353 (547)
                                                    ++.                          +..++.+. .....+..+.+.
T Consensus       210 ------------------------------~~~--------------------------~~~~~~~~~~~~~~~~~~~~~  233 (399)
T PRK05122        210 ------------------------------PFR--------------------------RVLGRVWPYGMGLALASIGFG  233 (399)
T ss_pred             ------------------------------hHH--------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence                                          000                          00011111 011111112222


Q ss_pred             HHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 008953          354 TILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATF  433 (547)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i  433 (547)
                      ......+.++..+          +.. ..+.......++.++..++..++    .+|.+       +++.+..+.++.++
T Consensus       234 ~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~g~l----~~r~~-------~~~~~~~~~~~~~~  291 (399)
T PRK05122        234 TIATFITLYYAAR----------GWD-GAALALTLFGVAFVGARLLFGNL----INRLG-------GLRVAIVSLLVEIL  291 (399)
T ss_pred             HHHHHHHHHHHHc----------ccc-cchHHHHHHHHHHHHHHHHHHHH----HHHhc-------cHHHHHHHHHHHHH
Confidence            2212222211111          110 01111122223333333444433    33432       33456667777777


Q ss_pred             HHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008953          434 SMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLL  513 (547)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i  513 (547)
                      +.+.....              .+.+..++..++.|++.+...+.......+..|++.||+++|+++....+|..+++.+
T Consensus       292 ~~~~~~~~--------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  357 (399)
T PRK05122        292 GLLLLWLA--------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPL  357 (399)
T ss_pred             HHHHHHHh--------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77665543              2445566677899999998888888888899999999999999999999999999999


Q ss_pred             HHHHHHh
Q 008953          514 VSFVNKV  520 (547)
Q Consensus       514 ~~~l~~~  520 (547)
                      .+.+.+.
T Consensus       358 ~g~l~~~  364 (399)
T PRK05122        358 AGLVASW  364 (399)
T ss_pred             HHHHHHH
Confidence            9888763

>PRK03545 putative arabinose transporter; Provisional

Probab=99.92  E-value=1.8e-22  Score=211.66  Aligned_cols=348  Identities=9%  Similarity=0.008  Sum_probs=226.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      |..++.+.+..+......+...+.+ +.+.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence            4456666666665545545333334 456778999999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.+.+.++                         +++..+++.|+++|++.+...+...+++.|.+|+++      |+++
T Consensus        86 ~~~~~~~~~-------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~  134 (390)
T PRK03545         86 ASHVLSALA-------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQA  134 (390)
T ss_pred             HHHHHHHHh-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhH
Confidence            999888886                         456778899999999999888888899999999887      9999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI  275 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (547)
                      +++...+.++|..++|.+++.+.++.|||+.|++.++..++..+..+...++.    +++++ .+ .+            
T Consensus       135 ~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~----~~~~~-~~-~~------------  196 (390)
T PRK03545        135 LSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL----PSEHS-GS-LK------------  196 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCCc-ch-HH------------
Confidence            99999999999999999999999999999999987765555443333322211    11000 00 00            


Q ss_pred             CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHH
Q 008953          276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTI  355 (547)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (547)
                                                      +..                    +..++++........++.....+..
T Consensus       197 --------------------------------~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~  224 (390)
T PRK03545        197 --------------------------------SLP--------------------LLFRRPALVSLYLLTVVVVTAHFTA  224 (390)
T ss_pred             --------------------------------HHH--------------------HHHhCcHHHHHHHHHHHHHHHHHHH
Confidence                                            000                    0001111111111111112222222


Q ss_pred             HhhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953          356 LAQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS  434 (547)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~  434 (547)
                      +...+.+...       ..  +.+. ..+.+.....+..++...+.+++.    +|.++        +.+..+..+.+++
T Consensus       225 ~~~~~~~l~~-------~~--g~s~~~~~~~~~~~~~~~~~g~~~~g~l~----dr~~~--------~~~~~~~~~~~~~  283 (390)
T PRK03545        225 YSYIEPFVQQ-------VA--GLSENFATLLLLLFGGAGIIGSVLFSRLG----NRHPS--------GFLLIAIALLLVC  283 (390)
T ss_pred             HHHHHHHHHH-------hc--CCCccHHHHHHHHHHHHHHHHHHHHHHHh----hccch--------hHHHHHHHHHHHH
Confidence            2222222111       00  1111 112222233334444444444332    33221        2245555555555


Q ss_pred             HHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          435 MISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV  514 (547)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~  514 (547)
                      .......             ..+.+.+++..++.|++.....+.......+..| +.|++++|+++....+|..+|+.+.
T Consensus       284 ~~~l~~~-------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~  349 (390)
T PRK03545        284 LLLLLPA-------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLG  349 (390)
T ss_pred             HHHHHHH-------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443322             1245566667788888888877888888888877 5789999999999999999999999


Q ss_pred             HHHHHhh
Q 008953          515 SFVNKVT  521 (547)
Q Consensus       515 ~~l~~~~  521 (547)
                      +++.+..
T Consensus       350 G~~~~~~  356 (390)
T PRK03545        350 NQVSLHL  356 (390)
T ss_pred             HHHHhcc
Confidence            9988743

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.92  E-value=1.5e-22  Score=213.14  Aligned_cols=349  Identities=10%  Similarity=0.113  Sum_probs=234.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953           40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI  119 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~  119 (547)
                      +.+....++...+.+.+.+.++.|+++++|.+..+.+++.+...+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            5677888899999999999999999999999999999999999999999999999999997 999999999999999888


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953          120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA  199 (547)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  199 (547)
                      ++...                         ++.+.+++.|++.|++.+...|...+++.|.+|+++      |++++++.
T Consensus        92 ~~~~~-------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~  140 (400)
T PRK11646         92 TMAIA-------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLL  140 (400)
T ss_pred             HHHHh-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHH
Confidence            88775                         345668888999999998888888899999999877      89999999


Q ss_pred             hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCC
Q 008953          200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSN  279 (547)
Q Consensus       200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (547)
                      +...++|..+||.+++++. ..||++.|++.++..++..+......++.+. ++..++   ..+                
T Consensus       141 ~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~---~~~----------------  199 (400)
T PRK11646        141 MMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTP---VRE----------------  199 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchh---hHH----------------
Confidence            9999999999999999998 6799999998766555443333222221100 000000   000                


Q ss_pred             cccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 008953          280 PQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL  359 (547)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (547)
                                               .                   ++    ...++++.....+    ....++....+.
T Consensus       200 -------------------------~-------------------~~----~~~~~~~~~~~~~----~~~~~~~~~~~~  227 (400)
T PRK11646        200 -------------------------G-------------------MT----RVLRDKRFVTYVL----TLTGYYMLAVQV  227 (400)
T ss_pred             -------------------------H-------------------HH----HHHcCchHHHHHH----HHHHHHHHHHHH
Confidence                                     0                   00    0001111111111    111111111111


Q ss_pred             hhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008953          360 QTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAA  439 (547)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~  439 (547)
                      ......   ..++. + +.....+.+.....+..........+    +.+|   |   .+.++.+..+..+.+++.+.++
T Consensus       228 ~~~~p~---~~~~~-~-~~~~~~g~l~~~~~~~~~~~~~~~~~----~~~~---r---~~~~~~~~~~~~~~~~~~~~l~  292 (400)
T PRK11646        228 MLMLPI---MVNDI-A-GSPSAVKWMYAIEACLSLTLLYPIAR----WSEK---R---FRLEHRLMAGLLIMSLSMFPIG  292 (400)
T ss_pred             HHhhhh---hHHhh-c-CCchHHHHHHHHHHHHHHHHHHHHHH----HHHH---h---cchhHHHHHHHHHHHHHHHHHH
Confidence            111110   01111 0 00001111212222222211111121    1112   1   1333456777777777777666


Q ss_pred             HHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          440 LMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  519 (547)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~  519 (547)
                      ..+              +.+.+.+..++.+++.+...|...++..+.+|++.||+++|++++...+|..+|+.+.+++.+
T Consensus       293 ~~~--------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        293 MVS--------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             Hhh--------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence            542              344455566778889998889999999999999999999999999999999999999999998


Q ss_pred             hhc
Q 008953          520 VTS  522 (547)
Q Consensus       520 ~~~  522 (547)
                      .++
T Consensus       359 ~~~  361 (400)
T PRK11646        359 LGK  361 (400)
T ss_pred             HHh
Confidence            764

>PRK10054 putative transporter; Provisional

Probab=99.92  E-value=8.1e-23  Score=214.73  Aligned_cols=353  Identities=13%  Similarity=0.103  Sum_probs=233.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      .+|.++.+....++.....+.+.++++.|+++++|++..+.+++.+.+.++..+..++.|+++||+ |||++++++.+..
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence            356788888899999999999999999999999999999999999999999999999999999996 9999999999888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++.+++.++.                         +...+++.+.+.+.+.+...+...++..|.+|+++      |++
T Consensus        84 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~  132 (395)
T PRK10054         84 ASGFIAIPLVN-------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTK  132 (395)
T ss_pred             HHHHHHHHHHh-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHH
Confidence            88888777753                         34556667777777777777888888899998877      899


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcc
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQ  274 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (547)
                      ++++.+...++|.+++|.+++++.+ .+|+..|++.++..+++++......++.+  ++++++..+.             
T Consensus       133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~--~~~~~~~~~~-------------  196 (395)
T PRK10054        133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE--KAIATETGSV-------------  196 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc--cccccchhhh-------------
Confidence            9999999999999999999998875 68999999877666665443333222211  1110000000             


Q ss_pred             cCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHH
Q 008953          275 ICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNT  354 (547)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (547)
                                                      ++..                    +..++++.+...+..++.......
T Consensus       197 --------------------------------~~~~--------------------~~~~~~~~~~~~~~~~l~~~~~~~  224 (395)
T PRK10054        197 --------------------------------WSPS--------------------VLLQDKALLWFTCSGFLASFVSGA  224 (395)
T ss_pred             --------------------------------hhhh--------------------hhccCceehHHHHHHHHHHHHHHH
Confidence                                            0000                    000111111111111121212111


Q ss_pred             HHhhhhhhhhhhhhhccccCCCcceeCc---ccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHH
Q 008953          355 ILAQLQTFSVQQGSAMNNKLTKNFHVPP---ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA  431 (547)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~  431 (547)
                      .....+.+...    ..+     .+...   +.+...+.+......+..++    +.+|.       ++++.+.+++.+.
T Consensus       225 ~~~~~~~~~~~----~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~g~----~~~~~-------~~~~~l~~~~~~~  284 (395)
T PRK10054        225 FASCISQYVMV----VAD-----SDFAEKVVAVVLPVNAAMVVSLQYSVGR----RLNAA-------NIRPLMTAGTLCF  284 (395)
T ss_pred             hhhhHHHHHHH----hcc-----cchHHHHHHHHHHhhhhheeeehhHHHH----HHccC-------CchhHHHHHHHHH
Confidence            11111111111    000     01111   11112222222222222222    22232       3445577787777


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 008953          432 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS  511 (547)
Q Consensus       432 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~  511 (547)
                      ++++......             ..+.+.+....+++++|++...|...+++.+.+|++.|+++.+..+ ...+|..+||
T Consensus       285 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp  350 (395)
T PRK10054        285 VIGLVGFIFS-------------GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINP  350 (395)
T ss_pred             HHHHHHHHHc-------------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHH
Confidence            7777666543             1244445567789999999989999999999999999999998765 5668999999


Q ss_pred             HHHHHHHHhh
Q 008953          512 LLVSFVNKVT  521 (547)
Q Consensus       512 ~i~~~l~~~~  521 (547)
                      .+.+.+.+..
T Consensus       351 ~~~G~l~~~~  360 (395)
T PRK10054        351 LVSGVILTTL  360 (395)
T ss_pred             HHHHHHHHHc
Confidence            9999998854

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=5.7e-22  Score=208.21  Aligned_cols=177  Identities=12%  Similarity=0.045  Sum_probs=152.2

Q ss_pred             CcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953           31 NKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF  110 (547)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~  110 (547)
                      .+|..|+.+..+.+..++.....|.....+|.+ .+++|.++.+.++..+.+.++..++.++.|+++||+ ||||.++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~   91 (394)
T PRK10213         14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF   91 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence            445567777777777777777777766666664 567999999999999999999999999999999996 999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953          111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK  190 (547)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~  190 (547)
                      .++..++.+++..+                         .+.+.+++.|+++|++.+...+...+++.|.+|+++     
T Consensus        92 ~~~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-----  141 (394)
T PRK10213         92 AVLLTLSCLLVSFA-------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT-----  141 (394)
T ss_pred             HHHHHHHHHHHHHH-------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH-----
Confidence            99999988888775                         356779999999999999999999999999999887     


Q ss_pred             ccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008953          191 KLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~  240 (547)
                       |+++.++.....++|..++|.+++++.++.|||+.|++.++..+++++.
T Consensus       142 -~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~  190 (394)
T PRK10213        142 -VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW  190 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence             8999999999999999999999999999999999999876554444333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=2.2e-22  Score=216.73  Aligned_cols=396  Identities=12%  Similarity=0.074  Sum_probs=242.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      +..+++..++..+.... .....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.++++.++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTI-VNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            44455555555555444 44445566678999999999999999999999999999999997 99999999999999999


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA  198 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  198 (547)
                      ++++.+                         .+...+++.|+++|++.+...+...+++.|.+|+++      |++++++
T Consensus        82 ~~~~~~-------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~  130 (485)
T TIGR00711        82 LLCGVA-------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAI  130 (485)
T ss_pred             HHHhCc-------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHH
Confidence            988876                         346678899999999999999999999999999877      8999999


Q ss_pred             hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHH-----HHhhhc
Q 008953          199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVA-----AMLKRK  273 (547)
Q Consensus       199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  273 (547)
                      ++....+|..++|.+++++.++.+||+.|++.+...++.++......++.+++  +.++. +.......     ......
T Consensus       131 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-d~~g~~l~~~~~~~~~~~~  207 (485)
T TIGR00711       131 WGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENF-DFLGLLLLSVGLGSLLYGL  207 (485)
T ss_pred             HHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCC-cHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987665555544443333321111  11111 11111000     000000


Q ss_pred             ccCCCCcccccccCCCCCCCCCCccccccchhHhhhhh-hcc---ccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHH
Q 008953          274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKAC-IKV---EDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACT  349 (547)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (547)
                      .. .....|    .            +.+......... ...   ...+...+.|..  +.+..++++.....+..++..
T Consensus       208 ~~-~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  268 (485)
T TIGR00711       208 SE-GPERGW----F------------DSNEILILSITGLVAIIAFVVWELTDDNPLV--DLRLFKYRNFTIGCVYMSLLG  268 (485)
T ss_pred             hh-CCCCCC----C------------CchHHHHHHHHHHHHHHHHHHHHHcCCCCcc--CHHHHcCCChHHHHHHHHHHH
Confidence            00 000000    0            000000000000 000   000000111110  111111111112222222222


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHH
Q 008953          350 IIFNTILAQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL  428 (547)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~  428 (547)
                      ..++......+.+...       ..  ++.. ..+.......++.++..++..++.    +|.       ++++.+.+|.
T Consensus       269 ~~~~~~~~~~p~~~~~-------~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l~----~r~-------~~~~~~~~g~  328 (485)
T TIGR00711       269 LGLYGSFYLLPLYLQQ-------VL--GYTALQAGLHILPVGLAPMLSSPIAGRMG----DKI-------DPRKLVTIGL  328 (485)
T ss_pred             HHHHHHHHHHHHHHHH-------hc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH----hhc-------CcHHHHHHHH
Confidence            2222222222222211       11  1111 112233334445555555555543    343       3335577788


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 008953          429 FLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFY  508 (547)
Q Consensus       429 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~  508 (547)
                      .+.+++..++.....          ...+.+......++.|+|.+...++......+..|+++||+++|+.++.+.+|+.
T Consensus       329 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~  398 (485)
T TIGR00711       329 ILYAVGFYWRAFTFT----------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGS  398 (485)
T ss_pred             HHHHHHHHHHhccCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHH
Confidence            888777776652110          1345555666788999999999888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 008953          509 LSSLLVSFVNK  519 (547)
Q Consensus       509 lg~~i~~~l~~  519 (547)
                      +|+.+.+.+.+
T Consensus       399 ig~~i~g~~~~  409 (485)
T TIGR00711       399 IGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.91  E-value=4.8e-22  Score=209.25  Aligned_cols=358  Identities=13%  Similarity=0.023  Sum_probs=228.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      +|..+....++.+++.+..+......| .+.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~   90 (406)
T PRK11551         13 LALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALF   90 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            345555566666666666665544444 55678999999999999999999999999999999997 9999999999888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++.+++.++                         .+...+++.|++.|++.+...+...+++.|.+|+++      |++
T Consensus        91 ~~~~~~~~~~-------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  139 (406)
T PRK11551         91 GLFSLATAQA-------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT  139 (406)
T ss_pred             HHHHHHHHHh-------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence            8888777775                         345678889999999999999999999999999887      899


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcc
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQ  274 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (547)
                      ++++.+...++|..+++.+++.+.+..+|++.|++.++..++..+......++.++.++++++..               
T Consensus       140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------  204 (406)
T PRK11551        140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK---------------  204 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch---------------
Confidence            99999999999999999999899888899999988665444443333322222111000000000               


Q ss_pred             cCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHH
Q 008953          275 ICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNT  354 (547)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (547)
                                               ..+  ...+..                 ++  ..+.++........+.....++.
T Consensus       205 -------------------------~~~--~~~~~~-----------------~~--~~~~~~~~~~~~~~~~~~~~~~~  238 (406)
T PRK11551        205 -------------------------QRA--PVLRAL-----------------FG--EGRATATLLLWISYFFTLIVLYF  238 (406)
T ss_pred             -------------------------hhh--hhHHHH-----------------hh--hhhhhHHHHHHHHHHHHHHHHHH
Confidence                                     000  000000                 00  00001111111111111222222


Q ss_pred             HHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953          355 ILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS  434 (547)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~  434 (547)
                      ...+.+.+...+  ..+.       ...+.......+..++...+..++.+    |.++       ++.+..+.+..+++
T Consensus       239 ~~~~~p~~~~~~--g~s~-------~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~-------~~~~~~~~~~~~~~  298 (406)
T PRK11551        239 LLNWLPSLLVGQ--GLSR-------SQAGLVQIAFNIGGALGSLLIGALMD----RLRP-------RRVVLLIYAGILAS  298 (406)
T ss_pred             HHHHHHHHHHhC--CCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHH----HHhH-------HHHHHHHHHHHHHH
Confidence            222222222111  1110       11122333333444555555555443    4322       23344455555555


Q ss_pred             HHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          435 MISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV  514 (547)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~  514 (547)
                      ++.....              .+.+.+.+..++.+++.....+...++..|.+|++.|+++.|+.+....+|..+++.+.
T Consensus       299 ~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~  364 (406)
T PRK11551        299 LAALAAA--------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA  364 (406)
T ss_pred             HHHHHhc--------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence            4444332              23444555667778877777888889999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 008953          515 SFVNKV  520 (547)
Q Consensus       515 ~~l~~~  520 (547)
                      +.+.+.
T Consensus       365 g~l~~~  370 (406)
T PRK11551        365 GQLLAL  370 (406)
T ss_pred             hhhhcc
Confidence            988764

>PRK10504 putative transporter; Provisional

Probab=99.91  E-value=5.1e-22  Score=213.39  Aligned_cols=408  Identities=8%  Similarity=-0.009  Sum_probs=242.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      .|.+|.+.+..++..+..+.+..++|.+.. ++|.++.+.+++.+.+.++..++.+++|+++||+ ||||+++.+.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            467788888888888888888888887775 6999999999999999999999999999999997 99999999988888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.+++.++                         .+...+++.|+++|++.+...|...+.+.|.+|+++      |+++
T Consensus        87 ~~~~~~~~~-------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  135 (471)
T PRK10504         87 LGSLFCALS-------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAA  135 (471)
T ss_pred             HHHHHHHHh-------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            888777765                         345668889999999999999999999999999776      8899


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI  275 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (547)
                      +++.+...++|..++|.+++++.++.|||+.|++......++.+......++.+.++.+.+...............-...
T Consensus       136 ~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  215 (471)
T PRK10504        136 MTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALD  215 (471)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999987665555554444433322211111111100000000000000000


Q ss_pred             CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCC-CCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHH
Q 008953          276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGT-NKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNT  354 (547)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (547)
                      ......+                .................... .+...+....+.+-.++++........++..+.+ .
T Consensus       216 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~  278 (471)
T PRK10504        216 GSKGLGL----------------SPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGS-G  278 (471)
T ss_pred             cCCcCCc----------------chHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHH-H
Confidence            0000000                00000000000000000000 0000000000111111121111111111111111 1


Q ss_pred             HHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953          355 ILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS  434 (547)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~  434 (547)
                      .......++..+....+.       ...+.......+..+...++..++    .+|++       +++.+..+.++.+++
T Consensus       279 ~~~~~~~~~~~~~~g~~~-------~~~g~~~~~~~~~~~~~~~~~~~l----~~r~g-------~~~~~~~~~~~~~~~  340 (471)
T PRK10504        279 MLPFMTPVFLQIGLGFSP-------FHAGLMMIPMVLGSMGMKRIVVQV----VNRFG-------YRRVLVATTLGLALV  340 (471)
T ss_pred             HHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHcC-------chHHHHHHHHHHHHH
Confidence            111111222111001000       011112222222233333444443    34443       335566677777766


Q ss_pred             HHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          435 MISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV  514 (547)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~  514 (547)
                      .+++.....           ..+.+.+.+..++.|++.++..+..+..+.+.+|++.++.++|+.++.+.+|..+|+.+.
T Consensus       341 ~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~  409 (471)
T PRK10504        341 SLLFMLVAL-----------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA  409 (471)
T ss_pred             HHHHHhccc-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            665554311           112333445667788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 008953          515 SFVNKVTS  522 (547)
Q Consensus       515 ~~l~~~~~  522 (547)
                      +.+.+..+
T Consensus       410 g~ll~~~g  417 (471)
T PRK10504        410 GLLLGLFG  417 (471)
T ss_pred             HHHHHHhh
Confidence            98877643

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.91  E-value=1.7e-22  Score=224.49  Aligned_cols=156  Identities=15%  Similarity=0.063  Sum_probs=131.1

Q ss_pred             hHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008953           56 VGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKC  135 (547)
Q Consensus        56 ~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  135 (547)
                      +...+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++..++.++++++           
T Consensus       185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa-----------  252 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV-----------  252 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            345556677788999999999999999999999999999999996 99999999999999988888876           


Q ss_pred             CCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHH
Q 008953          136 NMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLV  215 (547)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~  215 (547)
                                    .++..++++|++.|++.++..+...+++.|.+|++.      |++.+++......+|.++++.++.
T Consensus       253 --------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~  312 (742)
T TIGR01299       253 --------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAW  312 (742)
T ss_pred             --------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          346678899999999999999999999999999877      899999988888999999988766


Q ss_pred             Hhhcc-------------cchhhHHHHHHHHHHHHHHHHHH
Q 008953          216 WVQTH-------------SGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       216 ~l~~~-------------~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ++...             .+||+.+++.++..+++++..++
T Consensus       313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~  353 (742)
T TIGR01299       313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF  353 (742)
T ss_pred             HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            55432             35888888877666655554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=4.2e-22  Score=204.44  Aligned_cols=350  Identities=17%  Similarity=0.154  Sum_probs=222.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 008953           43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLS  122 (547)
Q Consensus        43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~  122 (547)
                      ++..++..+........++.++.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++..++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            4455666666666666677688899999999999999999999999999999999997 999999999999998866665


Q ss_pred             HhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhH
Q 008953          123 VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA  202 (547)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  202 (547)
                      ++.                         +.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+..
T Consensus        81 ~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~  129 (352)
T PF07690_consen   81 FAS-------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAG  129 (352)
T ss_dssp             HHC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHH
T ss_pred             hhh-------------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccch
Confidence            542                         33478999999999999999999999999999988      99999999999


Q ss_pred             HhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCccc
Q 008953          203 FSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQM  282 (547)
Q Consensus       203 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (547)
                      .++|..++|.+++++.++.+|++.|++.++..++..+......++.+.++++.++.++.                     
T Consensus       130 ~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------------------  188 (352)
T PF07690_consen  130 FSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE---------------------  188 (352)
T ss_dssp             HHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------------
T ss_pred             hhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc---------------------
Confidence            99999999999999998899999999988777766554333222211111111100000                     


Q ss_pred             ccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHH-hHHHHHHHHHHHHHHHhhhhh
Q 008953          283 LHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLI-SVVPIFACTIIFNTILAQLQT  361 (547)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  361 (547)
                                       ..                   ...++... .+...+.+.++ .....+.....+.......+.
T Consensus       189 -----------------~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (352)
T PF07690_consen  189 -----------------SK-------------------KPKPLKPG-FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPL  231 (352)
T ss_dssp             --------------------------------------HHHCCCH--CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------cc-------------------cccccccc-cccccccchhhhhhhhhhHHHHHHHHhhcccch
Confidence                             00                   00000000 01111112112 111111221222222222222


Q ss_pred             hhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 008953          362 FSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALM  441 (547)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~  441 (547)
                      +. .+....+.      ....+.+.....+...+..++.+++.    +|.++       ++..........++.+.....
T Consensus       232 ~l-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~  293 (352)
T PF07690_consen  232 YL-QEVLGFSG------PSQAGLLFSIFGIVGIIGSLLAGRLS----DRFGR-------RRRLLIAILLLILGALGLLLL  293 (352)
T ss_dssp             HC-CHHHHCCT------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTC-------HHHHHHHHHHHHHHHHHHCCS
T ss_pred             hh-hhccCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCc-------HHHHHHHHHHHHHHHHHHHHH
Confidence            11 11111110      00111222333344444445555443    34322       223444444444434333332


Q ss_pred             HHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 008953          442 EKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS  511 (547)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~  511 (547)
                      ..           ..+..+.....++.|++.+...+...++..+.+|++.||++.|+.++.+++|+.+||
T Consensus       294 ~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  294 PF-----------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HH-----------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            21           124455666778899999999999999999999999999999999999999999986

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.91  E-value=6.5e-22  Score=205.55  Aligned_cols=154  Identities=18%  Similarity=0.165  Sum_probs=120.8

Q ss_pred             hHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008953           56 VGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKC  135 (547)
Q Consensus        56 ~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  135 (547)
                      ......+.+++++|.++.+.+++.+.+.+++.++.++.|+++||+ |||+++..+.+....+. ++....          
T Consensus         9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~-~~~~~~----------   76 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAA-GRLLDP----------   76 (368)
T ss_pred             HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH-HHHHHh----------
Confidence            334455566778999999999999999999999999999999997 99987665544444432 222221          


Q ss_pred             CCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHH
Q 008953          136 NMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLV  215 (547)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~  215 (547)
                                    .++..+++.|+++|+|.+.. ....+.++|.+|+++      |++++++.+.+.++|..+++.+++
T Consensus        77 --------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~  135 (368)
T TIGR00903        77 --------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGL  135 (368)
T ss_pred             --------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          24677999999999999864 455556689999877      999999999999999999999999


Q ss_pred             HhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953          216 WVQTHSGMDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       216 ~l~~~~g~~~~f~~~~~~~~~~l~~~~  242 (547)
                      ++.++.|||+.|++.++..++..+..+
T Consensus       136 ~l~~~~gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903       136 KIYTAGGLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999986665544444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=1.7e-21  Score=203.21  Aligned_cols=169  Identities=15%  Similarity=0.108  Sum_probs=138.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      ++.+....+..+...+..+ ......+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~   93 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFS   93 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHH
Confidence            3444444444444444444 344555666778999999999999999999999999999999997 99999999998888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.+++..+                         .+...+++.+++.|++.+...+...+++.|.+|+++      |++.
T Consensus        94 ~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~  142 (398)
T TIGR00895        94 VFTLLCALA-------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTA  142 (398)
T ss_pred             HHHHHHHHc-------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchh
Confidence            888777765                         245568888999999999999999999999999877      8999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG  237 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~  237 (547)
                      +++.....++|..+++.+++++.+..||++.|++.++..++.
T Consensus       143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  184 (398)
T TIGR00895       143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLL  184 (398)
T ss_pred             HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHH
Confidence            999999999999999999999999999999998875444433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.90  E-value=2.4e-21  Score=202.87  Aligned_cols=173  Identities=16%  Similarity=0.124  Sum_probs=145.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953           33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF  112 (547)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  112 (547)
                      +.+|+.+..+.+..+...+..+.+.... +.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            4556666677777777777666554444 466788999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      +..++.+++.++                         .++..+++.|++.|++.+...+...+++.|.+|+++      |
T Consensus        86 ~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~  134 (405)
T TIGR00891        86 LFSAGTLACGFA-------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------R  134 (405)
T ss_pred             HHHHHHHHHHHh-------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------h
Confidence            888888888775                         346668889999999999999999999999999887      8


Q ss_pred             ccchhhhhhHHhHhHHHHHHHHHHhhcccc--hhhHHHHHHHHHHHHH
Q 008953          193 SSYFNAAYFAFSTGELVALTVLVWVQTHSG--MDVGFGVSAAAMALGL  238 (547)
Q Consensus       193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g--~~~~f~~~~~~~~~~l  238 (547)
                      ++++++.+...++|..+++.+.+.+.+..+  ||+.|++.++..++.+
T Consensus       135 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998887766  9999987655444443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.90  E-value=7.6e-21  Score=202.17  Aligned_cols=176  Identities=16%  Similarity=0.116  Sum_probs=128.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC---CChhhHHHHHHHH---HHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMH---FSLSNSANIVTNF---IGTVFLLALLGGYLSDSFLGSFWTMLIF  110 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~~~~~~~~i~~~~---~~~~~~~~~~~G~laDr~~Gr~~~~~~~  110 (547)
                      +.++...+..+++.+.... ..+..+++.++++   .+..+.+.+.+.+   .++..++.+++|+++||+ ||||++.++
T Consensus        22 ~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~   99 (432)
T PRK10406         22 WAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHH
Confidence            3344444445555555443 5677778888874   4555444444444   444558999999999997 999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953          111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK  190 (547)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~  190 (547)
                      .++..++.++++++.+...                 ........+++.|+++|++.|+..|...+++.|.+|+++     
T Consensus       100 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~-----  157 (432)
T PRK10406        100 VCMMCFGSLVIACLPGYET-----------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR-----  157 (432)
T ss_pred             HHHHHHHHHHHhhcCCchh-----------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc-----
Confidence            9999999999888643110                 000123468889999999999999999999999999887     


Q ss_pred             ccccchhhhhhHHhHhHHHHHHHHHHhh--------cccchhhHHHHHHHHHHHH
Q 008953          191 KLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMDVGFGVSAAAMALG  237 (547)
Q Consensus       191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~~~~~~  237 (547)
                       |++..+..+...+.|..+++.+...+.        ..+|||++|++.++..++.
T Consensus       158 -rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        158 -KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence             888888888888888888887755543        2579999999876654443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=3.5e-21  Score=196.40  Aligned_cols=352  Identities=12%  Similarity=0.062  Sum_probs=246.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953           33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF  112 (547)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  112 (547)
                      +..+..++.+.+..|+....=+.....+|. +.+++|.+..++|+..+.|..+..++.|+...+.||+ .||++++....
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            445677888888888888888877776664 5578999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      ++.++.++++++                         +++..++++|++.++..|.+.+...++.++..|+++      |
T Consensus        87 lFi~~n~l~alA-------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~  135 (394)
T COG2814          87 LFIVSNLLSALA-------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------R  135 (394)
T ss_pred             HHHHHHHHHHHh-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------h
Confidence            999999999998                         567889999999999999999999999999999998      9


Q ss_pred             ccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhh
Q 008953          193 SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKR  272 (547)
Q Consensus       193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (547)
                      +++.++...+..++..+|..++.++.+.+|||..|+..++..+++++..+...|+....++...+.++..+.        
T Consensus       136 ~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~--------  207 (394)
T COG2814         136 GRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRL--------  207 (394)
T ss_pred             hhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHH--------
Confidence            999999999999999999999999999999999999988877777777766555000000111111111100        


Q ss_pred             cccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHH
Q 008953          273 KQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIF  352 (547)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (547)
                                                                                  .++.+........++.....
T Consensus       208 ------------------------------------------------------------l~~p~v~~~l~~t~l~~~g~  227 (394)
T COG2814         208 ------------------------------------------------------------LRRPGVLLGLLATFLFMTGH  227 (394)
T ss_pred             ------------------------------------------------------------hcCchHHHHHHHHHHHHcch
Confidence                                                                        01111112222233333444


Q ss_pred             HHHHhhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHH
Q 008953          353 NTILAQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA  431 (547)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~  431 (547)
                      +..|.+...+..+       ..  +++. ..++......++.+++..+.+++.|    |        ++++.+.....++
T Consensus       228 F~~ftYi~P~L~~-------v~--g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~d----r--------~~~~~l~~~~~l~  286 (394)
T COG2814         228 FALYTYIRPFLES-------VA--GFSVSAVSLVLLAFGIAGFIGNLLGGRLAD----R--------GPRRALIAALLLL  286 (394)
T ss_pred             hhhHHhHHHHHHH-------cc--CCCHhHHHHHHHHHHHHHHHHHHHHhhhcc----c--------cchhHHHHHHHHH
Confidence            4444443332221       11  2211 1233334444555555555554432    2        2345566676777


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 008953          432 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS  511 (547)
Q Consensus       432 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~  511 (547)
                      ++.++.+.+..             .+.+..+...++.+++.....+..+.-..+.. ++.++.+++++....++|..+|.
T Consensus       287 a~~~l~l~~~~-------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA  352 (394)
T COG2814         287 ALALLALTFTG-------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGA  352 (394)
T ss_pred             HHHHHHHHHhc-------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHH
Confidence            77777766652             34444444545544444444444444444433 46799999999999999999999


Q ss_pred             HHHHHHHHh
Q 008953          512 LLVSFVNKV  520 (547)
Q Consensus       512 ~i~~~l~~~  520 (547)
                      .+.+.+.+.
T Consensus       353 ~lGG~v~~~  361 (394)
T COG2814         353 ALGGLVLDA  361 (394)
T ss_pred             HHHHHHHHh
Confidence            999998886

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.90  E-value=9.9e-24  Score=219.84  Aligned_cols=364  Identities=31%  Similarity=0.491  Sum_probs=240.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC
Q 008953          104 FWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ  183 (547)
Q Consensus       104 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~  183 (547)
                      .|+++++.++..+|.+++.+++..+..                .+......+++++++.++|.|+++|++.++++||+++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~----------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~   64 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL----------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDE   64 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC----------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSST
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh----------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcc
Confidence            478999999999999998887653331                2223456789999999999999999999999999998


Q ss_pred             CCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeecc-CCCCCCchh-H
Q 008953          184 SNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNK-RPQGSIFTP-I  261 (547)
Q Consensus       184 ~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~-~  261 (547)
                      +++.+   |.++++++|++.|+|+.+++.+.+++.++.||.+.|.++.+.++++++.++..++.++++ ++.+++..+ .
T Consensus        65 ~~~~~---~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~  141 (372)
T PF00854_consen   65 DDDSR---RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFI  141 (372)
T ss_dssp             TTTTH---HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--S
T ss_pred             cchhh---hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhH
Confidence            75333   889999999999999999999999999999999999999999999999999999888877 677777776 4


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccCCC-CCCCCCCccccccchhHhhhhhhccccCCCCCCCCCcc-ccchhHHHHHHH
Q 008953          262 AQVFVAAMLKRKQICPSNPQMLHGLNQN-NVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRL-CTVTQVEQVKVL  339 (547)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  339 (547)
                      ..++....+++....+....+..+.... ++.......      .........     ......|.. ++.++.+..+.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~k~~  210 (372)
T PF00854_consen  142 KLVLVAAFKKRKLAVPKGSSWLDWALFQYSERSIFGII------VFIRAAVIF-----FPEIFFWALFCQVQRVEELKAL  210 (372)
T ss_dssp             HHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCCCC------CHHHHHHHH-----CCCHHHHTTTSSTTTHHHCCHH
T ss_pred             HHHHHHHHHHhhcccccchHHHHHhhhhhhhhhhhhhh------hhccchhhh-----hhhhhhcccCCccceeeeeeee
Confidence            4455555555544333222222111000 000000000      000000000     000001111 233455566666


Q ss_pred             HhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCc-ceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCC
Q 008953          340 ISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN-FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGI  418 (547)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~  418 (547)
                      .+.+..+.+.+.++.++.+.......|...++..+. + +.+|+..+++++.+.++++.|+.+++++|+.++ +++   .
T Consensus       211 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~  285 (372)
T PF00854_consen  211 IRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---P  285 (372)
T ss_dssp             HCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT--------
T ss_pred             eeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---c
Confidence            777777777788888888888877778777776666 7 789999999999999999999999999998872 222   4


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH
Q 008953          419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM  498 (547)
Q Consensus       419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~  498 (547)
                      ++..++.+|++++.+++++....+.+|.....+ .+..+.+|.+..+++.+++|.+..+...+..+|.+|++..+..+|+
T Consensus       286 ~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~  364 (372)
T PF00854_consen  286 SPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQP-CGKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGI  364 (372)
T ss_dssp             --HHHHHHH-HHHHHHHHTTTHHHH---HH-----TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccc-cCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHH
Confidence            788899999999999999999888766544432 3344447777999999999999999999988888888777777777


Q ss_pred             HHHHH
Q 008953          499 TYCSY  503 (547)
Q Consensus       499 ~~~~~  503 (547)
                      +....
T Consensus       365 ~~~~~  369 (372)
T PF00854_consen  365 WFALS  369 (372)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.89  E-value=1.1e-20  Score=199.11  Aligned_cols=342  Identities=13%  Similarity=0.053  Sum_probs=214.0

Q ss_pred             HHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008953           53 IAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKP  132 (547)
Q Consensus        53 ~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~  132 (547)
                      .....+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||.+.++.++..++.+++..+        
T Consensus        29 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~--------   98 (406)
T PRK15402         29 NDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA--------   98 (406)
T ss_pred             hhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH--------
Confidence            3333344443 4578999999999999999999999999999999997 99999999998888888887775        


Q ss_pred             CCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHH
Q 008953          133 PKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALT  212 (547)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~  212 (547)
                                       ++...+++.|++.|++.+...+...+.+.|.+|+++      |.+..++......+|..++|.
T Consensus        99 -----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~  155 (406)
T PRK15402         99 -----------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPL  155 (406)
T ss_pred             -----------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHH
Confidence                             345668888999999998888888889999999877      777888887777889999999


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCC
Q 008953          213 VLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVP  292 (547)
Q Consensus       213 i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (547)
                      +++++.++.+|++.|++.++..++..+..+...++.+++++++.+..+                                
T Consensus       156 i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  203 (406)
T PRK15402        156 VGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKE--------------------------------  203 (406)
T ss_pred             HHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHH--------------------------------
Confidence            999999988999999887766655554443322221110000000000                                


Q ss_pred             CCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 008953          293 NDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNN  372 (547)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (547)
                                   ..+..+                   ...++++.+...+...+............+.+.... ...+.
T Consensus       204 -------------~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~g~~~  250 (406)
T PRK15402        204 -------------LGRDYK-------------------LVLKNRRFVAGALALGLVSLPLLAWIALSPVILISG-EQLSS  250 (406)
T ss_pred             -------------HHHHHH-------------------HHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCCH
Confidence                         000000                   000111111111111111111111111112111110 00000


Q ss_pred             cCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 008953          373 KLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDS  452 (547)
Q Consensus       373 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~  452 (547)
                      .       ..+.......++.++..++.+++    .+|.       +.++.+.++.++.+++.+........        
T Consensus       251 ~-------~~g~~~~~~~~~~~~g~~~~g~l----~~r~-------~~~~~~~~~~~~~~~g~~~~~~~~~~--------  304 (406)
T PRK15402        251 Y-------EYGLLQVPVFGALIAGNLTLARL----TSRR-------PLRSLIRMGLWPMVAGLLLAALATVI--------  304 (406)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHH----HHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence            0       00111111122333334444433    2342       33455777877777777766654210        


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008953          453 GKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  520 (547)
Q Consensus       453 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~  520 (547)
                       ...+.+++++..++.++|.+...+..+...... ++++||+..+++++.+.+|+.+|+.+.+.+.+.
T Consensus       305 -~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        305 -SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             -ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence             022456677788899999999887776665544 458999999999999999999999999987663

>PRK09952 shikimate transporter; Provisional

Probab=99.89  E-value=4.3e-20  Score=196.73  Aligned_cols=175  Identities=10%  Similarity=0.048  Sum_probs=127.2

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc--CCChhhHHHHH-----HHHHHHHHHHHhhhhHHhhcccchHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEM--HFSLSNSANIV-----TNFIGTVFLLALLGGYLSDSFLGSFWTML  108 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g~~~~~~~~i~-----~~~~~~~~~~~~~~G~laDr~~Gr~~~~~  108 (547)
                      +|.++...+..+++.+.........+.++.+++  +.++.+ +++.     ++..++..++.++.|+++||+ |||+++.
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~   98 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHH
Confidence            455566666666666666554444555666655  666653 4442     233445667888899999997 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccc
Q 008953          109 IFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQ  188 (547)
Q Consensus       109 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~  188 (547)
                      ++.++..++.++++++.+...                 ........+++.|+++|++.|+..+...+++.|.+|+++   
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---  158 (438)
T PRK09952         99 LTVWMMGIATALIGLLPSFST-----------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK---  158 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcHHH-----------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC---
Confidence            999999999999998743111                 000112357889999999999999999999999999887   


Q ss_pred             ccccccchhhhhhHHhHhHHHHHHHHHHhh--------cccchhhHHHHHHHHHH
Q 008953          189 SKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMDVGFGVSAAAMA  235 (547)
Q Consensus       189 ~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~~~~  235 (547)
                         |+...+....+..+|..++..+..++.        .++|||++|++.++..+
T Consensus       159 ---rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        159 ---KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence               888888888888888888877766654        35799999998765543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.89  E-value=7.9e-21  Score=200.75  Aligned_cols=175  Identities=10%  Similarity=-0.021  Sum_probs=145.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      +|+.++.+.+..+++.+....+ ....+.+++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence            4566666666555555555544 4455588999999999999999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++.++++++.                         +...+++.|++.|++.+...|...+++.|.+|+++      |++
T Consensus        84 ~~~~~~~~~~~-------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~  132 (412)
T TIGR02332        84 GIASTATMFAT-------------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RAR  132 (412)
T ss_pred             HHHHHHHHHhc-------------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHH
Confidence            99999998863                         45678899999999999998888888999999877      899


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhc------ccchhhHHHHHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQT------HSGMDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~------~~g~~~~f~~~~~~~~~~l~~~~  242 (547)
                      .+++++...++|..+++.+++++.+      ..|||+.|++.++..++..+..+
T Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~  186 (412)
T TIGR02332       133 ANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998863      36899999987666554433333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.89  E-value=3.1e-21  Score=200.37  Aligned_cols=154  Identities=14%  Similarity=0.105  Sum_probs=135.0

Q ss_pred             HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953           58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM  137 (547)
Q Consensus        58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  137 (547)
                      ....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++             
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~-------------   79 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA-------------   79 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence            4445568889999999999999999999999999999999997 99999999999999888888876             


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh
Q 008953          138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV  217 (547)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l  217 (547)
                                  .+...++++|++.|++.+...+...+++.|.+|+++      |++.+++.....++|..++|.+.+++
T Consensus        80 ------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l  141 (399)
T TIGR00893        80 ------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWI  141 (399)
T ss_pred             ------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHH
Confidence                        346778999999999999999999999999999877      89999999999999999999999999


Q ss_pred             hcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          218 QTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       218 ~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      .+..+|++.|++.++..++..+..+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (399)
T TIGR00893       142 LIHFSWQWAFIIEGVLGIIWGVLWLK  167 (399)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHHhhh
Confidence            98899999999876665554444333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.89  E-value=4.7e-21  Score=198.21  Aligned_cols=338  Identities=12%  Similarity=0.042  Sum_probs=212.2

Q ss_pred             HHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008953           53 IAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKP  132 (547)
Q Consensus        53 ~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~  132 (547)
                      .|.. ..+.+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++        
T Consensus        19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~--------   88 (377)
T TIGR00890        19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA--------   88 (377)
T ss_pred             Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH--------
Confidence            4443 4556778889999999999999999999999999999999997 99999999999999999888887        


Q ss_pred             CCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHH
Q 008953          133 PKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALT  212 (547)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~  212 (547)
                                       .+...++++|++.|++.+...+.....+.+.+|+ +      |+++.++.....++|..+++.
T Consensus        89 -----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~~~~  144 (377)
T TIGR00890        89 -----------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIGGYGLGSFILSP  144 (377)
T ss_pred             -----------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHHhcchhHhHHHH
Confidence                             3567788999999999988777777777887763 4      788899998888999887776


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCC
Q 008953          213 VLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVP  292 (547)
Q Consensus       213 i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (547)
                      +.+.+.+..|||+.|++.++..++..+..+...++.++++.+++.                     +           . 
T Consensus       145 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-----------~-  191 (377)
T TIGR00890       145 LITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI---------------------E-----------V-  191 (377)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc---------------------c-----------c-
Confidence            777777778999999987766555444333322111100000000                     0           0 


Q ss_pred             CCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 008953          293 NDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNN  372 (547)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (547)
                             ...+....                       +..++++.+......+............. ..+. +  ..  
T Consensus       192 -------~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~--  235 (377)
T TIGR00890       192 -------SVKDYTVW-----------------------EMLRTPQFWVLYLSFFLNAVSGLLLIGLY-KPYG-Q--SL--  235 (377)
T ss_pred             -------chhhhhHH-----------------------HHHcCccHHHHHHHHHHHhHHHHHHHHHH-HHHH-H--Hc--
Confidence                   00000000                       00011111111111111111111111101 1111 1  10  


Q ss_pred             cCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008953          373 KLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALD  451 (547)
Q Consensus       373 ~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~  451 (547)
                          +... ..+.+.....+..++..++..++.|    |.++|       +.+.++.++.+++.+......         
T Consensus       236 ----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~-------~~~~~~~~~~~~~~~~~~~~~---------  291 (377)
T TIGR00890       236 ----GLSDGFLVLAVSISSIFNGGGRPFLGALSD----KIGRQ-------KTMSIVFGISAVGMAAMLFIP---------  291 (377)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhh-------hhhhHHHHHHHHHHHHHHHcc---------
Confidence                1110 0122233344445555555555544    43322       336667777777766655432         


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008953          452 SGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  520 (547)
Q Consensus       452 ~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~  520 (547)
                         ..+........++.+++.+...+....+..|..|+++|++..|+.+....+|+.+++.+.+.+.+.
T Consensus       292 ---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  357 (377)
T TIGR00890       292 ---MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE  357 (377)
T ss_pred             ---cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               112222333445667777766666777889999999999999999999999999999999988764

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.89  E-value=2e-20  Score=196.41  Aligned_cols=340  Identities=14%  Similarity=0.069  Sum_probs=217.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 008953           44 GLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSV  123 (547)
Q Consensus        44 ~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~  123 (547)
                      ++..+.+..++.+.+.+| .+.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++++
T Consensus        16 ~~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~   93 (393)
T PRK09705         16 LIGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMREL   93 (393)
T ss_pred             HHHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHH
Confidence            333333444455555555 56678999999999999999999999999999999997 9999999999999999999998


Q ss_pred             hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHH
Q 008953          124 QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAF  203 (547)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  203 (547)
                      +.                         ++..++++|+++|+|.+...+...+++.+.+| ++      |+++++++..+.
T Consensus        94 a~-------------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~  141 (393)
T PRK09705         94 YP-------------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAAL  141 (393)
T ss_pred             Cc-------------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHH
Confidence            73                         45568889999999999999888899899887 55      888999999999


Q ss_pred             hHhHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCccc
Q 008953          204 STGELVALTVLVWVQTHS-GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQM  282 (547)
Q Consensus       204 ~ig~~~~~~i~~~l~~~~-g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (547)
                      +.|..+++.+++++.++. +||+.+...++..++.++..+...++   ++.++++                   + .   
T Consensus       142 ~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------~-~---  195 (393)
T PRK09705        142 MGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR---EVASSHK-------------------T-T---  195 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC---CCccccC-------------------C-C---
Confidence            999999999999988875 79988766544444333333221111   1100000                   0 0   


Q ss_pred             ccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhh
Q 008953          283 LHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTF  362 (547)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (547)
                                       .                      .+.+     ..++++.+...+...+....++....+.+.+
T Consensus       196 -----------------~----------------------~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~  231 (393)
T PRK09705        196 -----------------T----------------------TPVR-----VVFTPRAWTLGVYFGLINGGYASLIAWLPAF  231 (393)
T ss_pred             -----------------c----------------------CCcc-----cccCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             0                      0000     0011111111112222333333443444433


Q ss_pred             hhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008953          363 SVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALME  442 (547)
Q Consensus       363 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~  442 (547)
                      ..++  ..+.       ...+.......++.++..++.+++    .+|.++       ++.+.+++.+.+++...+....
T Consensus       232 l~~~--g~s~-------~~ag~~~~~~~i~~i~g~~~~g~l----~~r~~~-------~~~~~~~~~l~~~~~~~~~~~~  291 (393)
T PRK09705        232 YIEI--GASA-------QYSGSLLALMTLGQAAGALLMPAM----ARHQDR-------RKLLMLALVLQLVGFCGFIWLP  291 (393)
T ss_pred             HHHc--CCCh-------hhhhHHHHHHHHHHHHHHHHHHHH----Hhhccc-------hHHHHHHHHHHHHHHHHHHHcc
Confidence            3211  1111       011222233334444444444433    334332       2446667777666666554331


Q ss_pred             HHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008953          443 KKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT  521 (547)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~-p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~  521 (547)
                                   .+...+  ..++.+++.+...|.......+.. |++.+|+..|+.+....++..+++.+.+++.+.+
T Consensus       292 -------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~  356 (393)
T PRK09705        292 -------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS  356 (393)
T ss_pred             -------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         111111  234567777777777776767777 4688999999999999999999999999999865


Q ss_pred             c
Q 008953          522 S  522 (547)
Q Consensus       522 ~  522 (547)
                      +
T Consensus       357 g  357 (393)
T PRK09705        357 G  357 (393)
T ss_pred             C
Confidence            4

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.89  E-value=3.3e-20  Score=192.61  Aligned_cols=169  Identities=14%  Similarity=0.058  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHH-HHHHHHHHHHHH
Q 008953           43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLI-FGFVELSGFILL  121 (547)
Q Consensus        43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~-~~~~~~i~~~l~  121 (547)
                      ++..++..++.....+.++.|+++++|.++.+.+++.+.+.+...+..++.|+++||+ ||||.++. +.+...++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            3456777777788889999999999999999999999999999999999999999997 99887665 444445566666


Q ss_pred             HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc--hhhh
Q 008953          122 SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY--FNAA  199 (547)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~  199 (547)
                      +.+                         +++..+++.|++.+.+.+...|...++..|..|+++      |...  .+..
T Consensus        82 ~~~-------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~  130 (375)
T TIGR00899        82 AWN-------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVM  130 (375)
T ss_pred             Hhc-------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHH
Confidence            664                         345567777888877777777777777788776554      4433  5677


Q ss_pred             hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +...++|..++|.+++++.+..|||+.|++.++..++..+..+.
T Consensus       131 ~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       131 RAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            77789999999999999999899999999877765555444433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.89  E-value=3.1e-20  Score=200.68  Aligned_cols=175  Identities=12%  Similarity=-0.003  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhh-HHH-----HHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSN-SAN-----IVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF  110 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~-~~~-----i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~  110 (547)
                      +.++...+..+++.+.+. +..+..+++.++++.+..+ ..+     +.++..++..++.++.|+++||+ |||+++.++
T Consensus        16 ~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~   93 (490)
T PRK10642         16 KAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAIT   93 (490)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence            444555556666655444 4556667888888654422 122     24666788889999999999997 999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953          111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK  190 (547)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~  190 (547)
                      .+++.+++++++++.++..+                 ....+..+++.|+++|++.|+..+...+++.|.+|+++     
T Consensus        94 ~~l~~i~~~~~a~~~~~~~~-----------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~-----  151 (490)
T PRK10642         94 IVIMSISTFCIGLIPSYATI-----------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK-----  151 (490)
T ss_pred             HHHHHHHHHHHHhcccHHHH-----------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-----
Confidence            99999999999987431110                 00111247889999999999999999999999999888     


Q ss_pred             ccccchhhhhhHHhHhHHHHHHHHHHhh--------cccchhhHHHHHHHHHHH
Q 008953          191 KLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMDVGFGVSAAAMAL  236 (547)
Q Consensus       191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~~~~~  236 (547)
                       |++..++...+.++|..+++.+..++.        .++|||+.|++.++..++
T Consensus       152 -Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        152 -RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence             888888888777788887776654432        257999999986654443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.89  E-value=3.4e-20  Score=193.13  Aligned_cols=175  Identities=15%  Similarity=0.046  Sum_probs=144.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      +|.++.+.+..+..........+.+| ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   81 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA   81 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence            34455555555555555554445444 55678999999999999999999999999999999997 99999999999988


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.+++..+                         .+...+++.|++.|++.+...+...+++.|.+|+++      |++.
T Consensus        82 ~~~~~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  130 (385)
T TIGR00710        82 LSSLGLALS-------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRI  130 (385)
T ss_pred             HHHHHHHHH-------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHH
Confidence            888888776                         345668889999999999999999999999999877      8999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +++.+...++|..++|.+++++.++.+|++.|++.++..++..+..+.
T Consensus       131 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       131 YSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999899999998876655555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.89  E-value=7.8e-21  Score=196.70  Aligned_cols=151  Identities=13%  Similarity=0.023  Sum_probs=130.8

Q ss_pred             HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953           58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM  137 (547)
Q Consensus        58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  137 (547)
                      ....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.+++.++.            
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------   81 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------   81 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------
Confidence            3344577888999999999999999999999999999999997 999999999999999998888863            


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHH-HHHHH
Q 008953          138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVAL-TVLVW  216 (547)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~-~i~~~  216 (547)
                                   +...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++| .+++.
T Consensus        82 -------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~  142 (379)
T TIGR00881        82 -------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFG  142 (379)
T ss_pred             -------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHH
Confidence                         45678899999999999999999999999999887      89999999999999999999 57777


Q ss_pred             hhcccchhhHHHHHHHHHHHHHHH
Q 008953          217 VQTHSGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       217 l~~~~g~~~~f~~~~~~~~~~l~~  240 (547)
                      +.+..+|++.|++.++..++..+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~  166 (379)
T TIGR00881       143 IAELYSWHWVFIVPGIIAIIVSLI  166 (379)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHH
Confidence            777889999998776655444333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.89  E-value=1.8e-20  Score=198.52  Aligned_cols=165  Identities=14%  Similarity=0.057  Sum_probs=141.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      ++.+....+..+...+..+.. .+..+++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~   94 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            455555566666666665544 5555667788999999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.++++++                         .+...++++|++.|++.+...+...+++.|.+|+++      |+++
T Consensus        95 ~~~~~~~~~-------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~  143 (426)
T PRK12307         95 VGTGLSGLA-------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKA  143 (426)
T ss_pred             HHHHHHHHH-------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHh
Confidence            999888886                         346678999999999999999999999999999887      8999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAA  233 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~  233 (547)
                      .++...+.++|.++++.+.+++.+..+||+.|++.+..
T Consensus       144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            99999999999999999999999989999999875443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.89  E-value=1.3e-20  Score=199.29  Aligned_cols=356  Identities=13%  Similarity=0.075  Sum_probs=223.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      +..+.+..++..+........+|.+. ++++.++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~   96 (417)
T PRK10489         19 FRAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGF   96 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHH
Confidence            33445556666666655556666665 45788999999999999999999999999999997 99999998877777766


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA  198 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  198 (547)
                      +++.......                    .++...+++.|++.|++.+...+...+.+.|.+|+++      |+++.++
T Consensus        97 ~~~~~~~~~~--------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  150 (417)
T PRK10489         97 IGLALNAFLP--------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI  150 (417)
T ss_pred             HHHHHHHHcC--------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence            6554321100                    1345667788999999888877888888999999877      8889999


Q ss_pred             hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCC
Q 008953          199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPS  278 (547)
Q Consensus       199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (547)
                      .+...++|..+||.+++++.+..+|++.|++.++..+++.+..+..+ +.   ++++++..+..+               
T Consensus       151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~~~~~~~~~~---------------  211 (417)
T PRK10489        151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLP-AL---PPPPQPREHPLR---------------  211 (417)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC-CC---CCCCcccccchH---------------
Confidence            98999999999999999999888999999887666555544443321 11   111000000000               


Q ss_pred             CcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 008953          279 NPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQ  358 (547)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (547)
                                                +..+.               ++    ...+++ .+...+...+...........
T Consensus       212 --------------------------~~~~~---------------~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~  245 (417)
T PRK10489        212 --------------------------SLLAG---------------FR----FLLASP-VVGGIALLGGLLTMASAVRVL  245 (417)
T ss_pred             --------------------------HHHHH---------------HH----HHHcCh-HHHHHHHHHHHHHHHHhHHHh
Confidence                                      00000               00    000001 111111111111111111111


Q ss_pred             hhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHH
Q 008953          359 LQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMIS  437 (547)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~  437 (547)
                      .+.+.       +...  +.+. ..+.+.....++.++...+.+++    .+|.       ++.+.+..+.++.+++++.
T Consensus       246 ~p~~~-------~~~~--g~~~~~~g~~~~~~~~g~~ig~~~~~~l----~~~~-------~~~~~l~~~~~~~~~~~~~  305 (417)
T PRK10489        246 YPALA-------DEVW--QMGAAQIGLLYAAVPLGAALGALTSGWL----AHSA-------RPGLLMLLSTLGSFLAVGL  305 (417)
T ss_pred             hHHHH-------Hhcc--CCChhHhHHHHHHHHHHHHHHHHHHHHh----hhcc-------CcchHHHHHHHHHHHHHHH
Confidence            11111       1111  1111 12223333334444444444433    2221       2233466677777777665


Q ss_pred             HHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          438 AALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  517 (547)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l  517 (547)
                      +...              .+.+...+..++.|++.+...+...++..+..|++.||+++|+++..+.+|..+|+.+.+++
T Consensus       306 ~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l  371 (417)
T PRK10489        306 FGLM--------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGL  371 (417)
T ss_pred             HHcc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Confidence            5543              24455566777888888888888888999999999999999999999999999999999999


Q ss_pred             HHhh
Q 008953          518 NKVT  521 (547)
Q Consensus       518 ~~~~  521 (547)
                      .+..
T Consensus       372 ~~~~  375 (417)
T PRK10489        372 GAMM  375 (417)
T ss_pred             HHHh
Confidence            8753

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.88  E-value=6.3e-21  Score=204.86  Aligned_cols=152  Identities=11%  Similarity=-0.019  Sum_probs=125.2

Q ss_pred             HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008953           59 NLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMV  138 (547)
Q Consensus        59 ~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  138 (547)
                      ...+.+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.++++....            
T Consensus        50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~------------  116 (467)
T PRK09556         50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG------------  116 (467)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh------------
Confidence            345567789999999999999999999999999999999997 9999998888877776666554310            


Q ss_pred             CCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhh
Q 008953          139 TDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ  218 (547)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~  218 (547)
                              ....+...+++.|++.|++.+...|...+++.|++|+++      |+++++++..+.++|.++++.+..++.
T Consensus       117 --------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        117 --------SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             --------cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHH
Confidence                    001457778999999999999999999999999999988      999999999999999999999887776


Q ss_pred             ccc---chhhHHHHHHHHHHHH
Q 008953          219 THS---GMDVGFGVSAAAMALG  237 (547)
Q Consensus       219 ~~~---g~~~~f~~~~~~~~~~  237 (547)
                      ...   +|+..|.+.++..++.
T Consensus       183 ~~~~~~~~~~~f~~~g~~~~~~  204 (467)
T PRK09556        183 NYFFDGHVIGMFIFPSIIALII  204 (467)
T ss_pred             HhhccCcchhHHHHHHHHHHHH
Confidence            543   5888887766554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.88  E-value=1.9e-20  Score=196.97  Aligned_cols=355  Identities=12%  Similarity=0.059  Sum_probs=224.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhh-----HHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSN-----SANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFG  111 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~-----~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~  111 (547)
                      |.+..+.+..++..+.+....+.+|.|.+ ++|.+..+     .+++.+.+.+...++.++.|+++||+ |||+.+..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~   91 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA   91 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence            55666777778888888888888888886 48888665     37888899999999999999999997 9999999998


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953          112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK  191 (547)
Q Consensus       112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~  191 (547)
                      ++..++.+++...                         .+...+++.|++.|++.+ ..+...+.+.|.+|+++      
T Consensus        92 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------  139 (408)
T PRK09874         92 LGMGIVMVLMGLA-------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------  139 (408)
T ss_pred             HHHHHHHHHHHHH-------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------
Confidence            8888888777765                         345668889999998765 45677778889998777      


Q ss_pred             cccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhh
Q 008953          192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLK  271 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (547)
                      |++..++.+...++|..++|.+++.+.+..+|++.|++.++..++..+..+...++.+. +.++++..+           
T Consensus       140 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------  207 (408)
T PRK09874        140 SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ-PVSKKEMLH-----------  207 (408)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc-cccchhhhH-----------
Confidence            88999999999999999999999999988999999998776655554443332221110 000000000           


Q ss_pred             hcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHH
Q 008953          272 RKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII  351 (547)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (547)
                                                        ..+...               ..     ++++.....+   .....
T Consensus       208 ----------------------------------~~~~~~---------------~~-----~~~~~~~~~~---~~~~~  230 (408)
T PRK09874        208 ----------------------------------MREVVT---------------SL-----KNPKLVLSLF---VTTLI  230 (408)
T ss_pred             ----------------------------------HHHHHH---------------hC-----cCCchHHHHH---HHHHH
Confidence                                              000000               00     0000011111   00111


Q ss_pred             HHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHH
Q 008953          352 FNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA  431 (547)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~  431 (547)
                      ..............+......... ......+.+.....+..++..+..+++.    +|.++|       +.+..+..+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~l~~~~~~~~~g~l~----dr~g~~-------~~~~~~~~~~  298 (408)
T PRK09874        231 IQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVPGVAALLSAPRLGKLG----DRIGPE-------KILITALIFS  298 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccccc-------hhHHHHHHHH
Confidence            111111111111100000000000 0000001111222233344444444443    343322       3455666666


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 008953          432 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS  511 (547)
Q Consensus       432 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~  511 (547)
                      +++.+.....              .+.+.+.+..++.|++.+...|...+...+..|++.||+..++++....+|..+|+
T Consensus       299 ~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp  364 (408)
T PRK09874        299 VLLLIPMSFV--------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGP  364 (408)
T ss_pred             HHHHHHHHHh--------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhH
Confidence            5555544443              24455566677889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 008953          512 LLVSFVNKV  520 (547)
Q Consensus       512 ~i~~~l~~~  520 (547)
                      .+.+.+.+.
T Consensus       365 ~~~G~l~~~  373 (408)
T PRK09874        365 LMGAAISAN  373 (408)
T ss_pred             HHHHHHHhh
Confidence            999988763

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.88  E-value=3.8e-20  Score=196.96  Aligned_cols=166  Identities=15%  Similarity=0.049  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      ++..++..++..+..+.....+|.+. +++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~  102 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIIN  102 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHH
Confidence            33344444444444445555565554 56999999999999999999999999999999997 99999999999999998


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA  198 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  198 (547)
                      ++++.+                         .+...+++.|++.|++.|...+...+++.|++|+++      |++++++
T Consensus       103 ~~~~~~-------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~  151 (434)
T PRK11663        103 ILFGFS-------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAI  151 (434)
T ss_pred             HHHHHH-------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHH
Confidence            888876                         345667888999999999888888999999999877      8999999


Q ss_pred             hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953          199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG  237 (547)
Q Consensus       199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~  237 (547)
                      ++...++|..++|.+.+++.+++|||+.|++.++..++.
T Consensus       152 ~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        152 WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876654433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.88  E-value=6.6e-20  Score=187.39  Aligned_cols=324  Identities=18%  Similarity=0.162  Sum_probs=241.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953           40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI  119 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~  119 (547)
                      +.+.+..++..+..+......+.|.. ++|.+..+.+++.+...++..++.++.|+++||+ ||||.+.++.++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            34566677778888877777887775 5799999999999999999999999999999997 999999999999999988


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953          120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA  199 (547)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  199 (547)
                      ++...                         .+...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.
T Consensus        80 ~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  128 (352)
T cd06174          80 LLAFA-------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLF  128 (352)
T ss_pred             HHHHh-------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHH
Confidence            88876                         346678899999999999999999999999999887      99999999


Q ss_pred             hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCC
Q 008953          200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSN  279 (547)
Q Consensus       200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (547)
                      +...++|..++|.+.+++.+..+|++.|++.++..++..+......             +.                   
T Consensus       129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-------------------  176 (352)
T cd06174         129 SAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RL-------------------  176 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HH-------------------
Confidence            9999999999999999999988999999987766655544443311             00                   


Q ss_pred             cccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 008953          280 PQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL  359 (547)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (547)
                                                                                .....+..+.............
T Consensus       177 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  198 (352)
T cd06174         177 ----------------------------------------------------------LLLLALAFFLLSFGYYGLLTYL  198 (352)
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHHhHHHHHHHHH
Confidence                                                                      0000111111111112222222


Q ss_pred             hhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhH-HHHHHHHHHHHHHHHH
Q 008953          360 QTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQ-RIGFGLFLATFSMISA  438 (547)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~-~i~~g~~l~~i~~~~~  438 (547)
                      +...... ...+       ....+.......+...+..++..++.    +|.++|       + .+..+..+..++.+..
T Consensus       199 ~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~i~~~~~  259 (352)
T cd06174         199 PLYLQEV-LGLS-------AAEAGLLLSLFGLGGILGALLGGLLS----DRLGRR-------RLLLLIGLLLAALGLLLL  259 (352)
T ss_pred             HHHHHHh-cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhh-------hHHHHHHHHHHHHHHHHH
Confidence            2211110 0000       11122333444455555666655543    344333       3 5777888888888777


Q ss_pred             HHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          439 ALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  518 (547)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~  518 (547)
                      ...+              +.+...+..++.+++.+...+...++..|..|+++|++.+|+.+..+.+|+.+++.+.+.+.
T Consensus       260 ~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~  325 (352)
T cd06174         260 ALAP--------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL  325 (352)
T ss_pred             HHhc--------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7642              46667788899999999999999999999999999999999999999999999999999887


Q ss_pred             H
Q 008953          519 K  519 (547)
Q Consensus       519 ~  519 (547)
                      +
T Consensus       326 ~  326 (352)
T cd06174         326 D  326 (352)
T ss_pred             c
Confidence            6

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.88  E-value=5.1e-20  Score=192.60  Aligned_cols=172  Identities=9%  Similarity=0.032  Sum_probs=147.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.++.+++..+......+...+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            56677777777777777777676655 5678999999999999999999999999999999997 999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +.++++.+                         ++.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+
T Consensus        81 ~~~l~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~  129 (382)
T PRK10091         81 GNAMFTLS-------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAV  129 (382)
T ss_pred             HHHHHHHh-------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHH
Confidence            99988886                         356778999999999999888888888899988776      78889


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGV  241 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~  241 (547)
                      +++..+..+|..++|.+++++.+..+||+.|++.++..++..+..
T Consensus       130 ~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~  174 (382)
T PRK10091        130 AGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI  174 (382)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence            998888999999999999999998999999998776555544433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.88  E-value=7.8e-20  Score=191.09  Aligned_cols=158  Identities=12%  Similarity=0.121  Sum_probs=137.2

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      .|.++.+++..++..+....+.+.+|.|.. ++|.|..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            467888999999988888888888888886 5899999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.+.++.+                         ++...++++|++.|++.+...+...+.+.+..++++      |++.
T Consensus        83 ~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~  131 (381)
T PRK03633         83 AGCAGLGLM-------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRL  131 (381)
T ss_pred             HHHHHHHHh-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence            888888776                         346678889999999999888887777788888766      8999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVG  226 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~  226 (547)
                      +++++...++|..+||.+++++.+...+...
T Consensus       132 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  162 (381)
T PRK03633        132 LAAYMMVYYLGTVLGQLLVSKVSTELMSVLP  162 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence            9999999999999999999998776434333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.88  E-value=7.9e-20  Score=191.94  Aligned_cols=164  Identities=20%  Similarity=0.170  Sum_probs=136.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |+++.+.+..++..+........++.. .+++|.++.+.+++.+.+.+...+..+++|+++||+ ||||+++++.++..+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence            456677777777777665555555544 578999999999999999999999999999999997 999999999999988


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +.+++....+                            .++.|+++|++.++..|...+++.|.+|+++      |+++.
T Consensus        81 ~~~~~~~~~~----------------------------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~  126 (393)
T PRK11195         81 GCLLMLFGIH----------------------------PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKAN  126 (393)
T ss_pred             HHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence            8877766422                            2677899999999999999999999999887      99999


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG  237 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~  237 (547)
                      ++.....++|..+||.++|++.+. .|+..+.+.+...+++
T Consensus       127 ~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        127 GWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999875 4776666655443333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.87  E-value=2.3e-20  Score=200.80  Aligned_cols=154  Identities=17%  Similarity=0.050  Sum_probs=122.9

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccc
Q 008953           69 HFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAK  148 (547)
Q Consensus        69 g~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (547)
                      +.+..+.+++.+.+.++..++.++.|+++||+ ||||+++++.+++.++.++++++..+-.-             ....+
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~-------------~~~~~  116 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTS-------------IGPDN  116 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccc-------------ccccc
Confidence            88899999999999999999999999999997 99999999999988888777763210000             00011


Q ss_pred             cchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhh--------cc
Q 008953          149 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------TH  220 (547)
Q Consensus       149 ~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~  220 (547)
                      .+....++++|+++|++.|+..+...++++|.+|+++      |++++++......+|..+++.+++.+.        +.
T Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  190 (479)
T PRK10077        117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT  190 (479)
T ss_pred             hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence            2335668899999999999999999999999999888      999999999989999999887765543        45


Q ss_pred             cchhhHHHHHHHHHHHHHHHHH
Q 008953          221 SGMDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       221 ~g~~~~f~~~~~~~~~~l~~~~  242 (547)
                      .|||+.|++.++..++.++..+
T Consensus       191 ~gWr~~f~~~~~~~~~~~~~~~  212 (479)
T PRK10077        191 DGWRYMFASEAIPALLFLMLLY  212 (479)
T ss_pred             CChHHHHHHHHHHHHHHHHHHH
Confidence            6899999987666655544333

>PRK03699 putative transporter; Provisional

Probab=99.87  E-value=2.7e-19  Score=187.90  Aligned_cols=173  Identities=9%  Similarity=0.043  Sum_probs=140.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      ++|..+...+..++.....+.....+|. +.+++|+|..+.+++.+.+.++..++.+++|+++||+ ||||++..+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~   82 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALM   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            3466666666666666665555455554 5678999999999999999999999999999999997 9999999999988


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++.+++.++                         ++...+++.|++.|++.+...+...+.+.|.+|+++      |++
T Consensus        83 ~i~~~l~~~~-------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~  131 (394)
T PRK03699         83 ILAVAGLMFS-------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGS  131 (394)
T ss_pred             HHHHHHHHHc-------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHH
Confidence            8888888875                         345678889999999999888888899999998876      888


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhh-cccchhhHHHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQ-THSGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~-~~~g~~~~f~~~~~~~~~~l~~  240 (547)
                      ..+..+...++|+.++|.+.+++. +..|||+.|.+.++..++.++.
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            888888888889999999988775 4578999998866655444433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.87  E-value=1.2e-19  Score=194.14  Aligned_cols=151  Identities=13%  Similarity=0.064  Sum_probs=121.2

Q ss_pred             HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953           58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM  137 (547)
Q Consensus        58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  137 (547)
                      ....+|+.++ |+++.+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.++++++..           
T Consensus        49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~-----------  115 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW-----------  115 (452)
T ss_pred             HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc-----------
Confidence            3445677777 99999999999999999999999999999997 9999999999988888887776521           


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHH-HHHHHHHH
Q 008953          138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGEL-VALTVLVW  216 (547)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-~~~~i~~~  216 (547)
                                ...+...+++.|++.|++.+...+...+.+.|++|+++      |++++++++.+.++|.. .+|.++..
T Consensus       116 ----------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~  179 (452)
T PRK11273        116 ----------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLG  179 (452)
T ss_pred             ----------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence                      01245667888999999999888888888899999887      89999999898898864 45655434


Q ss_pred             hhcccchhhHHHHHHHHHHHH
Q 008953          217 VQTHSGMDVGFGVSAAAMALG  237 (547)
Q Consensus       217 l~~~~g~~~~f~~~~~~~~~~  237 (547)
                      +....+||+.|++.++..++.
T Consensus       180 ~~~~~gw~~~f~i~~~~~~~~  200 (452)
T PRK11273        180 MAWFNDWHAALYMPAFAAILV  200 (452)
T ss_pred             HHHhccHHHHHHHHHHHHHHH
Confidence            434458999999876655443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.87  E-value=2e-19  Score=188.71  Aligned_cols=171  Identities=14%  Similarity=0.072  Sum_probs=141.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      .+|..+.+..+.++..+......+.+|. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.+..
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            4577777777777777776655555554 4577999999999999999999999999999999997 9999999999988


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++.+++..+                         .+...+++.|++.|++.+...+....+..|.+++++      +++
T Consensus        84 ~~~~~~~~~~-------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~  132 (394)
T PRK11652         84 ILGTLVALFA-------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRH  132 (394)
T ss_pred             HHHHHHHHHH-------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHH
Confidence            8888887775                         345668889999999988777777778888888766      788


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGL  238 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l  238 (547)
                      ..++...+..++..++|.+++++.+..|||+.|++.++..++..
T Consensus       133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~  176 (394)
T PRK11652        133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT  176 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            88888888899999999999999988899999998765544433

>TIGR00897 2A0118 polyol permease family

Probab=99.87  E-value=6e-19  Score=185.79  Aligned_cols=169  Identities=14%  Similarity=0.044  Sum_probs=138.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      ..||++....+..++.....+....++++++ +++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~   87 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL   87 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence            4468888888888888888887888888888 56999999999999999999999999999999997 999999999988


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      ..++.+++..... .                    ..+...+++.|++.|+|.+...+...+.+.+.+|+++      |+
T Consensus        88 ~~~~~~~~~~~~~-~--------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g  140 (402)
T TIGR00897        88 WCVGHAAFIVFGL-G--------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LS  140 (402)
T ss_pred             HHHHHHHHHHHhc-c--------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HH
Confidence            8887665532110 0                    0245567788999999888777777778889888877      99


Q ss_pred             cchhhhhhHHhHhH-HHHHHHHHHhhcccchhhHHHHHH
Q 008953          194 SYFNAAYFAFSTGE-LVALTVLVWVQTHSGMDVGFGVSA  231 (547)
Q Consensus       194 ~~~~~~~~~~~ig~-~~~~~i~~~l~~~~g~~~~f~~~~  231 (547)
                      +++++++.+.++|. .++|.+++++.+..||+..++...
T Consensus       141 ~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~  179 (402)
T TIGR00897       141 SAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL  179 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            99999999999996 689999999988889766655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.87  E-value=5.9e-19  Score=184.57  Aligned_cols=346  Identities=10%  Similarity=-0.034  Sum_probs=215.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH-HHHHH
Q 008953           40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV-ELSGF  118 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~-~~i~~  118 (547)
                      +.+.+..++...++....+++|.|+. ++|++..+.+++.+.+.+...++.++.|.++||+ ||++........ ..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            44555566666666667788889985 5899999999999999999999999999999997 985433221111 11111


Q ss_pred             H-HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953          119 I-LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN  197 (547)
Q Consensus       119 ~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  197 (547)
                      + ++..+                         ++.+.+++.|++++.+.+...|...++..+.  +++      |++.++
T Consensus        85 ~~~~~~~-------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g  131 (382)
T TIGR00902        85 AAFSAGA-------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYG  131 (382)
T ss_pred             HHHHHhh-------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCcc
Confidence            1 22222                         3466788889989888888888877776542  233      788899


Q ss_pred             hhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCC
Q 008953          198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICP  277 (547)
Q Consensus       198 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (547)
                      ......++|.+++|.+++++.+++|||..|++......+.++.+ ..+++.   ++++++..+                 
T Consensus       132 ~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~-----------------  190 (382)
T TIGR00902       132 KVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIGF-LIKPTI---PPKDAIPED-----------------  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HcCCCC---CCCcccccc-----------------
Confidence            99999999999999999999999999999887654433222222 221110   111000000                 


Q ss_pred             CCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 008953          278 SNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILA  357 (547)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (547)
                                   +        ..+.....                       +..++++.+...+..++........+.
T Consensus       191 -------------~--------~~~~~~~~-----------------------~~l~~~~~~~~l~~~~l~~~~~~~~~~  226 (382)
T TIGR00902       191 -------------E--------SQGDSAFI-----------------------ALLKNPMNLRFLAAVCLIQGAHAAYYG  226 (382)
T ss_pred             -------------c--------cccchhHH-----------------------HHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence                         0        00000000                       011122211212212222222222222


Q ss_pred             hhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 008953          358 QLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMI  436 (547)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~  436 (547)
                      ..+. +. +     + .  |... ..+.......+..++..++.+++    .+|       +++++.+.+|.++.++..+
T Consensus       227 ~~~~-~l-~-----~-~--g~s~~~~g~l~~~~~~~~i~~~~~~~~l----~~r-------~g~~~~l~~~~~~~~~~~~  285 (382)
T TIGR00902       227 FSAI-YW-Q-----A-A--GISASATGLLWGIGVLAEIIIFAFSNKL----FQN-------CSARDLLLISAIACVGRWA  285 (382)
T ss_pred             HHHH-HH-H-----H-C--CCCHhHHHHHHHHHHHHHHHHHHHhHHH----Hhh-------CCHHHHHHHHHHHHHHHHH
Confidence            2221 11 1     1 1  1111 11222222333333333333322    333       3566778899999999988


Q ss_pred             HHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008953          437 SAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYLSSLLVS  515 (547)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~-~~~~~G~~lg~~i~~  515 (547)
                      .++..+              +.+.+++..+++++.+++..+....++.+. |++.|++++++++ ...++|..+++.+.|
T Consensus       286 ~~~~~~--------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G  350 (382)
T TIGR00902       286 IIGAIE--------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAG  350 (382)
T ss_pred             HHHhHh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877652              566677778999999999999999999988 9999999999987 467899999999999


Q ss_pred             HHHHhh
Q 008953          516 FVNKVT  521 (547)
Q Consensus       516 ~l~~~~  521 (547)
                      ++.+..
T Consensus       351 ~l~~~~  356 (382)
T TIGR00902       351 FIYPTL  356 (382)
T ss_pred             HHHHhc
Confidence            998853

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.87  E-value=6.8e-20  Score=196.13  Aligned_cols=354  Identities=12%  Similarity=0.025  Sum_probs=211.1

Q ss_pred             HHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 008953           61 ITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTD  140 (547)
Q Consensus        61 ~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~  140 (547)
                      .+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.++++++.               
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------  105 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS---------------  105 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence            3445678999999999999999999999999999999996 999999999988888888887763               


Q ss_pred             CCcccccccchhHHHH-HHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhc
Q 008953          141 SENCEEAKGFKASIFF-LALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT  219 (547)
Q Consensus       141 ~~~~~~~~~~~~~~~~-~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~  219 (547)
                                +...++ ..|++.|++.+...+...+++.+.++ ++      |+++.++.+.+.++|..++|.+++++.+
T Consensus       106 ----------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~  168 (455)
T TIGR00892       106 ----------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFE  168 (455)
T ss_pred             ----------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence                      233344 45688899988765666677788885 45      8999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccc
Q 008953          220 HSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVF  299 (547)
Q Consensus       220 ~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (547)
                      .+|||++|++.++..+++++..++.++....++....+  +           .   ....+.    .. .++      . 
T Consensus       169 ~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~-----------~---~~~~~~----~~-~~~------~-  220 (455)
T TIGR00892       169 SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSK--S-----------K---EGLPPD----GS-TKK------L-  220 (455)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccc--c-----------c---ccCCCC----Cc-ccc------c-
Confidence            99999999998776665554444433221110000000  0           0   000000    00 000      0 


Q ss_pred             cccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcce
Q 008953          300 LTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFH  379 (547)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  379 (547)
                        ......+            +..++.  ..+..++++........++....++......+.+...       .   ++.
T Consensus       221 --~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-------~---g~s  274 (455)
T TIGR00892       221 --SKKSTAE------------KINRFL--DFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-------K---GVD  274 (455)
T ss_pred             --cccchhh------------hhhhhc--chHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-------c---CCC
Confidence              0000000            000000  0001111111111111111222222222222221111       0   111


Q ss_pred             e-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccch
Q 008953          380 V-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSI  458 (547)
Q Consensus       380 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  458 (547)
                      . ..+.+..+..++.++..|+..++.+    |...++   .....+..+.++.+++.++....              .+.
T Consensus       275 ~~~~g~~~~~~~~~~~~~~~~~g~l~d----~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~--------------~~~  333 (455)
T TIGR00892       275 EYEAAFLLSIIGFVDIFARPSCGLIAG----LKWIRP---HVQYLFSFALLFNGLTHLLCALA--------------GDY  333 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccCH---HHHHHHHHHHHHHHHHHHHHHHh--------------chH
Confidence            1 1122333334444555555554433    211110   11122333444444444443332              245


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008953          459 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTS  522 (547)
Q Consensus       459 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~  522 (547)
                      +.++...++.|++.+...+...+.+.+.+|++.+++..|+++....+|+.+|+.+.+.+.+..+
T Consensus       334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  397 (455)
T TIGR00892       334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK  397 (455)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence            5666677888999999999999999999999999999999999999999999999998877543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.87  E-value=5.5e-20  Score=199.34  Aligned_cols=181  Identities=12%  Similarity=0.016  Sum_probs=134.8

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINE-----MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF  110 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~  110 (547)
                      ++.+..+.+..+...+....+....+. +.++     .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++
T Consensus        15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~   92 (502)
T TIGR00887        15 FRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGME   92 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHH
Confidence            344444555555555544444443443 3332     245566778999999999999999999999997 999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953          111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK  190 (547)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~  190 (547)
                      .++..++.++++++.+.                   ....+...++++|++.|++.|+..+..++++.|.+|+++     
T Consensus        93 ~~~~~v~~~~~~~~~~~-------------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~-----  148 (502)
T TIGR00887        93 LIIMIIATVASGLSPGS-------------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW-----  148 (502)
T ss_pred             HHHHHHHHHHHHHccCc-------------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh-----
Confidence            99999988888775320                   000125679999999999999999999999999999988     


Q ss_pred             ccccchhhhhhHHhHhHHHHHHHHHHhhc-----------------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008953          191 KLSSYFNAAYFAFSTGELVALTVLVWVQT-----------------------HSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~-----------------------~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                       |+++.++.+....+|..+++.+..++..                       ..+||+.|.+.++..++.++..+.
T Consensus       149 -Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~  223 (502)
T TIGR00887       149 -RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT  223 (502)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHh
Confidence             9999999999999999998888765431                       237999998776665555444433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.87  E-value=7.1e-20  Score=196.56  Aligned_cols=147  Identities=14%  Similarity=0.129  Sum_probs=127.4

Q ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccc
Q 008953           67 EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEE  146 (547)
Q Consensus        67 ~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (547)
                      +++++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++..+..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6889999999999999999999999999999997 9999999999888888777655422                    


Q ss_pred             cccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhccc-chhh
Q 008953          147 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-GMDV  225 (547)
Q Consensus       147 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~-g~~~  225 (547)
                         .....+++.|+++|++.+...+....++.|.+|+++      |++++++.+.+.++|..++|.+++++.+.. |||+
T Consensus       129 ---~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~  199 (465)
T TIGR00894       129 ---GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPM  199 (465)
T ss_pred             ---cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCe
Confidence               234568889999999999999999999999999888      999999999999999999999999999884 9999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 008953          226 GFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       226 ~f~~~~~~~~~~l~~~~~  243 (547)
                      .|++.++..++..+.++.
T Consensus       200 ~f~i~~~~~~~~~~~~~~  217 (465)
T TIGR00894       200 IFYVFGIVGCAWSLLWFV  217 (465)
T ss_pred             ehhhhhHHHHHHHHHHHH
Confidence            999877765554444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.86  E-value=6.9e-19  Score=184.76  Aligned_cols=174  Identities=13%  Similarity=0.073  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhhhhHHhhcccchHHHHH-HHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIG-TVFLLALLGGYLSDSFLGSFWTML-IFGFVE  114 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~  114 (547)
                      ...+...+..++..+....+.+.++.|+.+++|.+..+.+++.+...+ +..++++++|+ +||+ ||||.++ .+.+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~   92 (393)
T PRK15011         15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLG   92 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHH
Confidence            445667777888888888888999999999999999999999776655 55566666666 9997 9998754 444555


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc--
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL--  192 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r--  192 (547)
                      .++..+.+++.                         +...+++.+.+.+...+...|...++..|..++++      |  
T Consensus        93 ~~~~~~~~~~~-------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  141 (393)
T PRK15011         93 VLACTLFAWNR-------------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REA  141 (393)
T ss_pred             HHHHHHHHHhh-------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chH
Confidence            56666655542                         34444444444433334556666777777655443      3  


Q ss_pred             ccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          193 SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +...++.+.+.++|.+++|.+++++.++.|||..|++.++..++..+..+.
T Consensus       142 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        142 VMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            233467778889999999999999999899999999877655555444433

>PRK11043 putative transporter; Provisional

Probab=99.86  E-value=5.4e-19  Score=185.91  Aligned_cols=147  Identities=18%  Similarity=0.139  Sum_probs=125.7

Q ss_pred             hhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 008953           64 VINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSEN  143 (547)
Q Consensus        64 l~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (547)
                      +.+++|.++.+.+++.+.+.++..++.+++|+++||+ |||+.+..+.++..++.+++..+                   
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~-------------------   91 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV-------------------   91 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            6678999999999999999999999999999999997 99999999988888888887775                   


Q ss_pred             ccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccch
Q 008953          144 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGM  223 (547)
Q Consensus       144 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~  223 (547)
                            ++...+++.|++.|++.+...+...+++.|.+|+++      +.+.++......++|..++|.+++++.++.||
T Consensus        92 ------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~  159 (401)
T PRK11043         92 ------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGW  159 (401)
T ss_pred             ------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence                  345668889999999888777777788899999776      67778888888889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 008953          224 DVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       224 ~~~f~~~~~~~~~~l~~~~  242 (547)
                      ++.|++.++..++..+..+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~  178 (401)
T PRK11043        160 QAIFATLFAITLLLILPTL  178 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999887666555544443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.86  E-value=4.9e-19  Score=190.58  Aligned_cols=174  Identities=11%  Similarity=0.056  Sum_probs=129.9

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      +|.+.......++.....+...+. .+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~  112 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPL-LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTA  112 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            344444444444555555554443 3466788999999999999999999999999999999997 99999999988888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.++++++.                         +...+++.|++.|++.+... ....++.|.+|+++      |+++
T Consensus       113 ~~~~~~~~~~-------------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a  160 (476)
T PLN00028        113 PAVFCMSLVS-------------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTA  160 (476)
T ss_pred             HHHHHHHHhc-------------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHH
Confidence            8888877763                         35567788999999887654 34567889999887      8999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhh----c-----ccchhhHHHHHHHHHHHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQ----T-----HSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~----~-----~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +++.+...++|..+++.+.+.+.    +     ..|||+.|++.++..++..+..+.
T Consensus       161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99988777788877776665442    1     258999999877665554444333

>PRK15075 citrate-proton symporter; Provisional

Probab=99.86  E-value=1.3e-18  Score=185.24  Aligned_cols=171  Identities=13%  Similarity=0.039  Sum_probs=123.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHH-HHHHHH-----HHHHHHhhhhHHhhcccchHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANI-VTNFIG-----TVFLLALLGGYLSDSFLGSFWTMLIF  110 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i-~~~~~~-----~~~~~~~~~G~laDr~~Gr~~~~~~~  110 (547)
                      +....+.+..+++.+... ......+.+.++++.++.+.+.. .+....     ...++.++.|+++||+ ||||.++.+
T Consensus        15 ~~~~~~~~~~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~   92 (434)
T PRK15075         15 RAILRVTSGNFLEMFDFF-LFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVT   92 (434)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHH
Confidence            334444444444444444 44566667888899888775433 332222     2236788999999997 999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953          111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK  190 (547)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~  190 (547)
                      .++..++.++++++.+...+                 .......++++|+++|++.+...+...++++|.+|+++     
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~-----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-----  150 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATI-----------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR-----  150 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHH-----------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc-----
Confidence            99999999999886431110                 00011246889999999999999988999999999988     


Q ss_pred             ccccchhhhhhHHhHhHHHHHHHHHHhh--------cccchhhHHHHHHH
Q 008953          191 KLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMDVGFGVSAA  232 (547)
Q Consensus       191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~  232 (547)
                       |++..++.....++|..+++.+++.+.        +..|||++|++.+.
T Consensus       151 -rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        151 -KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence             999999988888888888887776652        46799999987543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.86  E-value=1.9e-19  Score=194.58  Aligned_cols=167  Identities=16%  Similarity=0.102  Sum_probs=141.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      .+++.+..+.+..++..+....+ ....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            44565666666666666655544 4455567788999999999999999999999999999999997 999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      ..++.+++.++                         .+...+++.|++.|++.++..+...+++.|.+|+++      |+
T Consensus        95 ~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~  143 (496)
T PRK03893         95 FSVGTLACGFA-------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RN  143 (496)
T ss_pred             HHHHHHHHHHH-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HH
Confidence            88888888876                         346678889999999999999999999999999877      88


Q ss_pred             cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHH
Q 008953          194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAA  233 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~  233 (547)
                      +.+++.+...++|..++|.+.+++.++.+||+.|++.++.
T Consensus       144 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        144 KASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999875443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.85  E-value=1.3e-18  Score=183.86  Aligned_cols=147  Identities=12%  Similarity=0.097  Sum_probs=128.3

Q ss_pred             hhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 008953           64 VINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSEN  143 (547)
Q Consensus        64 l~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (547)
                      +.+++|.+..+.++..+.+.++..++.++.|+++||+ |||++++.+.++..++.+++..+                   
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a-------------------  101 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT-------------------  101 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------------------
Confidence            5678999999999999999999999999999999997 99999999999999998888876                   


Q ss_pred             ccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccch
Q 008953          144 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGM  223 (547)
Q Consensus       144 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~  223 (547)
                            .+...++++|+++|++.+...+...+.+.|.+|+++      |.+.++++....++|..++|.+++++.++.||
T Consensus       102 ------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw  169 (413)
T PRK15403        102 ------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHW  169 (413)
T ss_pred             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence                  346678999999999988766666778889999877      78889999999999999999999999988899


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 008953          224 DVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       224 ~~~f~~~~~~~~~~l~~~~  242 (547)
                      |+.|++.++..+++++..+
T Consensus       170 ~~~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        170 KVLFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999987776666554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.85  E-value=5.5e-19  Score=187.14  Aligned_cols=367  Identities=10%  Similarity=-0.001  Sum_probs=211.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.+|.+....++..++.+...++++.|+++++|+++.+.+++.+.+.++..+++++.|+++||+ ||||+++++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            5677777788888888888899999999999999999999999999999999999999999997 999999887665554


Q ss_pred             HHHHHHH-hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          117 GFILLSV-QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       117 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      +...... ... +.                    ... ....+..+.++..+...+...+.+.+..++. .++   ++..
T Consensus        89 ~~~~~~~~~~~-~~--------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~g~~  142 (420)
T PRK09528         89 LFGPFFIYVFA-PL--------------------LQY-NILLGAIVGGIYLGFGFLAGAGAIEAYIERV-SRR---SGFE  142 (420)
T ss_pred             HHHHHHHHHHH-HH--------------------HHH-HHHHHHHHHHHHhhhhhccchhhhhhHHHHH-Hhh---cccc
Confidence            4332211 100 00                    000 0111122222222322222222333332211 111   5667


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI  275 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (547)
                      ++..+...++|.+++|.+++++.+ .+|++.|++.++..+++++..+..+++.++++...++                  
T Consensus       143 ~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  203 (420)
T PRK09528        143 YGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA------------------  203 (420)
T ss_pred             chhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc------------------
Confidence            888888889999999999999876 4899999887766655555544433221111000000                  


Q ss_pred             CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHH-HHHHH
Q 008953          276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACT-IIFNT  354 (547)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  354 (547)
                       +..                    +.+.....+...                    ..+++ .++......+.. ..+..
T Consensus       204 -~~~--------------------~~~~~~~~~~~~--------------------~l~~~-~~~~l~l~~~~~~~~~~~  241 (420)
T PRK09528        204 -LGA--------------------NASAVSLKDALA--------------------LLKLP-KFWFLVLYVIGVACFYDV  241 (420)
T ss_pred             -hhc--------------------ccccccHHHHHH--------------------HccCC-CeEeehHHHHHHHHHHHH
Confidence             000                    000000000000                    00000 111111111111 11222


Q ss_pred             HHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953          355 ILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS  434 (547)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~  434 (547)
                      ...+.+.+....  ..+....   ....+....+..+...+..++.+++.    +|.++|       +.+..+.++.+++
T Consensus       242 ~~~~~~~~~~~~--~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~----dr~g~~-------~~~~~~~~l~~~~  305 (420)
T PRK09528        242 FDQQFPNFFASF--FATPEQG---TRVFGYLNSFQVFLEALIMFFAPFII----NRIGAK-------NALLLAGTIMAVR  305 (420)
T ss_pred             HHHHHHHHHHHH--HhccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCcc-------hhhHHHHHHHHHH
Confidence            222233322211  0000100   00112233333344445555555544    454433       3466777777777


Q ss_pred             HHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHHHHH
Q 008953          435 MISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLSSLL  513 (547)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~~G~~lg~~i  513 (547)
                      .+..++.              .+.++++...++.+++.+...+....++.+..|++.+++..++ +++...+|+.+++.+
T Consensus       306 ~~l~~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~  371 (420)
T PRK09528        306 IIGSGFA--------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL  371 (420)
T ss_pred             HHHHHhc--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH
Confidence            7766654              2456666777888888888888888899999999999988765 678889999999999


Q ss_pred             HHHHHHhh
Q 008953          514 VSFVNKVT  521 (547)
Q Consensus       514 ~~~l~~~~  521 (547)
                      .+++.+..
T Consensus       372 ~G~l~~~~  379 (420)
T PRK09528        372 AGNLYDSI  379 (420)
T ss_pred             HHHHHHhh
Confidence            99988753

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.85  E-value=2.9e-19  Score=185.04  Aligned_cols=161  Identities=15%  Similarity=0.108  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |+++..++..+......+...+++|.++++++|+++.+.+++.+.+.++..++.+++|+++||+ |||+.+.++.++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i   79 (366)
T TIGR00886         1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAI   79 (366)
T ss_pred             CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            3456677777777777787778888789999999999999999999999999999999999997 999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +.+++.++.                        .+...+++.|+++|++.+.. +...+++.|.+|+++      |++..
T Consensus        80 ~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~  128 (366)
T TIGR00886        80 PCLWAGLAV------------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTAL  128 (366)
T ss_pred             HHHHHHHHh------------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHH
Confidence            988888763                        04667888999999986654 556788999999887      88999


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhc----------ccchhhHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQT----------HSGMDVGFGV  229 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~----------~~g~~~~f~~  229 (547)
                      ++.....++|..+++.+++.+..          +.+||+.|++
T Consensus       129 ~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       129 GLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            99887788888888877766654          3479999843

>PRK10133 L-fucose transporter; Provisional

Probab=99.84  E-value=2.5e-18  Score=183.06  Aligned_cols=154  Identities=16%  Similarity=0.094  Sum_probs=123.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      +...++.+.++.+...+........+| .+++++|.++.+.++..+.+.++..++.++.|+++||+ ||||++.++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            345566666666666666655555555 45889999999999999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++.+++.....                      .+++..++++|+++|+|.+...+...+++.|..|+++      |..
T Consensus       102 ~~~~~l~~~~~~----------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~  153 (438)
T PRK10133        102 ALGAALFWPAAE----------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF  153 (438)
T ss_pred             HHHHHHHHHHHh----------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHH
Confidence            999887642210                      0456778999999999999999999999988765554      445


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhh
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQ  218 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~  218 (547)
                      .++..+....+|..++|.+++.+.
T Consensus       154 ~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        154 RLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678888888899999998877543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.84  E-value=8.8e-19  Score=186.99  Aligned_cols=144  Identities=23%  Similarity=0.289  Sum_probs=122.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccc
Q 008953           71 SLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGF  150 (547)
Q Consensus        71 ~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (547)
                      +..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++....+                      ..
T Consensus        69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~----------------------~~  125 (481)
T TIGR00879        69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF----------------------AL  125 (481)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc----------------------cc
Confidence            389999999999999999999999999997 9999999999999998888866432                      12


Q ss_pred             hhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH---HHhhcccchhhHH
Q 008953          151 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL---VWVQTHSGMDVGF  227 (547)
Q Consensus       151 ~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~---~~l~~~~g~~~~f  227 (547)
                      +...+++.|++.|+|.+...+...++++|.+|+++      |++++++++...++|..+++.++   +.+.+..+||+.|
T Consensus       126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f  199 (481)
T TIGR00879       126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL  199 (481)
T ss_pred             chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            34568899999999999999999999999999888      99999999999999999999998   6766778999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008953          228 GVSAAAMALGLFGVVS  243 (547)
Q Consensus       228 ~~~~~~~~~~l~~~~~  243 (547)
                      ++.++..++.++..++
T Consensus       200 ~~~~~~~~~~~~~~~~  215 (481)
T TIGR00879       200 GLQLIPAGLLFLGLFF  215 (481)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9866555554444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=99.84  E-value=5.3e-19  Score=191.70  Aligned_cols=147  Identities=16%  Similarity=0.131  Sum_probs=126.4

Q ss_pred             HHhhhhcCCC---hhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008953           62 TYVINEMHFS---LSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMV  138 (547)
Q Consensus        62 ~yl~~~lg~~---~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  138 (547)
                      +-+.++++++   ..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.++++++              
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~--------------  177 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS--------------  177 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc--------------
Confidence            3466789998   89999999999999999999999999996 99999999999999888888876              


Q ss_pred             CCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhh
Q 008953          139 TDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ  218 (547)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~  218 (547)
                                 .++..+++.|++.|++.+...+...+++.|.+|+++      |+...++......+|.+++|.++..+.
T Consensus       178 -----------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~  240 (505)
T TIGR00898       178 -----------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIP  240 (505)
T ss_pred             -----------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                       356778999999999999999999999999999888      888888888888999999998876654


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHH
Q 008953          219 THSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       219 ~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +   ||+.|++.++..++..+..+.
T Consensus       241 ~---wr~~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       241 D---WRWLQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHh
Confidence            3   999999877666655554443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.84  E-value=1.7e-18  Score=181.94  Aligned_cols=368  Identities=8%  Similarity=-0.005  Sum_probs=217.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.+|.+....++.........++++.|+++++|.++.+.+++.+.+.+...++.++.|+++||+ ||||.++.+.+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            5678888888888888888899999999999999999999999999999999999999999997 999999887666554


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +..........+.                 ........+++.+++.+++.+...+....+..|..+  +      ++..+
T Consensus        81 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~  135 (396)
T TIGR00882        81 LFAPFFIYVFGPL-----------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEY  135 (396)
T ss_pred             HHHHHHHHHhhhH-----------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccccc
Confidence            4332221100000                 000112334556777888888777777666655322  1      33456


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccC
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQIC  276 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (547)
                      +......++|.+++|.+++.+.+ .+|+..|++.+...++..+..+...++.    ++++...+           + .+ 
T Consensus       136 g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----------~-~~-  197 (396)
T TIGR00882       136 GKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVAN-----------A-LG-  197 (396)
T ss_pred             chhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhhc-----------c-cc-
Confidence            77778889999999999998865 5999999987666555544443322211    11000000           0 00 


Q ss_pred             CCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008953          277 PSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTIL  356 (547)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (547)
                      .++           +        ..+   ..+..                    +..++++.+...+..+.....+....
T Consensus       198 ~~~-----------~--------~~~---~~~~~--------------------~~l~~~~~~~~~l~~~~~~~~~~~~~  235 (396)
T TIGR00882       198 ANA-----------S--------AFS---LKLAL--------------------ELFRQRKFWMFVLYVVGVACVYDVFD  235 (396)
T ss_pred             ccc-----------C--------CCC---HHHHH--------------------HHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            000           0        000   00000                    00111111111111111111111221


Q ss_pred             hhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHH
Q 008953          357 AQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSM  435 (547)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~  435 (547)
                      .+.+.+...   .....   +.+. ..+.......+...+......++    .+|.++|       +.+.++.++.+++.
T Consensus       236 ~~~~~y~~~---~~~~~---~~~~~~~g~~~~~~~i~~~~~~~~~g~l----~~r~g~~-------~~l~~~~~l~~l~~  298 (396)
T TIGR00882       236 QQFANFFTS---FFATP---QQGTRVFGYVTTMGELLNALIMFCAPLI----INRIGAK-------NALLIAGTIMSVRI  298 (396)
T ss_pred             HHHHHHHHH---hcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccc-------hhHHHHHHHHHHHH
Confidence            222222211   11100   0000 01222222333333333333333    4454333       44677777777766


Q ss_pred             HHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHHHHHH
Q 008953          436 ISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLSSLLV  514 (547)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~~G~~lg~~i~  514 (547)
                      ......              .+.+++.+..++.+++..........+..+..|++.+++..+. +++...+|+.+++.+.
T Consensus       299 ~~~~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~  364 (396)
T TIGR00882       299 IGSSFA--------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLA  364 (396)
T ss_pred             HHHHhc--------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhH
Confidence            655543              2556666777888888877777777788888899988887766 6788999999999999


Q ss_pred             HHHHHhh
Q 008953          515 SFVNKVT  521 (547)
Q Consensus       515 ~~l~~~~  521 (547)
                      +++.+..
T Consensus       365 G~l~~~~  371 (396)
T TIGR00882       365 GNMYDSI  371 (396)
T ss_pred             HHHHHhc
Confidence            9998853

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.84  E-value=2.2e-19  Score=181.03  Aligned_cols=179  Identities=14%  Similarity=0.060  Sum_probs=155.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhHHH---HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHH
Q 008953           33 HGGMKAAVFVLGLQAFEIMAIAAVGNN---LITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLI  109 (547)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~  109 (547)
                      +.+.|--+.+++..++...++|.+.-.   ..+++.++.++|.+|.+.+.+++.+.+.++-.+.|.++||. +.|+.+-+
T Consensus        21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~   99 (448)
T COG2271          21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehH
Confidence            344455567777888888888877643   56788888999999999999999999999999999999997 99999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953          110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS  189 (547)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~  189 (547)
                      ++++..+..+++.++.                         +...+.+..++.|..+|.-.|.....++.++++++    
T Consensus       100 gLilsai~nil~Gfs~-------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e----  150 (448)
T COG2271         100 GLILSAIVNILFGFSP-------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE----  150 (448)
T ss_pred             HHHHHHHHHHHHhhhh-------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc----
Confidence            9999999999999974                         46668888889999999999999999999999988    


Q ss_pred             cccccchhhhhhHHhHhHHHHHHHH--HHhhcccchhhHHHHHHHHHHHH-HHHHHH
Q 008953          190 KKLSSYFNAAYFAFSTGELVALTVL--VWVQTHSGMDVGFGVSAAAMALG-LFGVVS  243 (547)
Q Consensus       190 ~~r~~~~~~~~~~~~ig~~~~~~i~--~~l~~~~g~~~~f~~~~~~~~~~-l~~~~~  243 (547)
                        ||+..++.+.+.|+|+++.|.+.  +++..+.+||..|++++++.++. ++.++.
T Consensus       151 --RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         151 --RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             --cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence              99999999999999999999999  99999999999999988765554 444444

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.5e-20  Score=191.20  Aligned_cols=181  Identities=18%  Similarity=0.100  Sum_probs=161.3

Q ss_pred             CcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953           31 NKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF  110 (547)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~  110 (547)
                      ..+..++.+.+++++...+++--|.+-. .-.-.++.+|.++++.|++...+.+...+.+|+.|+++||| .||+++.+|
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG  104 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVG  104 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeH
Confidence            4445567788889999999999998765 44456778999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953          111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK  190 (547)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~  190 (547)
                      ..++.+..++++++                         ..++++.++|.+.|+|.+...|..+++++|.||+++     
T Consensus       105 ~~iW~~Av~~~~fs-------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~-----  154 (493)
T KOG1330|consen  105 IFIWTLAVFASGFS-------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK-----  154 (493)
T ss_pred             HHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh-----
Confidence            99999999999998                         457889999999999999999999999999999998     


Q ss_pred             ccccchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHc
Q 008953          191 KLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSG  244 (547)
Q Consensus       191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~  244 (547)
                       |++.++++|+++++|.++|.+.++.+..+.+ |||.|...+++.++..++.+..
T Consensus       155 -Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f  208 (493)
T KOG1330|consen  155 -RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF  208 (493)
T ss_pred             -hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence             9999999999999999999999999998888 9999999887766655554443

>TIGR00896 CynX cyanate transporter

Probab=99.83  E-value=2.2e-18  Score=178.27  Aligned_cols=329  Identities=14%  Similarity=0.112  Sum_probs=205.7

Q ss_pred             HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953           58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM  137 (547)
Q Consensus        58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  137 (547)
                      ....+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ ||||++.++.+...++.+.+ .+             
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~-------------   84 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA-------------   84 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence            3344566778999999999999999999999999999999997 99999999988877776665 33             


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh
Q 008953          138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV  217 (547)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l  217 (547)
                                  ++...+++.|++.|++.+...+.....+.|.+| ++      |+++.++++...++|..+++.+++.+
T Consensus        85 ------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        85 ------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             ------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        245567888999999999888777888888876 34      88899999999999999999998888


Q ss_pred             hcccc--hhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCC
Q 008953          218 QTHSG--MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDS  295 (547)
Q Consensus       218 ~~~~g--~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (547)
                      .++.+  ||+.|...++..++.++...   ++.+++++++++                   . .                
T Consensus       146 ~~~~~~~w~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------------~-~----------------  186 (355)
T TIGR00896       146 AQHSGGHWQQALAWWALPALLALLAWI---PQVRRRVAANQT-------------------T-T----------------  186 (355)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHh---hhhccccCCCCC-------------------C-C----------------
Confidence            77653  99888765544433322221   111111100000                   0 0                


Q ss_pred             CccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCC
Q 008953          296 GSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLT  375 (547)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  375 (547)
                                               ...+++     ..++++.+...+...+....++....+.+.+....  ..+.   
T Consensus       187 -------------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--g~~~---  231 (355)
T TIGR00896       187 -------------------------RLTPVR-----IWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISH--GASA---  231 (355)
T ss_pred             -------------------------CCCCch-----hhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCH---
Confidence                                     000000     01111111111111122222233323333222111  1110   


Q ss_pred             CcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 008953          376 KNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKT  455 (547)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~  455 (547)
                          ...+.......+..++..++.+++.    +|.++|      ++.+.++..+.+++.+.......            
T Consensus       232 ----~~~g~~~~~~~~~~i~~~~~~g~l~----dr~~~~------~~~~~~~~~~~~~~~~~~~~~~~------------  285 (355)
T TIGR00896       232 ----ATAGSLLALMQLAQAASALLIPALA----RRVKDQ------RGIVAVLAVLQLVGLCGLLFAPM------------  285 (355)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhHHHHH----hhhccc------hHHHHHHHHHHHHHHHHHHHhhh------------
Confidence                0112233334444555555555543    344222      23456676777777666655421            


Q ss_pred             cchHHHHHHHHHHHHHHHHHhHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008953          456 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSS  523 (547)
Q Consensus       456 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~-p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~~  523 (547)
                       +..+  ...++.|++.+...|...+.+.+.. +++.++..+++.+....+|+.++|.+.+++.+.+++
T Consensus       286 -~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       286 -HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             -hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             1111  1346789999998888777766544 467789999999999999999999999999987654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.83  E-value=1.4e-17  Score=174.25  Aligned_cols=337  Identities=9%  Similarity=-0.013  Sum_probs=204.7

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchH----HHHHHHHHHHHHHHHHH
Q 008953           46 QAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSF----WTMLIFGFVELSGFILL  121 (547)
Q Consensus        46 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~----~~~~~~~~~~~i~~~l~  121 (547)
                      .++...+.....+++|.|++ ++|.|..+.+++.+++.+...++.++.|.++||+ ||+    +.+.+......  ....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~--~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA--VAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH--HHHH
Confidence            44444556667788899995 5899999999999999999999999999999997 984    33332222111  1111


Q ss_pred             HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhh
Q 008953          122 SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF  201 (547)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  201 (547)
                      ..+                         ++.+.+++.|++.+++.+...|...++..+.  +++      |++.++..+.
T Consensus        89 ~~~-------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~  135 (382)
T PRK11128         89 FGA-------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRL  135 (382)
T ss_pred             Hhc-------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHH
Confidence            111                         3466777889999999888888877776665  223      6777888888


Q ss_pred             HHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcc
Q 008953          202 AFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQ  281 (547)
Q Consensus       202 ~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (547)
                      ..++|.++||.+++++.+++|||..|++.++..++.++.... .++   +++++++.++                .    
T Consensus       136 ~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~----------------~----  191 (382)
T PRK11128        136 WGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLL-RPT---IMPQGESRQQ----------------E----  191 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHc-cCC---CCCccccccc----------------c----
Confidence            889999999999999999999999998766544443333222 111   1111100000                0    


Q ss_pred             cccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhH-HHHHHHHHHHHHHHhhhh
Q 008953          282 MLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISV-VPIFACTIIFNTILAQLQ  360 (547)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  360 (547)
                                        +.....+.                       +..+++ .++.. +..++........+...+
T Consensus       192 ------------------~~~~~~~~-----------------------~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~  229 (382)
T PRK11128        192 ------------------SAGWPAWK-----------------------ALLKEP-TVWRFLLCVSLLQGSHAAYYGFSA  229 (382)
T ss_pred             ------------------ccccchHH-----------------------HHHcCh-hHHHHHHHHHHHHHHhHhHHHHHH
Confidence                              00000000                       001111 12211 111122222222222222


Q ss_pred             hhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008953          361 TFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAA  439 (547)
Q Consensus       361 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~  439 (547)
                      . +..+       .  +... ..+.+..++.+..++...+.+++    .+|.       +.++.+..+.++.+++++..+
T Consensus       230 ~-~~~~-------~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~l~~~~~~~~~~~~~~~  288 (382)
T PRK11128        230 I-YWQA-------A--GYSASTIGYLWSLGVVAEVLIFAFSNRL----FRRW-------SARDLLLLSAICGVVRWGLMG  288 (382)
T ss_pred             H-HHHH-------C--CCCHhHHHHHHHHHHHHHHHHHHHHHHH----HHHC-------CHHHHHHHHHHHHHHHHHHHH
Confidence            1 1111       1  1111 11222233333333333333333    3342       445667778888888777665


Q ss_pred             HHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 008953          440 LMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYLSSLLVSFVN  518 (547)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~-~~~~~G~~lg~~i~~~l~  518 (547)
                      ..              .+.+.+++..++.|+++++..+....+..+. +++++++.+++++ ....+|..+|+.+.|.+.
T Consensus       289 ~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~  353 (382)
T PRK11128        289 ST--------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY  353 (382)
T ss_pred             hh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54              2556667788899999999999999998887 5566789999887 567888899999999888


Q ss_pred             Hhh
Q 008953          519 KVT  521 (547)
Q Consensus       519 ~~~  521 (547)
                      +..
T Consensus       354 ~~~  356 (382)
T PRK11128        354 QHL  356 (382)
T ss_pred             Hhc
Confidence            753

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.83  E-value=1.1e-18  Score=185.83  Aligned_cols=153  Identities=12%  Similarity=0.034  Sum_probs=124.3

Q ss_pred             HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008953           59 NLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMV  138 (547)
Q Consensus        59 ~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  138 (547)
                      ...+++++ +|+++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.+++....+.           
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~-----------  114 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA-----------  114 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc-----------
Confidence            34456665 599999999999999999999999999999997 99999999888888887776654210           


Q ss_pred             CCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh-
Q 008953          139 TDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV-  217 (547)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l-  217 (547)
                                ..+...+++.|++.|++.+...+.....+.|.+|+++      |++++++++...++|..+++.+.+.+ 
T Consensus       115 ----------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~  178 (438)
T TIGR00712       115 ----------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGM  178 (438)
T ss_pred             ----------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence                      0234567788999999999888888889999999888      99999999999999999998877754 


Q ss_pred             hcccchhhHHHHHHHHHHHHHHH
Q 008953          218 QTHSGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       218 ~~~~g~~~~f~~~~~~~~~~l~~  240 (547)
                      ..+.+||+.|++.++..++..+.
T Consensus       179 ~~~~~w~~~f~~~~~~~~i~~~~  201 (438)
T TIGR00712       179 AWFNDWHAALYFPAICAIIVALF  201 (438)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHH
Confidence            44568999999877665554433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.83  E-value=6.8e-18  Score=200.64  Aligned_cols=361  Identities=14%  Similarity=0.068  Sum_probs=217.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChh--hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLS--NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~--~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      .+.++.+++..++.++........+..++...++.+..  ..+++.+++.++..++.+++|+++||+ |||++++++.++
T Consensus         8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~   86 (1146)
T PRK08633          8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF   86 (1146)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence            35566666777777776666666666677666666544  368889999999999999999999997 999999988876


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      ..++.+++.++..                      ..++..+++.|++.|++.+...+...+++.|.+|+++      |+
T Consensus        87 ~~~~~~~~~~~~~----------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~  138 (1146)
T PRK08633         87 EVGLTLLIVLAYY----------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LS  138 (1146)
T ss_pred             HHHHHHHHHHHHH----------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------ch
Confidence            6665555444321                      0346778999999999999999999999999999888      99


Q ss_pred             cchhhhhhHHhHhHHHHHHHHHHhhcc--------c-chhhHHHHHHHH-HHHHHHHHHHcCceeeccCCCCCCchhHHH
Q 008953          194 SYFNAAYFAFSTGELVALTVLVWVQTH--------S-GMDVGFGVSAAA-MALGLFGVVSGTLYYRNKRPQGSIFTPIAQ  263 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~--------~-g~~~~f~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  263 (547)
                      +++++...+.++|.++|+.+++++...        + +|.+.+.+..+. .+++++..+.. ++.+...+.... ..   
T Consensus       139 ~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---  213 (1146)
T PRK08633        139 RANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRL-PKVPAAAPEVFD-KK---  213 (1146)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcC-cCCCCCCccccc-cc---
Confidence            999999999999999999999998765        2 233333332222 22222222221 111110000000 00   


Q ss_pred             HHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHH
Q 008953          264 VFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVV  343 (547)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                                                 .        ..........               ++    ...+++......+
T Consensus       214 ---------------------------~--------~~~~~~~~~~---------------~~----~l~~~~~~~~~~~  239 (1146)
T PRK08633        214 ---------------------------K--------YLFPKLLWRN---------------LK----LLRSDRVLWLAII  239 (1146)
T ss_pred             ---------------------------c--------cccHHHHHHH---------------HH----HHhcCcHHHHHHH
Confidence                                       0        0000000000               00    0000011111111


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCccee--CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChh
Q 008953          344 PIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV--PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPL  421 (547)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~  421 (547)
                      ...+.....+.....++.++..       .+  ++..  ..+.+.....++.+++..+.+++    .+|..       .+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~-------~~--g~s~~~~~g~~~~~~~ig~~~g~~~~g~l----~~r~~-------~~  299 (1146)
T PRK08633        240 GLSYFWFISQLAQANFPAYAKE-------VL--GLDNTFQVQYLLAASAIGIGIGSLLAGRL----SGRHI-------EL  299 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHH-------Hh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH----hCCce-------Ec
Confidence            1111111111121222221111       11  1111  12223333334444444444443    33432       22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHH
Q 008953          422 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC  501 (547)
Q Consensus       422 ~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~  501 (547)
                      +.+.++.++++++.+++...              .+.+.+++..++.|++.++..+...+++.+.+|++.||+++|+.++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~  365 (1146)
T PRK08633        300 GLVPLGALGLALSLFLLPTA--------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNF  365 (1146)
T ss_pred             cchhHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence            34666777777776666654              2556667778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008953          502 SYSFGFYLSSLLVSFVN  518 (547)
Q Consensus       502 ~~~~G~~lg~~i~~~l~  518 (547)
                      .+.+|..+++.+.+.+.
T Consensus       366 ~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        366 LQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998877776665544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.83  E-value=1.5e-17  Score=174.27  Aligned_cols=169  Identities=15%  Similarity=0.074  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      +-+.....+....+.......+| .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.++.+.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence            33444444455555554444454 45567999999999999999999999999999999997 99999999999988888


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA  198 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  198 (547)
                      +++..+                         ++...+++.|+++|++.+...+...+++.|.+|+++      |++..++
T Consensus        83 ~~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~  131 (392)
T PRK10473         83 LLCSLA-------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSL  131 (392)
T ss_pred             HHHHHh-------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence            888775                         335567888999999999888888999999999887      8999999


Q ss_pred             hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008953          199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~  240 (547)
                      .+...++|..++|.+++++.+..+|++.|++.++..++..+.
T Consensus       132 ~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~  173 (392)
T PRK10473        132 LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888889999998876655554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.82  E-value=9.4e-18  Score=174.65  Aligned_cols=155  Identities=16%  Similarity=0.103  Sum_probs=133.5

Q ss_pred             HhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008953           54 AAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPP  133 (547)
Q Consensus        54 ~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  133 (547)
                      ....+.+|.+. +++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.+++..+         
T Consensus         8 ~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~---------   76 (377)
T PRK11102          8 DMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA---------   76 (377)
T ss_pred             HHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH---------
Confidence            33446666666 46999999999999999999999999999999997 99999999999999988888876         


Q ss_pred             CCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHH
Q 008953          134 KCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTV  213 (547)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i  213 (547)
                                      .+...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.+
T Consensus        77 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~  134 (377)
T PRK11102         77 ----------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPII  134 (377)
T ss_pred             ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                            345668889999999999988889999999999887      8999999999999999999999


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008953          214 LVWVQTHSGMDVGFGVSAAAMALGLFGV  241 (547)
Q Consensus       214 ~~~l~~~~g~~~~f~~~~~~~~~~l~~~  241 (547)
                      ++++.+..+|++.|++.++..++..+..
T Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102        135 GGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            9999998899999988766655554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.82  E-value=7.2e-18  Score=179.16  Aligned_cols=356  Identities=13%  Similarity=0.064  Sum_probs=215.8

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHH-HHHHHHHHHHHHHHHH
Q 008953           46 QAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFW-TMLIFGFVELSGFILL  121 (547)
Q Consensus        46 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~-~~~~~~~~~~i~~~l~  121 (547)
                      .+..++....+..+++.|+++++|+++.+++++.++..+...+..|+.|+++||.   +|||| .++++.....++.+++
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792         8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            4455666777778899999999999999999999999999999999999999983   38755 5667777777777777


Q ss_pred             HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC-CCcccccccccchhhhh
Q 008953          122 SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ-SNPKQSKKLSSYFNAAY  200 (547)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~  200 (547)
                      ....+.+.                   ......+++.+++.+++.+.......++.+|..++ ++      |++..++..
T Consensus        88 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~  142 (437)
T TIGR00792        88 FTTPDFSA-------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRR  142 (437)
T ss_pred             HhCCCCCc-------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHH
Confidence            66422110                   12244566667777888887777778888888753 44      788888887


Q ss_pred             hHHhHhHHHHHHHHHHhh-------cccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhc
Q 008953          201 FAFSTGELVALTVLVWVQ-------THSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRK  273 (547)
Q Consensus       201 ~~~~ig~~~~~~i~~~l~-------~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (547)
                      ...++|..+++.+.+.+.       +..+|++.+.+.++..++..+..+...++.+.++++.++                
T Consensus       143 ~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~----------------  206 (437)
T TIGR00792       143 FGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE----------------  206 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc----------------
Confidence            778888777766655443       245799988877666555544443332221110000000                


Q ss_pred             ccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHH
Q 008953          274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFN  353 (547)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (547)
                                                  ++.+..+..+                   ...++++ ++..+   ...+..+
T Consensus       207 ----------------------------~~~~~~~~~~-------------------~l~~~~~-~~~~~---~~~~~~~  235 (437)
T TIGR00792       207 ----------------------------KKLSLKQIFK-------------------ALFKNDQ-LLILC---LAYLFYN  235 (437)
T ss_pred             ----------------------------cCCCHHHHHH-------------------HHhCCHH-HHHHH---HHHHHHH
Confidence                                        0000000000                   0001111 11111   1111122


Q ss_pred             HHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 008953          354 TILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATF  433 (547)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i  433 (547)
                      ..+.........   ..+..+  +.....+.+..+..+..++..++..++.    +|.+       +++.+.++.++.++
T Consensus       236 ~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~i~~ii~~~~~~~l~----~r~g-------~~~~~~~~~~~~~~  299 (437)
T TIGR00792       236 LAFNIKNGVQVY---YFTYVL--GDPELFSYMGSIAIVAGLIGVLLFPRLV----KKFG-------RKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHcchhhe---eEeeec--CChHHHHHHHHHHHHHHHHHHHHHHHHH----HHhC-------cHHHHHHHHHHHHH
Confidence            221111111110   001011  0000112222333455555556655543    3433       33557777777777


Q ss_pred             HHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc-------hhhHHHHHHHHHHHHHHH
Q 008953          434 SMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFLTAMTYCSYSFG  506 (547)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~rg~~~g~~~~~~~~G  506 (547)
                      +++......             .+.+..++..++.+++.+...+..+++..|..|       ++.+|.+.|++++...+|
T Consensus       300 ~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g  366 (437)
T TIGR00792       300 GYLIFFFAG-------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLG  366 (437)
T ss_pred             HHHHHHHcc-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHH
Confidence            776655431             234455666778889999888888888888765       556899999999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 008953          507 FYLSSLLVSFVNKVTS  522 (547)
Q Consensus       507 ~~lg~~i~~~l~~~~~  522 (547)
                      ..+++.+.+.+.+..+
T Consensus       367 ~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       367 QALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999988654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.82  E-value=6.2e-18  Score=200.85  Aligned_cols=342  Identities=11%  Similarity=0.076  Sum_probs=199.6

Q ss_pred             hhhhcCCCh-hhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH--HHHHHHHHHHhhccCCCCCCCCCCCCC
Q 008953           64 VINEMHFSL-SNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV--ELSGFILLSVQAHLPQLKPPKCNMVTD  140 (547)
Q Consensus        64 l~~~lg~~~-~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~  140 (547)
                      +++..+.+. ...+++.+++.+...++.+++|+++||+ |||+++......  ......+..+..               
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~---------------  105 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL---------------  105 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence            334444433 3467788889999999999999999997 999986442222  111111222211               


Q ss_pred             CCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc
Q 008953          141 SENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH  220 (547)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~  220 (547)
                               .+++.++++|+++|++.++..|...+++.|.+|+++      |++++++..++.++|.++||.++|++...
T Consensus       106 ---------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~  170 (1140)
T PRK06814        106 ---------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATIS  170 (1140)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     346778999999999999999999999999999988      99999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCcccc
Q 008953          221 SGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFL  300 (547)
Q Consensus       221 ~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (547)
                      .+|++.|+..++..+++++..+...+. +..++..+......+                                     
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------------------------------  212 (1140)
T PRK06814        171 GNFVILVALLMGIAVLGWLASLFIPKT-GNAAPDLKIDRNIIR-------------------------------------  212 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCeeccchHH-------------------------------------
Confidence            999988855444444443333322211 110000000000000                                     


Q ss_pred             ccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCccee
Q 008953          301 TQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV  380 (547)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  380 (547)
                          ...+..               +    ...+++..+...+..+++...+.....+++.+.... ...+       ..
T Consensus       213 ----~~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~g~~-------~~  261 (1140)
T PRK06814        213 ----STITLL---------------K----YAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-LGGD-------EN  261 (1140)
T ss_pred             ----HHHHHH---------------H----HHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-cCCc-------hH
Confidence                000000               0    000111111111222222222223323333222111 0000       01


Q ss_pred             CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC--------
Q 008953          381 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDS--------  452 (547)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~--------  452 (547)
                      ..+.+.....++.+++..+..++.    ++..++       +.+..+.++.++..+.+.+...+   .....        
T Consensus       262 ~~g~~~~~~~~g~~ig~~~~g~l~----~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~  327 (1140)
T PRK06814        262 VATLFLAVFSVGVAVGSFLASKLS----EGRITL-------LYVPIGALLMGLFGLDLAFASSS---VPAEPAQLKSILV  327 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh----CCceee-------eeehHHHHHHHHHHHHHHhcccc---cccccccccchhh
Confidence            123333444455555555555442    222111       22344444444433333321000   00000        


Q ss_pred             -CCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          453 -GKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  519 (547)
Q Consensus       453 -~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~  519 (547)
                       ....+.+.+++..++.|++.++..++..+++.+.+|++.||+++|+.++.+.+|..+++.+.+.+..
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        328 FLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             hhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0013456667788889999999999999999999999999999999999999999999999888764

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.82  E-value=1.2e-17  Score=176.04  Aligned_cols=178  Identities=11%  Similarity=0.011  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVIN-EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      |+++. ....+...+..+.+...+...+.+ ++|++..|.+++.+++.++..+++++.|++.||+ |.|+++.++.++..
T Consensus        34 r~l~~-s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWI-SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            55544 455566666666666666666655 7999999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      +.+++++++...+                    .+++..+++.|++.|++ +...+.....+.++||+++      |+++
T Consensus       112 i~~~~~~~a~~~~--------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A  164 (462)
T PRK15034        112 IPCVWLGIAVQNP--------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSA  164 (462)
T ss_pred             HHHHHHHHHHccc--------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHH
Confidence            9888888752100                    13567799999999998 6677888899999999888      8999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhh-----c-------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQ-----T-------------HSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~-----~-------------~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ++++....|+|..+++.+.+.+.     .             ..+|+.++++..+..+++.+..++
T Consensus       165 ~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        165 LGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987666777766655554322     2             334776666655555555444444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.82  E-value=1.9e-17  Score=178.48  Aligned_cols=358  Identities=13%  Similarity=0.114  Sum_probs=230.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      +..+.+.+++.+++.+.-..-++-++. ++.-|+...+++..+..+-..+..+++|.++||+ .|||+++.+-++..+..
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~   89 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVA   89 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHH
Confidence            333444444444444444343444444 4567788899999999999999999999999997 99999999988777666


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA  198 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  198 (547)
                      +.+++.....                    ..+.+.+++..++.|++.+...|...+++.|..|+++      ..++.++
T Consensus        90 ~~L~~l~~~~--------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al  143 (524)
T PF05977_consen   90 LLLAVLAFFG--------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANAL  143 (524)
T ss_pred             HHHHHHHHhC--------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHH
Confidence            5555543222                    2456778888889999999999999999999999988      8888999


Q ss_pred             hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCC
Q 008953          199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPS  278 (547)
Q Consensus       199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (547)
                      .....|+.-.+||.++|.+....|-.+.|.+.++..++.++.+...+++.+   ++..+.+...+.+...++.-      
T Consensus       144 ~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G~ryv------  214 (524)
T PF05977_consen  144 NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFSALREGLRYV------  214 (524)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHHHHHH------
Confidence            999999999999999999998889888999887766665555444333211   11111011110000000000      


Q ss_pred             CcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 008953          279 NPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQ  358 (547)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (547)
                                                                        ..+  ...+..  .+..+++.+........
T Consensus       215 --------------------------------------------------~~~--~~l~~~--l~~~~~~~l~~~a~~aL  240 (524)
T PF05977_consen  215 --------------------------------------------------RSS--PPLRSV--LLRSFLFNLFASAVWAL  240 (524)
T ss_pred             --------------------------------------------------hcc--hHHHHH--HHHHHHHHHhhhHHHHh
Confidence                                                              000  001111  11111222222222222


Q ss_pred             hhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008953          359 LQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISA  438 (547)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~  438 (547)
                      ++- +..+  .+...     ...-+.+.....++.++++.+..++    .+|       .+..+.+..+.++.+++++.+
T Consensus       241 lPl-~a~~--~l~~~-----a~~yGll~a~~gvGai~Gal~~~~l----~~~-------~~~~~lv~~~~~~~a~~~~~l  301 (524)
T PF05977_consen  241 LPL-FARD--VLGGG-----ASGYGLLLAAFGVGAILGALLLPRL----RRR-------LSSRRLVLLASLLFALALLLL  301 (524)
T ss_pred             hhH-HHHH--HhCCc-----HHHHHHHHHHHHHHHHHHHHHHHHh----hcc-------cCcchhhHHHHHHHHHHHHHH
Confidence            221 1111  11110     0111233334444445444443322    222       234455777888888877777


Q ss_pred             HHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          439 ALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  518 (547)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~  518 (547)
                      ++.              .+.+..++..++.|++.....+...+...+..|+++||+.++++.+....+..+|..+.|.+.
T Consensus       302 al~--------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la  367 (524)
T PF05977_consen  302 ALS--------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA  367 (524)
T ss_pred             hcc--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            764              356667778889999999999999999999999999999999999999889999999888876


Q ss_pred             Hh
Q 008953          519 KV  520 (547)
Q Consensus       519 ~~  520 (547)
                      +.
T Consensus       368 ~~  369 (524)
T PF05977_consen  368 DH  369 (524)
T ss_pred             HH
Confidence            63

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.81  E-value=1.7e-17  Score=172.72  Aligned_cols=156  Identities=17%  Similarity=0.092  Sum_probs=114.1

Q ss_pred             HHHHHhhhhcC--CChhhHHHHHHHH-----HHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008953           59 NLITYVINEMH--FSLSNSANIVTNF-----IGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLK  131 (547)
Q Consensus        59 ~l~~yl~~~lg--~~~~~~~~i~~~~-----~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~  131 (547)
                      ....++.++..  .++.+.+.+.+..     .+...++.++.|+++||+ ||||++.++.++..++.++++++.+.+.  
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~--   90 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT--   90 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence            44555555543  3445555544332     223346789999999997 9999999999999999988888643111  


Q ss_pred             CCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHH
Q 008953          132 PPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVAL  211 (547)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~  211 (547)
                                     ........+++.|+++|++.+...+...+++.|.+|+++      |++..++...+..+|..+++
T Consensus        91 ---------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~  149 (394)
T TIGR00883        91 ---------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAA  149 (394)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHH
Confidence                           000112357888999999999999999999999999887      88899999888899999998


Q ss_pred             HHHHHhh--------cccchhhHHHHHHHHHHHHH
Q 008953          212 TVLVWVQ--------THSGMDVGFGVSAAAMALGL  238 (547)
Q Consensus       212 ~i~~~l~--------~~~g~~~~f~~~~~~~~~~l  238 (547)
                      .+...+.        +..+||+.|++.++..+++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       150 LTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            8876553        35689999988665554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.80  E-value=9.5e-17  Score=169.94  Aligned_cols=358  Identities=10%  Similarity=0.006  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccch-HHHHHHHHHHHHHHHH
Q 008953           41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS-FWTMLIFGFVELSGFI  119 (547)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-~~~~~~~~~~~~i~~~  119 (547)
                      .+.+..++...++-...++++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ || |+++.++.+...++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence            466677777777777779999999999999999999999999999999999999999996 65 7777777777767766


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccC--------CCCCCcccccc
Q 008953          120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQ--------FDQSNPKQSKK  191 (547)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~--------~~~~~~~~~~~  191 (547)
                      +..+..                         +...+++.|++.+++.+...+...++..+.        .....      
T Consensus        85 ~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------  133 (418)
T TIGR00889        85 FAAQVT-------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------  133 (418)
T ss_pred             HHHHhc-------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------
Confidence            666542                         345566777777777665555444432211        11111      


Q ss_pred             cccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhh
Q 008953          192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLK  271 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (547)
                      |.+.++      .+|.+++|.+++.+.....|. +|++.++..++..+..+. .++.++ +++++. .+..+        
T Consensus       134 ~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~-~~~~~~-~~~~~--------  195 (418)
T TIGR00889       134 PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPV-AKSTAK-MSIKV--------  195 (418)
T ss_pred             Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCC-Cccccc-cCHHH--------
Confidence            334443      468899999998885433455 355544444443333222 222110 000000 00000        


Q ss_pred             hcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHH
Q 008953          272 RKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII  351 (547)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (547)
                                                     . ...+..                    +..++++.....+..++....
T Consensus       196 -------------------------------~-~~~~~~--------------------~~~k~~~~~~~~~~~~~~~~~  223 (418)
T TIGR00889       196 -------------------------------M-LGLDAF--------------------ILFKNKRMAIFFFFSMLLGAP  223 (418)
T ss_pred             -------------------------------H-hhhhHH--------------------HHhcCCCeeeHHHHHHHHHhH
Confidence                                           0 000000                    000001001111111111111


Q ss_pred             HHHHHhhhhhhhhhhhhhccccCCCcce-eCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHH
Q 008953          352 FNTILAQLQTFSVQQGSAMNNKLTKNFH-VPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFL  430 (547)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l  430 (547)
                      ....+...+...... ...+.... ++. ...+....+..+..++...+.+++    .+|++       +++.+.++.++
T Consensus       224 ~~~~~~~~~~~~~~~-g~~~~~~~-~~~~~~~g~~~~~~~i~~i~~~~~~g~l----~dr~g-------~r~~l~~~~~~  290 (418)
T TIGR00889       224 LQITNIFGNGFLHEF-GRNPEFAD-SFVVKNASIWMSLSQFSEIFFILTIPFF----LKRFG-------IKKVMLLSLVA  290 (418)
T ss_pred             HHHHHHhHHHHHHHh-cccccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHH
Confidence            111111111111110 00000000 000 011222233333344444444444    34543       33557788888


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHH
Q 008953          431 ATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYL  509 (547)
Q Consensus       431 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~-~~~~~G~~l  509 (547)
                      .+++...+.....          ...+.+.+++..++.++++++..+....++.|.+|++.|++++|+.+ ..+++|..+
T Consensus       291 ~~v~~~l~~~~~~----------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i  360 (418)
T TIGR00889       291 WALRFGFFAYGDP----------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL  360 (418)
T ss_pred             HHHHHHHHHHcCc----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence            8777666655310          01123445667788999999998998999999999999999999997 678999999


Q ss_pred             HHHHHHHHHHhhcC
Q 008953          510 SSLLVSFVNKVTSS  523 (547)
Q Consensus       510 g~~i~~~l~~~~~~  523 (547)
                      |+.+.+++.+..++
T Consensus       361 Gp~l~G~l~~~~g~  374 (418)
T TIGR00889       361 GYILSGVMVEKMFA  374 (418)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999886543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.80  E-value=6.4e-17  Score=170.71  Aligned_cols=173  Identities=14%  Similarity=0.142  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953           38 AAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG  117 (547)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~  117 (547)
                      .++.++...+...+.+ .+...+.+.+++++|.++.+.+++.+.+.++..++.++.|++.||+ |||+++.++.++..++
T Consensus         4 ~~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g   81 (410)
T TIGR00885         4 PFALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALG   81 (410)
T ss_pred             HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            3455555555555555 3444455566889999999999999999999999999999999997 9999999999999998


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953          118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN  197 (547)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  197 (547)
                      .+++..+..                      ..++..+++.|++.|+|.|...+...+++.+..|+++      |++..+
T Consensus        82 ~~l~~~~~~----------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~  133 (410)
T TIGR00885        82 AFLFWPAAE----------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLN  133 (410)
T ss_pred             HHHHHHHHh----------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHH
Confidence            877655421                      1356778899999999999999999999999888777      777788


Q ss_pred             hhhhHHhHhHHHHHHHHHHhhcc--------------------------cchhhHHHHHHHHHHHHHHH
Q 008953          198 AAYFAFSTGELVALTVLVWVQTH--------------------------SGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       198 ~~~~~~~ig~~~~~~i~~~l~~~--------------------------~g~~~~f~~~~~~~~~~l~~  240 (547)
                      +.+...++|..++|.+++.+...                          .+||++|++.++..++..+.
T Consensus       134 ~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       134 LAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999998877422                          36999998766654444333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.80  E-value=3.9e-17  Score=168.87  Aligned_cols=156  Identities=15%  Similarity=0.090  Sum_probs=116.4

Q ss_pred             HHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc----cchHHHH-HHHHHHHHHHHHHHHHhhccCCCC
Q 008953           57 GNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF----LGSFWTM-LIFGFVELSGFILLSVQAHLPQLK  131 (547)
Q Consensus        57 ~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Gr~~~~-~~~~~~~~i~~~l~~~~~~~~~~~  131 (547)
                      .....+.+.+++|+|.++.++.... .+...+ .++.|.++||+    +||||.+ +.+.++..+....+++..+     
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-----   79 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-----   79 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----
Confidence            3444445556789999999998655 333333 88999999996    4899975 5566666666555555421     


Q ss_pred             CCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHH
Q 008953          132 PPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVAL  211 (547)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~  211 (547)
                                       ..+.+.+....++.+++.+...+...+++.|.+|+++      |+++.++...+.++|.++++
T Consensus        80 -----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~  136 (356)
T TIGR00901        80 -----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSG  136 (356)
T ss_pred             -----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHH
Confidence                             1234445555666777778888888999999999887      99999999999999999999


Q ss_pred             HHHHHhhcccc--------hhhHHHHHHHHHHHHHHHHH
Q 008953          212 TVLVWVQTHSG--------MDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       212 ~i~~~l~~~~g--------~~~~f~~~~~~~~~~l~~~~  242 (547)
                      .+++++..+.|        ||..|++.++..+++++..+
T Consensus       137 ~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       137 SLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            99999988888        99999988776666555444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.79  E-value=1e-16  Score=162.16  Aligned_cols=362  Identities=14%  Similarity=0.037  Sum_probs=236.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      ++|+++ +....+...++.+.+...+.+++.+++|+|+.|.+++..+..+...+.+++-|.+.||+ |.|++..++.++.
T Consensus        12 ~~~~L~-~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~   89 (417)
T COG2223          12 ARRNLW-LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLL   89 (417)
T ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHH
Confidence            345554 55557777788888889999999999999999999999999999999999999999996 9999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .+-.+..+++...|                      +.+.+++.+++.|++.+-+ +...+.+.+.||+++      +|.
T Consensus        90 ~IP~~~~~~a~~~~----------------------~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~  140 (417)
T COG2223          90 LIPCLGLAFAVTYP----------------------STWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGL  140 (417)
T ss_pred             HHHHHHHHHHccCC----------------------chHHHHHHHHHHhccccee-hcccccccccCChhh------hhH
Confidence            99999998885422                      2367888888899876654 555688899999998      899


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccc---hhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhh
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSG---MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLK  271 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g---~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (547)
                      +.+++. ..|+|..+...+++++....|   |+....+..+.++++.+.+++..+..+.+++..++..+  .        
T Consensus       141 AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~--------  209 (417)
T COG2223         141 ALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--A--------  209 (417)
T ss_pred             HHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--h--------
Confidence            999998 899999999999999999888   99888888777777666666644433222222111100  0        


Q ss_pred             hcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHH
Q 008953          272 RKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII  351 (547)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (547)
                                                        .                       .+.+...++.+.+..+....+.
T Consensus       210 ----------------------------------~-----------------------~~~v~~~~~~W~lsllY~~tFG  232 (417)
T COG2223         210 ----------------------------------Q-----------------------LKAVFSNKDTWLLSLLYFATFG  232 (417)
T ss_pred             ----------------------------------H-----------------------HHHHhcCcchHHHHHHHHHHHH
Confidence                                              0                       0001111222332223333333


Q ss_pred             HHHHHh-hhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHH
Q 008953          352 FNTILA-QLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLF  429 (547)
Q Consensus       352 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~  429 (547)
                      -+..+. +.+.++..|       .  +... ..+......++...+..|+.+++.|        |   +...|.+.+.+.
T Consensus       233 ~Fvgfs~~l~~~~~~~-------f--g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsD--------R---~Gg~rv~~~~f~  292 (417)
T COG2223         233 GFVGFSAYLPMYLVTQ-------F--GLSPVTAGLIAFLFPLIGALARPLGGWLSD--------R---IGGRRVTLAVFV  292 (417)
T ss_pred             HHHHHHHHHHHHHHHh-------c--CCChhhHHHHHHHHHHHHHHHHhccchhhh--------h---ccchhHHHHHHH
Confidence            332222 222233222       1  1111 1122333334444445555555444        3   244455777777


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Q 008953          430 LATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYL  509 (547)
Q Consensus       430 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~l  509 (547)
                      .++++.........       ..+...+....+..++..++..++.+-...-.+...+|+ +-|...|+......+|++.
T Consensus       293 ~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~  364 (417)
T COG2223         293 GMALAAALLSLFLT-------GFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFF  364 (417)
T ss_pred             HHHHHHHHHHcccc-------ccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccc
Confidence            77777776665421       011112333344444444445454454444445555554 6788899999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 008953          510 SSLLVSFVNKVTSS  523 (547)
Q Consensus       510 g~~i~~~l~~~~~~  523 (547)
                      -|...+...+.|++
T Consensus       365 lp~~~g~~~~~tg~  378 (417)
T COG2223         365 LPLAFGVSLDLTGS  378 (417)
T ss_pred             hhHHHHHHHHhccc
Confidence            99999988887663

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.78  E-value=3.3e-16  Score=169.17  Aligned_cols=177  Identities=14%  Similarity=0.130  Sum_probs=137.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc----cchHHH-HHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF----LGSFWT-MLI  109 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Gr~~~-~~~  109 (547)
                      .+|+.+.++.+.+......+.....+|.++.+ .|.+..+.+...... .. .+..+++|.++||+    +||||. +.+
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~-~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVG-QA-YVFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH-HH-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence            45667778888888888888777888888765 699998888863222 22 36899999999993    188885 556


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953          110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS  189 (547)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~  189 (547)
                      +.+...++...+++..  |                    ..+...+.+.+++.+++.+...+...++..|.+|+++    
T Consensus        87 ~~i~~~~~~~~~a~~~--~--------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~----  140 (491)
T PRK11010         87 TQLLLLVAIAAMGFLE--P--------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE----  140 (491)
T ss_pred             HHHHHHHHHHHHHHcC--C--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh----
Confidence            6666767777766642  1                    1346667778888999888888889999999999887    


Q ss_pred             cccccchhhhhhHHhHhHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHHHHHH
Q 008953          190 KKLSSYFNAAYFAFSTGELVALTVLVWVQT-HSGMDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       190 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~-~~g~~~~f~~~~~~~~~~l~~~~  242 (547)
                        |+++.++...+.++|..+++.+.+++.+ ..|||..|++.++..++..+..+
T Consensus       141 --rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        141 --RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence              8999999999999999999999999988 56999999987766555544443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.78  E-value=2.6e-17  Score=174.50  Aligned_cols=346  Identities=15%  Similarity=0.170  Sum_probs=220.3

Q ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccc
Q 008953           67 EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEE  146 (547)
Q Consensus        67 ~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (547)
                      +++++..|.+++.+.+..+..++.+++|+++||+ |-|+++..+.++.++++++...+.+..                  
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~~------------------  127 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASIG------------------  127 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            5788999999999999999999999999999997 999999999999999999999987632                  


Q ss_pred             cccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc-cchhh
Q 008953          147 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-SGMDV  225 (547)
Q Consensus       147 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~-~g~~~  225 (547)
                           ...+++.|+++|++.|...|.+..+.+++.|+++      |++..++.+.+..+|.+++..+.|++++. .||++
T Consensus       128 -----~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s  196 (466)
T KOG2532|consen  128 -----FYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS  196 (466)
T ss_pred             -----chhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence                 2357899999999999999999999999999988      99999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchh
Q 008953          226 GFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFR  305 (547)
Q Consensus       226 ~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (547)
                      +|++.+...++..++++..-.+.+.+++.-++     +.+...-+.+..                +     .        
T Consensus       197 ifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~-----~El~~I~~~k~~----------------~-----~--------  242 (466)
T KOG2532|consen  197 IFYVFGIVGLIWFILWFLFYSDSPSKHPNISE-----KELKYIEKGKSE----------------A-----H--------  242 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCH-----HHHHHHHhcccc----------------c-----c--------
Confidence            99998777666555444432222111111110     000000000000                0     0        


Q ss_pred             HhhhhhhccccCCCCCCCCCcc-ccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCccee-Ccc
Q 008953          306 FLDKACIKVEDGTNKKESPWRL-CTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV-PPA  383 (547)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~  383 (547)
                                 .......||+. +++.     ..+-..+..+.-...++....+.|+++..       -+  ++++ .++
T Consensus       243 -----------~~~~~~vP~~~i~ts~-----~vwai~~~~f~~~~~~~~l~~y~PtY~~~-------VL--~f~v~~~G  297 (466)
T KOG2532|consen  243 -----------VKKKPPVPYKAILTSP-----PVWAIWISAFGGNWGFYLLLTYLPTYLKE-------VL--GFDVRETG  297 (466)
T ss_pred             -----------cCCCCCCCHHHHHcCH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------Hh--CCChhhhh
Confidence                       00002334441 1111     11111222333444444555555554432       11  2233 234


Q ss_pred             cccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHH
Q 008953          384 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI--GFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  461 (547)
Q Consensus       384 ~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i--~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  461 (547)
                      ...++..+...+...+.+.+.|++.+| ...   .+..+++  .++....++.++.+++...            -+.+ .
T Consensus       298 ~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~------------~~~~-~  360 (466)
T KOG2532|consen  298 FLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD------------EHRL-L  360 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC------------Ccch-H
Confidence            455555566666666666666666554 221   2333444  4455555555666555421            1121 1


Q ss_pred             HHHHHHHHHHHHHHh-HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          462 TPQFLIFGLSEMFTA-VGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  519 (547)
Q Consensus       462 ~~~~~l~g~g~~~~~-~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~  519 (547)
                      .+.....+.+..... +..+.-..+.+ +++-+..+|+.++...+.++++|++++.+.+
T Consensus       361 a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~  418 (466)
T KOG2532|consen  361 AVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT  418 (466)
T ss_pred             HHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence            222222222222222 33222233335 4779999999999999999999999998875

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.77  E-value=1.5e-16  Score=172.96  Aligned_cols=136  Identities=14%  Similarity=0.166  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhH
Q 008953           74 NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKAS  153 (547)
Q Consensus        74 ~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (547)
                      +.+++.+...++..++.+++|+++|++ |||++++++.+++.+|.++++++                         .+..
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a-------------------------~~~~  143 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA-------------------------PSWY  143 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh-------------------------hhHH
Confidence            448999999999999999999999996 99999999999999999999998                         4577


Q ss_pred             HHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc--cchhhHHHHHH
Q 008953          154 IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH--SGMDVGFGVSA  231 (547)
Q Consensus       154 ~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~--~g~~~~f~~~~  231 (547)
                      .++++|++.|+|.|+.....+.+++|..|++.      |+...+.++...++|..++..+ ++...+  .+||..+.+..
T Consensus       144 ~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~-~~~~~~~~~~Wr~~~~~~~  216 (513)
T KOG0254|consen  144 QLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCI-NYGTSKVYAGWRIPLGLAL  216 (513)
T ss_pred             HHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHH-hhhhccCCccHHHHHHHHH
Confidence            89999999999999999999999999999888      9999999999999999999555 555444  48998888776


Q ss_pred             HHHHHHHHHHH
Q 008953          232 AAMALGLFGVV  242 (547)
Q Consensus       232 ~~~~~~l~~~~  242 (547)
                      +..++..+.++
T Consensus       217 i~~~~~~~~~~  227 (513)
T KOG0254|consen  217 IPAVILALGML  227 (513)
T ss_pred             HHHHHHHHHHH
Confidence            66555554433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.76  E-value=4.9e-17  Score=170.86  Aligned_cols=140  Identities=13%  Similarity=0.077  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHH
Q 008953           75 SANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASI  154 (547)
Q Consensus        75 ~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (547)
                      -+.+++++.++.++++.++|+++||+ |||..+.++.++..++.+++.++...                      ....+
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~----------------------~~~e~  118 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA----------------------PSFEM  118 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh----------------------hhHHH
Confidence            35668889999999999999999997 99999999999888888888776542                      34567


Q ss_pred             HHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHH--HhhcccchhhHHHHHHH
Q 008953          155 FFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLV--WVQTHSGMDVGFGVSAA  232 (547)
Q Consensus       155 ~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~--~l~~~~g~~~~f~~~~~  232 (547)
                      +.++|++.|+..|......+.++.|..|.+-      ||..-....++..+|..++..++.  .+.+...|.+.+....+
T Consensus       119 li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i  192 (485)
T KOG0569|consen  119 LILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLI  192 (485)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHH
Confidence            9999999999999999999999999999998      898888888899999998866643  34455569888888777


Q ss_pred             HHHHHHHHHHH
Q 008953          233 AMALGLFGVVS  243 (547)
Q Consensus       233 ~~~~~l~~~~~  243 (547)
                      ..++.++....
T Consensus       193 ~~~~~l~~l~~  203 (485)
T KOG0569|consen  193 PALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHhc
Confidence            76666655554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.75  E-value=1.1e-15  Score=164.68  Aligned_cols=389  Identities=13%  Similarity=-0.002  Sum_probs=212.6

Q ss_pred             HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953           58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM  137 (547)
Q Consensus        58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  137 (547)
                      .....++.+++|-+ .+..|+.+...+...++.++.|.++|.+ |||..++.+.++..+|.+.++.+.            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            34557888889876 4567888889999999999999999996 999999999999999999999874            


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh
Q 008953          138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV  217 (547)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l  217 (547)
                                   +...++++-.+.|+|.|... .....++|..|.+.      |..+..+.....-+....+|.++..+
T Consensus       130 -------------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~  189 (599)
T PF06609_consen  130 -------------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLF  189 (599)
T ss_pred             -------------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHh
Confidence                         46668999999999977665 44556899998766      66665555444444445667776666


Q ss_pred             hcccchhhHHHHHHHHHHHHHHH-HHHcCce-eeccCCCCCCchhHHH------HHHHHHhhhcccCCCCcccccccCCC
Q 008953          218 QTHSGMDVGFGVSAAAMALGLFG-VVSGTLY-YRNKRPQGSIFTPIAQ------VFVAAMLKRKQICPSNPQMLHGLNQN  289 (547)
Q Consensus       218 ~~~~g~~~~f~~~~~~~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (547)
                      ..+.+|||.|++.++...++++. +++.++. +++.+.++.+.++.++      .+.....-.....+.+=.-..     
T Consensus       190 ~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~-----  264 (599)
T PF06609_consen  190 AAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYP-----  264 (599)
T ss_pred             ccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC-----
Confidence            66778999999987765555433 3333322 2221222222222221      111111111111111100000     


Q ss_pred             CCCCCCCccccccchhHhhhhhhcccc-CCCCCC-C-CCccccchhHHHHHHHHhH-HHHHHHHHHHHHHHhhhhhhhhh
Q 008953          290 NVPNDSGSVFLTQRFRFLDKACIKVED-GTNKKE-S-PWRLCTVTQVEQVKVLISV-VPIFACTIIFNTILAQLQTFSVQ  365 (547)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  365 (547)
                      ...+.+.+.     +..+-........ ...+.+ . +....+.+-.+++|.+... +..++....++.....++.    
T Consensus       265 ~~~W~Sa~V-----Ia~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~----  335 (599)
T PF06609_consen  265 YYPWKSAHV-----IAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQ----  335 (599)
T ss_pred             CCCCCCccc-----hhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            000111111     0000000000000 001111 0 1112233333333222221 2222222333333222222    


Q ss_pred             hhhhcc-ccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          366 QGSAMN-NKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKK  444 (547)
Q Consensus       366 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~  444 (547)
                      |...+- .... +. ....+......++...+..+...+.    ++.+      +.++.+.++.+++.++...++....+
T Consensus       336 ~~~~vf~~d~~-~~-~~~~~~s~~~~fg~~~g~~i~g~l~----~~ir------~~Kw~li~~~~~~ta~~Gama~~~~~  403 (599)
T PF06609_consen  336 QVVNVFGSDPI-SI-TEIGWISSPVGFGSCAGAVILGLLF----SKIR------HIKWQLIFGSVLMTAFCGAMAAVRPD  403 (599)
T ss_pred             HHhhhccCCCc-cc-ceeehhhhhHHHHHHHHHHHHHHHH----HHcc------chhHHHHHHHHHHHHHHHHHHHccCC
Confidence            211111 1100 00 0112233333444444443333332    2321      23455677777777666666554221


Q ss_pred             hhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          445 RRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  518 (547)
Q Consensus       445 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~  518 (547)
                                ..+.  .+...++.++|.+.........+.-..|++..|+++|+....+.+|+.+|..+...+.
T Consensus       404 ----------n~~~--~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  404 ----------NKNA--AIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             ----------Ccch--HHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                      1122  2344567888888888888888888999999999999999999999999999876543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.74  E-value=6.9e-15  Score=154.91  Aligned_cols=167  Identities=14%  Similarity=0.078  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc----cchHH-HHHHHHHHHHHH
Q 008953           43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF----LGSFW-TMLIFGFVELSG  117 (547)
Q Consensus        43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Gr~~-~~~~~~~~~~i~  117 (547)
                      ....+.+...+.....-+|.|+++ .|++.++.+++......  .+..+++|+++||+    +|||| .++++.++..++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            344555566666666778999975 69999999999776665  68999999999995    17765 677777777777


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953          118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN  197 (547)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  197 (547)
                      ..++.+...                      ..+.+.+++..++.++..+...+...+++.|.+|+++      |+++.+
T Consensus        82 ~~~l~~~~~----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~  133 (402)
T PRK11902         82 IAAMAFCPP----------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAA  133 (402)
T ss_pred             HHHHHhcCc----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHH
Confidence            777666411                      1334556666666777788888899999999999888      899999


Q ss_pred             hhhhHHhHhHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHH
Q 008953          198 AAYFAFSTGELVALTVLVWVQTH-SGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       198 ~~~~~~~ig~~~~~~i~~~l~~~-~g~~~~f~~~~~~~~~~l~~  240 (547)
                      +...+.++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus       134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            99988999999999998888875 59999999877655554443

>PRK09669 putative symporter YagG; Provisional

Probab=99.72  E-value=4.5e-15  Score=158.48  Aligned_cols=178  Identities=12%  Similarity=-0.029  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHH-HHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFW-TMLIFGF  112 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~-~~~~~~~  112 (547)
                      |..+.-.+..+..++....+..+++.|+++++|++..+++.+..+..+..++..|+.|+++||.   +|||| .++++.+
T Consensus         9 ~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~   88 (444)
T PRK09669          9 KDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAI   88 (444)
T ss_pred             HHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHH
Confidence            4444444556667777777788999999999999999999999999999999999999999993   27755 4556666


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC-CCcccccc
Q 008953          113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ-SNPKQSKK  191 (547)
Q Consensus       113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~  191 (547)
                      ...+..+++....+.+                   .......+++...+.+.+.........++.+|+.++ ++      
T Consensus        89 ~~~i~~~l~f~~p~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------  143 (444)
T PRK09669         89 PFGVVCLLTFYTPDFG-------------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------  143 (444)
T ss_pred             HHHHHHHHHHhCCCCC-------------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------
Confidence            6666665554431100                   012344455555556666656666677888998754 33      


Q ss_pred             cccchhhhhhHHhHhHHHHHHHHHHhhc-------ccchhhHHHHHHHHHHHHHH
Q 008953          192 LSSYFNAAYFAFSTGELVALTVLVWVQT-------HSGMDVGFGVSAAAMALGLF  239 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~-------~~g~~~~f~~~~~~~~~~l~  239 (547)
                      |.+..++.....++|..+++.+...+..       ..||+..+.+.++..++..+
T Consensus       144 R~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~  198 (444)
T PRK09669        144 RHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF  198 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence            7777788777778887777665443322       23577666665554444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.72  E-value=1.5e-14  Score=153.56  Aligned_cols=405  Identities=13%  Similarity=0.047  Sum_probs=229.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhh----cccchHHHHHHH-H
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSD----SFLGSFWTMLIF-G  111 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Gr~~~~~~~-~  111 (547)
                      ++++.++.+.+..++++-...+++++|+ +++|.+..+.+++..+..+...+..|+.|+++|    |+ ||||.++++ .
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~   81 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGA   81 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHH
Confidence            5677788888888888888888888887 569999999999999999999999999999999    46 999998875 5


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953          112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK  191 (547)
Q Consensus       112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~  191 (547)
                      +...++.++++.+.++..+..++.+   ++     ........+.++..+..++.....+...++++|.+|+++++    
T Consensus        82 ~~~~~~l~ll~~~~~~~~~~~~~~~---~~-----~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----  149 (477)
T TIGR01301        82 ALVAFAVILIGFAADIGHLFGDNLD---KK-----TKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----  149 (477)
T ss_pred             HHHHHHHHHHHhCchhhhhcccccc---cc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----
Confidence            5566666777665432221110000   00     00011123334444455677777778889999999987621    


Q ss_pred             cccchhhhhhHHhHhHHHHHHHHHHh--hccc-------------chhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCC
Q 008953          192 LSSYFNAAYFAFSTGELVALTVLVWV--QTHS-------------GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS  256 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i~~~l--~~~~-------------g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  256 (547)
                      ++.++++.....++|..+|+.++++.  .+..             +.+..|++.++..++..+......++.+..++++.
T Consensus       150 ~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~  229 (477)
T TIGR01301       150 TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF  229 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc
Confidence            35688889999999999999998865  2211             46788888777777666655554444321111100


Q ss_pred             CchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHH
Q 008953          257 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQV  336 (547)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (547)
                      + ++                    +    .++.++        ......+.+                       -.+..
T Consensus       230 ~-~~--------------------~----~~~~~~--------~~~~~~~~~-----------------------i~~~~  253 (477)
T TIGR01301       230 I-NS--------------------E----AAPPSK--------HGEEAFFGE-----------------------LFGAF  253 (477)
T ss_pred             h-hh--------------------h----cccccc--------cchhhhHHH-----------------------HHHHH
Confidence            0 00                    0    000000        000000000                       01111


Q ss_pred             HHHHhH-HHHHHHHHHHHHHHh---hhhhhhhhhhhhc--cccCCCcceeC---cccccccchhhHHHHHhhhhhhhhhh
Q 008953          337 KVLISV-VPIFACTIIFNTILA---QLQTFSVQQGSAM--NNKLTKNFHVP---PASLQSIPYIMLVILVPLYDKFFVPF  407 (547)
Q Consensus       337 ~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~  407 (547)
                      ++.... -.++..++..|+.+.   ...+-++.+.-+-  +..-. .+...   ..+....+.+...    +...++.++
T Consensus       254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~-~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l  328 (477)
T TIGR01301       254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA-KYDDGVRAGAFGLMLNSVVLG----ITSIGMEKL  328 (477)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            111110 111222233332222   2222222111000  00000 00000   0011111122222    223333344


Q ss_pred             hhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCC-----CCccc-hHHHHHHHHHHHHHHHHHhHHHH
Q 008953          408 ARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDS-ALDS-----GKTLS-IFSITPQFLIFGLSEMFTAVGLI  480 (547)
Q Consensus       408 ~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~-~~~~-----~~~~~-~~~l~~~~~l~g~g~~~~~~~~~  480 (547)
                      .+|.++|+      +.-.++.++.+++++...+......+. +.++     ...+. .+.+++.+.+.|+.........+
T Consensus       329 ~~~~g~~k------~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPf  402 (477)
T TIGR01301       329 CRGWGAGK------RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPF  402 (477)
T ss_pred             HHHhccch------hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence            45554321      334678788888888777654211000 0000     01112 36677788899999999999999


Q ss_pred             HHHHhhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008953          481 EFFYKQSLK--GMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTS  522 (547)
Q Consensus       481 ~~~~~~~p~--~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~  522 (547)
                      +.+++..|+  +.+|..+|+.|....+.+.+.+...+.+.+..+
T Consensus       403 al~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g  446 (477)
T TIGR01301       403 ALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG  446 (477)
T ss_pred             HHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999995  455999999999999999999998888666544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.70  E-value=6.8e-15  Score=146.26  Aligned_cols=121  Identities=18%  Similarity=0.129  Sum_probs=106.2

Q ss_pred             hhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccc
Q 008953           66 NEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCE  145 (547)
Q Consensus        66 ~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  145 (547)
                      ++.+.+..-+|.+-+.|.+..++.++.+|.++||| |||++++++++..++...+.+.+                     
T Consensus        61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S---------------------  118 (451)
T KOG2615|consen   61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS---------------------  118 (451)
T ss_pred             CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            34445566789999999999999999999999998 99999999999999988888887                     


Q ss_pred             ccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhc
Q 008953          146 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT  219 (547)
Q Consensus       146 ~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~  219 (547)
                          .++..+.++|++.|+..|-. ....++++|.+++++      |+.+++....+..+|.++||+++|++..
T Consensus       119 ----~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  119 ----RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ----HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence                34556777799999988865 456799999999988      9999999999999999999999999988

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.70  E-value=7.4e-15  Score=152.63  Aligned_cols=156  Identities=10%  Similarity=0.005  Sum_probs=135.2

Q ss_pred             hhHHHHHHHhhhhcCCChhh-HHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008953           55 AVGNNLITYVINEMHFSLSN-SANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPP  133 (547)
Q Consensus        55 ~~~~~l~~yl~~~lg~~~~~-~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  133 (547)
                      ...++..+|+.+++|+++.| .+.+.+.+..++.++.+++|+++||+ |.|+++.++.+...+..++++++.        
T Consensus        43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~--------  113 (511)
T TIGR00806        43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT--------  113 (511)
T ss_pred             chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH--------
Confidence            34577788999999999999 99999999999999999999999996 999999999999999999999874        


Q ss_pred             CCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHH
Q 008953          134 KCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTV  213 (547)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i  213 (547)
                                       +...+.+.|++.|++.|... ....++...+|+++      |+++.++.+.+.++|.++++.+
T Consensus       114 -----------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L  169 (511)
T TIGR00806       114 -----------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVL  169 (511)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                             36679999999999999999 88999999999888      9999999999999999999999


Q ss_pred             HHHhhcccchhhHHH---HHHHHHHHHHHHHHHc
Q 008953          214 LVWVQTHSGMDVGFG---VSAAAMALGLFGVVSG  244 (547)
Q Consensus       214 ~~~l~~~~g~~~~f~---~~~~~~~~~l~~~~~~  244 (547)
                      ++++ ..+||++-+.   ++.....+++++.++.
T Consensus       170 ~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L  202 (511)
T TIGR00806       170 GQLL-VTLGWISYSTLNIISLVFMTFSVFLALFL  202 (511)
T ss_pred             HHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            9994 4678986543   4455555666555553

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.70  E-value=1.8e-15  Score=167.54  Aligned_cols=197  Identities=16%  Similarity=0.141  Sum_probs=148.8

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      +|.+...+....+....+.+......+.+.++++++..+.|++.+.+.++..++.++.|+++||+ ||||.+.++.++.+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~  109 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence            45444444445555556667777777888899999999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCC-------C-----------CCC----------cccccc--cchhHHHHHHHHHHHHh
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMV-------T-----------DSE----------NCEEAK--GFKASIFFLALYLVAIG  165 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~-------~-----------~~~----------~~~~~~--~~~~~~~~~~~~l~gig  165 (547)
                      ++.+++++...+    .++|+..       +           ++.          .+....  ...+..++++|+++|+|
T Consensus       110 lg~ll~alphf~----~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG  185 (633)
T TIGR00805       110 LGSFLLSLPHFL----SGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIG  185 (633)
T ss_pred             HHHHHHhChHHh----cCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhcc
Confidence            999998875321    1111100       0           000          010001  12356788999999999


Q ss_pred             ccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhccc---------------------c-h
Q 008953          166 SGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS---------------------G-M  223 (547)
Q Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~---------------------g-~  223 (547)
                      .+...+...+++.|.+|+++      |+.++++++....+|.++|+++++++.+.+                     | |
T Consensus       186 ~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaW  259 (633)
T TIGR00805       186 ATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAW  259 (633)
T ss_pred             CCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHH
Confidence            99999999999999999988      999999999999999999999999887542                     2 6


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 008953          224 DVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       224 ~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +..|++.+++.++..+.++.
T Consensus       260 wl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       260 WIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            77787766655554444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.70  E-value=1.3e-14  Score=156.14  Aligned_cols=368  Identities=9%  Similarity=-0.042  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhh----cccch-HHHHHHHHHHH
Q 008953           40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSD----SFLGS-FWTMLIFGFVE  114 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Gr-~~~~~~~~~~~  114 (547)
                      +.-.+..+..++....+..+++.|+++.+|+++..+|.+..+.-+..++..|+.|+++|    |+ || |+.++++.+..
T Consensus         9 ~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~   87 (473)
T PRK10429          9 LSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLAN   87 (473)
T ss_pred             HhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHH
Confidence            33445666777888888899999999999999999999999999999999999999999    65 98 55556677777


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCC-CCCcccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFD-QSNPKQSKKLS  193 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~-~~~~~~~~~r~  193 (547)
                      .++.+++....+.+                   .......+++...+..++.........++.+|..+ +++      |.
T Consensus        88 ~i~~~llf~~p~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~  142 (473)
T PRK10429         88 SVVLFLLFSAHLFE-------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------RE  142 (473)
T ss_pred             HHHHHHHHcCCCCC-------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HH
Confidence            77766664321100                   01123344455556677777777788889899885 444      78


Q ss_pred             cchhhhhhHHhHhHHHHHHHHHHhhc-------ccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHH
Q 008953          194 SYFNAAYFAFSTGELVALTVLVWVQT-------HSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFV  266 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~~l~~-------~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (547)
                      +..++-....++|+.+.+.+...+..       ..+|+....+.++..+++.+..+...++.. ++++.++.        
T Consensus       143 ~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~-~~~~~~~~--------  213 (473)
T PRK10429        143 QLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY-SSDNQVSA--------  213 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC-Cccccccc--------
Confidence            88887666677776666555443321       124555544444443433333332222211 00000000        


Q ss_pred             HHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHH
Q 008953          267 AAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIF  346 (547)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (547)
                                                       ..++.+..+..+                   ...++ |.+...   +
T Consensus       214 ---------------------------------~~~~~~~~~~~~-------------------~~~~n-~~~~~l---l  237 (473)
T PRK10429        214 ---------------------------------EGSHLTLKDIVA-------------------LIYKN-DQLSCL---L  237 (473)
T ss_pred             ---------------------------------cccCCCHHHHHH-------------------HHhcC-HHHHHH---H
Confidence                                             000000011000                   00011 111111   1


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHH
Q 008953          347 ACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGF  426 (547)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~  426 (547)
                      ...+..+.......+...+.   .....+  .....+.+..+..+..++..++..++    .+|.+       +++.+.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~y~---~~y~~~--~~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~g-------kk~~~~~  301 (473)
T PRK10429        238 GMALAYNIASNIINGFAIYY---FTYVIG--DADLFPYYLSYAGAANLVTLILFPRL----VKSLS-------RRILWAG  301 (473)
T ss_pred             HHHHHHHHHHHHHhhheeeE---EEEECC--CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcC-------cHHHHHH
Confidence            11222222222111111111   000110  00001122223334445555555544    34443       3344566


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc-------hhhHHHHHHHH
Q 008953          427 GLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFLTAMT  499 (547)
Q Consensus       427 g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~rg~~~g~~  499 (547)
                      +.++..++.+.+......         ...+.+.+++..++.+++.+...+..+++..|..+       .+..|...|..
T Consensus       302 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~  372 (473)
T PRK10429        302 ASIFPVLSCGVLLLMGLA---------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQ  372 (473)
T ss_pred             HHHHHHHHHHHHHHHhcc---------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHH
Confidence            666655555444322000         01234555667778899999999888899998876       44467789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC
Q 008953          500 YCSYSFGFYLSSLLVSFVNKVTSS  523 (547)
Q Consensus       500 ~~~~~~G~~lg~~i~~~l~~~~~~  523 (547)
                      ++...+|..+++.+.+++.+..+-
T Consensus       373 ~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        373 TMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999998886553

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.69  E-value=1.3e-13  Score=144.38  Aligned_cols=351  Identities=13%  Similarity=0.071  Sum_probs=198.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHH
Q 008953           41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFIL  120 (547)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l  120 (547)
                      .+....++..+.+-...++++.|+++ .|+|..|.|.+.+...+...+.+++.|+++||+..+||.+.+..++..+...+
T Consensus         6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~   84 (400)
T PF03825_consen    6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL   84 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence            45555666666666677889999976 78999999999999999999999999999999745677776666655554444


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhh
Q 008953          121 LSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY  200 (547)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  200 (547)
                      ....                         .+.+.+++..++..+......|...++..+...+        +++-++...
T Consensus        85 ~~~~-------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iR  131 (400)
T PF03825_consen   85 LAFS-------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIR  131 (400)
T ss_pred             HHHh-------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcch
Confidence            4433                         2234455555556666666666666666665542        233366666


Q ss_pred             hHHhHhHHHHHHH-HHHhhcccc---hhhHHHHHHHHHHH-HHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953          201 FAFSTGELVALTV-LVWVQTHSG---MDVGFGVSAAAMAL-GLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI  275 (547)
Q Consensus       201 ~~~~ig~~~~~~i-~~~l~~~~g---~~~~f~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (547)
                      .-+++|-+++... .+++....+   ..+.+++.+...++ +...+.  .++.   +++++...+               
T Consensus       132 lwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~--lp~~---~~~~~~~~~---------------  191 (400)
T PF03825_consen  132 LWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF--LPKT---PPKRSAKES---------------  191 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh--CCCC---ccccccCCC---------------
Confidence            6677777766443 233333322   22345544433222 222221  1221   111110000               


Q ss_pred             CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHH
Q 008953          276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTI  355 (547)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (547)
                                               .++....+..               +     -.++++.....+..++.++.. ..
T Consensus       192 -------------------------~~~~~~~~~~---------------~-----llk~~~~~~Fll~~~l~~~~~-~~  225 (400)
T PF03825_consen  192 -------------------------VKKLLGLDAL---------------K-----LLKNPRFLVFLLAAFLIGISH-AA  225 (400)
T ss_pred             -------------------------cccccchHHH---------------H-----HhcCccHHHHHHHHHHHHHHH-HH
Confidence                                     0000000000               0     011111111111111222222 22


Q ss_pred             HhhhhhhhhhhhhhccccCCCcceeC-cccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953          356 LAQLQTFSVQQGSAMNNKLTKNFHVP-PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS  434 (547)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~  434 (547)
                      ++...+.+..+..        ++... .+....+..+        .|....-+.+|.-+|   ++.++.+.++.+..++-
T Consensus       226 ~~~f~~~yl~~~g--------g~~~~~~g~~~~l~~~--------aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR  286 (400)
T PF03825_consen  226 YYTFFSIYLQELG--------GYSGSTIGILWALGVV--------AEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVR  286 (400)
T ss_pred             HHHHHHHHHHHcc--------cchhhHHHHHHHHHHH--------HHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHH
Confidence            2222222222111        01000 1111112222        222221122233333   46778899999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCccchHH----HHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHH-HHHHHHHH
Q 008953          435 MISAALMEKKRRDSALDSGKTLSIFS----ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC-SYSFGFYL  509 (547)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~-~~~~G~~l  509 (547)
                      ..+++...             .+.+.    +.....++|+..++...+...|+.+.+|++.|++++++++. ..++|+.+
T Consensus       287 ~~l~a~~~-------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i  353 (400)
T PF03825_consen  287 WLLYAYFS-------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAI  353 (400)
T ss_pred             HHHHHHhc-------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH
Confidence            99888762             13222    23334579999999999999999999999999999999886 57999999


Q ss_pred             HHHHHHHHHHhhcC
Q 008953          510 SSLLVSFVNKVTSS  523 (547)
Q Consensus       510 g~~i~~~l~~~~~~  523 (547)
                      |..+.|++.+..+.
T Consensus       354 G~~igG~l~~~~g~  367 (400)
T PF03825_consen  354 GSLIGGWLYDAFGA  367 (400)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999986544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.69  E-value=8.8e-14  Score=145.83  Aligned_cols=176  Identities=15%  Similarity=-0.006  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHH--HHHHHHHHHHHHhhh-hHHhhcccchHHHHHHHHHHH-
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANI--VTNFIGTVFLLALLG-GYLSDSFLGSFWTMLIFGFVE-  114 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i--~~~~~~~~~~~~~~~-G~laDr~~Gr~~~~~~~~~~~-  114 (547)
                      ...+....+.+...+....+.+|.|+++ .|.+..+.|..  .........+..++. ++.+||+ ||||..++...+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            4456666777777777777888888864 79999999997  355677777777777 6689996 9999876654332 


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .+....+....  +.                   ......+.....+.++..+...+...++..|..++++      ++.
T Consensus        81 ~~~~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~  133 (390)
T TIGR02718        81 SACLASLALVG--PD-------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAK  133 (390)
T ss_pred             HHHHHHHHcCC--cc-------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhH
Confidence            21222222110  00                   0111222333333444455555555556566555444      566


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +.+....+..+|..+++.+.+++.++.|||..|++.++..++..+..+.
T Consensus       134 ~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       134 GNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            6666767778899999988889999999999999887766655554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09848 glucuronide transporter; Provisional

Probab=99.68  E-value=4.7e-14  Score=150.76  Aligned_cols=366  Identities=10%  Similarity=-0.013  Sum_probs=196.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHHHH-HHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFWTM-LIFGF  112 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~-~~~~~  112 (547)
                      +..+.-.+..+..++.+.....+++.|+++.+|++..++|.+.....+...+..++.|+++||.   +||||.. .++.+
T Consensus         8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~   87 (448)
T PRK09848          8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA   87 (448)
T ss_pred             HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence            3333444566677777777778899999999999999999999999999999999999999994   3777754 55555


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      ...+...++.....  .                .........+++...+.+++.+...+...++..++.++.+  +   |
T Consensus        88 ~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---r  144 (448)
T PRK09848         88 PLMIFSVLVFWVPT--D----------------WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S---R  144 (448)
T ss_pred             HHHHHHHHHHhCcC--C----------------CCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H---H
Confidence            55544444322110  0                0001122334445556777778888777777776665432  1   5


Q ss_pred             ccchhhhhhH-----HhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHH
Q 008953          193 SSYFNAAYFA-----FSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVA  267 (547)
Q Consensus       193 ~~~~~~~~~~-----~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (547)
                      .+..++-.+.     .+++..++|.+.+.........+..+. .+..+++++..+......+..++++.+.....+.+..
T Consensus       145 ~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  223 (448)
T PRK09848        145 ARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQT  223 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHHHHH
Confidence            5555544332     345666677665543221111111111 1111222221111111111110000000000000000


Q ss_pred             HHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHH
Q 008953          268 AMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFA  347 (547)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (547)
                                                                                      ..++++...    ...
T Consensus       224 ----------------------------------------------------------------l~~n~~f~~----~~~  235 (448)
T PRK09848        224 ----------------------------------------------------------------LKRNRPLFM----LCI  235 (448)
T ss_pred             ----------------------------------------------------------------HhCCchHHH----HHH
Confidence                                                                            001111111    111


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccc-hhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHH
Q 008953          348 CTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIP-YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGF  426 (547)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~  426 (547)
                      ...+.+..+....+...+   ..+..++  .....+.+...+ .+..++..++..++    .+|.       ++++.+.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~---~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~r~-------g~~~~~~~  299 (448)
T PRK09848        236 GALCVLISTFAVSASSLF---YVRYVLN--DTGLFTVLVLVQNLVGTVASAPLVPGM----VARI-------GKKNTFLI  299 (448)
T ss_pred             HHHHHHHHHHHHhhhhee---eEeeecC--ChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-------CcHHHHHH
Confidence            112222222222211110   1111111  000001111111 22334444444433    3343       34466788


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchh-------hHHHHHHHH
Q 008953          427 GLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG-------MQAFLTAMT  499 (547)
Q Consensus       427 g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~-------~rg~~~g~~  499 (547)
                      |.++.+++.+...+..            ..+.+.+.+..++.++|+++..+..++...+..|.+       .+|...|++
T Consensus       300 g~~~~~i~~~~~~~~~------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~  367 (448)
T PRK09848        300 GALLGTCGYLLFFWVS------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLF  367 (448)
T ss_pred             HHHHHHHHHHHHHHcC------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHH
Confidence            8888877776665431            234555666778899999999999999999888765       469999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Q 008953          500 YCSYSFGFYLSSLLVSFVNKVTS  522 (547)
Q Consensus       500 ~~~~~~G~~lg~~i~~~l~~~~~  522 (547)
                      ++.+.+|..+++.+.+.+.+..+
T Consensus       368 ~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        368 SFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999998887654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.66  E-value=9.2e-15  Score=155.29  Aligned_cols=359  Identities=13%  Similarity=0.028  Sum_probs=223.3

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhh----cccchHHHHH-HHHHHHHHHHHH
Q 008953           46 QAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSD----SFLGSFWTML-IFGFVELSGFIL  120 (547)
Q Consensus        46 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Gr~~~~~-~~~~~~~i~~~l  120 (547)
                      .+..++.......++..|+++.+|+++..++.+..+..+..++..|+.|.++|    |+ ||||..+ ++.+...++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            45556666667778999999999999999999999999999999999999999    76 9777555 566777777777


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhh
Q 008953          121 LSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY  200 (547)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  200 (547)
                      +....  |.-               .........+++..++..++.........++.+|..++++  +   |.+..++-.
T Consensus        89 lf~~~--p~~---------------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--~---R~~l~~~~~  146 (428)
T PF13347_consen   89 LFSPP--PAG---------------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--E---RTRLSSWRM  146 (428)
T ss_pred             hhccc--cch---------------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--h---hhhHHHHHH
Confidence            66530  100               0111233345666666788888888888999999988542  1   788888877


Q ss_pred             hHHhHhHHHHHHHHHHhhccc-------chhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhc
Q 008953          201 FAFSTGELVALTVLVWVQTHS-------GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRK  273 (547)
Q Consensus       201 ~~~~ig~~~~~~i~~~l~~~~-------g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (547)
                      ....+|..+...+.+.+.+..       +|++...+.++..++..+......++.+.+++++++...             
T Consensus       147 ~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~-------------  213 (428)
T PF13347_consen  147 IFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKIS-------------  213 (428)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccc-------------
Confidence            777777766555655543222       577777766655555555444433331111111110000             


Q ss_pred             ccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHH
Q 008953          274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFN  353 (547)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (547)
                                                      +.+.               ++    +-.+++. +..   ++...++.+
T Consensus       214 --------------------------------~~~~---------------~~----~~~~nr~-~~~---l~~~~~~~~  238 (428)
T PF13347_consen  214 --------------------------------LRDS---------------LR----SLFRNRP-FRI---LLLAFFLQW  238 (428)
T ss_pred             --------------------------------cccc---------------hh----hhcccch-HHH---HHHHHHHHH
Confidence                                            0000               00    0011111 111   111222222


Q ss_pred             HHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 008953          354 TILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATF  433 (547)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i  433 (547)
                      .......+...+...+   .++  .....+.+.....+..++..|+..++.    +|.++|       +.+..+.++.++
T Consensus       239 ~~~~~~~~~~~y~~~~---vl~--~~~~~~~~~~~~~~~~~v~~~~~~~l~----~r~gk~-------~~~~~~~~~~~~  302 (428)
T PF13347_consen  239 LAFALMNTFLPYYFTY---VLG--NEGLISIFMLIFFVASIVGSPLWGRLS----KRFGKK-------KVYIIGLLLAAL  302 (428)
T ss_pred             hhhhhhhhHHHHHHHH---Hhc--CchhhHHHHHHHHHHHHHHHHHHHHHH----HHccce-------eehhhhHHHHHH
Confidence            2222222111111111   111  011122333444555666667766554    454333       447888888888


Q ss_pred             HHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcch-------hhHHHHHHHHHHHHHHH
Q 008953          434 SMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK-------GMQAFLTAMTYCSYSFG  506 (547)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~-------~~rg~~~g~~~~~~~~G  506 (547)
                      +.++..+..            ..+.+++.+..++.|++.+..++..++...|..+.       +..|...|++++...+|
T Consensus       303 ~~~~~~~~~------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~  370 (428)
T PF13347_consen  303 GFLLLFFLG------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG  370 (428)
T ss_pred             HHHHHHHHH------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence            888777763            14778888899999999999998888888887774       44799999999999999


Q ss_pred             HHHHHHHHHHHHHhhcC
Q 008953          507 FYLSSLLVSFVNKVTSS  523 (547)
Q Consensus       507 ~~lg~~i~~~l~~~~~~  523 (547)
                      ..+++.+.+.+....+-
T Consensus       371 ~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  371 QGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHHHHHHHHHHHHhCc
Confidence            99999999988887654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.66  E-value=5.6e-14  Score=153.16  Aligned_cols=140  Identities=17%  Similarity=0.015  Sum_probs=124.2

Q ss_pred             hhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccc
Q 008953           66 NEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCE  145 (547)
Q Consensus        66 ~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  145 (547)
                      +..+.+.....+..+++.++..+++++.|.++||+ |||++++++.++.+++.++.+++                     
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a---------------------  168 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA---------------------  168 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            55677888889999999999999999999999995 99999999999999999999998                     


Q ss_pred             ccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhh
Q 008953          146 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDV  225 (547)
Q Consensus       146 ~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~  225 (547)
                          .++..+++.|++.|++.++...+...++.|.+++++      |+.+.++ ......++.+++.+++++..  +||+
T Consensus       169 ----~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~  235 (521)
T KOG0255|consen  169 ----PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRW  235 (521)
T ss_pred             ----CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHH
Confidence                457789999999999999999999999999999998      8888888 77778888889999899887  7999


Q ss_pred             HHHHHHHHHHHHHHH
Q 008953          226 GFGVSAAAMALGLFG  240 (547)
Q Consensus       226 ~f~~~~~~~~~~l~~  240 (547)
                      .+++......+.++.
T Consensus       236 ~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  236 LFWIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999876665555444

>TIGR00788 fbt folate/biopterin transporter

Probab=99.65  E-value=5.3e-14  Score=150.97  Aligned_cols=384  Identities=12%  Similarity=0.072  Sum_probs=218.5

Q ss_pred             chHH-HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccc-----hHHHHHH
Q 008953           36 MKAA-VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLG-----SFWTMLI  109 (547)
Q Consensus        36 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-----r~~~~~~  109 (547)
                      ++.. ..+....+.+... +.+...++.++.+++|+++++.+...+...+...+-.+ +|.++||+ +     ||+.+++
T Consensus        24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~  100 (468)
T TIGR00788        24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVL  100 (468)
T ss_pred             cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHH
Confidence            3443 3444467777777 77888889999999999999998888888888777555 99999997 7     6777777


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953          110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS  189 (547)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~  189 (547)
                      +.++.. ...+..++..                      .+......+.+++.+++.+.......+++.|..+ ++++. 
T Consensus       101 ~~~l~~-~~~~~~l~~~----------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~-  155 (468)
T TIGR00788       101 SGLLGS-AILYGLLPGK----------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA-  155 (468)
T ss_pred             HHHHHH-HHHHHhcccc----------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc-
Confidence            765542 1222222210                      0122233346777888888888889999999998 43222 


Q ss_pred             cccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHH
Q 008953          190 KKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAM  269 (547)
Q Consensus       190 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (547)
                        ++...+..+...++|..+++.++|++.+..+|+..|++.++..++.++.....+++.....++.++...   .     
T Consensus       156 --~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~---~-----  225 (468)
T TIGR00788       156 --GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLE---M-----  225 (468)
T ss_pred             --CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccch---h-----
Confidence              455666777778899999999999999999999999987766665544333322211000111000000   0     


Q ss_pred             hhhcccCCCCcccccccCCCCCCCCCCccccccch-hHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHH
Q 008953          270 LKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRF-RFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFAC  348 (547)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (547)
                       .+.                       .. ..... ...+.  .+         .-+     ...+ .+.++..+.+.+.
T Consensus       226 -~~~-----------------------~~-~~~~~~~~~~~--~~---------~l~-----~~l~-~~~i~~~l~fifl  263 (468)
T TIGR00788       226 -NMA-----------------------LL-TLGVLANVKVQ--IL---------GLR-----GAIQ-LLEIAKPLIFIFL  263 (468)
T ss_pred             -hhh-----------------------hh-hhhHHHHHHHH--HH---------HHH-----HHHh-cHHHHHHHHHHHH
Confidence             000                       00 00000 00000  00         000     0000 1112211111111


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHH
Q 008953          349 TIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFG  427 (547)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g  427 (547)
                      .  +..........+..+    +..+  |++. ..+.......++.+++..+.+++    .+|       .+.++.+.++
T Consensus       264 ~--~~~~~~~~~~~f~~~----~~~l--G~s~~~~G~~~~~~~v~~i~g~~~~~~~----~~~-------~~~r~~l~~~  324 (468)
T TIGR00788       264 S--YANLPGASGSVFCAT----TQCL--PGGPSFSGMSKVVGNLGSLCGVGGYDRF----LKT-------FPYRLLFGVT  324 (468)
T ss_pred             H--HhhcCCCCceeEEEE----cccC--CCCcchhhhHHHHHHHHHHHHHHHHHHH----Hhh-------CCHHHHHHHH
Confidence            0  111111111111111    1111  1111 11222333334445555454433    223       3566777888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 008953          428 LFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGF  507 (547)
Q Consensus       428 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~  507 (547)
                      .++.+++.+....... +-+.  . ....+.+++....++.+++.++...+...++.+..|++.+|+..|+.+...++|.
T Consensus       325 ~~l~~~~~~~~~~l~~-~~~~--~-~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~  400 (468)
T TIGR00788       325 TLLYTLSSLFDLILVK-RWNL--A-FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGS  400 (468)
T ss_pred             HHHHHHHHhCceeeee-cccc--c-cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHH
Confidence            8888776654321100 0000  0 0001233455567788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 008953          508 YLSSLLVSFVNKVTS  522 (547)
Q Consensus       508 ~lg~~i~~~l~~~~~  522 (547)
                      .+++.+.+.+.+..+
T Consensus       401 ~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       401 SVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999998888644

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.62  E-value=5.7e-13  Score=134.31  Aligned_cols=150  Identities=16%  Similarity=0.135  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953           40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI  119 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~  119 (547)
                      +.+....+...+.. .....+.+++++.++++..|++++-.++..++.++.+..|++.+|+ |+|+.++.++.+..+|..
T Consensus        16 v~~t~lFfl~G~~~-~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          16 VLLTSLFFLWGFIT-CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHh-hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            33333334444444 4556678888999999999999999999999999999999999997 999999999999999998


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953          120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA  199 (547)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  199 (547)
                      +..=+++                      ...+..++.+.++.+.|.+.......+++....+++..      ..-+++.
T Consensus        94 lF~pAa~----------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a------~~rlnl~  145 (422)
T COG0738          94 LFWPAAS----------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA------AFRLNLA  145 (422)
T ss_pred             HHhhhhh----------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH------HHHHHHH
Confidence            8865433                      25577899999999999999999999999999998652      2337777


Q ss_pred             hhHHhHhHHHHHHHHHHhhc
Q 008953          200 YFAFSTGELVALTVLVWVQT  219 (547)
Q Consensus       200 ~~~~~ig~~~~~~i~~~l~~  219 (547)
                      +....+|++++|.+++++..
T Consensus       146 q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         146 QAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHhhhhHHHHHHHHHHHHHH
Confidence            77788999999999998876

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.62  E-value=2.1e-13  Score=140.97  Aligned_cols=366  Identities=12%  Similarity=0.057  Sum_probs=206.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      ++.|......++..++.-...++.+.+++++.|++.+|.|.+.++..+...+.+|+.|.++||+ |.||-++..+....+
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence            5677777777777777777779999999999999999999999999999999999999999996 977765544333222


Q ss_pred             --HHHHH-HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          117 --GFILL-SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       117 --~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                        +-... ...   |.+                 + .|   +.++.++.++..+.......+. .|.+-++..++   .+
T Consensus        86 l~~pff~~v~~---pll-----------------~-~n---~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~sr~---~~  137 (412)
T PF01306_consen   86 LFGPFFIYVFG---PLL-----------------Q-SN---FWLGAIIGGIYLGLVFNAGVPL-SEAYAERVSRR---NG  137 (412)
T ss_dssp             TCHHHHHHTHH---HHH-----------------H-TT----HHHHHHTTTTTTTTTTTHHHH-HHHHHHHHHHH---HS
T ss_pred             HHHHHHHHHHH---HHH-----------------H-HH---HHHHHHHHHHHHHHHHcccchH-HHHHHHHHHHH---hc
Confidence              22222 111   000                 0 11   2333333344434333333232 24443332111   23


Q ss_pred             cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhc
Q 008953          194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRK  273 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (547)
                      -=+|-..+-+.+|.+++..++|++.+ .+-+..|++..+..++.+++.+..++...++.+..+..               
T Consensus       138 feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~---------------  201 (412)
T PF01306_consen  138 FEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL---------------  201 (412)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS---------------
T ss_pred             CCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc---------------
Confidence            33566778889999999999999986 45667788765544444444443332221111110000               


Q ss_pred             ccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHH
Q 008953          274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFN  353 (547)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (547)
                                              ..+.++.+..|..                    +..+++ +++....+.......+
T Consensus       202 ------------------------~~~~~~~~~~~~~--------------------~l~k~~-~fw~~~l~v~g~~~~Y  236 (412)
T PF01306_consen  202 ------------------------GAKKDKVSLKDVL--------------------SLFKMR-NFWFFVLFVIGVAAIY  236 (412)
T ss_dssp             ------------------------SS------HHHHH--------------------HHTTSH-HHHHHHHHHHHHHHHH
T ss_pred             ------------------------ccCCCCCcHHHHH--------------------HHhcch-hHHHHHHHHHHHHHHH
Confidence                                    0000010111111                    011222 3333333333333344


Q ss_pred             -HHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHH
Q 008953          354 -TILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLAT  432 (547)
Q Consensus       354 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~  432 (547)
                       ...+|.+.++..+....+..    - ..-+...++..+.-.+.-.+..++    .+|       +++++.+.++..+++
T Consensus       237 ~vfdqqf~~y~~~~f~~~~~g----~-~~~G~l~s~~v~~E~~~m~~~p~l----i~r-------ig~k~~Lllag~i~~  300 (412)
T PF01306_consen  237 DVFDQQFPIYFASFFQSAGQG----N-QMYGYLWSVQVFLEALMMFFSPWL----INR-------IGAKNLLLLAGVIMA  300 (412)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHH----HHH-------H-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccC----h-hHHhHHHHHHHHHHHHHHHHHHHH----HHh-------cChHhHHHHHHHHHH
Confidence             44444444433211111000    0 001111122222211111122222    334       366777888889999


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHH-HHHHHHHHHHHH
Q 008953          433 FSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMT-YCSYSFGFYLSS  511 (547)
Q Consensus       433 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~-~~~~~~G~~lg~  511 (547)
                      +-....++.              ++++++++.-.++++-..+...+..-|+++.+|++..++...+. ++..++|..+.+
T Consensus       301 iRi~~~~~~--------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s  366 (412)
T PF01306_consen  301 IRIIGSGFA--------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILS  366 (412)
T ss_dssp             HHHHHHHT----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHhhh--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            998888875              47788888999999999999999999999999999999988885 578999999999


Q ss_pred             HHHHHHHHhhc
Q 008953          512 LLVSFVNKVTS  522 (547)
Q Consensus       512 ~i~~~l~~~~~  522 (547)
                      .+.|.+.+..+
T Consensus       367 ~~~G~lyd~~G  377 (412)
T PF01306_consen  367 PLAGYLYDRIG  377 (412)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhHHhhHhhcC
Confidence            99998888643

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.61  E-value=7.8e-13  Score=131.46  Aligned_cols=346  Identities=17%  Similarity=0.174  Sum_probs=225.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      ..+..++++.+--+-..-++ ..+..-+++++|+|.+.++++++...+...+..++..+++.|+ |.++.+..++++..+
T Consensus        12 ~li~gIvlia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~   89 (395)
T COG2807          12 LLLAGIVLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAA   89 (395)
T ss_pred             HHHHHHHHHHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHH
Confidence            33444444444445555444 4455567889999999999999999999999999999999996 999999999999888


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      |.++=...                          +...++.+-.+.|.|.+..+...++++.+.||++.       +..+
T Consensus        90 G~~iR~~~--------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mt  136 (395)
T COG2807          90 GILIRSLG--------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMT  136 (395)
T ss_pred             HHHHHhcc--------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHH
Confidence            87775552                          34557888889999999999999999999999764       7788


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHS-GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI  275 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~-g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (547)
                      ++|..+.++|+++++.+...+.++. |||....+=+...+++++.++....+.+....+.+.                  
T Consensus       137 glYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~------------------  198 (395)
T COG2807         137 GLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKL------------------  198 (395)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccccccccccc------------------
Confidence            9999999999999999999998887 699888776666666666655432111100000000                  


Q ss_pred             CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHH
Q 008953          276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTI  355 (547)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (547)
                                                                 .+...-||        ++..+...+.+-+....+|+.
T Consensus       199 -------------------------------------------~~~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~  227 (395)
T COG2807         199 -------------------------------------------VSVRKVWR--------SPLAWQVTLFMGLQSLLYYIV  227 (395)
T ss_pred             -------------------------------------------cccccccc--------CchhHHHHHHHHhhHHHHHHH
Confidence                                                       00001122        111122233344777888899


Q ss_pred             HhhhhhhhhhhhhhccccCCCcceeCcccccccch---hhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHH
Q 008953          356 LAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPY---IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLAT  432 (547)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~  432 (547)
                      +.+++.++.+++..-+.+         +.+-.+..   +..-+..|..       .+|..+      .+........++.
T Consensus       228 ~~WLP~ili~~G~sa~~a---------G~llsl~~l~~~~~~ll~P~l-------a~R~~n------~r~~~~~~~~~~l  285 (395)
T COG2807         228 IGWLPAILIDRGLSAAEA---------GSLLSLMQLAQLPTALLIPLL-------ARRSKN------QRPLVVLALLLML  285 (395)
T ss_pred             HHHHHHHHHHcCCCHHHh---------hhHHHHHHHHHHHHHHHHHHH-------HHHhcc------cchHHHHHHHHHH
Confidence            999998877663222211         11111111   1222223332       123221      1222333444444


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHHHHH
Q 008953          433 FSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK-GMQAFLTAMTYCSYSFGFYLSS  511 (547)
Q Consensus       433 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~-~~rg~~~g~~~~~~~~G~~lg~  511 (547)
                      ++..-+.+...           ...++|    .+++|+|.+..+|....++....++ +.-+..+|+......+=..+||
T Consensus       286 ~G~~G~~~~P~-----------~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP  350 (395)
T COG2807         286 VGLVGLLLAPG-----------QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGP  350 (395)
T ss_pred             HHHHHHHHhhh-----------hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhh
Confidence            44444433321           122333    4888999999999888876665544 4445566677777777778899


Q ss_pred             HHHHHHHHhhcC
Q 008953          512 LLVSFVNKVTSS  523 (547)
Q Consensus       512 ~i~~~l~~~~~~  523 (547)
                      .+.|++.+.+++
T Consensus       351 ~l~G~lhDa~gs  362 (395)
T COG2807         351 WLFGFLHDATGS  362 (395)
T ss_pred             hhHhHHHHhcCC
Confidence            999999998887

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.60  E-value=4.5e-13  Score=143.94  Aligned_cols=401  Identities=13%  Similarity=0.070  Sum_probs=241.4

Q ss_pred             HHHHHHHHHHHHHHHhhHH---HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           40 VFVLGLQAFEIMAIAAVGN---NLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.+++..+..++..+++..   .+-..+.++++.+..+++++.++......+..|+.+.+.||+ |.|.+++.+.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence            5556666666666665543   344566788999999999999999999999999999999997 999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHH-HHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLA-LYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      |.++.+++++                         .+.+++. -++.|+|.|+.......++...|+++       |+.+
T Consensus       124 g~~lssF~~~-------------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA  171 (509)
T KOG2504|consen  124 GLLLSSFATS-------------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALA  171 (509)
T ss_pred             HHHHHHHHhh-------------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHH
Confidence            9999999854                         4444444 45679999999888888888777754       7888


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI  275 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (547)
                      .++...+..+|..+=|.+..++.+.+|||..+++.+...+-.++.....++....+++...             ++..+ 
T Consensus       172 ~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~-------------~~~~~-  237 (509)
T KOG2504|consen  172 TGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE-------------KDLRN-  237 (509)
T ss_pred             HhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh-------------hhhcc-
Confidence            8888888889998888888999999999999998776665555555554442222211100             00000 


Q ss_pred             CCCCcccccccCCCCC-CCCCCccccccchhHhhhhhhccccCCCCCCCCCccc---cchhHHHHHHHHhHHHHHHHHHH
Q 008953          276 CPSNPQMLHGLNQNNV-PNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLC---TVTQVEQVKVLISVVPIFACTII  351 (547)
Q Consensus       276 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  351 (547)
                          +....+....+. .....+.......+....................+..   ..+..+++..+...+...+..+.
T Consensus       238 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g  313 (509)
T KOG2504|consen  238 ----SAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLG  313 (509)
T ss_pred             ----ccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHH
Confidence                000000000000 0000000000000000000000000000000000000   11222222222222222233333


Q ss_pred             HHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHH
Q 008953          352 FNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA  431 (547)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~  431 (547)
                      +...+...+......  ..+.       ...+....+..+..+++.++.+.+.+    +    ++ ++......++++..
T Consensus       314 ~~~p~~~l~~~~~~~--g~~~-------~~aa~l~Siigi~~i~gRi~~G~laD----~----~~-~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  314 FNVPFVYLPSYAKSL--GLSS-------NDAAFLLSIIGVSDIIGRIILGLLAD----K----PG-IRALVLFLLTLLIA  375 (509)
T ss_pred             HHHHHHHHHHHHhhc--CCCh-------hhhHHHHHHHHHhhhhhhhhhhhhcC----c----cc-cchHHHHHHHHHHH
Confidence            333333333222111  1111       11122233334444444444444432    2    11 23456677788888


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 008953          432 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS  511 (547)
Q Consensus       432 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~  511 (547)
                      +++.++....              .+++.++..-+++|++.+...........+..+.+.-..+.|+..+.++++..+|+
T Consensus       376 gl~~~~~p~~--------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gp  441 (509)
T KOG2504|consen  376 GLARLFLPFA--------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGP  441 (509)
T ss_pred             HHHHHHHHHh--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCc
Confidence            8887666664              46677788888999999988887778899999999999999999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 008953          512 LLVSFVNKVTSS  523 (547)
Q Consensus       512 ~i~~~l~~~~~~  523 (547)
                      .+.+++.+.++.
T Consensus       442 Piag~~~d~tg~  453 (509)
T KOG2504|consen  442 PIAGLLYDITGN  453 (509)
T ss_pred             ccceeeeeccCC
Confidence            999988776653

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.60  E-value=7.9e-19  Score=187.48  Aligned_cols=136  Identities=17%  Similarity=0.153  Sum_probs=113.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhH
Q 008953           74 NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKAS  153 (547)
Q Consensus        74 ~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (547)
                      +.++..+...++..++.+++|+++||+ |||+.++++.++..++.++..++.+.                      .+..
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~----------------------~~~~  103 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY----------------------NNFW  103 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc----------------------cccc
Confidence            467889999999999999999999997 99999999999999999999987410                      1466


Q ss_pred             HHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc---cchhhHHHHH
Q 008953          154 IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH---SGMDVGFGVS  230 (547)
Q Consensus       154 ~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~---~g~~~~f~~~  230 (547)
                      .++++|++.|++.|+..+..+.++.|..|++.      |+...++......+|..++..+.-.+...   .+||..+.+.
T Consensus       104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~  177 (451)
T PF00083_consen  104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG  177 (451)
T ss_pred             cccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccc
Confidence            78999999999999999999999999999888      88888888888888888887765433332   3499888877


Q ss_pred             HHHHHHHH
Q 008953          231 AAAMALGL  238 (547)
Q Consensus       231 ~~~~~~~l  238 (547)
                      .+..++.+
T Consensus       178 ~~~~l~~~  185 (451)
T PF00083_consen  178 AIPSLLVL  185 (451)
T ss_pred             cccccccc
Confidence            66554433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=1.2e-14  Score=145.45  Aligned_cols=149  Identities=21%  Similarity=0.116  Sum_probs=132.4

Q ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccc
Q 008953           67 EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEE  146 (547)
Q Consensus        67 ~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (547)
                      +++-++.+.|++...+.+...+..++.|.+.||+ |+|-.+++|+++....+++.++..                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            4567788999999999999999999999999996 999999999999999999999974                     


Q ss_pred             cccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhH
Q 008953          147 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVG  226 (547)
Q Consensus       147 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~  226 (547)
                          .+..++++|.++|+|.++......++++|.||++..     |++.+|+.-....+|-.+||.++|.+.+..|.+.+
T Consensus       158 ----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP  228 (464)
T KOG3764|consen  158 ----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP  228 (464)
T ss_pred             ----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence                455699999999999999999999999999998751     79999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCc
Q 008953          227 FGVSAAAMALGLFGVVSGTL  246 (547)
Q Consensus       227 f~~~~~~~~~~l~~~~~~~~  246 (547)
                      |++.++.+++-..+-++..+
T Consensus       229 FlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  229 FLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             HHHHHHHHHHHHHHHHheeC
Confidence            99988877776555444333

>PRK11462 putative transporter; Provisional

Probab=99.59  E-value=2.3e-12  Score=138.10  Aligned_cols=175  Identities=12%  Similarity=0.011  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHHHHH-HHHHHHH
Q 008953           40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFWTML-IFGFVEL  115 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~-~~~~~~~  115 (547)
                      +.=-+..+..+..+..+..++..|.++.+|+++..+|.+..+.-+.-++.-|+.|+++||.   +||||..+ ++.+...
T Consensus        12 ~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~   91 (460)
T PRK11462         12 IGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFG   91 (460)
T ss_pred             HhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHH
Confidence            3444566677777778888999999999999999999999999999999999999999973   48876555 5666777


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.+++....+.                   ........+++...+..++..+......++.+|+.++.+  +   |.+.
T Consensus        92 i~~~llf~~p~~-------------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~l  147 (460)
T PRK11462         92 IVCVLAYSTPDL-------------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RISL  147 (460)
T ss_pred             HHHHHHHhCCCC-------------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHHH
Confidence            776666543110                   011223345555555677777777788889999887532  2   8889


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhccc-------chhhHHHHHHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHS-------GMDVGFGVSAAAMALGL  238 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~-------g~~~~f~~~~~~~~~~l  238 (547)
                      .++.....++|..+++.+...+....       ||+....+.+++.+++.
T Consensus       148 ~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        148 QSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            99988888888888777755443322       45655544444443333

>PTZ00207 hypothetical protein; Provisional

Probab=99.57  E-value=1e-11  Score=134.91  Aligned_cols=178  Identities=12%  Similarity=0.028  Sum_probs=127.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      ++|..++..+++..+... .|+.. .....+++++|++..+.+++.+.... ..++.+++|+++||+ |+|+++.++.++
T Consensus        25 ~Rw~~lva~~~~~~~~g~-~y~fs-v~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ll  100 (591)
T PTZ00207         25 RRFALLVLGAFCSICTSF-MYAFN-LISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMTV  100 (591)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            334455544554444433 34443 44456788999999999998877543 345677899999997 999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      ..++.++++++.+- .                  -..+.+.+++.|++.|+|.+...+.....+.++|| ++      |+
T Consensus       101 ~~iG~ll~ala~~~-~------------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG  154 (591)
T PTZ00207        101 FCLGTLLFALTFQE-V------------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RG  154 (591)
T ss_pred             HHHHHHHHHHHhcc-c------------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hH
Confidence            99999999986320 0                  01357788999999999999888888888899997 44      89


Q ss_pred             cchhhhhhHHhHhHHH-HHHHHHHhhcccchhhHHHHHHHHHHH-HHHHHHH
Q 008953          194 SYFNAAYFAFSTGELV-ALTVLVWVQTHSGMDVGFGVSAAAMAL-GLFGVVS  243 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~-~~~i~~~l~~~~g~~~~f~~~~~~~~~-~l~~~~~  243 (547)
                      ++.++.....++|+++ +++..+++.+  +|+..|++.++..++ +++.+.+
T Consensus       155 ~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll~~~~  204 (591)
T PTZ00207        155 AVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGILAIVF  204 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999975 5555555543  577666665544333 3333333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.56  E-value=1.2e-14  Score=147.01  Aligned_cols=177  Identities=16%  Similarity=0.112  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhccc-chHHHHHH-HHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFL-GSFWTMLI-FGFVE  114 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-Gr~~~~~~-~~~~~  114 (547)
                      |.+|.+++..++.....|++..|.|.|++|+.|+|..++++..+.|-.+...+.+++||+|||++ |||..+-+ ..++.
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            77999999999999999999999999999999999999999999999999999999999999998 77765543 33344


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++.+....+.+                       .+..+..++.++.|+...+..-.+.....|..|++-      -|+
T Consensus       332 ~~~~~~~w~~~~-----------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGt  382 (448)
T COG2271         332 TASLVLYWLAPN-----------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGT  382 (448)
T ss_pred             HHHHHHHHcCCC-----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccc
Confidence            444444444322                       345566666677777666655555666788888776      678


Q ss_pred             chhhhhhHHhH-hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFST-GELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       195 ~~~~~~~~~~i-g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~  242 (547)
                      +.|.......+ |+..+....|++.+.+||...|.+..+..+++.+++.
T Consensus       383 A~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         383 ATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             hhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence            88887777777 9999999999999999999999876665555544433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.55  E-value=1.1e-12  Score=129.82  Aligned_cols=157  Identities=11%  Similarity=-0.028  Sum_probs=119.2

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 008953           46 QAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQA  125 (547)
Q Consensus        46 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~  125 (547)
                      ........-.....+.+-+....|.+..+..+++.....+..+++-.+|.++|++ |||+.+....+...+...+-..+ 
T Consensus        86 gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s-  163 (528)
T KOG0253|consen   86 GWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS-  163 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC-
Confidence            3344444444445555666677888889999999999999999999999999996 99998888777766655555554 


Q ss_pred             ccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhH
Q 008953          126 HLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFST  205 (547)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  205 (547)
                                              +|+..+++.|.+.++|.|+ .|...++..|..|..+      |....-.. .-..+
T Consensus       164 ------------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~wai  211 (528)
T KOG0253|consen  164 ------------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAI  211 (528)
T ss_pred             ------------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHH
Confidence                                    5667799999999999999 8898999999999877      66655444 55677


Q ss_pred             hHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 008953          206 GELVALTVLVWVQTHSGMDVGFGVSAAAMAL  236 (547)
Q Consensus       206 g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~  236 (547)
                      |.++...+.=.+..+.||||-.+.......+
T Consensus       212 g~v~ea~law~vm~~~gwr~~l~~~~~pl~~  242 (528)
T KOG0253|consen  212 GQVFEALLAWGVMSNFGWRYLLFTSSTPLMF  242 (528)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH
Confidence            8888877765566778999877665543333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.55  E-value=1e-13  Score=141.06  Aligned_cols=144  Identities=17%  Similarity=0.155  Sum_probs=104.9

Q ss_pred             CChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccc
Q 008953           70 FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKG  149 (547)
Q Consensus        70 ~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (547)
                      +++...+.+..+..++..+++++.||++||+ |||+++...+++..++++.++++...+                  ...
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~~------------------~~~  141 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGTT------------------SPL  141 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCCC------------------CCc
Confidence            5666788899999999999999999999996 999999999999999998776653211                  112


Q ss_pred             chhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhh----HHhHhHHHHHHHHHHhhc------
Q 008953          150 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF----AFSTGELVALTVLVWVQT------  219 (547)
Q Consensus       150 ~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~ig~~~~~~i~~~l~~------  219 (547)
                      ..+..++..|+++|+|.|+-+|...++..|..-++.      |+...+....    +.-.|++++-++.+.+..      
T Consensus       142 ~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~  215 (538)
T KOG0252|consen  142 GVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPS  215 (538)
T ss_pred             chhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCC
Confidence            456778999999999999999999998888777665      6666665444    344455555444443321      


Q ss_pred             ---c--cchhhHHHHHHHHHHHHH
Q 008953          220 ---H--SGMDVGFGVSAAAMALGL  238 (547)
Q Consensus       220 ---~--~g~~~~f~~~~~~~~~~l  238 (547)
                         +  .-||..|.+.++..++.+
T Consensus       216 ~~~~ld~vWRl~~glg~vpa~~~l  239 (538)
T KOG0252|consen  216 TYPHLDGVWRIIFGLGAVPALLVL  239 (538)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHH
Confidence               1  128887777655544333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.50  E-value=5e-13  Score=144.57  Aligned_cols=180  Identities=15%  Similarity=0.155  Sum_probs=129.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      +++.........++..+.+|++..++|.|+++++|++..+..++.....++..++.+++|+++||+ |||+.+.++.+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            344444444455667788999999999999988999998888888888888999999999999997 9999988877654


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++...+.....                      ..+...+++++++.+++.+...+...++..|.+|++.      |++
T Consensus       327 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~  378 (490)
T PRK10642        327 FVLAIPAFILIN----------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYS  378 (490)
T ss_pred             HHHHHHHHHHHh----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chH
Confidence            443333222111                      0234456677777777766666677788889999988      999


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +++..+....+++.++|.+.+++.+..+ |+.++++..+..+++++..++
T Consensus       379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            9998666566777889999999887654 666665544444444444443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.50  E-value=7e-12  Score=133.67  Aligned_cols=148  Identities=13%  Similarity=0.024  Sum_probs=123.7

Q ss_pred             hhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 008953           64 VINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSEN  143 (547)
Q Consensus        64 l~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (547)
                      +.+++|....+.+.+.+++.++++++.+++|.+.||+ .-.+.+....+...+..++....                   
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~-------------------  131 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV-------------------  131 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            4477889999999999999999999999999999997 97777776666666555555444                   


Q ss_pred             ccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh------
Q 008953          144 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV------  217 (547)
Q Consensus       144 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l------  217 (547)
                            .+.+.+++.|++.|+..+...|....+++.++.+++      |+..+++++...++|.++|..+...+      
T Consensus       132 ------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~  199 (495)
T KOG2533|consen  132 ------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGS  199 (495)
T ss_pred             ------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC
Confidence                  346679999999999999999999999999999988      99999999999999999999998775      


Q ss_pred             hcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          218 QTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       218 ~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ....||||.|++.+++.+..-+..++
T Consensus       200 ~~~~gW~~~FiI~G~i~~~~gi~~f~  225 (495)
T KOG2533|consen  200 GGLAGWRWLFIIEGVITLVLGIVVFF  225 (495)
T ss_pred             CCcCCceeehhHHHHHHHHHHheEEE
Confidence            34568999999988766655444444

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.50  E-value=3.4e-11  Score=125.90  Aligned_cols=368  Identities=12%  Similarity=0.035  Sum_probs=229.0

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHH-HHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFW-TMLIFG  111 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~-~~~~~~  111 (547)
                      .|.-+.--...+..+..+..+..++..|.++..|+++..+|.+..+.-+.-++.-|+.|.+.||.   +||+| -++++.
T Consensus        11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~   90 (467)
T COG2211          11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA   90 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence            34445556677788888888999999999999999999999999999999999999999999984   37655 555667


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953          112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK  191 (547)
Q Consensus       112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~  191 (547)
                      +.+++.+.++..+.+..                   .+.+....++...+.+++.....-...++.+++.++.  +|   
T Consensus        91 ip~~i~~~l~F~~p~~~-------------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~--~E---  146 (467)
T COG2211          91 IPFAIVAVLLFITPDFS-------------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDP--QE---  146 (467)
T ss_pred             HHHHHHHHHHHcCCCcc-------------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCH--HH---
Confidence            88888888887764311                   1234455667777888998888888889999988753  23   


Q ss_pred             cccchhhhhhHHhHhHHHHHHHHHHhhcc-------cchhhHHHHHHHHHHHHHHHHHHcCceeec-cCCCCC-CchhHH
Q 008953          192 LSSYFNAAYFAFSTGELVALTVLVWVQTH-------SGMDVGFGVSAAAMALGLFGVVSGTLYYRN-KRPQGS-IFTPIA  262 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~-------~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~~~~~~  262 (547)
                      |.+..++-....++|..+...+.+.+...       .||+..-.+.++...+.++..+...++... ..+..+ ...   
T Consensus       147 R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~---  223 (467)
T COG2211         147 RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKL---  223 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccc---
Confidence            88899998888888877766665555432       345544444444444444333332222111 100000 000   


Q ss_pred             HHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhH
Q 008953          263 QVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISV  342 (547)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (547)
                                                                .+.+....                   ..+++.  +  
T Consensus       224 ------------------------------------------~~~~~~~~-------------------~~~Nrp--~--  238 (467)
T COG2211         224 ------------------------------------------KLKDSFLL-------------------IFKNRP--L--  238 (467)
T ss_pred             ------------------------------------------cHHHHHHH-------------------HHccch--H--
Confidence                                                      00000000                   001111  1  


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhH
Q 008953          343 VPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQ  422 (547)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~  422 (547)
                      ..+....++++...+...+...+..   +..++ .-...+...........++..+++.++    .+|+       .+++
T Consensus       239 ~~~l~~~l~~~~~~~i~~s~~~yy~---~y~lg-~~~l~~~~~~~~~~~~~l~~~~~~p~L----~~~~-------gkk~  303 (467)
T COG2211         239 LLLLLMNLLLFIAFNIRGSIMVYYV---TYVLG-DPELFAYLLLLASGAGLLIGLILWPRL----VKKF-------GKKK  303 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeE---EEEcC-ChHHHHHHHHHHHHHHHHHHHHhHHHH----HHHh-------chHH
Confidence            1122234444444444444332211   11111 001111111122222223323343333    3443       3446


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc-------hhhHHHH
Q 008953          423 RIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFL  495 (547)
Q Consensus       423 ~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~rg~~  495 (547)
                      .+.+|.++..++.+.+-+..            ..+..++++..++.++|.+...+..++.+.|...       .+..|..
T Consensus       304 ~~~~~~~~~~i~~~~~~f~~------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~  371 (467)
T COG2211         304 LFLIGLLLLAVGYLLLYFTP------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIV  371 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhc------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhH
Confidence            68888899988888887763            2356666777789999999999888888777554       4456888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008953          496 TAMTYCSYSFGFYLSSLLVSFVNKVTS  522 (547)
Q Consensus       496 ~g~~~~~~~~G~~lg~~i~~~l~~~~~  522 (547)
                      -|.+++.+-+|..++..+.++.....+
T Consensus       372 ~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         372 YSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999888654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.49  E-value=4.1e-13  Score=144.30  Aligned_cols=177  Identities=15%  Similarity=0.039  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.+|.+.+..++....+++...|+|.|+++++|++..++++....+.++..++.+++|+++||+ |||+.+........+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            5688888888888888888899999999999999999999999999999999999999999997 999887665444443


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +..++.....                       .+.....+.+++.|+..............|.+|++.      |+++.
T Consensus       337 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~  387 (467)
T PRK09556        337 IFTLGVYQHA-----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVAN  387 (467)
T ss_pred             HHHHHHHHhc-----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHH
Confidence            3322222111                       223344455666665433322223356679999887      99999


Q ss_pred             hhhhhHHhH-hHHHHHHHHHHhhc------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008953          197 NAAYFAFST-GELVALTVLVWVQT------------HSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       197 ~~~~~~~~i-g~~~~~~i~~~l~~------------~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ++.+...++ |.+++|.+.|++.+            ..||+..|++..+..+++++..+.
T Consensus       388 gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        388 GIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            999998886 77999999999998            578999998877766666555443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.48  E-value=1.7e-12  Score=136.28  Aligned_cols=176  Identities=14%  Similarity=0.102  Sum_probs=128.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      ++|..+..+.+.+.....++....+.|.|+++++|+++.+++.+.+...+...++.+++|+++||+ |||+.+..+.+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~  292 (393)
T PRK15011        214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG  292 (393)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence            334444444444444455555667899999999999999999988887788888999999999996 9999887765554


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .+....+...                         .+...+++.+++.+++.+...+...+...|.+|+ +      |++
T Consensus       293 ~~~~~~~~~~-------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~  340 (393)
T PRK15011        293 VCFYAGMLMA-------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGS  340 (393)
T ss_pred             HHHHHHHHHH-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cch
Confidence            4443333322                         2334455566666666665555556667788774 3      688


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +.++++...++|..++|.++|++.++.||+..|++..+..+++++..+.
T Consensus       341 ~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        341 ATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            8999888889999999999999999899999998877777666665554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.46  E-value=8.4e-13  Score=137.29  Aligned_cols=172  Identities=18%  Similarity=0.071  Sum_probs=131.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      ++++.++......++.....+....++|.|+++++|.+..+.+.+.....++..++.+++|+++||+ |||+.+..+..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~  294 (394)
T TIGR00883       216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVL  294 (394)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Confidence            3344567777777788888888889999999989999999999999999999999999999999997 999987765544


Q ss_pred             HHHHH-HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          114 ELSGF-ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       114 ~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      ..+.. .+......                      ..+...+++..++.+++.+...+...+.+.|.+|+++      |
T Consensus       295 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~  346 (394)
T TIGR00883       295 AALLAVPLLMALLD----------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------R  346 (394)
T ss_pred             HHHHHHHHHHHHhc----------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------e
Confidence            43332 22211110                      0233445566677788888888888999999999887      8


Q ss_pred             ccchhhh-hhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHH
Q 008953          193 SSYFNAA-YFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAM  234 (547)
Q Consensus       193 ~~~~~~~-~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~  234 (547)
                      ++++++. .....+|..++|.++|++.++.| |++.++..++..
T Consensus       347 ~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       347 YTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             eeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            8888874 45567899999999999999888 887776654443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=99.44  E-value=2.5e-12  Score=137.07  Aligned_cols=183  Identities=14%  Similarity=0.015  Sum_probs=129.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      ++++....+....++..+.+|....+.+.|+++++|++......+.........++.++.|+++||+ ||||++..+.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~  325 (438)
T PRK09952        247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI  325 (438)
T ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence            3444444444456677788898999999999999999887666555566667788889999999996 999998887665


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      ..++.+.+.....                     .......+++..++.+++.+...+..+++.+|.+|.+.      |+
T Consensus       326 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~  378 (438)
T PRK09952        326 GTLSAFPFFMALE---------------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RY  378 (438)
T ss_pred             HHHHHHHHHHHHH---------------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hH
Confidence            5444433322210                     00122333444555677777777788899999999887      88


Q ss_pred             cchhhhhhH-HhHhHHHHHHHHHHhhccc--chhhHHHHHHHHHHHHHHHHHHc
Q 008953          194 SYFNAAYFA-FSTGELVALTVLVWVQTHS--GMDVGFGVSAAAMALGLFGVVSG  244 (547)
Q Consensus       194 ~~~~~~~~~-~~ig~~~~~~i~~~l~~~~--g~~~~f~~~~~~~~~~l~~~~~~  244 (547)
                      ++.++.+.. ..+|+.++|.+.+++.+..  +|+.++.+.++..+++++..+..
T Consensus       379 tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        379 SGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            888885544 4589999999999997744  37877777666666666665543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.43  E-value=2.3e-12  Score=133.18  Aligned_cols=170  Identities=15%  Similarity=0.013  Sum_probs=133.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.++.+....++..+.......+.+.|. +++|.++.+.+.+.+.+.++..++.++.|+++||+ |||+.+.++.++..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~  282 (377)
T TIGR00890       205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV  282 (377)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence            3445555555555555555556677775 56899999999999999999999999999999996 999999988888888


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +.+++....+                       .....++...++.+++.+...+..+++..|.+|+++      |++.+
T Consensus       283 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~  333 (377)
T TIGR00890       283 GMAAMLFIPM-----------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANY  333 (377)
T ss_pred             HHHHHHHccc-----------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHh
Confidence            7776665421                       112234445566777777777777888999999887      89999


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG  237 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~  237 (547)
                      ++++...++|..++|.+.|++.++.||++.|.+.++..+++
T Consensus       334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            99999999999999999999999999999998876665554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.40  E-value=1.5e-09  Score=116.10  Aligned_cols=67  Identities=16%  Similarity=0.104  Sum_probs=60.9

Q ss_pred             chHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008953          457 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSS  523 (547)
Q Consensus       457 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~~  523 (547)
                      +.+.+.+..++.|+..+..++..-++..|..|+++++...|++.+.......+||++.+.+.+.|++
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~  445 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS  445 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4455666678999999999999999999999999999999999999999999999999999998864

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.39  E-value=8.6e-12  Score=131.00  Aligned_cols=172  Identities=17%  Similarity=0.080  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953           40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI  119 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~  119 (547)
                      +.......+..+.++.+..+++.|+.+ .|.+  +.+.....+.++..++.++.|++.||+ ||||.+..+..+..++.+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~  294 (399)
T PRK05122        219 WPYGMGLALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLL  294 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence            333333344455666677888888764 5653  456666777888889999999999996 999999888877777776


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953          120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA  199 (547)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  199 (547)
                      ++...                         .+...+++.+++.|++.+...+.......|.+|+++      |++.++++
T Consensus       295 ~~~~~-------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~  343 (399)
T PRK05122        295 LLWLA-------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAY  343 (399)
T ss_pred             HHHHh-------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHH
Confidence            66654                         233446667788899888888877777888888777      89999999


Q ss_pred             hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCc
Q 008953          200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTL  246 (547)
Q Consensus       200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~  246 (547)
                      +...++|..+++.+.|++.++.||++.|++.++..+++++..+..++
T Consensus       344 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        344 SVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999899999999887777776665555433

>PRK03699 putative transporter; Provisional

Probab=99.38  E-value=9.8e-12  Score=130.57  Aligned_cols=169  Identities=15%  Similarity=0.166  Sum_probs=129.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.++.+.+..++.....+.+..|+|.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |||+.+.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            4556666666777777888889999999999999999999999999999999999999999996 999988877666555


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      ...+.....                         +...+.+..++.|++.+...+...+...+..|++       +++..
T Consensus       284 ~~~~~~~~~-------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~  331 (394)
T PRK03699        284 LMYLFVNTD-------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLV  331 (394)
T ss_pred             HHHHHHHcC-------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHH
Confidence            544443321                         2223444556677777777777777777766543       34556


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGL  238 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l  238 (547)
                      +......++|..++|.+.|++.+..|++..++..++..++++
T Consensus       332 g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (394)
T PRK03699        332 NFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF  373 (394)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence            777778899999999999999999999998887665555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.37  E-value=1.3e-11  Score=128.05  Aligned_cols=177  Identities=16%  Similarity=0.016  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHH-HHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTML-IFGFVEL  115 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~  115 (547)
                      +.++..++..++.....+....+.|.|+.+++|.+..+.+++.....++..++.+++|+++||+ |||+... .......
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            5577777888888888888889999999999999999999999999999999999999999996 9986111 1111111


Q ss_pred             HH---HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          116 SG---FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       116 i~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      ++   ..+......  .                   ............+.+.+.+ ..+...++..|.+|+++      |
T Consensus       294 ~~~~~~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~  345 (399)
T TIGR00893       294 IAGLVLSLLMFATN--Y-------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------A  345 (399)
T ss_pred             HHHHHHHHHHHHhc--c-------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------H
Confidence            11   111111110  0                   0122222222223333333 67888899999999888      9


Q ss_pred             ccchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHH
Q 008953          193 SSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~  242 (547)
                      ++.+++.+...++|..++|.+.|++.+..| |+..|++.++..+++.+..+
T Consensus       346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988 99998887766666555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.37  E-value=1.5e-11  Score=127.52  Aligned_cols=168  Identities=14%  Similarity=0.058  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 008953           43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLS  122 (547)
Q Consensus        43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~  122 (547)
                      ....++..........++|.|+.+++|.++.+.+.+.....+...++.+++|+++||+ |||+.+.++.+...+......
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~  283 (375)
T TIGR00899       205 FVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLA  283 (375)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHH
Confidence            3333333344444556788999899999999999888877777788889999999997 999998887665554444333


Q ss_pred             HhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhH
Q 008953          123 VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA  202 (547)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  202 (547)
                      ..                         ++...+.+.+++.+++.+...+...++..|..|++       +++++++++..
T Consensus       284 ~~-------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  331 (375)
T TIGR00899       284 AD-------------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNT  331 (375)
T ss_pred             HH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHH
Confidence            32                         23444556677778877777777777788887753       56889999999


Q ss_pred             HhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          203 FSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       203 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      .++|..++|.+.|++.+..||+..|++.++..+++.+....
T Consensus       332 ~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       332 GRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999999999877776666655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.36  E-value=9e-10  Score=112.38  Aligned_cols=345  Identities=14%  Similarity=0.097  Sum_probs=199.1

Q ss_pred             hhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccc-----hHHHHH-HHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953           64 VINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLG-----SFWTML-IFGFVELSGFILLSVQAHLPQLKPPKCNM  137 (547)
Q Consensus        64 l~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-----r~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  137 (547)
                      +..|++++..-.+.......+.+ ..++..|..||+. +     ||..++ .+.++...+..+.+++.-+-.        
T Consensus         6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--------   75 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--------   75 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--------
Confidence            34578888877777777777665 4699999999997 7     555555 456666666666666532111        


Q ss_pred             CCCCCcccc-cccchhH--HHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953          138 VTDSENCEE-AKGFKAS--IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL  214 (547)
Q Consensus       138 ~~~~~~~~~-~~~~~~~--~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~  214 (547)
                         + +... ......+  ...++..+.|+|.+.......++++|..||++      |++..++.+.+.-+|.+++..+.
T Consensus        76 ---~-~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~  145 (403)
T PF03209_consen   76 ---E-SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF  145 (403)
T ss_pred             ---c-cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence               0 0000 0111222  34444556788888888888899999999998      99999999999999999999999


Q ss_pred             HHhhcccc-hhhH---HHHHHHHHHHHHHHHHHcCceeeccC-CCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCC
Q 008953          215 VWVQTHSG-MDVG---FGVSAAAMALGLFGVVSGTLYYRNKR-PQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQN  289 (547)
Q Consensus       215 ~~l~~~~g-~~~~---f~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (547)
                      +.+.+.+. -|..   -..+.+..++.++..+-..++.++.. ..+++                                
T Consensus       146 g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~--------------------------------  193 (403)
T PF03209_consen  146 GRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP--------------------------------  193 (403)
T ss_pred             HHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC--------------------------------
Confidence            98877665 2221   12223333334444443322222111 00000                                


Q ss_pred             CCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 008953          290 NVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSA  369 (547)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (547)
                                   +.++.+...               ....+.  +.++++.  .+++..+.+++....+ ..|--+   
T Consensus       194 -------------~~~f~~a~~---------------~~~~~~--~a~~f~~--fl~l~t~a~~~QD~iL-EPygg~---  237 (403)
T PF03209_consen  194 -------------RPPFREAWR---------------QVWASP--QARRFFV--FLFLGTLAFFMQDVIL-EPYGGE---  237 (403)
T ss_pred             -------------CccHHHHHH---------------HHHhCC--ChhHHHH--HHHHHHHHHHhhHHHc-CCchhH---
Confidence                         011111111               000000  0111111  1112222222211111 111111   


Q ss_pred             ccccCCCcceeC-cccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008953          370 MNNKLTKNFHVP-PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDS  448 (547)
Q Consensus       370 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~  448 (547)
                          .. ++... +..++..-..+.+++..+......   +|       ..+++...+|..+.++++........     
T Consensus       238 ----Vf-gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~-----  297 (403)
T PF03209_consen  238 ----VF-GMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP-----  297 (403)
T ss_pred             ----Hc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh-----
Confidence                11 11111 111222233344444444444322   12       23444555666666666665554422     


Q ss_pred             cCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008953          449 ALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTS  522 (547)
Q Consensus       449 ~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~  522 (547)
                            .-+.+.+.+..+++|++.++......+...+..+++..|..+|.+...+.++..++.++.+.+.+...
T Consensus       298 ------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~  365 (403)
T PF03209_consen  298 ------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR  365 (403)
T ss_pred             ------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  23577788899999999999999999999999999999999999999999999999999998888654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.36  E-value=1.1e-11  Score=130.60  Aligned_cols=171  Identities=13%  Similarity=0.023  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      .+.+....++.....+.+..++|.|+.+ .|++..+.+.+...+.++..++.++.|+++||+ |||+.+.++.+...++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  299 (406)
T PRK11551        222 TLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASL  299 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            3344444555556677778889999875 799999999999999999999999999999996 99999888666555555


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA  198 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  198 (547)
                      +++...                         .+...+.+..++.+++.++..+...++..|.+|+++      |++..++
T Consensus       300 ~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~  348 (406)
T PRK11551        300 AALAAA-------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGA  348 (406)
T ss_pred             HHHHhc-------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhH
Confidence            444433                         122334455566777776777788889999999888      9999999


Q ss_pred             hhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHH
Q 008953          199 AYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       199 ~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~  242 (547)
                      .+....+|..++|.+.|++.++.+ |...+++.....+++.+..+
T Consensus       349 ~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        349 AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988754 55555555444444444433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.35  E-value=2.4e-11  Score=124.04  Aligned_cols=174  Identities=18%  Similarity=0.165  Sum_probs=149.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHH-HHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFW-TMLIFGFVEL  115 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~-~~~~~~~~~~  115 (547)
                      |.++...+..++..........+.+.|..+.+|.++.+.+.......++..++.++.|+++||+ |||+ .+..+.++..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~  253 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA  253 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence            4445556666677777778888899999888899999999999999999999999999999996 9999 9999988888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.+.+...                         .+...+.+..++.+++.+...+...+++.|..|+++      |++.
T Consensus       254 i~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  302 (352)
T cd06174         254 LGLLLLALA-------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTA  302 (352)
T ss_pred             HHHHHHHHh-------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHH
Confidence            888877764                         235567778888999999999999999999999877      9999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~  242 (547)
                      ++..+...++|..++|.+.+++.+..+|+..|++.++..+++.+...
T Consensus       303 ~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         303 SGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999999888999999988777666655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.35  E-value=6e-12  Score=134.74  Aligned_cols=178  Identities=15%  Similarity=0.063  Sum_probs=122.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhccc-chHHHHH-HHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFL-GSFWTML-IFGFVE  114 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-Gr~~~~~-~~~~~~  114 (547)
                      +.+|...+..++.....+++..++|.|+++++|++..+++.+...+.++..++.+++|+++||+. |||+... ....+.
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~  332 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  332 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence            55777778777878888888999999999999999999999988888999999999999999951 3343322 222222


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++.+++.....                       .+.....+..++.|.+..........+..|.+|++.      |++
T Consensus       333 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~  383 (452)
T PRK11273        333 TIATIVYWLNPA-----------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGT  383 (452)
T ss_pred             HHHHHHHHHhcc-----------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhh
Confidence            333222222110                       122223333333443322222223345678999887      999


Q ss_pred             chhhhhhHHhHhHHH-HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELV-ALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~-~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ++++.+...++|+.+ +|.+.|++.++.||+..|++.++..+++++....
T Consensus       384 ~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        384 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            999998888888654 7999999999999999998877766666554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.35  E-value=3.8e-11  Score=126.15  Aligned_cols=176  Identities=12%  Similarity=-0.074  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +..|.+.+..++..+.++.+..++|.|+.+ +|++..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            445666666677778888999999999976 899999999999999999999999999999996 999999888777666


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC-CCcccccccccc
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ-SNPKQSKKLSSY  195 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~  195 (547)
                      +..++.....                       ... .+  ..++.+++.+...+.......+.+++ ++      +++.
T Consensus       283 ~~~~~~~~~~-----------------------~~~-~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~  330 (393)
T PRK09705        283 GFCGFIWLPL-----------------------QLP-VL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKL  330 (393)
T ss_pred             HHHHHHHccc-----------------------hHH-HH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHH
Confidence            6554443210                       111 11  12345777777777776677777753 34      7889


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcCc
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSGTL  246 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~~~  246 (547)
                      ++..+...+++..++|.+.|++.+..| |...|++.++..+++++......+
T Consensus       331 ~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        331 VAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999887 788888776666655555444443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.35  E-value=7.8e-12  Score=132.46  Aligned_cols=177  Identities=8%  Similarity=-0.048  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCC--------hhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFS--------LSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF  110 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~--------~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~  110 (547)
                      ++...+..++..........+.+.|+.+ .|.+        ..+.+.+.+...+...++.++.|+++||+ |||+++.++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~  287 (418)
T TIGR00889       210 MAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLS  287 (418)
T ss_pred             eeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHH
Confidence            3444444555444444455677888754 5544        35668888888999999999999999996 999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953          111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK  190 (547)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~  190 (547)
                      .++..++..++.....                     +......+++..++.|++.+...+....++.|.+|+++     
T Consensus       288 ~~~~~v~~~l~~~~~~---------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~-----  341 (418)
T TIGR00889       288 LVAWALRFGFFAYGDP---------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI-----  341 (418)
T ss_pred             HHHHHHHHHHHHHcCc---------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence            8888777666655311                     00123456677888899888888888899999999887     


Q ss_pred             ccccchhhhh-hHHhHhHHHHHHHHHHhhcc------cchhhHHHHHHHHHHHHHHHHHHc
Q 008953          191 KLSSYFNAAY-FAFSTGELVALTVLVWVQTH------SGMDVGFGVSAAAMALGLFGVVSG  244 (547)
Q Consensus       191 ~r~~~~~~~~-~~~~ig~~~~~~i~~~l~~~------~g~~~~f~~~~~~~~~~l~~~~~~  244 (547)
                       |++++++.+ ....+|.++||.++|++.++      .||+..|.+.++..+++.+.++..
T Consensus       342 -~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~  401 (418)
T TIGR00889       342 -RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF  401 (418)
T ss_pred             -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence             999999987 56789999999999999887      469999988766655554444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.34  E-value=2.7e-11  Score=128.97  Aligned_cols=178  Identities=15%  Similarity=0.000  Sum_probs=121.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccch-HHHH-HHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS-FWTM-LIFGFVE  114 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-~~~~-~~~~~~~  114 (547)
                      +.+|.+.+..++....++.+..|+|.|+.+++|++..+++...+.+.++..++.+++|+++||+.++ |+.. ....+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence            4567777767777777788889999999888999999999999999999999999999999996222 2222 2221111


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .+....+...   +.                    .+.....+..+..|++.............|.+|+++      |++
T Consensus       323 ~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  373 (434)
T PRK11663        323 LLSVGSLWLM---PF--------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGA  373 (434)
T ss_pred             HHHHHHHHHc---cc--------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHh
Confidence            1111111111   10                    112222222333333222212223455678888777      999


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +.++.+...++|.+++|.+.|++.++.||+..|++.+++.+++.+..+.
T Consensus       374 ~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        374 ATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998877766665544443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.33  E-value=6.2e-12  Score=133.20  Aligned_cols=163  Identities=9%  Similarity=-0.016  Sum_probs=124.4

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhc---CCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 008953           47 AFEIMAIAAVGNNLITYVINEM---HFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSV  123 (547)
Q Consensus        47 ~~~~~~~~~~~~~l~~yl~~~l---g~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~  123 (547)
                      ++....+.....+.+.|+.+.+   +.+..+.+.+.+...+...++.+++|+++||+ |||+.+.++.++..++.+++.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~  311 (420)
T PRK09528        233 IGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGF  311 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHh
Confidence            3333444444456777776543   56667788988988888999999999999997 9999999988888887777766


Q ss_pred             hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh-hhhH
Q 008953          124 QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA-AYFA  202 (547)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~  202 (547)
                      +                         .+...+.+.+++.+++.+...+....++.|.+|++.      |++.++. +++.
T Consensus       312 ~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~  360 (420)
T PRK09528        312 A-------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFA  360 (420)
T ss_pred             c-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHH
Confidence            4                         234556677888888877766667788888888776      7777665 6677


Q ss_pred             HhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008953          203 FSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGV  241 (547)
Q Consensus       203 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~  241 (547)
                      .++|.+++|.+.|++.+..||+..|.+.++..++..+..
T Consensus       361 ~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~  399 (420)
T PRK09528        361 KQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS  399 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999998666555444333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.31  E-value=5.4e-11  Score=128.65  Aligned_cols=148  Identities=12%  Similarity=0.074  Sum_probs=113.7

Q ss_pred             hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008953           55 AVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPK  134 (547)
Q Consensus        55 ~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  134 (547)
                      .+..++|.|+++++|++..+++++.+...++..++.+++|+++||+ |||+.+.++.++..++.++.....+        
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~--------  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG--------  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence            4567899999889999999999999999999999999999999996 9999988876665555444333211        


Q ss_pred             CCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953          135 CNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL  214 (547)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~  214 (547)
                                     .+...+.+..++.+....+..+..++++.|.+|+++      |++.+++++...++|..++|.+.
T Consensus       364 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~  422 (496)
T PRK03893        364 ---------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILG  422 (496)
T ss_pred             ---------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHH
Confidence                           222233333333333333345667788899999877      99999999999999999999999


Q ss_pred             HHhhcccchhhHHHHHHH
Q 008953          215 VWVQTHSGMDVGFGVSAA  232 (547)
Q Consensus       215 ~~l~~~~g~~~~f~~~~~  232 (547)
                      |++.+++||+..+.+.+.
T Consensus       423 g~l~~~~g~~~~~~~~~~  440 (496)
T PRK03893        423 ALIAQRLDLGTALASLSF  440 (496)
T ss_pred             HHHhccCChHHHHHHHHH
Confidence            999999999887765443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.31  E-value=3.1e-11  Score=134.86  Aligned_cols=134  Identities=11%  Similarity=-0.002  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHH
Q 008953           77 NIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFF  156 (547)
Q Consensus        77 ~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (547)
                      ....+..++..++.+++|+++||+ |||+++.++.++.+++.++++++.+                         ...++
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~s-------------------------~~~ll  652 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGNS-------------------------ESAMI  652 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcc-------------------------HHHHH
Confidence            334555678889999999999996 9999999998888888877776532                         23355


Q ss_pred             HHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 008953          157 LALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMAL  236 (547)
Q Consensus       157 ~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~  236 (547)
                      +.+++.+++.++..+...++++|.+|++.      |++++++.+....+|++++|.+++++... +...+|++.+++.++
T Consensus       653 ~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll  725 (742)
T TIGR01299       653 ALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALAC  725 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence            55667777777777888899999999887      99999999999999999999999988764 455677777666666


Q ss_pred             HHHHHHH
Q 008953          237 GLFGVVS  243 (547)
Q Consensus       237 ~l~~~~~  243 (547)
                      +.++.+.
T Consensus       726 ~~ll~~~  732 (742)
T TIGR01299       726 GGLLALK  732 (742)
T ss_pred             HHHHHHh
Confidence            5554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.31  E-value=2.5e-11  Score=127.06  Aligned_cols=160  Identities=14%  Similarity=0.087  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      +..+.....+.+...+....++|.|+.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+.++.+...+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  318 (405)
T TIGR00891       240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLI  318 (405)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHH
Confidence            34444445555666667778899999999999999999999999999999999999999996 99999888766543322


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA  198 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  198 (547)
                      ...... .                       .+...+.+..++.++..+...+..++++.|.+|+++      |++.+++
T Consensus       319 ~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~  368 (405)
T TIGR00891       319 IPVFAI-G-----------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGF  368 (405)
T ss_pred             HHHHHh-C-----------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhH
Confidence            222111 1                       223344455555666666667778889999999888      9999999


Q ss_pred             hhhHHhHhHHHHHHHHHHhhcccc-hhhHHHH
Q 008953          199 AYFAFSTGELVALTVLVWVQTHSG-MDVGFGV  229 (547)
Q Consensus       199 ~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~  229 (547)
                      .+...++|..++|.+.|++.++.| |+..+..
T Consensus       369 ~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       369 TYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            999999999999999999999988 8766654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.30  E-value=8e-11  Score=123.78  Aligned_cols=166  Identities=14%  Similarity=0.033  Sum_probs=125.7

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhhcCCChh---hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 008953           46 QAFEIMAIAAVGNNLITYVINEMHFSLS---NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLS  122 (547)
Q Consensus        46 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~---~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~  122 (547)
                      .++.......+..+++.|+.+..+....   ..+.+.....++..++.++.|+++||+ |||+.+..+.+...++.+++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~  306 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS  306 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence            3334444445567778888764442221   234555666677788899999999996 999999988777766666555


Q ss_pred             HhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhH
Q 008953          123 VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA  202 (547)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  202 (547)
                      ..                         .+...+++.+++.|++.+...+...+.+.+..|+++      |++.+++++..
T Consensus       307 ~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~  355 (408)
T PRK09874        307 FV-------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSF  355 (408)
T ss_pred             Hh-------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHH
Confidence            43                         234456677888899999888888888888888777      89999999999


Q ss_pred             HhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          203 FSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       203 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      .++|..+||.++|++.++.||++.|++.++..+++.+..+.
T Consensus       356 ~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        356 RDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887777766555444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.30  E-value=6.5e-11  Score=123.85  Aligned_cols=171  Identities=13%  Similarity=-0.018  Sum_probs=142.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++..++..++.....+....+.+.|+++ +|.++.+.+.+.+...++..+..+++|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            567777777777778888888999999965 999999999999998889999999999999997 999999999999998


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      ..++++.+                         ++.+.+++...+.|+..+...+....++.+. |+++      |+++.
T Consensus       283 ~~~~~~~~-------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q  330 (382)
T TIGR00902       283 RWAIIGAI-------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQ  330 (382)
T ss_pred             HHHHHHhH-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHH
Confidence            88887765                         3456678888999999999999988888887 7766      78888


Q ss_pred             hhhhh-HHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953          197 NAAYF-AFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       197 ~~~~~-~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~  242 (547)
                      ++++. ...+|..++|.++|++.++.|+ ..|++.++..+++++...
T Consensus       331 ~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~~  376 (382)
T TIGR00902       331 ALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLIP  376 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence            88764 5689999999999999999986 567766666666654443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK12382 putative transporter; Provisional

Probab=99.29  E-value=4.3e-11  Score=125.46  Aligned_cols=162  Identities=18%  Similarity=0.197  Sum_probs=127.8

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q 008953           47 AFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAH  126 (547)
Q Consensus        47 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~  126 (547)
                      ++.......+..+.+.|+.+ .|++  +.+.....+.++..++.++.|++.||+ |+||.+..+..+..++.++....  
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--  299 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA--  299 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc--
Confidence            33445555666778888865 5654  355666677777888999999999996 99999998888877777666554  


Q ss_pred             cCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHh
Q 008953          127 LPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTG  206 (547)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  206 (547)
                                             .+...+.+..++.|++.+...+...+...|.+|+++      |++.+++++...++|
T Consensus       300 -----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g  350 (392)
T PRK12382        300 -----------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIA  350 (392)
T ss_pred             -----------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHH
Confidence                                   233455667788888888878888888889898877      999999999999999


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          207 ELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       207 ~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ..++|.+.|++.++.||+..|.+.++..+++++..+.
T Consensus       351 ~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        351 YGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999887777766655544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.29  E-value=1.5e-10  Score=121.36  Aligned_cols=172  Identities=16%  Similarity=0.001  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      ++...+..++.....+....++++|+.+++|.+..+++.+...+.++..++.++.|+++||+ |||+.. .+..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            44445555555666666678888999888999999999999999999999999999999996 987654 4444333333


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA  198 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  198 (547)
                      .+.....                        .+...+++..++.|++.+...+...+.+.+..|+ .      |++++++
T Consensus       285 ~~l~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~  333 (390)
T PRK03545        285 LLLLPAA------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A------TDVAMAL  333 (390)
T ss_pred             HHHHHHh------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c------HHHHHHH
Confidence            3322211                        2344556667777888777666677777777663 4      7888999


Q ss_pred             hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ++...++|..+||.++|++.++.|++..|+..++..+++++..+.
T Consensus       334 ~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        334 FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999999888777777666554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.28  E-value=6.2e-11  Score=126.23  Aligned_cols=153  Identities=14%  Similarity=0.120  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH-HH
Q 008953           43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI-LL  121 (547)
Q Consensus        43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~-l~  121 (547)
                      ++..++....++.+..+.|.|+++.+|++..++++....+.++..++.+++|+++||+ |||+.+.++.+...+... ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            4444556677888889999999988999999999988888899999999999999997 999988776544332221 11


Q ss_pred             HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhh
Q 008953          122 SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF  201 (547)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  201 (547)
                      .....                      ........+..++.+++.+...+...++..|.+|++.      |++++++.+.
T Consensus       323 ~~~~~----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~  374 (434)
T PRK15075        323 SWLVA----------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYS  374 (434)
T ss_pred             HHHHc----------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHH
Confidence            11111                      0112222333344455566666666778899999888      8889988655


Q ss_pred             HHh-HhHHHHHHHHHHhhcccchh
Q 008953          202 AFS-TGELVALTVLVWVQTHSGMD  224 (547)
Q Consensus       202 ~~~-ig~~~~~~i~~~l~~~~g~~  224 (547)
                      ..+ +++.++|.+.+++.++.|++
T Consensus       375 ~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        375 LATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHhhhHHHHHHHHHHhcCCc
Confidence            444 45788999999999988854

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.28  E-value=7.4e-11  Score=125.77  Aligned_cols=177  Identities=15%  Similarity=0.041  Sum_probs=119.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.+|...+..++.....+++..++|.|+++..|+++.+++++...+.+...++.+++|+++||+ |+++....+.....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            4567777777777777888999999999998999999999999999999999999999999996 754432333222211


Q ss_pred             ---HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          117 ---GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       117 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                         +.+.+...   +.                    .+........+..|++..+..........|.+|++.      |+
T Consensus       330 ~~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g  380 (438)
T TIGR00712       330 VTIAVIVYWMN---PA--------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG  380 (438)
T ss_pred             HHHHHHHHHhc---CC--------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------ee
Confidence               11111111   00                    112222233333444322222222345678899877      89


Q ss_pred             cchhhhhhHHhHhH-HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          194 SYFNAAYFAFSTGE-LVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       194 ~~~~~~~~~~~ig~-~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ++.++++...++|+ +++|.+.|++.++.||...|++.++..+++++..+.
T Consensus       381 ~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       381 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             eehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            99999988888774 689999999999999999988766655555444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.27  E-value=1.1e-10  Score=124.13  Aligned_cols=177  Identities=14%  Similarity=0.034  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHH-HHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQA-FEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        37 ~~~~~~~~~~~-~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      |..+.+.+..+ +....+|.+..|+|.|+.+++|++..+.+...+...++..++.++.|+++||+ |||+.+.++.++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~  320 (432)
T PRK10406        242 RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAA  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHH
Confidence            33444444433 44778888999999999988999999998888888888888899999999996 99998877655433


Q ss_pred             HHHHHHHH-hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          116 SGFILLSV-QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       116 i~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      +....... ...                      ..+....+....+..++.+...+...++..|.+|++.      |++
T Consensus       321 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t  372 (432)
T PRK10406        321 LFTVPILSALQN----------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RAL  372 (432)
T ss_pred             HHHHHHHHHHHc----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cch
Confidence            33222211 111                      0111111111122222233333456678899999988      999


Q ss_pred             chhhhhhHHhH-hHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFST-GELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       195 ~~~~~~~~~~i-g~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ++++.+...++ ++...|.+.+++.. .| |...+++.++..+++++..+.
T Consensus       373 ~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        373 GVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99998776554 34558888886644 45 555566555555555554444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.27  E-value=1.2e-10  Score=121.82  Aligned_cols=156  Identities=15%  Similarity=0.207  Sum_probs=119.3

Q ss_pred             HHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008953           51 MAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQL  130 (547)
Q Consensus        51 ~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~  130 (547)
                      ..+.....++|.|+++ .|.++.+.+.+.+...++..++.++.|+++||+ |+|+.+..+.....++.+.....      
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~~~------  285 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAMLSQ------  285 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHhhh------
Confidence            3344445678888865 799999999999999999999999999999997 99999888877766655443210      


Q ss_pred             CCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHH
Q 008953          131 KPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVA  210 (547)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~  210 (547)
                                            .......++.+++.+...|...+.+.|..|+++      ++...+.++...++|.++|
T Consensus       286 ----------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~ig  337 (381)
T PRK03633        286 ----------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLG  337 (381)
T ss_pred             ----------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence                                  112344556676666677888888888888765      6666777777889999999


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953          211 LTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       211 ~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~  242 (547)
                      |.++|++.+++||++.|.+.+...++..+..+
T Consensus       338 p~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        338 PSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987766665544443

>TIGR00897 2A0118 polyol permease family

Probab=99.26  E-value=1.8e-10  Score=121.28  Aligned_cols=176  Identities=14%  Similarity=0.038  Sum_probs=128.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHH-HHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTML-IFGFVEL  115 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~  115 (547)
                      |.++...+..++....+++...+.|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            55677777788888888999999999985 5999999999999999999999999999999996 9988764 2333333


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.+.+......                    ...+....++..++.|++.+...+. .+...|..| ++      |+++
T Consensus       300 ~~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~~  351 (402)
T TIGR00897       300 IFTLALYYIPQH--------------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGAA  351 (402)
T ss_pred             HHHHHHHHHHHc--------------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHHH
Confidence            333332221100                    0022344555666677776665443 455566544 45      8999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~  242 (547)
                      +++.+...++|..++|.+.+++.+..||...|++.++..+++.+...
T Consensus       352 ~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       352 MSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998887766666554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.26  E-value=1.1e-10  Score=125.23  Aligned_cols=172  Identities=9%  Similarity=-0.031  Sum_probs=134.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc-cchHHHHHHHHH--H
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF-LGSFWTMLIFGF--V  113 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~-~Gr~~~~~~~~~--~  113 (547)
                      +.++..++..++..+.++....+++.|+.+ +|++..+++++.+...++..++.+++|+++||. +++|+...++..  .
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            456777777777778888888899999865 899999999999999999999999999999983 244544443332  2


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      ..++.+++...                         .+...+++.+++.|++.+...+...+++.|.+|+++      ++
T Consensus       320 ~~l~~ll~~~~-------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g  368 (455)
T TIGR00892       320 NGLTHLLCALA-------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FS  368 (455)
T ss_pred             HHHHHHHHHHh-------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------Hh
Confidence            23333333333                         234556777888999999888888999999999877      89


Q ss_pred             cchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHH
Q 008953          194 SYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~  240 (547)
                      +.+++++...++|..+||.++|++.+..+ |++.|++.++..+++.+.
T Consensus       369 ~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       369 SAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             hHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            99999999999999999999999988774 999999877766655543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.25  E-value=1e-10  Score=123.67  Aligned_cols=159  Identities=13%  Similarity=-0.055  Sum_probs=126.6

Q ss_pred             HHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008953           53 IAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKP  132 (547)
Q Consensus        53 ~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~  132 (547)
                      .+++..++|.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++.+..+.+...++.+++...        
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------  309 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------  309 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence            345667889999888999999999999999999999999999999995 88888888777777666665543        


Q ss_pred             CCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHH
Q 008953          133 PKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALT  212 (547)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~  212 (547)
                                       ++.....+..++.|++.+...+...+++.|.+|++.      |++.+++++...++|..+||.
T Consensus       310 -----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~  366 (417)
T PRK10489        310 -----------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAA  366 (417)
T ss_pred             -----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHH
Confidence                             234445666777788877766777788899999877      899999999999999999999


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          213 VLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       213 i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +.|++.+..|++..++..++..++..+....
T Consensus       367 l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        367 LLGGLGAMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999888887665544443333333

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.24  E-value=2e-11  Score=107.20  Aligned_cols=132  Identities=14%  Similarity=0.142  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHH
Q 008953           80 TNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLAL  159 (547)
Q Consensus        80 ~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (547)
                      +.+.++..++.++.|+++||+ |||+.+..+.....++.+++...                         .+...+.+.+
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~   58 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS-------------------------SNITVLIIAR   58 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh-------------------------ccHHHHHHHH
Confidence            345667788999999999997 99999999888888887777664                         2355677788


Q ss_pred             HHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008953          160 YLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLF  239 (547)
Q Consensus       160 ~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~  239 (547)
                      ++.+++.+...+...+++.|.+|+++      |++..++.+...++|..++|.+.+++.+..+|++.|++.....+++.+
T Consensus        59 ~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (141)
T TIGR00880        59 FLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI  132 (141)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            89999999888899999999999887      899999999999999999999999999988999998887666555554


Q ss_pred             HHHH
Q 008953          240 GVVS  243 (547)
Q Consensus       240 ~~~~  243 (547)
                      ....
T Consensus       133 ~~~~  136 (141)
T TIGR00880       133 LLAF  136 (141)
T ss_pred             HHhh
Confidence            4443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.22  E-value=2.2e-10  Score=122.12  Aligned_cols=167  Identities=14%  Similarity=0.011  Sum_probs=116.6

Q ss_pred             hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008953           55 AVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPK  134 (547)
Q Consensus        55 ~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  134 (547)
                      .+..+.+ +..+++|++..+.+.......++..++.+++|+++||+ |||+.+.++.++..++.+++.+.......    
T Consensus       302 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  375 (481)
T TIGR00879       302 AIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVT----  375 (481)
T ss_pred             ehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccC----
Confidence            3334444 44567899998889999999999999999999999996 99999998887777776666532110000    


Q ss_pred             CCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953          135 CNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL  214 (547)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~  214 (547)
                           .     .+.......+....+..+.......+...++..|.+|+++      |++++++.+...++|.+++|.+.
T Consensus       376 -----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~  439 (481)
T TIGR00879       376 -----G-----SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLF  439 (481)
T ss_pred             -----C-----cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0     0000022222222222222222334666777799999887      89999999999999999999999


Q ss_pred             HHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          215 VWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       215 ~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +++.++.+|++.|++.+++.+++.+....
T Consensus       440 ~~~~~~~~~~~~f~~~~~~~~~~~i~~~~  468 (481)
T TIGR00879       440 PTMLESIGVGGVFIFFGGLNVLGLIFVYF  468 (481)
T ss_pred             HHHHHhcCccceehhHHHHHHHHHHHHhe
Confidence            99999889999998877666665555444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.22  E-value=4.5e-09  Score=107.13  Aligned_cols=88  Identities=15%  Similarity=0.159  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHH
Q 008953          422 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC  501 (547)
Q Consensus       422 ~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~  501 (547)
                      +.+.+++++..+..+...+.+             ... .......+.|...+..+...-+|..+.+|+++.++..|+++.
T Consensus       319 ~vl~~~lvi~~~~~~~~~~~~-------------~~~-~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyal  384 (438)
T COG2270         319 PVLMIGLVILSIAALYLIFLE-------------GEL-DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYAL  384 (438)
T ss_pred             eeehHHHHHHHHHHHHHHHcc-------------ccH-HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhh
Confidence            446777776666555444432             122 233344788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 008953          502 SYSFGFYLSSLLVSFVNKVTSS  523 (547)
Q Consensus       502 ~~~~G~~lg~~i~~~l~~~~~~  523 (547)
                      .....+.+||.+++.+.++|++
T Consensus       385 tgra~S~~gp~lv~v~t~iTg~  406 (438)
T COG2270         385 TGRAASFLGPFLVAVITQITGS  406 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999876

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.21  E-value=2.8e-10  Score=115.72  Aligned_cols=184  Identities=15%  Similarity=0.028  Sum_probs=145.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      .+..|.+++.++...-++-++..++|.|++++++.++.+++.....+.+...+.++++|+|+||+ |.+|++.+......
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            46789999999999888889999999999999999999999999999999999999999999997 99999888888877


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++..+.....+  .           .     .+..+...++...+.+++..|.-+..+..++...+|++       -+..
T Consensus       296 ~~~~~l~~~~~--~-----------~-----~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v  350 (417)
T COG2223         296 LAAALLSLFLT--G-----------F-----GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAV  350 (417)
T ss_pred             HHHHHHHcccc--c-----------c-----ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHH
Confidence            77777666421  1           0     00123344444444555666666667778888888864       4677


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcC
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSGT  245 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~~  245 (547)
                      .++.....++|+..-|...+...+.+| +...|++.....+++++..+...
T Consensus       351 ~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         351 TGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888899999999999999988888 88889887777777766555433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.21  E-value=5.9e-11  Score=122.70  Aligned_cols=162  Identities=14%  Similarity=0.091  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH-H-H
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF-V-E  114 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~-~-~  114 (547)
                      +.++.+.+..++.....+.+..+.|.|+.+.+|++..+.+...+.+.++..++.++.|+++||..+||+....... . .
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            4567777777777778888889999999999999999999999999999999999999999985244443322211 1 1


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++.......   +.                    .+.....+..++.|+......+....+..|.+|++.      |++
T Consensus       296 ~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  346 (379)
T TIGR00881       296 IVSLLVYWLN---PA--------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGT  346 (379)
T ss_pred             HHHHHHHhcC---cc--------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHH
Confidence            1111111110   00                    223334444555665555555556677899999887      999


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchhhHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGF  227 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f  227 (547)
                      +.++++...++|..++|.+.|++.++.||++.|
T Consensus       347 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       347 AAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            999999999999999999999999999998754

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.20  E-value=1e-09  Score=112.34  Aligned_cols=138  Identities=12%  Similarity=0.048  Sum_probs=104.7

Q ss_pred             HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008953           59 NLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMV  138 (547)
Q Consensus        59 ~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  138 (547)
                      .+..|..+.+| +..-+-|.+.+|.+.+....+.+-|+.||+ |-|.+.+++..+..+|..+=.++.. |.+        
T Consensus        66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~-p~v--------  134 (480)
T KOG2563|consen   66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSL-PFV--------  134 (480)
T ss_pred             hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccC-ccc--------
Confidence            34456666677 666678889999999999999999999996 9999999999999999988777643 321        


Q ss_pred             CCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhh
Q 008953          139 TDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ  218 (547)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~  218 (547)
                              ++.......+.+..+.+...-.+....+-+.+-+|++++      |..+..+-.++..+|.+++.++...+.
T Consensus       135 --------~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV  200 (480)
T KOG2563|consen  135 --------PPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILV  200 (480)
T ss_pred             --------cccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceec
Confidence                    112222356666666666666665555566678899988      899998888888888888888877776


Q ss_pred             ccc
Q 008953          219 THS  221 (547)
Q Consensus       219 ~~~  221 (547)
                      .+.
T Consensus       201 ~~~  203 (480)
T KOG2563|consen  201 PSS  203 (480)
T ss_pred             CCC
Confidence            554

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.19  E-value=6.6e-10  Score=120.21  Aligned_cols=179  Identities=17%  Similarity=0.124  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHH-HHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVT-NFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG  117 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~-~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~  117 (547)
                      .|.+.+..++.....+....+.++|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |+||.+.++.++..+.
T Consensus       224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~  302 (491)
T PRK11010        224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            344444445555666666678899988889999999999875 55678899999999999997 9999877766554444


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953          118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN  197 (547)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  197 (547)
                      .+........                     ..+...+.+..++..+..|...+...++..+..+++.      +++.++
T Consensus       303 ~l~~~~l~~~---------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~g  355 (491)
T PRK11010        303 NAGYWLLSIT---------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFA  355 (491)
T ss_pred             HHHHHHHHhc---------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHH
Confidence            3322211100                     0122223334444444444444556777788888776      677788


Q ss_pred             hhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcC
Q 008953          198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGT  245 (547)
Q Consensus       198 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~  245 (547)
                      +.+...++|..+++.+.|++.+..||+..|.+.+++.+++++.....+
T Consensus       356 l~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        356 LLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999998888999999999999999888777777766665544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.18  E-value=6.7e-11  Score=113.31  Aligned_cols=137  Identities=13%  Similarity=0.179  Sum_probs=109.5

Q ss_pred             HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953           58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM  137 (547)
Q Consensus        58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  137 (547)
                      .-+.++...+.+.+.++..++.++|..-..+.+.++||+.||.+|-|..-++-+++..+|-+..+.-.            
T Consensus        64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg------------  131 (459)
T KOG4686|consen   64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG------------  131 (459)
T ss_pred             hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch------------
Confidence            44567777778888888889999999999999999999999999988766666666666766655421            


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh
Q 008953          138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV  217 (547)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l  217 (547)
                                ....++.+..+|+++|+|.--.......+...+|..++      ..-.++++....-+|..+-..+.+++
T Consensus       132 ----------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~l  195 (459)
T KOG4686|consen  132 ----------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFL  195 (459)
T ss_pred             ----------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHH
Confidence                      11456789999999999987777777888899999888      88889998888888888888888888


Q ss_pred             hcccc
Q 008953          218 QTHSG  222 (547)
Q Consensus       218 ~~~~g  222 (547)
                      .+..+
T Consensus       196 y~~~~  200 (459)
T KOG4686|consen  196 YDTMG  200 (459)
T ss_pred             HHHHH
Confidence            77654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.18  E-value=7.9e-10  Score=113.45  Aligned_cols=177  Identities=16%  Similarity=0.092  Sum_probs=142.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.++......++.....|...+++-+++++..|++....+++...|.++..++.+++|+++||  +.|+++.....+..+
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            567788888888889999999999999999999999999999999999999999999999999  888888887777776


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      ....+.+..+                        +....++..++.|+...........-.++..|+ .      ++.+.
T Consensus       289 ~~l~l~~~~~------------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~-~------~~~a~  337 (394)
T COG2814         289 ALLALTFTGA------------------------SPALALALLFLWGFAFSPALQGLQTRLARLAPD-A------ADLAG  337 (394)
T ss_pred             HHHHHHHhcc------------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC-c------hHHHH
Confidence            6666665432                        334455555566776665555555555663333 3      67888


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCc
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTL  246 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~  246 (547)
                      +++....|+|.++|..++|.+.+++|+....++.++..+++++..+...+
T Consensus       338 sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         338 SLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998888888777665433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.18  E-value=6.2e-10  Score=113.03  Aligned_cols=162  Identities=9%  Similarity=0.056  Sum_probs=122.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh--cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINE--MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      +.++...+..++....--++..|.+.|+.+.  +|+++.+++...+.+.++..+++++++++.||+ |+||.+.++.++.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence            4455555555555556667789999999854  799999999999999999999999999999996 9999988887776


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++.++.....                         ... ...+.++.|++.+...|...+...+.+|++.       +.
T Consensus       219 ~~~~~l~~~~~-------------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~  265 (310)
T TIGR01272       219 VLLSIGAALTH-------------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQ  265 (310)
T ss_pred             HHHHHHHHHcC-------------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hh
Confidence            66654444321                         111 2234557889999999999888888888642       22


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAA  233 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~  233 (547)
                      +.++. ....+|+++.|.+.|.+.+..|.+.+|++..++
T Consensus       266 asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       266 GSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             hHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            33443 456789999999999999998988888765433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.15  E-value=3.8e-09  Score=112.03  Aligned_cols=366  Identities=15%  Similarity=0.076  Sum_probs=212.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhh-HHHHHHHH----HHHHHHHHhhhhHHhhcccchHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSN-SANIVTNF----IGTVFLLALLGGYLSDSFLGSFWTMLIFG  111 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~-~~~i~~~~----~~~~~~~~~~~G~laDr~~Gr~~~~~~~~  111 (547)
                      +.+....+...+.....+........+.....+.+..+ .+......    .+...+..++.|.++||+ |||..+.+..
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~   99 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPL   99 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHH
Confidence            33444444444444444444456666666555544433 23333333    467788899999999998 9999999998


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHH--hccccccchhhhcccCCCCCCcccc
Q 008953          112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAI--GSGCVKPNMIAHGADQFDQSNPKQS  189 (547)
Q Consensus       112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gi--g~g~~~~~~~~~~~~~~~~~~~~~~  189 (547)
                      +...+..+.+.+..                          ++ +++   +.++  +.+...+...++++|...+++    
T Consensus       100 ~~~~l~~~~~~~~~--------------------------~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~----  145 (463)
T KOG2816|consen  100 FGTILPALCLLFQG--------------------------YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEE----  145 (463)
T ss_pred             HHHHHhHHHHHHHH--------------------------HH-Hhh---hcccccchhhhhhhhhhheeeccchhH----
Confidence            88888777776642                          11 222   3332  233445666788899888887    


Q ss_pred             cccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCC-CchhHHHHHHHH
Q 008953          190 KKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS-IFTPIAQVFVAA  268 (547)
Q Consensus       190 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  268 (547)
                        |...+++.+.....+..++|..++.+....|....|+++.+..++.++......++..+++.+.. +.          
T Consensus       146 --R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~----------  213 (463)
T KOG2816|consen  146 --RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL----------  213 (463)
T ss_pred             --HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc----------
Confidence              89999999988899999999999999999999999999888777776665554444333222210 00          


Q ss_pred             HhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHH
Q 008953          269 MLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFAC  348 (547)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (547)
                             ....+.               +..+      .+            ...+++..+. ...+++.+...+..++.
T Consensus       214 -------~~~~~~---------------~~~~------~~------------~~~~~~~~~~-~~~~r~~l~l~l~~~~~  252 (463)
T KOG2816|consen  214 -------RELTPG---------------SLDS------SH------------VADAFQSLTK-VGPDRLLLLLLLVAFLS  252 (463)
T ss_pred             -------cccCCC---------------cccc------hh------------hhhhhhhhcc-cCCCccchHHHHHHHHH
Confidence                   000000               0000      00            0000000000 01111111111111111


Q ss_pred             HHHHHHHHhhhh-hhhhhhhhhccccCCCcceeC-cc----cccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhH
Q 008953          349 TIIFNTILAQLQ-TFSVQQGSAMNNKLTKNFHVP-PA----SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQ  422 (547)
Q Consensus       349 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~----~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~  422 (547)
                      ..   -...+.. ..+.    ++...+  +++.. -+    ..+....+..++..|+..       +.++       .++
T Consensus       253 ~~---~~~~~~~~~~~~----yl~~~f--~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~-------~~l~-------~~~  309 (463)
T KOG2816|consen  253 SL---PEAGGASDVLLL----YLKAKF--GWNKKEFSDLLSLVSILGIISQLLLLPLLS-------SILG-------EKR  309 (463)
T ss_pred             HH---HHhcCceeEEEE----EEeeec--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh-------hhh
Confidence            11   1100000 1111    111111  11111 01    111122222333333322       2222       224


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHH
Q 008953          423 RIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCS  502 (547)
Q Consensus       423 ~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~  502 (547)
                      .+..|+..-.+...++++..              +.|+ ...............|...+++...+.++++|+..++....
T Consensus       310 ~i~lGl~~~~~~~~~~af~~--------------~~w~-~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i  374 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFAT--------------ETWM-MFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGI  374 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhc--------------cchh-hhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHH
Confidence            68889999999999999873              3443 33445556666777899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008953          503 YSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN  533 (547)
Q Consensus       503 ~~~G~~lg~~i~~~l~~~~~~~~~~~w~~~~  533 (547)
                      ..+.+.+++.+-+.+...|..     |+++.
T Consensus       375 ~~l~~~~~~~~~~~i~~~t~~-----~~~~~  400 (463)
T KOG2816|consen  375 EGLSGVVSPALYGNIFALTLD-----DLPGF  400 (463)
T ss_pred             HHHhhhhhHHHHHHHHHHHHH-----hcccc
Confidence            999999999999999888765     66554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.15  E-value=1.3e-09  Score=117.51  Aligned_cols=174  Identities=11%  Similarity=0.049  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHH-----HHHH--H
Q 008953           38 AAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFW-----TMLI--F  110 (547)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~-----~~~~--~  110 (547)
                      .+|.+.+..++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+     ....  .
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~  331 (476)
T PLN00028        253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV  331 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence            355555555555556667778899999988999999999999999999999999999999996 8762     2221  1


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953          111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK  190 (547)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~  190 (547)
                      .++..+..++....                         .+.....+..++.+++.+...+...++..+..| +.     
T Consensus       332 ~~l~~i~~~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~-----  380 (476)
T PLN00028        332 QTLGGVFCIWLGRA-------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS-----  380 (476)
T ss_pred             HHHHHHHHHHhccc-------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh-----
Confidence            11111112222111                         122223333444455444444445555555544 33     


Q ss_pred             ccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcC
Q 008953          191 KLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGT  245 (547)
Q Consensus       191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~  245 (547)
                       |+...++.+...++|+.++|.+.+ .....+|+..|++.++..+++.+..+..+
T Consensus       381 -~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        381 -LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             -chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence             788888887777778877776644 22334699999988877777766665544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.14  E-value=1.4e-09  Score=116.46  Aligned_cols=184  Identities=13%  Similarity=0.050  Sum_probs=149.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchH--HHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSF--WTMLIFGFV  113 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~--~~~~~~~~~  113 (547)
                      .|.+..-++..++.+-+...+......|.++++|++..+...+.....+.+.++.++.|++.||+ |.|  +++++++++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL  358 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence            35667777778888888899999999999999999999999999999999999999999999996 999  888887776


Q ss_pred             HHHHHHHHHH--hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953          114 ELSGFILLSV--QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK  191 (547)
Q Consensus       114 ~~i~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~  191 (547)
                      ..+..+.-.+  ..+   .                ....+.+.+++.-++.|+..|..++..-++.++..|+++      
T Consensus       359 ~~~i~~~g~~G~~~~---~----------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------  413 (477)
T PF11700_consen  359 WIIIPLYGLFGFWPS---F----------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------  413 (477)
T ss_pred             HHHHHHHHHHHhhhc---c----------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------
Confidence            6432222222  111   0                001345557777778999999999999999999999987      


Q ss_pred             cccchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcC
Q 008953          192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSGT  245 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~~  245 (547)
                      .+..|+++.+..-..+.+||.+.|.+.+.+| .|+.+....++.+++++++...+
T Consensus       414 e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  414 EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            7889999999999999999999999999887 88888887777777777765543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10504 putative transporter; Provisional

Probab=99.13  E-value=1.5e-09  Score=116.61  Aligned_cols=158  Identities=9%  Similarity=-0.046  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++..+...++....+.....+.|.|++..+|.++.+++++.....++..++.++.|+++||+ |||+++..+.++..+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            4455556666666666655556778888878999999999999888888888889999999997 999999988887777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +..++.....                      ..+...+.+..++.|++.+...+...++..+.+|++.      ++.++
T Consensus       340 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  391 (471)
T PRK10504        340 VSLLFMLVAL----------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGN  391 (471)
T ss_pred             HHHHHHhccc----------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchH
Confidence            6665554311                      0122233344556778888777788888889899877      89999


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccch
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSGM  223 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~  223 (547)
                      ++.++...+|..+|+.++|.+.+..|+
T Consensus       392 ~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        392 SLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999988776665

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1e-09  Score=105.32  Aligned_cols=163  Identities=11%  Similarity=0.049  Sum_probs=128.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH-HHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF-VEL  115 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~-~~~  115 (547)
                      ..+|.+.++.++...+.+-....-+.++++.+|+|+.+++.+.+...+.++..+++.|.++||+ |++-..+.+.. ...
T Consensus       264 ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl  342 (459)
T KOG4686|consen  264 PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTL  342 (459)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHH
Confidence            4466777777777666666677789999999999999999999999999999999999999998 99987776655 455


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++...+.++.-                        +   -+.+..++|+.........++.++-..|+++      .|++
T Consensus       343 ~~H~~l~Ft~l------------------------s---Py~~m~~lGLsysllAcslWP~va~~vpE~q------LGTa  389 (459)
T KOG4686|consen  343 LGHSGLFFTFL------------------------S---PYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTA  389 (459)
T ss_pred             HHhhhHHhhhc------------------------c---HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcch
Confidence            56666666421                        1   2344456677776666667888899999998      9999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccc---hhhHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSG---MDVGFGVSAAA  233 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g---~~~~f~~~~~~  233 (547)
                      ++..+...|+|-++-|++.|.+.++-|   |--.|++....
T Consensus       390 ygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~  430 (459)
T KOG4686|consen  390 YGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL  430 (459)
T ss_pred             HHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence            999999999999999999999988766   44556554443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.13  E-value=1.5e-09  Score=113.45  Aligned_cols=169  Identities=12%  Similarity=-0.021  Sum_probs=127.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++..++..++....+.....+.+.|+. +.|.+..+.+.+.+...++..+..++.|++.||+ |+|+.+..+.+...+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            45666666666666666667788889985 5899999999999988888889999999999997 999999988888777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +.+++...                         ++.+.+++..++.|++.+...+....+..+. ++++      +++..
T Consensus       283 ~~~~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~  330 (382)
T PRK11128        283 RWGLMGST-------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQ  330 (382)
T ss_pred             HHHHHHhh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHH
Confidence            76666554                         3455667778888888887777777776665 4443      56677


Q ss_pred             hhhh-hHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008953          197 NAAY-FAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       197 ~~~~-~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~  240 (547)
                      +.+. ....+|..+||.++|++.+..|+. .|+..++..+++++.
T Consensus       331 ~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~~  374 (382)
T PRK11128        331 ALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHH
Confidence            7765 445778899999999999998874 566555554444433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.12  E-value=8.7e-09  Score=104.64  Aligned_cols=84  Identities=14%  Similarity=-0.028  Sum_probs=68.6

Q ss_pred             chhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc---------
Q 008953          150 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH---------  220 (547)
Q Consensus       150 ~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~---------  220 (547)
                      .++..++++.++.|.|.+...+...+++++..|+++      +.+.+++......+|..++|.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            456778999999999999999999999999999887      77789999999999999999999977632         


Q ss_pred             -------cchhhHHHHHHHHHHHHHH
Q 008953          221 -------SGMDVGFGVSAAAMALGLF  239 (547)
Q Consensus       221 -------~g~~~~f~~~~~~~~~~l~  239 (547)
                             ..|+++|++.++..++..+
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   3688888865544333333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.12  E-value=3.7e-09  Score=111.40  Aligned_cols=173  Identities=11%  Similarity=-0.063  Sum_probs=125.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.++...+..++.....+....+.|.|+.+++|+++.+.++......++..++.++.|+++||+ |+|+.+.++.+...+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~  293 (406)
T PRK15402        215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVA  293 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            3455555555555555556666788888888999999999888878888889999999999997 999999988887777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +..+........                    ..+...+++..++.++|.+...+......... ++++      |++..
T Consensus       294 g~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~  346 (406)
T PRK15402        294 GLLLAALATVIS--------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVS  346 (406)
T ss_pred             HHHHHHHHHHcc--------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHH
Confidence            777666542100                    12344456677778888887766665554333 3344      88999


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG  237 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~  237 (547)
                      +.+++...+|..+|+.+.+++.+..++....+..++..++.
T Consensus       347 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        347 AAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            99999999999999999999988877665545444433333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.12  E-value=1.9e-09  Score=114.27  Aligned_cols=149  Identities=15%  Similarity=0.005  Sum_probs=107.9

Q ss_pred             HHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q 008953           49 EIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLP  128 (547)
Q Consensus        49 ~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~  128 (547)
                      .....+.+..++|.|+.+ .|.++.+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..+..++......  
T Consensus       243 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~--  318 (426)
T PRK12307        243 IFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ--  318 (426)
T ss_pred             HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc--
Confidence            334444567788999876 699999999998999999999999999999996 9999988887766555444433211  


Q ss_pred             CCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHH
Q 008953          129 QLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGEL  208 (547)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  208 (547)
                                           .....+....+..+.+..+..+..+.++.|.+|++.      |++++++.+...++|..
T Consensus       319 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~  371 (426)
T PRK12307        319 ---------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT  371 (426)
T ss_pred             ---------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence                                 111112122222222333334556778899999887      89999999999999999


Q ss_pred             HHHHHHHHhhcccchhhHHH
Q 008953          209 VALTVLVWVQTHSGMDVGFG  228 (547)
Q Consensus       209 ~~~~i~~~l~~~~g~~~~f~  228 (547)
                      ++|.+.|++.++.|+....+
T Consensus       372 ~gp~~~g~l~~~~g~~~~~~  391 (426)
T PRK12307        372 FNSMAATWLGITMGLGAALT  391 (426)
T ss_pred             HHHHHHHHHHHcccHHHHHH
Confidence            99999999999988665433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.12  E-value=1.2e-09  Score=117.34  Aligned_cols=178  Identities=13%  Similarity=-0.036  Sum_probs=121.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHH--------
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTM--------  107 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~--------  107 (547)
                      ++.+|...+..++....++.+..|+|.|+.+.+|++..++++..+...++..++.+++|+++||+ ++|+..        
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            35688888889999999999999999999999999999999999999999999999999999996 654211        


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc
Q 008953          108 LIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK  187 (547)
Q Consensus       108 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~  187 (547)
                      ..+......+..++..... .                     .+....++...+.+.+.++..+.......|..|+ .  
T Consensus       339 ~~~~~~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~--  393 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPYL-S---------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F--  393 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHc-C---------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H--
Confidence            1111111111111111100 0                     1122233333344444444444444444555553 3  


Q ss_pred             cccccccchhhhhhHHhHhHHHHHHHHHHhhccc---chhhHHHHHHHHHHHHHHHHHH
Q 008953          188 QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS---GMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       188 ~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~---g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                          ++...++.+...++|+.++|.+.|++.+..   +|+..|.+.++..+++.+....
T Consensus       394 ----~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       394 ----LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence                788999999999999999999999887643   3888888877776666555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.11  E-value=7.5e-10  Score=116.15  Aligned_cols=194  Identities=12%  Similarity=0.057  Sum_probs=139.8

Q ss_pred             CCCCCCcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccch-
Q 008953           26 RPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVIN-EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS-  103 (547)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-  103 (547)
                      .+.++.-+.+||.+++..+..+.....+.....-.-+|+++ +.+.+.+..|++.++..++..+..+..|+.+.|. |+ 
T Consensus        23 ~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~  101 (488)
T KOG2325|consen   23 LSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSV  101 (488)
T ss_pred             cccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCc
Confidence            34445557789999999999999888887777777888875 4677888899999999999999999999999996 76 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC
Q 008953          104 FWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ  183 (547)
Q Consensus       104 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~  183 (547)
                      |+.++.+.++..+|.++.......|.                    +..+.++++|++.|+|.+.. +..-+++++....
T Consensus       102 k~Pli~s~ii~~~g~llY~~l~~~~~--------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~  160 (488)
T KOG2325|consen  102 KKPLIVSFLIAIIGNLLYLALAYVPN--------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTV  160 (488)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhccc--------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc
Confidence            88888999999999888844333232                    35678999999999987754 4556788887666


Q ss_pred             CCcccccccccchhhhhhHHhHhHHHHHHHHHHh----hccc--------c-hhhHHHHHHHHHHHHHHHHHHcCce
Q 008953          184 SNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV----QTHS--------G-MDVGFGVSAAAMALGLFGVVSGTLY  247 (547)
Q Consensus       184 ~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l----~~~~--------g-~~~~f~~~~~~~~~~l~~~~~~~~~  247 (547)
                      ++      |.++++....+..+|..+||.+...+    ...+        . +..+-|+.+++.++.++.+....++
T Consensus       161 ~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  161 ED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             cc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            66      77778776666666666666664433    2211        1 2344555555555555554444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.11  E-value=9.4e-10  Score=115.54  Aligned_cols=171  Identities=12%  Similarity=-0.014  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc---CCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEM---HFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      |.++..++..++....+.....+.+.|+.+.+   +.+....+.+.+...+...++.++.|++.||+ |||+.+.++.++
T Consensus       215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l  293 (396)
T TIGR00882       215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTI  293 (396)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence            33444444444444455455567888887765   45566678888888888888999999999996 999999998887


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      ..++..+...+                         .+...+++..++.+++..........+..+..+++.      ++
T Consensus       294 ~~l~~~~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a  342 (396)
T TIGR00882       294 MSVRIIGSSFA-------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SA  342 (396)
T ss_pred             HHHHHHHHHhc-------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EE
Confidence            77776665554                         234445666777777765544444445555556544      66


Q ss_pred             cchhh-hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008953          194 SYFNA-AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLF  239 (547)
Q Consensus       194 ~~~~~-~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~  239 (547)
                      +..+. ++....+|..+++.++|++.+..||+.+|.+.++..++..+
T Consensus       343 t~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       343 TIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             EeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            66665 56788999999999999999999999999987666555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.10  E-value=1e-09  Score=116.08  Aligned_cols=165  Identities=10%  Similarity=-0.007  Sum_probs=115.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHH-HHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVIN-EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTM-LIFGFVE  114 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~-~~~~~~~  114 (547)
                      +.+|...+..++....++.+..++|.|+.+ ..|++..+++.......++..++.+++|+++||+ +||+.. ....+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            456777788888888899999999999976 3477888999999999999999999999999996 877753 3333333


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++. .+.....                       ... ....+..+.++|.....+...+...|.+|+++      |++
T Consensus       321 ~~~~-~~~~~~~-----------------------~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~  369 (412)
T TIGR02332       321 AAGW-LLASATD-----------------------HNL-IQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAI  369 (412)
T ss_pred             HHHH-HHHHhcC-----------------------CHH-HHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHH
Confidence            3332 2222110                       111 11112222233333223333344466777776      899


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAA  233 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~  233 (547)
                      ++++.+...++|.+++|.+.|.+.+..| |++.|++.++.
T Consensus       370 a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       370 AIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            9999999999999999999999999875 99988876543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.10  E-value=3.4e-10  Score=116.49  Aligned_cols=155  Identities=15%  Similarity=0.065  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhH-HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVG-NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      +.++..+...++.....+... .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+.....
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            445556666666666666666 6778888777999999999999999999999999999999996 99999888776666


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++..+.....                        .+...+++..++.|++.+...+...+++.|.+|+++      |++.
T Consensus       289 ~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  338 (365)
T TIGR00900       289 LAILVVGLTP------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRV  338 (365)
T ss_pred             HHHHHHHhhc------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence            6665555431                        124556677788899999888888999999999877      9999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccc
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSG  222 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g  222 (547)
                      +++++...++|..++|.+.|++.++.|
T Consensus       339 ~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       339 FGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999988654

>TIGR00895 2A0115 benzoate transport

Probab=99.08  E-value=6.6e-10  Score=115.72  Aligned_cols=148  Identities=16%  Similarity=0.102  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +..+.+.+..++....++.+..++| ++.+++|.+..+.+.+.+...++..++.+++|+++||+ |||+.+....+....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  327 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHH
Confidence            3445555556667777777778888 66677999999999999999999999999999999997 999554443333332


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      ..++....                         .+...+.+..++.|++.+...+...+++.|.+|+++      |++++
T Consensus       328 ~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  376 (398)
T TIGR00895       328 AVLVGSTL-------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGV  376 (398)
T ss_pred             HHHHHHHh-------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHH
Confidence            22222211                         223345566677888888888899999999999887      89999


Q ss_pred             hhhhhHHhHhHHHHHHHHHHh
Q 008953          197 NAAYFAFSTGELVALTVLVWV  217 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l  217 (547)
                      ++.+...++|..++|.+.|++
T Consensus       377 g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       377 GWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHhHHhc
Confidence            999999999999999999876

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.05  E-value=5e-09  Score=109.80  Aligned_cols=174  Identities=16%  Similarity=0.070  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIG-TVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG  117 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~  117 (547)
                      ++..+...++..........+.+.|+.+ +|+++.+.+.+...... ...++.+++|++.||+ |+||.+.++.++..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            4555555566666666666788889875 79999999998887764 5567789999999996 9999998876655333


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC-CCcccccccccch
Q 008953          118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ-SNPKQSKKLSSYF  196 (547)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~  196 (547)
                      ............                   ......++....+.+++.+...+...+...+..++ +.      +++.+
T Consensus       288 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~  342 (390)
T TIGR02718       288 ALLWFAQAAFWL-------------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDV  342 (390)
T ss_pred             HHHHHHHHHccc-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHH
Confidence            222221111000                   01122233333444555666666666776666665 44      78899


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLF  239 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~  239 (547)
                      +..+...++|..++|.++|++.++.|++..|.+.+++.+++++
T Consensus       343 ~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       343 TAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888887665555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.05  E-value=5.8e-09  Score=109.08  Aligned_cols=169  Identities=12%  Similarity=0.060  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      .|...+..++.....+....++++|+.+.+|+++.+.+.+.+...++..++.++.|+++||+ |+|+.+.++..+..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            44444444555555555567778898888999999999999999999999999999999996 99999988887777766


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccC-CCCCCcccccccccchh
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQ-FDQSNPKQSKKLSSYFN  197 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~  197 (547)
                      +++....+                        +.....+..++.++|.+...+.......+. .+++.      ++.+  
T Consensus       280 ~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--  327 (382)
T PRK10091        280 LMLFFFGG------------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--  327 (382)
T ss_pred             HHHHHHHh------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--
Confidence            55543211                        122333444445555444333333333333 33222      3332  


Q ss_pred             hhhhHHhHhHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHH
Q 008953          198 AAYFAFSTGELVALTVLVWVQTH-SGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       198 ~~~~~~~ig~~~~~~i~~~l~~~-~g~~~~f~~~~~~~~~~l~~  240 (547)
                      ..+...++|..+||.++|++.+. .+|++.+.+.++..++++..
T Consensus       328 ~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        328 GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            23556789999999999998885 57999998876655554433

>PRK10133 L-fucose transporter; Provisional

Probab=99.02  E-value=7.4e-09  Score=110.40  Aligned_cols=164  Identities=15%  Similarity=0.144  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHh-hhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYV-INEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG  117 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~  117 (547)
                      ++...+..++.....++...|.+.|+ ++.+|+++.+++.....+.++..++++++|++.||+ |+||++..+.++..++
T Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~  338 (438)
T PRK10133        260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMAL  338 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            34444555666666666778889996 567899999999999999999999999999999996 9999988886666555


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953          118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN  197 (547)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  197 (547)
                      ..+..+..                         +. .......+.|++.+...|...+...+.+|++.       +.+.+
T Consensus       339 ~~~~~~~~-------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~  385 (438)
T PRK10133        339 CLISAFAG-------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS  385 (438)
T ss_pred             HHHHHHcC-------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence            44433321                         11 12345667899999999999999999887642       33444


Q ss_pred             hhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHH
Q 008953          198 AAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALG  237 (547)
Q Consensus       198 ~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~  237 (547)
                      +..+ ..+|..++|.+.|++.+..| -+..|++..++.+..
T Consensus       386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            4433 34678888899999999887 788888765544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.01  E-value=2.7e-09  Score=114.92  Aligned_cols=157  Identities=10%  Similarity=0.072  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++..++..++..+.++....++|.|+++.+|+++.++++......++..++.+++|++.||+ |||+.+.++.++..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            4566667777777888888888999999999999999999999999999999999999999996 999999988888777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +..++....+ +                    ..+...+....++.|+|.+...+.......+..|+++      |+++.
T Consensus       334 ~~~~~~~~~~-~--------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~  386 (485)
T TIGR00711       334 GFYWRAFTFT-P--------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGS  386 (485)
T ss_pred             HHHHHhccCC-C--------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHH
Confidence            7776653211 0                    1233445555677888888877777777778888777      89999


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhccc
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHS  221 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~  221 (547)
                      ++++...++|..+|+.+.+.+.++.
T Consensus       387 ~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       387 SLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10054 putative transporter; Provisional

Probab=99.00  E-value=5.1e-09  Score=110.13  Aligned_cols=174  Identities=14%  Similarity=0.017  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhh--hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVIN--EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      |.++...+..++..+.+.....+.+.|+..  +.+.+....+.+.....+......++.|++.||+ ++|+.+..+.++.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence            445555566666666655555667777653  3455556667777777777677778899999996 9999998888777


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .++..+.....                        .+...+.++.++.++|.+...|...+.+.+..|++.      |++
T Consensus       285 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~  334 (395)
T PRK10054        285 VIGLVGFIFSG------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KAS  334 (395)
T ss_pred             HHHHHHHHHcc------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------cee
Confidence            77776665431                        233445566778888888878888888889888876      778


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~  242 (547)
                      +++... ...+|..+||.++|++.++.|....|++.+....++.++..
T Consensus       335 ~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        335 YFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             hHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            877644 56689999999999999999988888776555555554444

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.00  E-value=4.6e-09  Score=114.05  Aligned_cols=169  Identities=13%  Similarity=0.041  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHH------------HHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953           43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSAN------------IVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF  110 (547)
Q Consensus        43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~------------i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~  110 (547)
                      ....++..+.+|++..+.|.+++ +.|++..+++.            ......++..++.+++++++||+ |||++++++
T Consensus       294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~  371 (502)
T TIGR00887       294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMG  371 (502)
T ss_pred             HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHH
Confidence            33445566788888888888885 57886543221            12223345556788999999996 999999888


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953          111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK  190 (547)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~  190 (547)
                      .++..++..++.+..+. .                    .....+....+...++..+..+....+.+|.+|++.     
T Consensus       372 ~~~~~~~~~~l~~~~~~-~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~-----  425 (502)
T TIGR00887       372 FFILTVLFFVLGFAYNH-L--------------------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY-----  425 (502)
T ss_pred             HHHHHHHHHHHHHHHHh-c--------------------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH-----
Confidence            77777666555543210 0                    000111111111222223344566677899999988     


Q ss_pred             ccccchhhhhhHHhHhHHHHHHHHHHhhcc----------cchhhHHHHHHHHHHHHHHH
Q 008953          191 KLSSYFNAAYFAFSTGELVALTVLVWVQTH----------SGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~----------~g~~~~f~~~~~~~~~~l~~  240 (547)
                       |+++.++.+....+|++++|.+.+++.+.          .++...|++.++..+++.+.
T Consensus       426 -R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       426 -RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             -HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence             99999999999999999999999998774          33445666665555555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.00  E-value=2.8e-09  Score=113.22  Aligned_cols=162  Identities=14%  Similarity=0.067  Sum_probs=120.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++.+++..++.....+....+.+.|.+..++ +..+.+.+.....++..++.++.|+++||+ |||+++.++.++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            556667777777777766655555556655555 556677777788888999999999999996 999999998887777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc-cccccccc
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK-QSKKLSSY  195 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~  195 (547)
                      +.+++.+..                        .+...+++..++.+++.+...+...++++|..|.++.+ ....++..
T Consensus       300 ~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  355 (437)
T TIGR00792       300 GYLIFFFAG------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLV  355 (437)
T ss_pred             HHHHHHHcc------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHH
Confidence            766665431                        12344556667788888888888899999987743210 01116788


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchh
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMD  224 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~  224 (547)
                      ++++++...+|..+++.+.|++.+..||.
T Consensus       356 ~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       356 YSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            89999999999999999999998877764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.99  E-value=4.8e-09  Score=113.72  Aligned_cols=155  Identities=6%  Similarity=-0.037  Sum_probs=127.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++...+..++..+..++...++|.|+++.+|+++.+++.....+.++..++.+++|++.||+ |+|+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            5566666777777788888888999999999999999999999999999999999999999997 999998888887777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +.+++.....                      ..+.....+..++.|+|.|...+.....+.+..|+++      ++.+.
T Consensus       338 ~~~~l~~~~~----------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~  389 (495)
T PRK14995        338 SFYGLAMTDF----------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAG  389 (495)
T ss_pred             HHHHHHHhcC----------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHH
Confidence            7766654311                      0123334556778899999888888888888888887      88899


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcc
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTH  220 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~  220 (547)
                      +.+++..++|..+|+.+.|.+.++
T Consensus       390 ~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        390 AIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888653

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.99  E-value=1.7e-08  Score=108.54  Aligned_cols=157  Identities=10%  Similarity=-0.054  Sum_probs=109.0

Q ss_pred             HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953           58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM  137 (547)
Q Consensus        58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  137 (547)
                      .+.|.+ .+++|.+..+..+......+...++.+++|+++||+ |||+.++.+.++..++.+++......+.        
T Consensus       292 ~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~--------  361 (479)
T PRK10077        292 YYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA--------  361 (479)
T ss_pred             HHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc--------
Confidence            334444 456899887777777777888889999999999996 9999999999888888777665421000        


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHHhccc-cccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHH
Q 008953          138 VTDSENCEEAKGFKASIFFLALYLVAIGSGC-VKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVW  216 (547)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~  216 (547)
                                  ... ....+.++.+.+.+. ..|...+++.|.+|+++      |++++++.+...++|.++++.+.+.
T Consensus       362 ------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~  422 (479)
T PRK10077        362 ------------PGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPM  422 (479)
T ss_pred             ------------ccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence                        111 122233333333332 34677889999999887      9999999988888888887666554


Q ss_pred             ------hhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          217 ------VQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       217 ------l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                            +.+..+|++.|++.++..+++.+..+.
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (479)
T PRK10077        423 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK  455 (479)
T ss_pred             HHhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence                  445778888888766655555544443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.99  E-value=5.8e-11  Score=128.74  Aligned_cols=198  Identities=17%  Similarity=0.146  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHH
Q 008953           41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFIL  120 (547)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l  120 (547)
                      .+++..+.+ +..++......+-+.+.++++.+++|++.+.+-++..+..++..++++|. .|-|.+-++.++.++|.++
T Consensus         7 ~~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    7 FLCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHH
Confidence            344444455 77777777778888999999999999999999999999999999999995 7777777888889999888


Q ss_pred             HHHhhccCCCCCCCCCCCCCC----------Ccc---------------c----ccccchhHHHHHHHHHHHHhcccccc
Q 008953          121 LSVQAHLPQLKPPKCNMVTDS----------ENC---------------E----EAKGFKASIFFLALYLVAIGSGCVKP  171 (547)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~----------~~~---------------~----~~~~~~~~~~~~~~~l~gig~g~~~~  171 (547)
                      +++    |.+.-+.|.....+          ..|               .    ......+..++++.++.|+|....++
T Consensus        85 ~~l----Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t  160 (539)
T PF03137_consen   85 FAL----PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT  160 (539)
T ss_dssp             -----------------------------------------------------------------------SSS------
T ss_pred             Hhc----cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence            876    55554444211100          001               0    11122356788899999999999999


Q ss_pred             chhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhc---------------------ccc-hhhHHHH
Q 008953          172 NMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT---------------------HSG-MDVGFGV  229 (547)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~---------------------~~g-~~~~f~~  229 (547)
                      ...+++-|..++++      -..+.++++....+|.++|.++++....                     +.| |...|++
T Consensus       161 LG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli  234 (539)
T PF03137_consen  161 LGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLI  234 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHH
Confidence            99999999988877      6778899999999999999999886531                     123 6667777


Q ss_pred             HHHHHHHHHHHHHHcCceeec
Q 008953          230 SAAAMALGLFGVVSGTLYYRN  250 (547)
Q Consensus       230 ~~~~~~~~l~~~~~~~~~~~~  250 (547)
                      .+++.++..+.+....++.+.
T Consensus       235 ~g~~~~l~aipl~~FPk~lp~  255 (539)
T PF03137_consen  235 CGILLFLSAIPLFFFPKKLPG  255 (539)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHcCCccCCC
Confidence            666666655555554444433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.99  E-value=2e-08  Score=104.46  Aligned_cols=164  Identities=13%  Similarity=0.029  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.++...+...+.....+....+.|.|+.+++|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~  284 (385)
T TIGR00710       206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAV  284 (385)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            3445555555566666677777888899889999999999999999999999999999999996 999999888777777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +.+++......+                    ......+.+..++.|++.+...+.......|..|+ +      |++..
T Consensus       285 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~g~~~  337 (385)
T TIGR00710       285 SAVLLEITAILG--------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V------AGTAS  337 (385)
T ss_pred             HHHHHHHHHHhc--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c------chHHH
Confidence            766665532100                    01233344556667888888888888887887763 3      67888


Q ss_pred             hhhhhHHhH-hHHHHHHHHHHhhcccchhhHHHH
Q 008953          197 NAAYFAFST-GELVALTVLVWVQTHSGMDVGFGV  229 (547)
Q Consensus       197 ~~~~~~~~i-g~~~~~~i~~~l~~~~g~~~~f~~  229 (547)
                      ++++..... |+..+|.+ +.+.+..+|...+..
T Consensus       338 ~~~~~~~~~~g~i~~~~~-~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       338 ALFGTLRLVLGAIVGYLV-SLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhccccChHHHHHHH
Confidence            887776654 55555554 566555555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.98  E-value=1.6e-08  Score=107.12  Aligned_cols=184  Identities=11%  Similarity=-0.038  Sum_probs=122.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +..|.+++..++..-.+.+...++|.|+++.+  +............+...+.++++|+++||+ |++|++.++.+...+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            45788888888887777778789999988755  333333334455677889999999999996 999999998877666


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc---------
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK---------  187 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~---------  187 (547)
                      +........  |.                 ....+...+.+..+...++.|..+..+..++.+.||+++.+         
T Consensus       329 ~~~~~~l~l--p~-----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~  389 (462)
T PRK15034        329 FSALLFLTL--PG-----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSD  389 (462)
T ss_pred             HHHHHHHHh--cc-----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccch
Confidence            654433321  11                 01133445555555555666666667777777878741000         


Q ss_pred             ------cccccccchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHH
Q 008953          188 ------QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       188 ------~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~  242 (547)
                            .++.-+...|+......+|+.+-|.+.|...+..| +...|+...+..+++++.-+
T Consensus       390 ~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        390 EQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence                  00014556677777888888899988788776665 88888877666555554433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.97  E-value=1.2e-08  Score=110.48  Aligned_cols=172  Identities=16%  Similarity=0.072  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953           40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI  119 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~  119 (547)
                      ..++...++.++....+...+|.+..+.+|.+....|++.+++.++..++.++.+++.+|+ ++++.+..+.++..++.+
T Consensus       221 ~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~  299 (524)
T PF05977_consen  221 RSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALL  299 (524)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHH
Confidence            3334444444455555566788899999999999999999999999999999999999996 999999888888888777


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953          120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA  199 (547)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  199 (547)
                      .++++                         .+.+..++..++.|++.........+.+-+..|++.      ||+.++++
T Consensus       300 ~lal~-------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~  348 (524)
T PF05977_consen  300 LLALS-------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIY  348 (524)
T ss_pred             HHhcc-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHH
Confidence            77775                         345566777778888888877778888888899888      99999999


Q ss_pred             hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ++..+.+..+|.++.|.+.+++|.+..+.++++..+++.++...
T Consensus       349 ~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  349 QMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888777665555544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00896 CynX cyanate transporter

Probab=98.97  E-value=1e-08  Score=105.87  Aligned_cols=156  Identities=13%  Similarity=-0.022  Sum_probs=116.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.++.+.+..++....++....++|.|+++ .|++..+.+.+.+.+.++..+++++.|+++||+-+||+.+.++.++..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            455666666667777888888999999975 7999999999999999999999999999999962355566677677777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +.+.+....+                       ...  . ...++.|++.+...+...+.+.+..++++  +   ++..+
T Consensus       276 ~~~~~~~~~~-----------------------~~~--~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~---~g~~~  324 (355)
T TIGR00896       276 GLCGLLFAPM-----------------------HGL--W-AWALVLGLGQGGAFPLALTLIGLRSRQAA--Q---AAALS  324 (355)
T ss_pred             HHHHHHHhhh-----------------------hHH--H-HHHHHHHHhhhhHhHHHHHHHHHhccCHH--H---HHHHH
Confidence            6665555321                       111  1 13456788888888877776665554322  1   56777


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccc-hh
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSG-MD  224 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g-~~  224 (547)
                      ++.+...++|.+++|.+.|++.++.| |.
T Consensus       325 ~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       325 AMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            87777788899999999999998876 54

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.96  E-value=6.9e-09  Score=110.48  Aligned_cols=176  Identities=12%  Similarity=0.009  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccch--------HHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS--------FWTML  108 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr--------~~~~~  108 (547)
                      ..+|.+.+..++++++++.+..++|+|+.+.+|++..+.|+..++..+...+..+++|.++||. -+        ||.+-
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn  336 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFN  336 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHH
Confidence            5589999999999999999999999999999999999999999999999999999999999996 43        22221


Q ss_pred             -HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc
Q 008953          109 -IFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK  187 (547)
Q Consensus       109 -~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~  187 (547)
                       ++....++..+.+++..+                       .+....++...+..-..|...+....-..|..|+.   
T Consensus       337 ~i~~~~~ai~l~~l~~~~~-----------------------~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~---  390 (466)
T KOG2532|consen  337 TIAFGGPAVFLLVLAFTSD-----------------------EHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQH---  390 (466)
T ss_pred             hHHHHHHHHHHHeeeecCC-----------------------CcchHHHHHHHHHHHHcccchhhhHhhhhhccchH---
Confidence             222223333333333211                       11111112111111112222222222223334433   


Q ss_pred             cccccccchhhhhhHHhHhHHHHHHHHHHhhcc---cchhhHHHHHHHHHHHHHHHHHH
Q 008953          188 QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH---SGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       188 ~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~---~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                          -+..+++.+...++...++|.+.+.+...   ..|+..|++.++..+++-+.+..
T Consensus       391 ----a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  391 ----AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence                46678889999999999999999998842   35999999988887777655544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.95  E-value=1.6e-07  Score=94.64  Aligned_cols=181  Identities=15%  Similarity=0.131  Sum_probs=115.9

Q ss_pred             CCcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHH
Q 008953           30 PNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLI  109 (547)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~  109 (547)
                      +.+++..|+...+-.......+..   -+++- .+.++.|++..|.+.+.....+.+.+..++.|.++||+ ||||.-+.
T Consensus        30 ~~f~~Fqr~yl~vY~La~~aDWLQ---GpY~Y-~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~  104 (354)
T PF05631_consen   30 PAFRRFQRKYLLVYLLAMAADWLQ---GPYLY-ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLL  104 (354)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh---cchhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHH
Confidence            344444455544444443333322   12221 22357999999999999999999999999999999997 99998888


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCC-ccc
Q 008953          110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN-PKQ  188 (547)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~-~~~  188 (547)
                      .++++.+..+.--.                          +++..++++|++.|++.....+..-+.......++. +++
T Consensus       105 ~cily~~scl~k~~--------------------------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~  158 (354)
T PF05631_consen  105 FCILYSLSCLTKHS--------------------------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE  158 (354)
T ss_pred             HHHHHHHHHHHHhc--------------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence            88888776653322                          457789999999999999888877666543322221 111


Q ss_pred             ccccccchhhhh-hHHhHhHHHHHHHHHHhhcccch--hhHHHHHHHHHHHHHHHHHH
Q 008953          189 SKKLSSYFNAAY-FAFSTGELVALTVLVWVQTHSGM--DVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       189 ~~~r~~~~~~~~-~~~~ig~~~~~~i~~~l~~~~g~--~~~f~~~~~~~~~~l~~~~~  243 (547)
                      -  .+.-++... ....+-++.+.+++.++.+..+.  ..+|..+.++..++.+.+..
T Consensus       159 ~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  159 W--LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILK  214 (354)
T ss_pred             H--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHh
Confidence            1  222233222 12223345555566666666554  77898887776666655544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.93  E-value=3.9e-08  Score=103.55  Aligned_cols=173  Identities=17%  Similarity=0.149  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHH-HHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFI-GTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG  117 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~-~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~  117 (547)
                      ++.+++..++..........+.+.|+.+++|+++.+.+++..... ++..++.+++|++.||+ |||+.+.++.+...+.
T Consensus       211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~  289 (402)
T PRK11902        211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVS  289 (402)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            344444444433333323344566777889999999999886654 46788999999999996 9999887776665554


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHH----HHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLAL----YLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      .+.+......+                     .+...+.+..    +..+++.+...+....++.+.+|.++        
T Consensus       290 ~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------  340 (402)
T PRK11902        290 NLGYWVLAVTP---------------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ--------  340 (402)
T ss_pred             HHHHHHHHhcC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH--------
Confidence            43332211100                     1223333333    23455566666666777777777543        


Q ss_pred             cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                        ++++....++|..+++.++|++.++.||+..|.+.++..+++++..+.
T Consensus       341 --~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        341 --YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence              445444556777766778999999999999999877776666555544

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.93  E-value=1.6e-08  Score=103.11  Aligned_cols=175  Identities=15%  Similarity=0.115  Sum_probs=144.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +++..-++..++.+=...++......|...++|++..|..++.....+.+.+++++.|+|.||+ |.|+++.+++++..+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence            4666667777777777778888899999999999999999999999999999999999999996 999999999888877


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      ..+...+.                         .....+.+.-.+.|...|+.++..-++.++..|+++      -++.|
T Consensus       331 ~~~~~~~~-------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fF  379 (438)
T COG2270         331 AALYLIFL-------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFF  379 (438)
T ss_pred             HHHHHHHc-------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------cccee
Confidence            66665553                         123345555568899999999999999999999988      67889


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      +.|....-....+||...+.+.+.+| -|..+....++..++++.+..
T Consensus       380 glyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         380 GLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             ehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence            99999999999999999999988776 676666666666666655544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.93  E-value=5.3e-08  Score=102.36  Aligned_cols=167  Identities=8%  Similarity=-0.048  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.++...+..++.....+....+.++++.+++|++..+.+.+...+.++..++.++.|++.||. +|+..+. +..+..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~  293 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHH
Confidence            4455555555555555666666765555567899999999999999999999999999999994 5544343 3333333


Q ss_pred             H-HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          117 G-FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       117 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      . .++....                         .+.+.+.+..++.|++.+...+...+.+.+..|++       +++.
T Consensus       294 ~~~~l~~~~-------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~  341 (394)
T PRK10213        294 SALVLTLWG-------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKA  341 (394)
T ss_pred             HHHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHH
Confidence            3 3332222                         22344556677788888888888888888877743       3444


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG  237 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~  237 (547)
                      .++.....++|..+||.++|++.+..|++..+..+++..++.
T Consensus       342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            556666778999999999999999999988888766544333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.92  E-value=2.4e-08  Score=105.23  Aligned_cols=153  Identities=13%  Similarity=0.030  Sum_probs=107.8

Q ss_pred             hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008953           55 AVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPK  134 (547)
Q Consensus        55 ~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  134 (547)
                      ....++|.|+++..+ ++.+.+++.+...++........+++.||.++.++.+..+.++..++..++....         
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------  295 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------  295 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence            345677888876555 6778888877776665555544555555434777777777777777766665542         


Q ss_pred             CCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953          135 CNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL  214 (547)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~  214 (547)
                                      +...+.+...+.+++.+...|...+++.+..|+++      |++.+++++...++|..+||.++
T Consensus       296 ----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~  353 (400)
T PRK11646        296 ----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGG  353 (400)
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccch
Confidence                            23334555566778888888888899999999888      99999999999999999999999


Q ss_pred             HHhhcccc----hhhHHHHHHHHHHHHHH
Q 008953          215 VWVQTHSG----MDVGFGVSAAAMALGLF  239 (547)
Q Consensus       215 ~~l~~~~g----~~~~f~~~~~~~~~~l~  239 (547)
                      |++.++.+    ....|+...+..+++++
T Consensus       354 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (400)
T PRK11646        354 GWLFDLGKALNQPELPWMMLGIIGLITLL  382 (400)
T ss_pred             HHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence            99987642    24455554444444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.89  E-value=7.5e-08  Score=100.25  Aligned_cols=167  Identities=8%  Similarity=-0.017  Sum_probs=112.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchH---HHHHH-HHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSF---WTMLI-FGF  112 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~---~~~~~-~~~  112 (547)
                      +.+|.+.+..++....+|++..|+|.|+.+ .|++.. .+.......+...   +..++++||. .||   +.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence            667889899999999999999999999965 678764 5555555444444   4458888885 543   33222 222


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      +..+.........                         +.....+...+.+++.....+...++.+|.+|++.      |
T Consensus       266 ~~a~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------r  314 (368)
T TIGR00903       266 LIAAFFLALAFEL-------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------H  314 (368)
T ss_pred             HHHHHHHHHHHcc-------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------c
Confidence            2233222322221                         11223333444566666666777889999999988      9


Q ss_pred             ccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953          193 SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~  242 (547)
                      +++.++.+...++|+.++|.+.+.+..  +.+..|.+.++..+++.+...
T Consensus       315 gt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       315 GKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887773  556667666655555555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.89  E-value=3.2e-08  Score=118.12  Aligned_cols=164  Identities=12%  Similarity=0.047  Sum_probs=128.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChh-hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLS-NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~-~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      +.++..++..++..+..+....+++.|+.+.+|++.. +.+++.+...++..++.+++|+++||+ ++++.+.++.++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~  310 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA  310 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence            4455555555555666667778899999999999999 999999999999999999999999996 99998888877777


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.+++...                         .+...+++..++.|++.++..+...+++.+..|++.      |+++
T Consensus       311 ~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~  359 (1146)
T PRK08633        311 LSLFLLPTA-------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKV  359 (1146)
T ss_pred             HHHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhh
Confidence            766666654                         234456667778888888888888899999999888      9999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcc-cchhhHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTH-SGMDVGFGVSAA  232 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~-~g~~~~f~~~~~  232 (547)
                      +++.++..++|.++++.+++.+... +++...|++.+.
T Consensus       360 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        360 LAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999998888887766542 344445554433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.84  E-value=3.8e-08  Score=117.48  Aligned_cols=184  Identities=11%  Similarity=-0.071  Sum_probs=131.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.++.+++..++..+..+.+..++|.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            5577777777777777788888999999999999999999999999999999999999999986 777766665555555


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +.+.+.+... .....+....    .-.......+.+.++++.++.|++.+...+...+++.+.+|++.      |++.+
T Consensus       304 ~~~~l~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~  372 (1140)
T PRK06814        304 FGLDLAFASS-SVPAEPAQLK----SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVI  372 (1140)
T ss_pred             HHHHHHhccc-cccccccccc----chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeee
Confidence            4443333200 0000000000    00000000233456677778899999988889999999999998      99999


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhc-ccchhhHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQT-HSGMDVGFGVSAA  232 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~-~~g~~~~f~~~~~  232 (547)
                      +.+++..++|..+++++.+.+.. ..++...|++.++
T Consensus       373 g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        373 AANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            99999999999999999998863 4456655554433

>PRK09848 glucuronide transporter; Provisional

Probab=98.84  E-value=1.6e-08  Score=108.06  Aligned_cols=163  Identities=15%  Similarity=0.136  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++...++.++....++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..+
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            5566677777777777777666777788888888776666555555667788899999999996 999999999888887


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccc-ccccccc
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQ-SKKLSSY  195 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~  195 (547)
                      +.+++.+...                       .+.+.+++..++.++|.+...+...++.+|..|+++-+. ...++..
T Consensus       307 ~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~  363 (448)
T PRK09848        307 GYLLFFWVSV-----------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLT  363 (448)
T ss_pred             HHHHHHHcCc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHH
Confidence            7776655311                       234455666778899999999999999999887653111 0114777


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccch
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGM  223 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~  223 (547)
                      ++.+++...+|.++++.+.+.+.+..|+
T Consensus       364 ~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        364 YSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8889999999999999999887666555

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.84  E-value=4.7e-07  Score=96.26  Aligned_cols=161  Identities=18%  Similarity=0.107  Sum_probs=111.6

Q ss_pred             HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc--cc--hHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008953           58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF--LG--SFWTMLIFGFVELSGFILLSVQAHLPQLKPP  133 (547)
Q Consensus        58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~--~G--r~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  133 (547)
                      .....|+++++|+++++...+.+...+- ...-++.|.++|-+  +|  ||+-++++.++..++.+.++....       
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~-------   81 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA-------   81 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc-------
Confidence            3355678899999999988766655443 35678899999986  33  555555666665555554444321       


Q ss_pred             CCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHH
Q 008953          134 KCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTV  213 (547)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i  213 (547)
                                    ...+.....+..++..+|........-+.+.|...++. .+   |+...+..+....+|.+++..+
T Consensus        82 --------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-~~---~g~lqS~~~~~~~~G~lv~~~l  143 (433)
T PF03092_consen   82 --------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREP-ES---RGDLQSFVWGVRSVGSLVGSLL  143 (433)
T ss_pred             --------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-ch---hHHHHHHHHHHHHHHHHHHHHh
Confidence                          01223334455566778888888888889999876553 22   6777888888899999999999


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008953          214 LVWVQTHSGMDVGFGVSAAAMALGLFGVVSG  244 (547)
Q Consensus       214 ~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~  244 (547)
                      .|.+.+..+++..|.+.+.+..+.++..+..
T Consensus       144 ~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~  174 (433)
T PF03092_consen  144 SGPLLDSFGPQGVFLISAALPLLMLIVALFL  174 (433)
T ss_pred             hhhhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence            9999999999999988766555554443333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.83  E-value=8.2e-08  Score=102.04  Aligned_cols=162  Identities=20%  Similarity=0.171  Sum_probs=130.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++.+++..++..+.........+.|.+..+|.+ ...+.+.....+...++.++.++++||+ |+||++..+.++..+
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            55667777777777777777777788888778877 4567777788889999999999999997 999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc--ccccccc
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK--QSKKLSS  194 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~--~~~~r~~  194 (547)
                      +.++..+...                       .+.+.+++..++.|++.+...+...++++|..+.++.+  ++ ..+.
T Consensus       303 ~~~~~~~~~~-----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r-~~g~  358 (428)
T PF13347_consen  303 GFLLLFFLGP-----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRR-REGM  358 (428)
T ss_pred             HHHHHHHHHh-----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCC-chHH
Confidence            8888877631                       35667888888999999999999999999999865422  11 1466


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchh
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMD  224 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~  224 (547)
                      .++.+.+...++..+++.+.+.+.+..|+.
T Consensus       359 ~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  359 YFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            678888889999999999999887665554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.82  E-value=8.9e-09  Score=105.40  Aligned_cols=144  Identities=20%  Similarity=0.190  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCC-hhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFS-LSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG  117 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~-~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~  117 (547)
                      +|.+....+...+.++....++|.|+.+++|.+ ..+.+.+.+...+...++.++.|+++||+ |+|+...+......+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILG  286 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence            344555555566677778899999999999999 78999999999999999999999999996 9988888777776666


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953          118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN  197 (547)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  197 (547)
                      .+.+.....                      ..+....++..++.|++.+...+...+++.|.+|+++      |++..+
T Consensus       287 ~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g  338 (352)
T PF07690_consen  287 ALGLLLLPF----------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFG  338 (352)
T ss_dssp             HHHHCCSHH----------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHH
T ss_pred             HHHHHHHHH----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence            666555322                      1233445556777889999999999999999999887      999999


Q ss_pred             hhhhHHhHhHHHHH
Q 008953          198 AAYFAFSTGELVAL  211 (547)
Q Consensus       198 ~~~~~~~ig~~~~~  211 (547)
                      +.+...++|..+||
T Consensus       339 ~~~~~~~~~~~igP  352 (352)
T PF07690_consen  339 LFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC
Confidence            99999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.82  E-value=3.5e-08  Score=104.41  Aligned_cols=190  Identities=15%  Similarity=0.028  Sum_probs=129.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE  114 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  114 (547)
                      ..+.+...+.+.++..+..-.......+.+-++-|++..++.+++........+..+++.++.||+ |||+.++++..+.
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~  345 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLM  345 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence            345566666677776666555555555566667899999999999999999999999999999997 9999999999888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhcc-ccccchhhhcccCCCCCCcccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSG-CVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g-~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      .+..+++.....+...                .+.+.....+++.++..+..+ +..|..+-+.+|.+|++.      |.
T Consensus       346 ~~~~~~~~~~~~l~~~----------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~  403 (485)
T KOG0569|consen  346 AVALLLMSIALFLSNS----------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RS  403 (485)
T ss_pred             HHHHHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hH
Confidence            8877777765431110                000011112233333322222 235677788899999988      88


Q ss_pred             cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCcee
Q 008953          194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY  248 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~  248 (547)
                      .++++......+...+.......+.+..|- +.|++..+...+..+..+...|+.
T Consensus       404 aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  404 AAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            899888777777777776777777777775 455555555555555555444443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.79  E-value=3.2e-07  Score=100.46  Aligned_cols=201  Identities=18%  Similarity=0.152  Sum_probs=148.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.++.++....+....+.+......+-+.+.++++.++.|++.+.+-++..+..++..+++-|. -|-|.+-++.++.++
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL  174 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence            4455555445554444457778888888899999999999999999999999999999999996 788888899999999


Q ss_pred             HHHHHHHhhccCCCCCCCCC-----------CC-----CC------CC------ccc---ccccchhHHHHHHHHHHHHh
Q 008953          117 GFILLSVQAHLPQLKPPKCN-----------MV-----TD------SE------NCE---EAKGFKASIFFLALYLVAIG  165 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~-----------~~-----~~------~~------~~~---~~~~~~~~~~~~~~~l~gig  165 (547)
                      +.+++++    |.+..+.|+           ..     ..      +.      +..   ..+...+.+++++.++.|+|
T Consensus       175 gsll~al----PHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG  250 (735)
T KOG3626|consen  175 GSLLFAL----PHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG  250 (735)
T ss_pred             HHHHHhC----hHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC
Confidence            9999886    433322221           00     00      00      111   11122345788889999999


Q ss_pred             ccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhc------------------ccc-hhhH
Q 008953          166 SGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT------------------HSG-MDVG  226 (547)
Q Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~------------------~~g-~~~~  226 (547)
                      ...+++...+++-|...+++      -...+++.+....+|+++|.++++++..                  +.| |+..
T Consensus       251 ~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlG  324 (735)
T KOG3626|consen  251 ATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLG  324 (735)
T ss_pred             CCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHH
Confidence            99999999999888777666      6677899999999999999999887632                  234 7778


Q ss_pred             HHHHHHHHHHHHHHHHHcCcee
Q 008953          227 FGVSAAAMALGLFGVVSGTLYY  248 (547)
Q Consensus       227 f~~~~~~~~~~l~~~~~~~~~~  248 (547)
                      |++++.+.++..+.+++..+..
T Consensus       325 FLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  325 FLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             HHHHHHHHHHHHHHHHhCcccC
Confidence            8888888777777777655544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.79  E-value=2.1e-07  Score=97.80  Aligned_cols=155  Identities=12%  Similarity=-0.029  Sum_probs=112.1

Q ss_pred             HHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008953           50 IMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQ  129 (547)
Q Consensus        50 ~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~  129 (547)
                      ..........++.|+++.+|.++.+.+.+.....++..++.++.+++.||+ ++++.+..+.. ..+...++...     
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~-----  290 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQ-----  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHH-----
Confidence            344445555677888888999999999999999999999999999999996 99888777643 33333333332     


Q ss_pred             CCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHH
Q 008953          130 LKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELV  209 (547)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  209 (547)
                                          .+.+...+..++.|++.+...+...+.+.+..|++.     .++++.+..+...++|..+
T Consensus       291 --------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~  345 (393)
T PRK11195        291 --------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLL  345 (393)
T ss_pred             --------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHH
Confidence                                233445556667888888877777787776544321     1588899999999999999


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953          210 ALTVLVWVQTHSGMDVGFGVSAAAMALG  237 (547)
Q Consensus       210 ~~~i~~~l~~~~g~~~~f~~~~~~~~~~  237 (547)
                      +..+.+.+ ...|-++.+.+.++..++.
T Consensus       346 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~  372 (393)
T PRK11195        346 MLGLYSLL-VKLGVPVVAVIVGFGLLVA  372 (393)
T ss_pred             HHHHHHHH-HHcCCCHHHHHHHHHHHHH
Confidence            99998866 4578776666655444443

>PRK11043 putative transporter; Provisional

Probab=98.78  E-value=3.8e-07  Score=95.88  Aligned_cols=157  Identities=10%  Similarity=-0.046  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953           40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI  119 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~  119 (547)
                      +...+...+....++....+.|.|++ ++|++..+.++......++..++.++++++.||+ |+|+.+....+...++.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~  283 (401)
T PRK11043        206 LGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVI  283 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence            33333344444555566677888875 5899999999888888888889999999999996 999987666555555444


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953          120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA  199 (547)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  199 (547)
                      .+........                    .+...+++...+.+++.+...+...+...+..|+ +      ++++.+++
T Consensus       284 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~  336 (401)
T PRK11043        284 AIWLASLLSH--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQ  336 (401)
T ss_pred             HHHHHHHhcc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHH
Confidence            3332211000                    2233344555667788888888877777777664 4      78889998


Q ss_pred             hhHHhHhHHHHHHHHHHhhcccchhh
Q 008953          200 YFAFSTGELVALTVLVWVQTHSGMDV  225 (547)
Q Consensus       200 ~~~~~ig~~~~~~i~~~l~~~~g~~~  225 (547)
                      +.....++.+++.+.+.+.+......
T Consensus       337 ~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        337 NTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHHHHHHHccCCChhHH
Confidence            88878888888888888876544333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.77  E-value=3.2e-07  Score=91.92  Aligned_cols=167  Identities=13%  Similarity=0.001  Sum_probs=131.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +..|.+.+-.-++++.+|.++.|+|.++.+ .|+|..++|..++...+......+..-++++|...+|+......+...+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            446778887888999999999999999974 9999999999999999999999999999999875677777777778888


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      |.+.+.+...                       ..   .+...+++|+|.|+..|...+++.+..++.+  +   -++..
T Consensus       287 G~~G~~~~P~-----------------------~~---~~lw~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LS  335 (395)
T COG2807         287 GLVGLLLAPG-----------------------QL---PILWALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALS  335 (395)
T ss_pred             HHHHHHHhhh-----------------------hH---HHHHHHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHH
Confidence            8877776421                       12   2233478999999999999999988877543  1   23444


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMA  235 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~  235 (547)
                      +..+-...+=++.||++.|++-|..| |+.++...+...+
T Consensus       336 gmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i  375 (395)
T COG2807         336 GMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL  375 (395)
T ss_pred             HHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence            55555667778889999999999887 9877776544433

>TIGR00898 2A0119 cation transport protein

Probab=98.75  E-value=8.6e-08  Score=104.04  Aligned_cols=141  Identities=9%  Similarity=-0.082  Sum_probs=97.6

Q ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccc
Q 008953           67 EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEE  146 (547)
Q Consensus        67 ~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (547)
                      .++.+...   ......+....+.+++++++||+ |||+.+.++.++..++.+++....+                    
T Consensus       352 ~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~--------------------  407 (505)
T TIGR00898       352 NLGGNIYL---DLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV--------------------  407 (505)
T ss_pred             ccCCChHH---HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------
Confidence            45555432   23344556677888999999996 9999999988887777766665422                    


Q ss_pred             cccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhH
Q 008953          147 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVG  226 (547)
Q Consensus       147 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~  226 (547)
                         .......+..++.+++.+...+...++.+|.+|++.      |++++++.+....+|.+++|.+.+ +.+ .++..+
T Consensus       408 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~  476 (505)
T TIGR00898       408 ---DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLP  476 (505)
T ss_pred             ---CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhH
Confidence               111223333344455556666777888999999887      999999999999999999999988 443 456667


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008953          227 FGVSAAAMALGLFGVV  242 (547)
Q Consensus       227 f~~~~~~~~~~l~~~~  242 (547)
                      +++.++..+++.+..+
T Consensus       477 ~~~~~~~~~~~~~~~~  492 (505)
T TIGR00898       477 LVLFGGLALLAGILTL  492 (505)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7766655555544433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.74  E-value=5.1e-07  Score=94.56  Aligned_cols=73  Identities=19%  Similarity=0.147  Sum_probs=60.5

Q ss_pred             HHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 008953           51 MAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQ  124 (547)
Q Consensus        51 ~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~  124 (547)
                      ........+.|.|+.+++|+++.+.+.......++..++.++.|++.||+ |||+.+.++.++..++.+++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445667788888999999999999999999999999999999996 99999999988888777776664

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=4.8e-08  Score=105.30  Aligned_cols=176  Identities=13%  Similarity=0.090  Sum_probs=145.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccc--hHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLG--SFWTMLIFGFVE  114 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G--r~~~~~~~~~~~  114 (547)
                      +.++.+++-..+..+.++.-..+++.|.. .++++..+++.++++..+...+++++.|+++|+. .  ++....++++..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            66778888888888888888888999987 7999999999999999999999999999999996 6  334444556666


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                      .+....+++.+                         ++..++..-.+.|+..|.+.+.....+.|..+.++      ...
T Consensus       376 gl~~~~~p~~~-------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~  424 (509)
T KOG2504|consen  376 GLARLFLPFAT-------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSN  424 (509)
T ss_pred             HHHHHHHHHhc-------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cch
Confidence            66666666653                         34557777778899899888888888899999887      888


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcC
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSGT  245 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~~  245 (547)
                      ++++..+...+++.+||.+.|++.+..| |...|+.+++..+++.+..+...
T Consensus       425 a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  425 AYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999999999888 99999998887777765555443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.73  E-value=1.2e-07  Score=98.01  Aligned_cols=145  Identities=16%  Similarity=0.121  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHH-HHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           38 AAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFI-GTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~-~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      .++.+.+..++....++....+.+.|+.+ +|+++.+.+.+..... +...++.+++|+++||+ |||+.+..+.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            36666666777788888888999999987 9999999998887665 56789999999999996 999998888877766


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +..+.....+...         +  .|   .+..+...+..+.++.+++.+...+...++..|.+|+++      |++.+
T Consensus       288 ~~~~~~~~~~~~~---------~--~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~  347 (356)
T TIGR00901       288 TNAGFVWLASNGH---------H--DG---ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQM  347 (356)
T ss_pred             HHHHHHHHHhcCc---------c--cc---cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHH
Confidence            6554444321000         0  00   000123456666777899999999999999999999998      99999


Q ss_pred             hhhhhHHh
Q 008953          197 NAAYFAFS  204 (547)
Q Consensus       197 ~~~~~~~~  204 (547)
                      ++++...|
T Consensus       348 g~~~~~~~  355 (356)
T TIGR00901       348 ALLSSLSA  355 (356)
T ss_pred             HHHHHHHh
Confidence            98776554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.71  E-value=6.4e-07  Score=93.10  Aligned_cols=150  Identities=14%  Similarity=0.057  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |..+..++..++.....+....+.|.++.+++|+++.+.+.+.....++..++.+++|+++||+ |||+.+..+.++..+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~  272 (377)
T PRK11102        194 KRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFI  272 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence            3445555555566666666667778888888999999999999999999999999999999996 999999888765444


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      ..+.+......+                     .....+.++..+.+.+.+...+.....+.|..| +.      +++..
T Consensus       273 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~  324 (377)
T PRK11102        273 MGIWLVVSALLD---------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTAS  324 (377)
T ss_pred             HHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHH
Confidence            332222211000                     122223333334444444545555566666665 34      67777


Q ss_pred             hhhhhH-HhHhHHHHHHHHH
Q 008953          197 NAAYFA-FSTGELVALTVLV  215 (547)
Q Consensus       197 ~~~~~~-~~ig~~~~~~i~~  215 (547)
                      +..+.. ..+|..+++.+++
T Consensus       325 ~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        325 SLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            775543 3466677766643

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.70  E-value=5.9e-08  Score=100.30  Aligned_cols=141  Identities=13%  Similarity=0.069  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.++.+.+..++.....+.+..+.+.|+++.+|+++.+++.+.....+...++.+++|+++||+ |||+.+..+......
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~  303 (366)
T TIGR00886       225 RHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAM  303 (366)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHH
Confidence            3455666666666667777888999999999999999999999999999999999999999997 999888877766666


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +..++.....                     +..+...+.+...+.+++.|...+...+..++.+|+ +      +++.+
T Consensus       304 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~  355 (366)
T TIGR00886       304 GAFLVVLGLV---------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVS  355 (366)
T ss_pred             HHHHHHhcCC---------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHH
Confidence            6555544311                     001333344444555556666666677777887763 4      78889


Q ss_pred             hhhhhHHhHh
Q 008953          197 NAAYFAFSTG  206 (547)
Q Consensus       197 ~~~~~~~~ig  206 (547)
                      ++.+...++|
T Consensus       356 g~~~~~~~~g  365 (366)
T TIGR00886       356 GLVGAIGNLG  365 (366)
T ss_pred             HHHHHhccCC
Confidence            8887777765

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.69  E-value=3.3e-07  Score=91.58  Aligned_cols=171  Identities=9%  Similarity=-0.036  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhc--C----CChhhHH-------------HHHHHHHHHHHHHHhhhhHHhhc
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEM--H----FSLSNSA-------------NIVTNFIGTVFLLALLGGYLSDS   99 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g----~~~~~~~-------------~i~~~~~~~~~~~~~~~G~laDr   99 (547)
                      -..+..+.+.+.+.||+++-..+...+...  |    ..+.+.-             .=+.+..+..+-+.++.+++.||
T Consensus       328 tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iver  407 (528)
T KOG0253|consen  328 TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVER  407 (528)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHH
Confidence            344555667788999998766554443211  0    1111111             11333455667788999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhccc
Q 008953          100 FLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGAD  179 (547)
Q Consensus       100 ~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~  179 (547)
                      + |||++|..+++++.+..+++....+                     ......+++.+|++...    .....+.+..|
T Consensus       408 l-GRKkTMal~l~~f~iflfll~~c~~---------------------rn~~tvllf~arafisg----~fqvaYvYtPE  461 (528)
T KOG0253|consen  408 L-GRKKTMALSLILFGIFLFLLTTCKT---------------------RNAYTVLLFTARAFISG----AFQVAYVYTPE  461 (528)
T ss_pred             h-cchhHHHHHHHHHHHHHHHHHHhcC---------------------cchhHHHHHHHHHHHhc----hheEEEEecCc
Confidence            5 9999999999999888887776532                     11223456667766543    33456788899


Q ss_pred             CCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          180 QFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       180 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      .+|.+.      |+.+.|....+.-+|+++.|++. ...+. .-..+..+..++.+++.+...+
T Consensus       462 VyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e~-s~sl~i~vy~~~~ilagIavcf  517 (528)
T KOG0253|consen  462 VYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAEL-STSLPIFVYGALFILAGIAVCF  517 (528)
T ss_pred             ccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhcc-ceeehHHHHHHHHHHHHHHhee
Confidence            999988      99999999999999999999997 33332 2233444445555555444443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.63  E-value=8.6e-07  Score=93.09  Aligned_cols=178  Identities=15%  Similarity=0.059  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      ++..++..+......-....+.+.|+++.-|.+....+.+.+...+.-...-.+.+++..|+ |.|+++.++.+...+=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            33444444555555555567888998764447777778777777788888888999999996 99999999999888877


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA  198 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  198 (547)
                      .+.+...+ |.                   ........+...+.|+..+........++.+..|++.      |.++.++
T Consensus       288 ~l~a~~~~-~~-------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l  341 (400)
T PF03825_consen  288 LLYAYFSD-PW-------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGL  341 (400)
T ss_pred             HHHHHhcC-Cc-------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHH
Confidence            77766522 00                   0001112233456788888888888999999999988      8999999


Q ss_pred             hhhH-HhHhHHHHHHHHHHhhcccchhh------HHHHHHHHHHHHHHHHHH
Q 008953          199 AYFA-FSTGELVALTVLVWVQTHSGMDV------GFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       199 ~~~~-~~ig~~~~~~i~~~l~~~~g~~~------~f~~~~~~~~~~l~~~~~  243 (547)
                      +... ..+|.++|..++|++.+++|-+.      .+.++++..++..+.++.
T Consensus       342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            8775 57999999999999999877443      344444444444444444

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.61  E-value=7.2e-07  Score=94.31  Aligned_cols=163  Identities=10%  Similarity=0.061  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           38 AAVFVLGLQAFEIMAIAAVGNNLITYVINE-MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      .++..++..++......++..+++.|+.+. .+.+...++...+.+.....++++++|+++||+ ++||.+.++.+...+
T Consensus       233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~  311 (410)
T TIGR00885       233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA  311 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence            344445555555555556678899998653 245555556667777788899999999999996 999998888777777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      ..++......                         .. .....++.+++.++..|...+...+..+++.       ..+.
T Consensus       312 ~~ll~~~~~~-------------------------~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s  358 (410)
T TIGR00885       312 LCLGSIFAGG-------------------------HV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGA  358 (410)
T ss_pred             HHHHHHHcCC-------------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhH
Confidence            6666665321                         11 2445566778888888999999999888654       1223


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhccc------chhhHHHHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHS------GMDVGFGVSAAAMA  235 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~------g~~~~f~~~~~~~~  235 (547)
                      +...++ .+|+++.|.+.|++.|..      +.+..|+++..+.+
T Consensus       359 ~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       359 AGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             HHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            333333 389999999999999954      47788887654433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09669 putative symporter YagG; Provisional

Probab=98.61  E-value=6.2e-07  Score=95.80  Aligned_cols=162  Identities=13%  Similarity=0.066  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++.++...++.......... ...|..+...-++...+.+.....+...++.+++++++||+ |||+.+.++.+...+
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~  306 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI  306 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHhh-hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            3344454444444444433223 33444333222233344455566677778889999999996 999999888766554


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCC--ccccccccc
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN--PKQSKKLSS  194 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~  194 (547)
                      ......+..   .                    .+...+++..++.+++.+...+...++++|..+.++  .+++ ..+.
T Consensus       307 ~~~~~~~~~---~--------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r-~~g~  362 (444)
T PRK09669        307 LSALIFFIP---P--------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRR-LDGL  362 (444)
T ss_pred             HHHHHHHhC---c--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcC-cchH
Confidence            433332221   1                    344556666778899999999999999999987543  2221 1345


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchh
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMD  224 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~  224 (547)
                      .++.+.+...+|.++|+.++|++.+..|+.
T Consensus       363 ~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        363 VFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            567888888999999999999988777763

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.60  E-value=2.2e-07  Score=100.07  Aligned_cols=165  Identities=13%  Similarity=0.008  Sum_probs=113.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++.++...++.....+......+.|.+..++ +....+.+.....++..++.++.++++||+ |+|+++.++.++..+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            666667777777777666655555544443333 455566666666678888999999999996 999999988876666


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCC--ccccccccc
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN--PKQSKKLSS  194 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~  194 (547)
                      +.+........+                    ..+...+++..++.+++.+...+...++++|..|.++  .+++ ..+.
T Consensus       309 ~~~~~~~~~~~~--------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R-~~G~  367 (473)
T PRK10429        309 SCGVLLLMGLAA--------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIR-CESI  367 (473)
T ss_pred             HHHHHHHHhccC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCcc-chhH
Confidence            655544321000                    1234455566667888888888888999999977542  2221 0344


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchh
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMD  224 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~  224 (547)
                      .++...+...+|.++++.+.|++.+..|++
T Consensus       368 ~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~  397 (473)
T PRK10429        368 AYSVQTMVVKGGSAFAAFFIGVVLGLIGYV  397 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            677888888999999999999987766663

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.53  E-value=3.9e-06  Score=87.92  Aligned_cols=139  Identities=11%  Similarity=0.015  Sum_probs=96.0

Q ss_pred             HHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 008953           57 GNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCN  136 (547)
Q Consensus        57 ~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  136 (547)
                      ....+.|+.+.+|.++.+.++.......+..++.++.+++.||+ +++...  ......++.+.........        
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~--------  295 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG--------  295 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc--------
Confidence            34567788888999999999988888888888889999999996 743332  2222222222211110000        


Q ss_pred             CCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHH
Q 008953          137 MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVW  216 (547)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~  216 (547)
                                  ..+...+++..++.++|.+...|...+...|.+|+ +      +++..++.+...++|..+++.++++
T Consensus       296 ------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~  356 (394)
T PRK11652        296 ------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAM  356 (394)
T ss_pred             ------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        02334456667778888888888888888888874 3      6778888888889999999999998


Q ss_pred             hhcccchhh
Q 008953          217 VQTHSGMDV  225 (547)
Q Consensus       217 l~~~~g~~~  225 (547)
                      +.....+..
T Consensus       357 ~~~~~~~~~  365 (394)
T PRK11652        357 LPQTGQFSL  365 (394)
T ss_pred             ccCCchHHH
Confidence            876644443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.52  E-value=1.1e-06  Score=91.50  Aligned_cols=173  Identities=10%  Similarity=0.042  Sum_probs=133.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC---CChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMH---FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF  112 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  112 (547)
                      .|++|.+.+........|+..-.-.+.|.+..++   .++...|...+...+.-++.-.+..++-+|+ |.|+.++++.+
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence            4778877776666666666665667888875443   3445578888888889999999999999996 99999999998


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      ...+=-+++++++                         +++.+.+...+.++-.+..-..+.-++++.+|++-      .
T Consensus       298 i~~iRi~~~~~~~-------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------s  346 (412)
T PF01306_consen  298 IMAIRIIGSGFAT-------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------S  346 (412)
T ss_dssp             HHHHHHHHHHT---------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------H
T ss_pred             HHHHHHHHHhhhc-------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------H
Confidence            8888878888874                         45668888999988888888888899999999765      5


Q ss_pred             ccchhh-hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008953          193 SSYFNA-AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       193 ~~~~~~-~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~  240 (547)
                      .+.+.+ +..+..+|..+.+.+.|++.++.|.+..|++.+..+++..+.
T Consensus       347 At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li  395 (412)
T PF01306_consen  347 ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLI  395 (412)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHH
Confidence            667776 467789999999999999999999998888766555544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.45  E-value=2.2e-06  Score=90.17  Aligned_cols=163  Identities=17%  Similarity=0.177  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.+.+++...++...+.....+...-|.+-.+|.++.+..........+..++.++..++++|+ |+|+++.++.++..+
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence            4455556666666666665566667777777888888888888888888888899999999996 999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCC--ccccccccc
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN--PKQSKKLSS  194 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~  194 (547)
                      +.+++.+...                       ++...+++..++.++|.+...+..+++++|..+.++  +++|. -|-
T Consensus       315 ~~~~~~f~~~-----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~-eGi  370 (467)
T COG2211         315 GYLLLYFTPA-----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRR-EGI  370 (467)
T ss_pred             HHHHHHhhcC-----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCc-hhh
Confidence            9999888632                       566778888889999999999999999999987543  33321 234


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhcccchh
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQTHSGMD  224 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~  224 (547)
                      .++.+.+..=+|.+++..+.|++....|+.
T Consensus       371 ~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv  400 (467)
T COG2211         371 VYSGMTFFRKLGLALAGFIPGWILGAIGYV  400 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            456666666778888888888876655543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.40  E-value=1e-05  Score=78.81  Aligned_cols=180  Identities=13%  Similarity=0.075  Sum_probs=115.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      |-.+...++++.+.. +.|.... ..+.+++.+|+|.+|...+.....++..++ ++.|.+.|++ |.+.++.++.+...
T Consensus         2 W~~l~a~~~v~~~~G-t~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~   77 (250)
T PF06813_consen    2 WLSLVASIWVQLCSG-TTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGF   77 (250)
T ss_pred             hhhHHHHHHHHHhcC-cccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHH
Confidence            344444445554443 4444433 445678899999999999999999998874 8899999997 99999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      +|..++..+.+-.                  ....+.+.+++..++.+.+.+...........+.||+ +      ||++
T Consensus        78 ~GY~~~~l~~~~~------------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~v  132 (250)
T PF06813_consen   78 VGYGLLWLAVSGR------------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTV  132 (250)
T ss_pred             HHHHHHHHHHhCc------------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCce
Confidence            9998888774311                  1113455666655566665555444444445678985 4      8899


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSG  244 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~  244 (547)
                      .++.-....+++++=..+...+...-.-...+++.....+++++...+.
T Consensus       133 vgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~v  181 (250)
T PF06813_consen  133 VGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFV  181 (250)
T ss_pred             ehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhe
Confidence            9887666666665544444444333223333334444444444444443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.37  E-value=1.2e-05  Score=85.02  Aligned_cols=170  Identities=14%  Similarity=0.076  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++...+..++.....+....+.|.|+++.+|++..+.++......++..++..+.+.+.++. +++|.+.....+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            5677777777777777777778889999998999999999998888888888777777766543 444444333333344


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +..++.......                    ..+....+++.++.++|.+...|+..+..-  .+.+.+     +++..
T Consensus       297 g~~l~~~~~~~~--------------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~  349 (413)
T PRK15403        297 GLALLIVGNLLW--------------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVS  349 (413)
T ss_pred             HHHHHHHHHHHc--------------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHH
Confidence            444333321000                    012223456677788888887777764332  222211     56677


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMA  235 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~  235 (547)
                      ++++.....+..+++...+++..+ +-+++|....+...
T Consensus       350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~  387 (413)
T PRK15403        350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence            777777777888888888888765 55566665444333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.34  E-value=1.8e-05  Score=80.71  Aligned_cols=156  Identities=11%  Similarity=0.145  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953           38 AAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG  117 (547)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~  117 (547)
                      .++.-.+..|+---.--+..++++.|+.+..|++..++...++.+..+..+++.++-++-.|+ -..|.+....+...+.
T Consensus       237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill  315 (422)
T COG0738         237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL  315 (422)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence            334444444444344444558899999988999999999999999999999999999998896 8888777766554444


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953          118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN  197 (547)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  197 (547)
                      .+..++..                         +. .-+.+.++.|+..+...|++.+...+..|++.        +.-+
T Consensus       316 ~~~~~l~~-------------------------g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s  361 (422)
T COG0738         316 LLAVALIG-------------------------GV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGS  361 (422)
T ss_pred             HHHHHHhc-------------------------Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------cccc
Confidence            44444432                         11 23344567889999999999999999999443        2222


Q ss_pred             hhhhHHhHhHHHHHHHHHHhhcccchhhHHH
Q 008953          198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFG  228 (547)
Q Consensus       198 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~  228 (547)
                      ..-...-+|+++.|.+.|++.|..|-...+.
T Consensus       362 ~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         362 GLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             eeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            2233445689999999999999999776665

>PRK11462 putative transporter; Provisional

Probab=98.32  E-value=2.1e-05  Score=84.55  Aligned_cols=158  Identities=15%  Similarity=0.136  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      ++.++...++..............|.+..+|. +...+.+...+.+...++.+++++++||+ |+|+.+..+.....+..
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~  307 (460)
T PRK11462        230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVIS  307 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            33333333444343333333333333333443 33345667777788888999999999996 99998776555444433


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCC--ccccccc-ccc
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN--PKQSKKL-SSY  195 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~--~~~~~~r-~~~  195 (547)
                      ++..+...                       .+...+++..++.|++.+...+...++.+|..+.++  .+++  | +..
T Consensus       308 ~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r--~~g~~  362 (460)
T PRK11462        308 LAMFFVPM-----------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKR--LTGIS  362 (460)
T ss_pred             HHHHHhch-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCC--chHHH
Confidence            33322211                       122223344455677777777777788888877432  2221  2 333


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccch
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGM  223 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~  223 (547)
                      ++...+...+|.++++.++|++.+..|+
T Consensus       363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        363 FAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5666677889999999998887665555

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.26  E-value=3.7e-05  Score=80.80  Aligned_cols=111  Identities=14%  Similarity=0.139  Sum_probs=84.2

Q ss_pred             ccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHH
Q 008953          385 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ  464 (547)
Q Consensus       385 ~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  464 (547)
                      ....+-.+-+++-++..++    .+|+++       .+.+..|+.+.++-++.+...              .++|..++.
T Consensus       411 ~~a~~~~gEI~~~ffs~kl----I~kiGH-------v~v~~lgLa~~~~Rf~~~S~L--------------~n~W~vLPi  465 (618)
T KOG3762|consen  411 VSALCHAGEILFYFFSFKL----IEKIGH-------VNVMYLGLACNVGRFLYYSYL--------------QNPWMVLPI  465 (618)
T ss_pred             hhhhhccchHHHHHHHHHH----HHHhcc-------cceeeehhhHHHHHHHHHHHh--------------cCchheeeH
Confidence            3344444444444444444    345443       245778999999999888886              388888999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 008953          465 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC-SYSFGFYLSSLLVSFVNKV  520 (547)
Q Consensus       465 ~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~-~~~~G~~lg~~i~~~l~~~  520 (547)
                      -++.|+..+++.....+|+...+|++.|++++++... .-++|..+|++|.+.+...
T Consensus       466 eilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~  522 (618)
T KOG3762|consen  466 EILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER  522 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence            9999999999999999999999999999999999886 4577777777777766543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.25  E-value=1.4e-05  Score=76.63  Aligned_cols=153  Identities=15%  Similarity=0.180  Sum_probs=91.5

Q ss_pred             HHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 008953           62 TYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDS  141 (547)
Q Consensus        62 ~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~  141 (547)
                      -|+.+.+|+...|.+....+......+...+.|-++||- |||+.    ++.+.+..+++-+..+               
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKra----cvtycitYiLsCiTKh---------------  120 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRA----CVTYCITYILSCITKH---------------  120 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccc----eeeehHHHHHHHHhhc---------------
Confidence            456678899999999998888888889999999999996 99994    3444455555555432               


Q ss_pred             CcccccccchhHHHHHHHHHHHHhccccccchhhh-cccCCCCCCcccccccccchhh-hhhHHhHhHHHHHHHHHHhhc
Q 008953          142 ENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAH-GADQFDQSNPKQSKKLSSYFNA-AYFAFSTGELVALTVLVWVQT  219 (547)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~~~~i~~~l~~  219 (547)
                             .+++-.++++|++-|+..+...+..-+. ++|.-+++.-. ++=..--++- ..+...+=++++.+.+..+.+
T Consensus       121 -------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe-qqWls~TFskA~ffgNglvAiiaGlfgn~lvd  192 (454)
T KOG4332|consen  121 -------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE-QQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVD  192 (454)
T ss_pred             -------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh-HhhhhHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence                   1334458899999999888776666544 35544322200 0001111111 111222334444444555665


Q ss_pred             ccc--hhhHHHHHHHHHHHHHHHHH
Q 008953          220 HSG--MDVGFGVSAAAMALGLFGVV  242 (547)
Q Consensus       220 ~~g--~~~~f~~~~~~~~~~l~~~~  242 (547)
                      +++  ...+|-..+....++....+
T Consensus       193 ~~slGPVAPFdAAacfLaigmAvil  217 (454)
T KOG4332|consen  193 TFSLGPVAPFDAAACFLAIGMAVIL  217 (454)
T ss_pred             HhccCCCCchHHHHHHHHHHHHHHH
Confidence            544  55667766555555544443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.20  E-value=0.001  Score=69.23  Aligned_cols=157  Identities=11%  Similarity=0.035  Sum_probs=101.8

Q ss_pred             hHHHHHHHhhhh-cCCChhhHH-HHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008953           56 VGNNLITYVINE-MHFSLSNSA-NIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPP  133 (547)
Q Consensus        56 ~~~~l~~yl~~~-lg~~~~~~~-~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  133 (547)
                      .-+++..|+.+. .|++..|.. -+.-...-......++...+.|.. |.|++++++.+...+.-.++....+       
T Consensus        22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~s-------   93 (412)
T PF01770_consen   22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGTS-------   93 (412)
T ss_pred             CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHCc-------
Confidence            347889999987 899998864 444444556667778899999985 9999999988887777777666533       


Q ss_pred             CCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHH
Q 008953          134 KCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTV  213 (547)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i  213 (547)
                                        ...+-+.-++.|+..+.. ....+++=...|+++      -.++.+....+.-+|-.++.++
T Consensus        94 ------------------v~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~l  148 (412)
T PF01770_consen   94 ------------------VLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLL  148 (412)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                              344555556666655542 233344444445544      4455666666666677777666


Q ss_pred             HHHhhc--ccchhhHHHHHHHHHHHHHHHHHHcC
Q 008953          214 LVWVQT--HSGMDVGFGVSAAAMALGLFGVVSGT  245 (547)
Q Consensus       214 ~~~l~~--~~g~~~~f~~~~~~~~~~l~~~~~~~  245 (547)
                      +-.+..  ...+....++......+++++.++..
T Consensus       149 gQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  149 GQLLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            544443  23356666677666666766655543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.20  E-value=4.9e-06  Score=85.72  Aligned_cols=167  Identities=16%  Similarity=0.118  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHHHHHHHHH-
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFWTMLIFGF-  112 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~~~~~-  112 (547)
                      +.++.+..+.+...+.+-.=..++++|+++ +|.+..-.+.+-.+.-+...+.+|+.|..+||+   +||||.++.... 
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            677777888888888887778899999974 999998889998999999999999999999986   688888776544 


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      ..+++.+++..+.++...+.++.+        ..........++++.-+.=+.+...+...-++.+|..-.++.++   |
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~--------~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~---~  179 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNER--------KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT---R  179 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcc--------cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh---c
Confidence            566788888888776665543332        01222334556666666677777778888899999987665221   3


Q ss_pred             ccchhhhhhHHhHhHHHHHHHHHHh
Q 008953          193 SSYFNAAYFAFSTGELVALTVLVWV  217 (547)
Q Consensus       193 ~~~~~~~~~~~~ig~~~~~~i~~~l  217 (547)
                        +.+++...+.+|..+|...+++.
T Consensus       180 --Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  180 --ANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             --cchhHHHHHHhcceeeeeccccc
Confidence              78888888999999888877644

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.17  E-value=2.7e-05  Score=83.96  Aligned_cols=180  Identities=11%  Similarity=-0.001  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhh----HHHHHHHHHHHHHHHHhhhh----HHhhcccchHHH--HHHHH
Q 008953           42 VLGLQAFEIMAIAAVGNNLITYVINEMHFSLSN----SANIVTNFIGTVFLLALLGG----YLSDSFLGSFWT--MLIFG  111 (547)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~----~~~i~~~~~~~~~~~~~~~G----~laDr~~Gr~~~--~~~~~  111 (547)
                      +++...+....+.-..+.++.|..+..+.+...    .+++.+.-.+...+..++..    ++.||-.+.+..  +.+|.
T Consensus       277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~  356 (475)
T TIGR00924       277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGM  356 (475)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence            333333444444444555777776655543222    45555555555555555433    455542133333  36777


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953          112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK  191 (547)
Q Consensus       112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~  191 (547)
                      ++..++.+.++++.....                .....+++.+.+..++.++|.....|...+++.+..|++.      
T Consensus       357 ~l~~~~~~~~~~~~~~~~----------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------  414 (475)
T TIGR00924       357 LFCGASFLTFAASIWFAD----------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------  414 (475)
T ss_pred             HHHHHHHHHHHHHHhhcC----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------
Confidence            777777777665321000                0012466778888999999999999999999999999887      


Q ss_pred             cccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      |+++++++.....+|..+++.+.....+..+|...|...++.+++..+.++.
T Consensus       415 ~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       415 MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887777667877776655554444444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.15  E-value=5.4e-05  Score=74.42  Aligned_cols=144  Identities=17%  Similarity=0.179  Sum_probs=106.6

Q ss_pred             HHHHHHhhhhcCCCh--hhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008953           58 NNLITYVINEMHFSL--SNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKC  135 (547)
Q Consensus        58 ~~l~~yl~~~lg~~~--~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  135 (547)
                      ...+.+. .+++.+.  ...+++.+.+.+...++.++.|.++||+ |||+.+..+.....++.+++.+..+         
T Consensus        23 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------   91 (338)
T COG0477          23 PALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------   91 (338)
T ss_pred             HHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence            3344444 3455554  4788999999999999999999999997 9998888887765555555555421         


Q ss_pred             CCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC-CCcccccccccchhhhhh-HHhHhHHHHHHH
Q 008953          136 NMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ-SNPKQSKKLSSYFNAAYF-AFSTGELVALTV  213 (547)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~~~~~i  213 (547)
                                    .....+.+.|+..|++.+...+...+++.|.+|+ +.      |+...+.... ...+|..++|.+
T Consensus        92 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  151 (338)
T COG0477          92 --------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLL  151 (338)
T ss_pred             --------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                          2356688888889999998899999999999997 33      7777887777 577888888877


Q ss_pred             HHHhhcc--cchhhHHHHHHH
Q 008953          214 LVWVQTH--SGMDVGFGVSAA  232 (547)
Q Consensus       214 ~~~l~~~--~g~~~~f~~~~~  232 (547)
                      ++.+...  .+|+..|.....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~  172 (338)
T COG0477         152 AGLLLGALLWGWRAAFLLAAL  172 (338)
T ss_pred             HHHHHHHHhcchHHHHHHHHH
Confidence            7766554  468885555443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.14  E-value=2.3e-08  Score=106.85  Aligned_cols=182  Identities=16%  Similarity=0.018  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.....+....+..+..+....+..+++.+..+.++.  -.......+...++.+++.++.||+ |||+.++.+.++..+
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~  328 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI  328 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence            4455555555566555554555555556666777666  2233344455667778888999996 999999998887777


Q ss_pred             HHHHHH-HhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          117 GFILLS-VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       117 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ..+.+. .......          .      .+..+...+............+..+....+.+|.||.+.      |.++
T Consensus       329 ~~~~~~~~~~~~~~----------~------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~  386 (451)
T PF00083_consen  329 CSLILGIIFFLGVS----------S------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTG  386 (451)
T ss_pred             cccccccccccccc----------c------ccccccccceeeeeccccccccccccccccccccccccc------cccc
Confidence            666654 1100000          0      000011111111111112222344566688899999998      9999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      .++.+....+++++++.+..++.+..+-...|.+.++..++..+..+.
T Consensus       387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~  434 (451)
T PF00083_consen  387 IGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF  434 (451)
T ss_pred             cccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence            999999889999999988888887766233455444444444444433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.12  E-value=6.5e-06  Score=88.24  Aligned_cols=164  Identities=15%  Similarity=0.042  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFWTMLIFGFV  113 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~~~~~~  113 (547)
                      ..+|..++..++.....|++..|+|.|+++..|++..+++.+...+.++..++.+++|+++||.   ..+|........+
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~  352 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL  352 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4578999999999999999999999999987789999999999999999999999999999993   2666666655554


Q ss_pred             HH-HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          114 EL-SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       114 ~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      .. ++.+.+.....                         ......+.+....+.....+.......+....+. +    |
T Consensus       353 ~~~~g~~~l~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-k----~  402 (495)
T KOG2533|consen  353 YAIIGAISLLAAAV-------------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-K----A  402 (495)
T ss_pred             HHHHHHHHHHhhcc-------------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH-H----h
Confidence            44 34344433211                         1112222222223333333344444444443332 1    3


Q ss_pred             ccchhhhhhHH-hHhHHHHHHHHHHhhcccchhhHHHHH
Q 008953          193 SSYFNAAYFAF-STGELVALTVLVWVQTHSGMDVGFGVS  230 (547)
Q Consensus       193 ~~~~~~~~~~~-~ig~~~~~~i~~~l~~~~g~~~~f~~~  230 (547)
                      -+..+.+..+. ..|.+.+++..+.....++|...|+..
T Consensus       403 ~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~  441 (495)
T KOG2533|consen  403 LTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML  441 (495)
T ss_pred             HHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence            34444444444 344455555555566667888888543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=0.00079  Score=71.09  Aligned_cols=103  Identities=7%  Similarity=0.046  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHH
Q 008953           79 VTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLA  158 (547)
Q Consensus        79 ~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (547)
                      ..+......+.+++++-+-|+. |.|..+.++...+...-+....                          .|...++.+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~--------------------------~N~y~~yfs  108 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF--------------------------PNSYYLYFS  108 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh--------------------------cchHHHHHH
Confidence            5666777888999999999996 9999999998887765555544                          345668888


Q ss_pred             HHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953          159 LYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL  214 (547)
Q Consensus       159 ~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~  214 (547)
                      -++.|+|.+..+.....++.+..+++.      +++-.++.......+.++|..+.
T Consensus       109 sallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  109 SALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             HHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence            999999999999999999999888776      77777777666676766665553

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.10  E-value=2.2e-05  Score=61.95  Aligned_cols=71  Identities=21%  Similarity=0.186  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      .+-...++...+...+.++++.|+.+ .|+|..+.|.+.++..+...++++++|+++||+ ||+|.++....+
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            34455666667777788999999985 999999999999999999999999999999997 988877766543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.09  E-value=0.00012  Score=75.23  Aligned_cols=164  Identities=16%  Similarity=0.141  Sum_probs=127.9

Q ss_pred             HHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008953           50 IMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQ  129 (547)
Q Consensus        50 ~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~  129 (547)
                      .+++++--..+=+|--+.+|++..|....+.....+..++-.+.|++..|-.+++++-.+++....+++.+..++...  
T Consensus       221 t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~--  298 (403)
T PF03209_consen  221 TLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL--  298 (403)
T ss_pred             HHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            334443346677888899999999999999999999999999999998865699999989999888888877776431  


Q ss_pred             CCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHH
Q 008953          130 LKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELV  209 (547)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  209 (547)
                                          .+.+.+..+.+++|++.|.+....-+...|...+++      -+..++.+..+..++..+
T Consensus       299 --------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Gl  352 (403)
T PF03209_consen  299 --------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGL  352 (403)
T ss_pred             --------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHH
Confidence                                345678889999999999998888888899988776      678888888888888888


Q ss_pred             HHHHHHHhhcc----------cchhhHHHHHHHHHHHHHHHH
Q 008953          210 ALTVLVWVQTH----------SGMDVGFGVSAAAMALGLFGV  241 (547)
Q Consensus       210 ~~~i~~~l~~~----------~g~~~~f~~~~~~~~~~l~~~  241 (547)
                      +-.++|.+.|-          .+|...|.+-++.+++++...
T Consensus       353 g~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  353 GTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            88887765432          235566666666555555444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.04  E-value=4.9e-05  Score=81.29  Aligned_cols=208  Identities=8%  Similarity=-0.121  Sum_probs=139.3

Q ss_pred             CCcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-cCCChh------h----HHHHHHHHHHHHHHHHhhhhHHhh
Q 008953           30 PNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINE-MHFSLS------N----SANIVTNFIGTVFLLALLGGYLSD   98 (547)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~~~~------~----~~~i~~~~~~~~~~~~~~~G~laD   98 (547)
                      +..+..|+.++.+++++++.=++.+.+..+.+.|+.++ +|-++.      +    ..+....+.+...+.+++--++.+
T Consensus       251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~  330 (477)
T TIGR01301       251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR  330 (477)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567789999999999999999999999999998754 443321      1    123334444455566677788898


Q ss_pred             cccch-HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccc-ccccchhHHHHHHHHHHHHhccccccchhhh
Q 008953           99 SFLGS-FWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCE-EAKGFKASIFFLALYLVAIGSGCVKPNMIAH  176 (547)
Q Consensus        99 r~~Gr-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~  176 (547)
                      |+ |+ |++..++.++..++.+...+..+.+.-.     -.+++++.. .+........++...+.|+..+.......++
T Consensus       331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal  404 (477)
T TIGR01301       331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNS-----RYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFAL  404 (477)
T ss_pred             Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhcc-----ccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHH
Confidence            86 95 6666788778777777776543211000     001111111 1111113445556667888888888888999


Q ss_pred             cccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccc--hhhHHHHHHHHHHHHHHHHHHcCce
Q 008953          177 GADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG--MDVGFGVSAAAMALGLFGVVSGTLY  247 (547)
Q Consensus       177 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g--~~~~f~~~~~~~~~~l~~~~~~~~~  247 (547)
                      +++..++++.+    .|..+|+++.++.+...+..+..|.+.+..|  -.+.+.+.++.++++.+..+...|+
T Consensus       405 ~s~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       405 ASIRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HHHHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            99998854311    6888999999999999999888887666555  4567778888877777666654443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.01  E-value=0.00011  Score=63.84  Aligned_cols=107  Identities=15%  Similarity=0.114  Sum_probs=81.6

Q ss_pred             cchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHH
Q 008953          388 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI  467 (547)
Q Consensus       388 ~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  467 (547)
                      ...++.++..++.+++.+    |.+       +++.+..+..+..++.+.....              .+.+.+.+..++
T Consensus         6 ~~~~~~~~~~~~~g~~~d----~~g-------~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~   60 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTD----RFG-------RKPVLLVGLFIFVLSTAMFALS--------------SNITVLIIARFL   60 (141)
T ss_pred             eehhHHHHHHhhHHHHHh----hcc-------hhHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHH
Confidence            334555666666666544    432       2244666767776666655543              255666777889


Q ss_pred             HHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          468 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  519 (547)
Q Consensus       468 ~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~  519 (547)
                      .+++.+...+....+..|..|++.|++..++.+....+|..+++.+.+.+.+
T Consensus        61 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  112 (141)
T TIGR00880        61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ  112 (141)
T ss_pred             HHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence            9999999999999999999999999999999999999999999999998765

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=6.8e-06  Score=83.31  Aligned_cols=171  Identities=13%  Similarity=0.084  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH--
Q 008953           40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG--  117 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~--  117 (547)
                      ++....-.+.+...-..-+-++.++.+.+..+..+.+++..-..+...++..+.|.++||+ +.-+.+.....+.++|  
T Consensus       273 ~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~  351 (464)
T KOG3764|consen  273 LLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVS  351 (464)
T ss_pred             hhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHH
Confidence            3333333344444444557788888888886666999999999999999999999999997 9444444333333333  


Q ss_pred             HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953          118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN  197 (547)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  197 (547)
                      .....++                         .++..+.+-+...+++.+...+..........+.++...-...++.++
T Consensus       352 ~~~iP~~-------------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVya  406 (464)
T KOG3764|consen  352 SGPIPFA-------------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYA  406 (464)
T ss_pred             hchhHhh-------------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHH
Confidence            3333333                         345557777777888888877777777777777655332224788888


Q ss_pred             hhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 008953          198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMAL  236 (547)
Q Consensus       198 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~  236 (547)
                      +...+..+|.++||.++|.+.+..|++|.-.+.+...++
T Consensus       407 Iad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i  445 (464)
T KOG3764|consen  407 IADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI  445 (464)
T ss_pred             HHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence            999999999999999999999999988876655554443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.95  E-value=1.7e-05  Score=83.22  Aligned_cols=173  Identities=12%  Similarity=-0.004  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 008953           43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLS  122 (547)
Q Consensus        43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~  122 (547)
                      +++.++..+..-.+.+++--|+ ++++-.+.--|.+...-..+-.+..++.++|-.|+ |+-+++..++..+.+=++..+
T Consensus       377 f~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S  454 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYS  454 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHH
Confidence            3344444444444555555555 45666666666666666777888889999999997 999999999999888877777


Q ss_pred             HhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhH
Q 008953          123 VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA  202 (547)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  202 (547)
                      ..                         .|+|+.+..-+++|+-.+.++..+.+++.+..|++-      |.++.++....
T Consensus       455 ~L-------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~  503 (618)
T KOG3762|consen  455 YL-------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGI  503 (618)
T ss_pred             Hh-------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHH
Confidence            76                         566778888899999999999999999999999887      77888886665


Q ss_pred             H-hHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCcee
Q 008953          203 F-STGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY  248 (547)
Q Consensus       203 ~-~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~  248 (547)
                      . .+|-.+|.+++|.+.+.+|-+..|.++++..++.++.+.......
T Consensus       504 f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l  550 (618)
T KOG3762|consen  504 FHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL  550 (618)
T ss_pred             hcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4 788899999999999999999999988887777776666554433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.94  E-value=0.025  Score=58.91  Aligned_cols=63  Identities=19%  Similarity=0.095  Sum_probs=52.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          457 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  519 (547)
Q Consensus       457 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~  519 (547)
                      +.|.+++..+..|+..|...+.....+.|..|+++|..++|......++|-.++..+.-++.+
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            566666677788888888888888888999999999999999999999998888887765544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.91  E-value=0.00018  Score=78.14  Aligned_cols=147  Identities=12%  Similarity=0.014  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhhHHHHHHHhhh--hcCCCh------hhHHHHHHHHHHHHHHHHhhh----hHHhhcccchHHHHHHHHHH
Q 008953           46 QAFEIMAIAAVGNNLITYVIN--EMHFSL------SNSANIVTNFIGTVFLLALLG----GYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        46 ~~~~~~~~~~~~~~l~~yl~~--~lg~~~------~~~~~i~~~~~~~~~~~~~~~----G~laDr~~Gr~~~~~~~~~~  113 (547)
                      .+.....+|.+....+.++..  ..+.+.      ...+++.+.-.+...+..++.    +++.||+ +..+.+.++.++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence            335555666666666666542  111111      113444444444444444444    6667775 777888899999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      .+++.+.++...+...                ....-+.+.+.+..+++++|..+..|...+++.+..|++.      |+
T Consensus       360 ~~l~f~~l~~~~~~~~----------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg  417 (500)
T PRK09584        360 CSGAFLVLPLGAKFAN----------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MG  417 (500)
T ss_pred             HHHHHHHHHHHHHhcC----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HH
Confidence            9999888877643111                0011234467788899999999999999999999999888      99


Q ss_pred             cchhhhhhHHhHhHHHHHHHHH
Q 008953          194 SYFNAAYFAFSTGELVALTVLV  215 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~  215 (547)
                      +.++.+..+..+|..++..+.+
T Consensus       418 ~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        418 FIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888777777777666654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.87  E-value=0.014  Score=62.33  Aligned_cols=166  Identities=8%  Similarity=0.039  Sum_probs=101.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCC-----ChhhHHHHHHHHHHHHHHH-HhhhhHHhhcccchHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHF-----SLSNSANIVTNFIGTVFLL-ALLGGYLSDSFLGSFWTMLI  109 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~-----~~~~~~~i~~~~~~~~~~~-~~~~G~laDr~~Gr~~~~~~  109 (547)
                      .++++...+..+|-.+.|+.+.+     +.+.+..     +.....++.+...+...+. .++-+++++|+ +|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            35667777777777777776553     4555555     3345666666555554444 78899999997 99999988


Q ss_pred             HHHHHHHHHHHHHHhhc-cCCCCCCCCCCCCCC--Cccc--------ccccchhHHHHHHHHHHHHhcccccc-chhhhc
Q 008953          110 FGFVELSGFILLSVQAH-LPQLKPPKCNMVTDS--ENCE--------EAKGFKASIFFLALYLVAIGSGCVKP-NMIAHG  177 (547)
Q Consensus       110 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~l~gig~g~~~~-~~~~~~  177 (547)
                      ....+.....+.++.-. .+....|+..  -+.  ...+        ..+.+....+++.   ..+-.....+ ..+++.
T Consensus        80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~--~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~---~elw~~~vvS~lFW~fa  154 (472)
T TIGR00769        80 VISPFLGFFALFAFVIYPLSDLLHPTAL--ADKLLSLLPPGFMGFIAILRIWSFALFYVM---AELWGSVVLSLLFWGFA  154 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcCCcHH--HHHHHhhcchhhHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            77777776666665521 0111001000  000  0000        0011222233332   2233333344 678999


Q ss_pred             ccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhh
Q 008953          178 ADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ  218 (547)
Q Consensus       178 ~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~  218 (547)
                      .|.+..++      -.|.++++..+.|+|..+++.+..++.
T Consensus       155 ndi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       155 NQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999887      567899999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.86  E-value=0.00013  Score=78.85  Aligned_cols=146  Identities=13%  Similarity=0.067  Sum_probs=97.4

Q ss_pred             HHHHHHhhHHHHHHHhhhhcCCChh----hHHHHHHHHHHHHHHHHhhhhHHhhcccchHH-------HHHHHHHHHHHH
Q 008953           49 EIMAIAAVGNNLITYVINEMHFSLS----NSANIVTNFIGTVFLLALLGGYLSDSFLGSFW-------TMLIFGFVELSG  117 (547)
Q Consensus        49 ~~~~~~~~~~~l~~yl~~~lg~~~~----~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~-------~~~~~~~~~~i~  117 (547)
                      ....+......++.|.++..+.+..    ...++.+...+...+..++.|++.||+ |+|+       .+.+|.++..++
T Consensus       281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~  359 (489)
T PRK10207        281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLG  359 (489)
T ss_pred             HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHH
Confidence            3344444446677777643332110    223444444455667788889999996 9987       366777776666


Q ss_pred             HHHHHHhhc-cCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          118 FILLSVQAH-LPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       118 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      .+.++.... ...                .....+.+.+....++.++|.++..|...+.+.+..|++.      ++.++
T Consensus       360 ~~~~~~~~~~~~~----------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~  417 (489)
T PRK10207        360 FLTAAAAGMWFAD----------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFIL  417 (489)
T ss_pred             HHHHHHHHHhhcC----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHH
Confidence            654432110 000                0011234556677888999999999999999999999887      88899


Q ss_pred             hhhhhHHhHhHHHHHHHHHHh
Q 008953          197 NAAYFAFSTGELVALTVLVWV  217 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l  217 (547)
                      ++++...++|..++..++...
T Consensus       418 g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        418 GMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998887655

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.84  E-value=0.0064  Score=61.72  Aligned_cols=158  Identities=13%  Similarity=0.105  Sum_probs=92.9

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhh-----cccchHHH
Q 008953           32 KHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSD-----SFLGSFWT  106 (547)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laD-----r~~Gr~~~  106 (547)
                      .|+..+++..+++....+..-+ ++...+| ++-+.-|.|-++.+....++.  =+..-+++..+.|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP-~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIP-LLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCch-hHhhhhH-HHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            5667788998988888876655 4545455 444456777766665544432  2345567777888     85 99997


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCc
Q 008953          107 MLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNP  186 (547)
Q Consensus       107 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~  186 (547)
                      -++- .-+.+|.++..++...+..+..            ....++........+++-+.++..--.+....-.+..+++ 
T Consensus       101 Wvvp-~q~llG~~mllLs~~v~~~~g~------------ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~-  166 (510)
T KOG3574|consen  101 WVVP-CQYLLGLFMLLLSYLVDRGLGG------------NGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN-  166 (510)
T ss_pred             eeee-hHHHHHHHHHHHhhCCCccccc------------CCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh-
Confidence            6543 2344566666666544332211            1122333333334455556666655566666667777666 


Q ss_pred             ccccccccchhhhhhHHhHhHHHHHHH
Q 008953          187 KQSKKLSSYFNAAYFAFSTGELVALTV  213 (547)
Q Consensus       187 ~~~~~r~~~~~~~~~~~~ig~~~~~~i  213 (547)
                           .+-+......+.+.|.+++..+
T Consensus       167 -----lgyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  167 -----LGYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             -----cCchhHHHHHHHhhhHHhhcce
Confidence                 5555555555666666666544

>TIGR00788 fbt folate/biopterin transporter

Probab=97.81  E-value=5.1e-05  Score=81.66  Aligned_cols=136  Identities=9%  Similarity=-0.177  Sum_probs=104.4

Q ss_pred             hhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcc
Q 008953           65 INEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENC  144 (547)
Q Consensus        65 ~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  144 (547)
                      ++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++..++.........-..+       +.|    
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~-------~~g----  347 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNL-------AFG----  347 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccc-------ccC----
Confidence            457999999999999999999999999999999996 99999999988888776554322110000       000    


Q ss_pred             cccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccc
Q 008953          145 EEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG  222 (547)
Q Consensus       145 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g  222 (547)
                       +   +....+...-++.+++.+........++.+..|++.      +++.++++....++|..+++.+++++.++.|
T Consensus       348 -i---~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       348 -I---SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             -C---CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             0   111123344556677777777777899999999988      8999999999999999999999999988877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.77  E-value=0.00039  Score=75.81  Aligned_cols=186  Identities=15%  Similarity=0.017  Sum_probs=102.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      ..+|.....+.+..+..++.+....+....+-+..|.+... .....+..+...++..++.++.||+ |||+.++.+...
T Consensus       291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            34455555555566665555444444334444556766443 5555666667778888889999997 999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      ..++.++++........            +...........+....+.......+..|..+.+..|.+|.+-      |+
T Consensus       369 m~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~  430 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALY------------YPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RS  430 (513)
T ss_pred             HHHHHHHHHHHHHHhcc------------CCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hh
Confidence            99988888876431110            0000001111122222222233333445566678899999887      77


Q ss_pred             cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008953          194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLF  239 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~  239 (547)
                      ++.++......+...+-......+.+..++...|........+..+
T Consensus       431 ~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~  476 (513)
T KOG0254|consen  431 KGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI  476 (513)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            7777654443333332222223333332233445544444444444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.74  E-value=0.078  Score=56.09  Aligned_cols=60  Identities=8%  Similarity=0.053  Sum_probs=45.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          455 TLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV  514 (547)
Q Consensus       455 ~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~  514 (547)
                      ..+...++.+.++--+|.=..--...-+..|.+|+++||...|+-+..+++--.+.-.++
T Consensus       353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666777777766666677777889999999999999999988887776655543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.60  E-value=7.2e-05  Score=77.55  Aligned_cols=150  Identities=13%  Similarity=0.160  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChh
Q 008953          342 VVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPL  421 (547)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~  421 (547)
                      .+.+++.+++-++--+.+++.+.......+..     .-..+.++..-.+..+++.|+.+.+.+    |+       .++
T Consensus        35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~-----~s~~Gll~~vf~v~~~i~sPl~gyLad----ry-------NR~   98 (493)
T KOG1330|consen   35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNIS-----DSELGLLQTVFIVVFMIASPLFGYLAD----RY-------NRK   98 (493)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCC-----chhccchhHHHHHHHHHHHHHHHHHHh----hc-------Ccc
Confidence            44455666666666565555333211111111     112244555556667888888887644    43       334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHH
Q 008953          422 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC  501 (547)
Q Consensus       422 ~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~  501 (547)
                      +.+.+|..+++++.+..++.+              +.|.+++.-.+.|+||....|...+++.+.+|.+.|++..+++++
T Consensus        99 ~v~~vG~~iW~~Av~~~~fs~--------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~  164 (493)
T KOG1330|consen   99 RVIAVGIFIWTLAVFASGFSN--------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYF  164 (493)
T ss_pred             eEEeeHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhh
Confidence            568999999999999888863              577778888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 008953          502 SYSFGFYLSSLLVSFVNKVT  521 (547)
Q Consensus       502 ~~~~G~~lg~~i~~~l~~~~  521 (547)
                      ...+|+.+|-.+...+.+.+
T Consensus       165 ~ipvGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  165 AIPVGSGLGYVVGSVVASLT  184 (493)
T ss_pred             hcccccceeEEeeeeeccCc
Confidence            99999888877666555543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.0001  Score=76.32  Aligned_cols=177  Identities=13%  Similarity=0.017  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHH--------HHHHHHHHHHH-HHhhhhHHhhcccchHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSAN--------IVTNFIGTVFL-LALLGGYLSDSFLGSFWTMLI  109 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~--------i~~~~~~~~~~-~~~~~G~laDr~~Gr~~~~~~  109 (547)
                      +...+..-|....++|+...+...-++ .+|+.+.+...        ...+....+.+ +..+...+.|+. |||++-+.
T Consensus       306 Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq~~  383 (538)
T KOG0252|consen  306 LLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHHHh
Confidence            334444445556677776655554444 35554443332        12222222222 556777889996 99999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953          110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS  189 (547)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~  189 (547)
                      +.++..+..+.++...+-                . +   .+...+...-+.+.++.-+.....-.+-+|.||.+.    
T Consensus       384 GF~~~~i~~~~~~~~y~~----------------~-~---~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv----  439 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQ----------------L-E---NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV----  439 (538)
T ss_pred             hHHHHHHHHHHHcCCccc----------------c-c---ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH----
Confidence            999988888777775430                0 0   111112222223445555555666677799999888    


Q ss_pred             cccccchhhhhhHHhHhHHHHHHHHHHhhc-----ccchhhHHHHHHHHHHHHHHHHHH
Q 008953          190 KKLSSYFNAAYFAFSTGELVALTVLVWVQT-----HSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       190 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~-----~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                        |+++.++.-.+.=+|++++.....++.+     ..|.+..+++.+.+++++.+..++
T Consensus       440 --R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l  496 (538)
T KOG0252|consen  440 --RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL  496 (538)
T ss_pred             --hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence              9999999988889999999999999998     788999999988888877766544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.46  E-value=0.0018  Score=72.27  Aligned_cols=177  Identities=14%  Similarity=0.123  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhhhhHHhhcccc--hHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIG-TVFLLALLGGYLSDSFLG--SFWTMLIFGFV  113 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~G--r~~~~~~~~~~  113 (547)
                      +.++...+..++....++++..++|.|+++.+|+++.+++++.+...+ +..++.+++|+++||+ +  .|+.+.++.+.
T Consensus       330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~  408 (633)
T TIGR00805       330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICL  408 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHH
Confidence            467788888899999999999999999999999999999999888766 5689999999999996 7  55677776666


Q ss_pred             HHHHHHHHHHhhcc------------C--C----CCCC-CCC--------------------------------CCCCCC
Q 008953          114 ELSGFILLSVQAHL------------P--Q----LKPP-KCN--------------------------------MVTDSE  142 (547)
Q Consensus       114 ~~i~~~l~~~~~~~------------~--~----~~~~-~~~--------------------------------~~~~~~  142 (547)
                      ..++.++......+            |  .    .... .|+                                ..+++.
T Consensus       409 ~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~  488 (633)
T TIGR00805       409 STLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSN  488 (633)
T ss_pred             HHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCc
Confidence            66654442210000            0  0    0001 221                                000000


Q ss_pred             --------------------cccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhH
Q 008953          143 --------------------NCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA  202 (547)
Q Consensus       143 --------------------~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  202 (547)
                                          .|+.+=......+++..++..+..+........++-+..|+++      |.-+.++..+.
T Consensus       489 ~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~  562 (633)
T TIGR00805       489 MVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLC  562 (633)
T ss_pred             ceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHH
Confidence                                1211111113334444444444444444444566788899888      89999997776


Q ss_pred             H-hHhHHHHHHHHHHhhcc
Q 008953          203 F-STGELVALTVLVWVQTH  220 (547)
Q Consensus       203 ~-~ig~~~~~~i~~~l~~~  220 (547)
                      . -+|.+-+|++.|++.|.
T Consensus       563 ~rllg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       563 MRVFATIPAPILFGLLIDV  581 (633)
T ss_pred             HHHhcCCChhHHHhhhhhc
Confidence            6 56888899999988876

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.30  E-value=0.0068  Score=64.24  Aligned_cols=84  Identities=10%  Similarity=0.083  Sum_probs=75.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH
Q 008953          419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM  498 (547)
Q Consensus       419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~  498 (547)
                      +.++.+.++.+..++..++.++.              .+...+.+.-+++|++|+... ....++++-+|+++|++++|.
T Consensus        90 G~K~vL~l~~l~Wsl~t~L~~fa--------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi  154 (511)
T TIGR00806        90 RYKPVLVLQALSFVCVWLLLLLG--------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAY  154 (511)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHH
Confidence            34466888989998888888875              367888899999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 008953          499 TYCSYSFGFYLSSLLVSFV  517 (547)
Q Consensus       499 ~~~~~~~G~~lg~~i~~~l  517 (547)
                      .+....+|.++++.+.+++
T Consensus       155 ~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       155 SRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999983

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.19  E-value=0.0038  Score=68.30  Aligned_cols=152  Identities=11%  Similarity=-0.053  Sum_probs=107.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChh---hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHH-H
Q 008953           34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLS---NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTML-I  109 (547)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~---~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~  109 (547)
                      +.+|.+.+.+++.++..+.+|.+..+.|......++-++.   +.++....+.++..++.++.|++.-++ +|-|..+ +
T Consensus       307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~  385 (599)
T PF06609_consen  307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF  385 (599)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence            3357888888889999999999988888888777766653   567788888888888999999999885 8766654 5


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953          110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS  189 (547)
Q Consensus       110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~  189 (547)
                      +.++.+++...++....                       ++....+...++.|+|.|...........-..|++.    
T Consensus       386 ~~~~~ta~~Gama~~~~-----------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~----  438 (599)
T PF06609_consen  386 GSVLMTAFCGAMAAVRP-----------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED----  438 (599)
T ss_pred             HHHHHHHHHHHHHHccC-----------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH----
Confidence            55555555555444321                       222233455667788888776666565555567666    


Q ss_pred             cccccchhhhhhHHhHhHHHHHHHHH
Q 008953          190 KKLSSYFNAAYFAFSTGELVALTVLV  215 (547)
Q Consensus       190 ~~r~~~~~~~~~~~~ig~~~~~~i~~  215 (547)
                        .+.+.++....-.+|+.+|..+..
T Consensus       439 --ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  439 --IGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             --HHHHHHHHHHHHHHhhHHHHHHHH
Confidence              788888877777888888777644

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.19  E-value=0.0055  Score=63.71  Aligned_cols=186  Identities=13%  Similarity=0.014  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.+++++++..+....+|++...+-.-+ ..-|++...+|.+.....++..++.+++|.++||.-.-|+++++......+
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v  344 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV  344 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            5577777777777777776655443222 346788888999999999999999999999999973334455555555555


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCC-CCCCcccccccccc
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQF-DQSNPKQSKKLSSY  195 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~  195 (547)
                      +...+...+..+                     .....++..-.+.|++..+..|.---+..|.. |..+       +..
T Consensus       345 ~~~~l~~~t~~~---------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tS  396 (480)
T KOG2563|consen  345 GTLMLLTCTLFL---------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTS  396 (480)
T ss_pred             HHHHHHHhhccC---------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------ccc
Confidence            532222222111                     12233445555677777777787777777764 5443       444


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccc----hhhHHHHHHHHHHHHHHHHHHcCceeecc
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSG----MDVGFGVSAAAMALGLFGVVSGTLYYRNK  251 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g----~~~~f~~~~~~~~~~l~~~~~~~~~~~~~  251 (547)
                      .|+.+...++-+.+=.++.+...+..+    |...-+......++.+++..+.++.+++.
T Consensus       397 sGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~  456 (480)
T KOG2563|consen  397 SGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL  456 (480)
T ss_pred             ceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence            666666666666655566677666555    33333333445555666666666665544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.19  E-value=0.0073  Score=54.52  Aligned_cols=111  Identities=10%  Similarity=0.079  Sum_probs=82.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccc
Q 008953           71 SLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGF  150 (547)
Q Consensus        71 ~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (547)
                      ++..--.-.++......+..++++.+.+++ |.|++++++.+.+.+-......                          +
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~--------------------------~   87 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY--------------------------P   87 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh--------------------------h
Confidence            333333445556666778888889999985 9999999998887765444332                          3


Q ss_pred             hhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953          151 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL  214 (547)
Q Consensus       151 ~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~  214 (547)
                      +...++.+-++.|++.+..+.....++.+..+++.      |++..+++....+.+.++|..+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence            45668888889999999999999999998877665      77777777666677766666553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.09  E-value=0.0055  Score=66.02  Aligned_cols=85  Identities=7%  Similarity=0.022  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchh--hHHHHHHHH
Q 008953          422 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG--MQAFLTAMT  499 (547)
Q Consensus       422 ~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~--~rg~~~g~~  499 (547)
                      +.+.+|.++.+++.++.+..+             .+...+.+...+..+|.++..+...++..|.+|++  .|+++.+++
T Consensus        77 r~iliG~il~~lg~lll~~~~-------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~  143 (493)
T PRK15462         77 MAVMLGALLMAIGHVVLGASE-------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLM  143 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHH
Confidence            557888888888877655321             11122334445556677777777788999999976  799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 008953          500 YCSYSFGFYLSSLLVSFVNK  519 (547)
Q Consensus       500 ~~~~~~G~~lg~~i~~~l~~  519 (547)
                      +...++|+.++|.+.+++.+
T Consensus       144 Y~~~nlG~~iap~l~g~L~~  163 (493)
T PRK15462        144 YAAGNVGSIIAPIACGYAQE  163 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99988999999999998854

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.88  E-value=0.0087  Score=60.95  Aligned_cols=152  Identities=12%  Similarity=0.105  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHh-hhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccch-HHHHHHHHHHHH
Q 008953           38 AAVFVLGLQAFEIMAIAAVGNNLITYV-INEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS-FWTMLIFGFVEL  115 (547)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-~~~~~~~~~~~~  115 (547)
                      ..++.+....+.....|....+...++ .+.+|+++.|.|-+.+.-.+.+.+.+..-....||..|. +..+..++....
T Consensus       261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v  340 (451)
T KOG2615|consen  261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV  340 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence            344444444444444444444444555 456999999999998888888888888888888887443 334444444444


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      -..++...+.                         ....++++..+..+..+...+....++....|+++      ||..
T Consensus       341 P~~llls~~~-------------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~  389 (451)
T KOG2615|consen  341 PAFLLLSLAR-------------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTL  389 (451)
T ss_pred             HHHHHHhccc-------------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHH
Confidence            4444544442                         23447777778888888888888899999999888      9999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcc
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTH  220 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~  220 (547)
                      .|+......++=++||.++|.+..+
T Consensus       390 ~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  390 NGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHHHHHHHHHHHHhhhhhhheeEEE
Confidence            9999999999999999999887654

>PRK03612 spermidine synthase; Provisional

Probab=96.87  E-value=0.055  Score=58.93  Aligned_cols=176  Identities=13%  Similarity=0.043  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHH-HHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTML-IFGFVEL  115 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~  115 (547)
                      +.+..+.++..+..+.+=   ....-.+...+|-+....+.+.+++.++..++..++|+++++. -|+...+ +.+.+..
T Consensus        17 ~~l~~~~f~sg~~~L~yE---v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~   92 (521)
T PRK03612         17 ALLLAAVFVCAACGLVYE---LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLG   92 (521)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHH
Confidence            444444444434434333   3344445556888889999999999999999999999887553 3332222 1111111


Q ss_pred             -HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953          116 -SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS  194 (547)
Q Consensus       116 -i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  194 (547)
                       +...++.....+.                    ......++...++.++..|+..|....+..+... ++      -++
T Consensus        93 ~~~~~ll~~~~~~~--------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~  145 (521)
T PRK03612         93 GLSALILYAAFAFQ--------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGH  145 (521)
T ss_pred             HHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhh
Confidence             1111111111000                    0011112223334566666666665554443222 11      244


Q ss_pred             chhhhhhHHhHhHHHHHHHHHHhhc-ccch-hhHHHHHHHHHHHHHHHHHH
Q 008953          195 YFNAAYFAFSTGELVALTVLVWVQT-HSGM-DVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       195 ~~~~~~~~~~ig~~~~~~i~~~l~~-~~g~-~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ..+..|....+|+++|.++.+++.- ..|- +..+.+..+-.+++++.++.
T Consensus       146 ~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~  196 (521)
T PRK03612        146 NVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL  196 (521)
T ss_pred             hhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            5677788888899999999886644 6774 44444444344444444443

>PTZ00207 hypothetical protein; Provisional

Probab=96.80  E-value=0.0061  Score=66.93  Aligned_cols=174  Identities=9%  Similarity=0.012  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc-CCCh-hhHHH-HHHHHHHHHHHHHhhhhHHhhcccchHH--------
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEM-HFSL-SNSAN-IVTNFIGTVFLLALLGGYLSDSFLGSFW--------  105 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-g~~~-~~~~~-i~~~~~~~~~~~~~~~G~laDr~~Gr~~--------  105 (547)
                      ..+|++.+..+|..-+...+..++- ++.+.+ |.+. .+... .++...+..+++++.+|.++. +.-||+        
T Consensus       353 ~d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~-~~~~~~~~~r~prt  430 (591)
T PTZ00207        353 ARLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEI-WSQKRRAEDRVPIT  430 (591)
T ss_pred             hhHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHH-HHHhhccccccchh
Confidence            4478888888887777666666554 444557 6633 32222 789999999999999999983 324443        


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCC
Q 008953          106 -TMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQS  184 (547)
Q Consensus       106 -~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~  184 (547)
                       .+.+..+ ..++++++++.  +|                       ...++++-++.|++.|...+...+...|.|- +
T Consensus       431 ~~l~~~~~-~~~~~lll~~~--~p-----------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k  483 (591)
T PTZ00207        431 IALFIPSV-CIITMLTLFLT--LP-----------------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-K  483 (591)
T ss_pred             HHHHHHHH-HHHHHHHHHHH--CC-----------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-c
Confidence             2223333 55666666664  22                       1358889999999999999999999999999 7


Q ss_pred             CcccccccccchhhhhhHHhHhHHHH-HHHHHHhhcc----------cc---hhhHHHHHHHHHHHHHHHHHHcC
Q 008953          185 NPKQSKKLSSYFNAAYFAFSTGELVA-LTVLVWVQTH----------SG---MDVGFGVSAAAMALGLFGVVSGT  245 (547)
Q Consensus       185 ~~~~~~~r~~~~~~~~~~~~ig~~~~-~~i~~~l~~~----------~g---~~~~f~~~~~~~~~~l~~~~~~~  245 (547)
                      +      -++-++....+.-+|+.+= -.+.|.+.++          .|   ++.+|++.++..+++.+.-...+
T Consensus       484 ~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        484 D------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             c------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence            7      5666666666666666542 3344554322          12   66788887777777666544443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.61  E-value=0.023  Score=45.36  Aligned_cols=66  Identities=12%  Similarity=0.026  Sum_probs=59.1

Q ss_pred             HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q 008953           60 LITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAH  126 (547)
Q Consensus        60 l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~  126 (547)
                      +.+.+.++.++|.++++++-+.-.+++.++.+...++.++. .+++.+..+++...+..+.+++..+
T Consensus        14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45577788999999999999999999999999999999985 8899999999999999999888643

Note that many members are hypothetical proteins.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.60  E-value=0.0094  Score=63.68  Aligned_cols=152  Identities=14%  Similarity=0.102  Sum_probs=114.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHH-HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhh-HHhhcccchHHHHHHHH
Q 008953           34 GGMKAAVFVLGLQAFEIMAIAAVGN-NLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGG-YLSDSFLGSFWTMLIFG  111 (547)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G-~laDr~~Gr~~~~~~~~  111 (547)
                      ++.|..+.+++..+.....-.+-.. .++.|+...+++++.+.+...+.......++.++.. .+.-. +|-|+.+..|+
T Consensus       237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl  315 (463)
T KOG2816|consen  237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGL  315 (463)
T ss_pred             CCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHH
Confidence            3445555555555544333322111 346788889999999999999999999999998888 55555 69999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953          112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK  191 (547)
Q Consensus       112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~  191 (547)
                      +...+...+.+++..                         .++++....+. ...+...|...++...+.++++      
T Consensus       316 ~~~~~~~~~~af~~~-------------------------~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e------  363 (463)
T KOG2816|consen  316 LSEFLQLLLFAFATE-------------------------TWMMFAAGVVV-ALAGIVFPAIRAFASILVSPEE------  363 (463)
T ss_pred             HHHHHHHHHHHHhcc-------------------------chhhhHHHHHH-HhhcchhHHHHhHHHhhccccc------
Confidence            999999999999843                         34455555444 4456677888999999999888      


Q ss_pred             cccchhhhhhHHhHhHHHHHHHHHHhh
Q 008953          192 LSSYFNAAYFAFSTGELVALTVLVWVQ  218 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i~~~l~  218 (547)
                      +++.+++....-.+.+.++|.+-+.+.
T Consensus       364 ~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  364 QGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             ccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            899999999999999999988877653

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.54  E-value=0.47  Score=53.15  Aligned_cols=313  Identities=8%  Similarity=-0.068  Sum_probs=180.4

Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccc
Q 008953           68 MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEA  147 (547)
Q Consensus        68 lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (547)
                      .+...........++.....+..+.....+|-.-++-......++...+..+...+.+- +.                ..
T Consensus        15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a----------------~~   77 (654)
T TIGR00926        15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GA----------------IP   77 (654)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cc----------------Cc
Confidence            34444556777888888899999999999998766666777766667776666665421 11                01


Q ss_pred             ccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhh--
Q 008953          148 KGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDV--  225 (547)
Q Consensus       148 ~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~--  225 (547)
                      .........+..+.+.++.++..+..+.+.+++.+..++++   +.+..+.+++..+.+.+ |.+++..+.....-+.  
T Consensus        78 ~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~  153 (654)
T TIGR00926        78 SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGC  153 (654)
T ss_pred             ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Confidence            11112334456666788899999999999999999876432   66788889888887766 4566666665443221  


Q ss_pred             -----HHH-HHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccc
Q 008953          226 -----GFG-VSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVF  299 (547)
Q Consensus       226 -----~f~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (547)
                           .|. ..++.+++.++.++.....++..++++.+.....++........+.+                        
T Consensus       154 fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~------------------------  209 (654)
T TIGR00926       154 FGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR------------------------  209 (654)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh------------------------
Confidence                 133 45556666666777665555555444332222233322222111100                        


Q ss_pred             cccchhHhhhhhhccccCCCCCCCCCccc--cchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCc
Q 008953          300 LTQRFRFLDKACIKVEDGTNKKESPWRLC--TVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN  377 (547)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  377 (547)
                                  ..  .........|..+  .....++.+...+.+.++...+.+++.+.+.......+...++...+ .
T Consensus       210 ------------~~--~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~  274 (654)
T TIGR00926       210 ------------FS--TRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-D  274 (654)
T ss_pred             ------------hc--cCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-c
Confidence                        00  0000000112111  12223456677778888888888888877765555555445555432 2


Q ss_pred             ceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008953          378 FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEK  443 (547)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~  443 (547)
                      ++..+.....++.+-.++..++...+..++.+++.++   ..+.+.+.-+.+.+.++.+.++....
T Consensus       275 l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~  337 (654)
T TIGR00926       275 VGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAAL  337 (654)
T ss_pred             cCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            2222223446666667777777766666777776433   23455566666666666666555543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.44  E-value=0.012  Score=62.45  Aligned_cols=199  Identities=9%  Similarity=0.009  Sum_probs=119.7

Q ss_pred             CCcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHH--HhhhhHHhhcccch---H
Q 008953           30 PNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLL--ALLGGYLSDSFLGS---F  104 (547)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~--~~~~G~laDr~~Gr---~  104 (547)
                      +..+..++..+.++++.+..++.+..+-...+......++.+.+++....+.......+.  .+......-|. |+   |
T Consensus       255 ~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r  333 (488)
T KOG2325|consen  255 KKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKR  333 (488)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccc
Confidence            333455677777788888888888877777777777778888888777766664443322  23333333342 43   4


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCCCCC-CCCCCCC---------cccccccchhHHHHHHHH-HHHHhccccccch
Q 008953          105 WTMLIFGFVELSGFILLSVQAHLPQLKPPKC-NMVTDSE---------NCEEAKGFKASIFFLALY-LVAIGSGCVKPNM  173 (547)
Q Consensus       105 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~-l~gig~g~~~~~~  173 (547)
                      +.+..+.+.......+..    .|.-.-+.. +.+++.+         -|....-.+...+++... +.|++.-......
T Consensus       334 ~~~~~g~l~~f~~~~i~~----yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~  409 (488)
T KOG2325|consen  334 RIILLGFLIFFLSYYIFT----YPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTAL  409 (488)
T ss_pred             eeeeehHHHHHHhhheee----eeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchH
Confidence            444444333222221111    121111000 1222221         133333344444444433 3566666666677


Q ss_pred             hhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008953          174 IAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLF  239 (547)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~  239 (547)
                      .++..++..+.+      ++...+.+.....++..+||++...+....|.++.+.+.++..++...
T Consensus       410 ~tlySkiLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~  469 (488)
T KOG2325|consen  410 DTLYSKILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA  469 (488)
T ss_pred             HHHHHHHhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence            888999998887      788889999999999999999999998888988777766554444433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.41  E-value=0.063  Score=59.73  Aligned_cols=178  Identities=14%  Similarity=0.088  Sum_probs=113.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhhhhHHhhcc-cchHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIG-TVFLLALLGGYLSDSF-LGSFWTMLIFGFVE  114 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~  114 (547)
                      +...+.++...++...+-+..+++|-|+.+.++.+.+.+..+.+...+ +.+++.+++|++.-|+ +..|.+..+.++..
T Consensus       392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~  471 (735)
T KOG3626|consen  392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS  471 (735)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence            335677788889999999999999999999999999999999977655 5678889999999987 34555555544443


Q ss_pred             HHHHHH---HHHhh--ccCC------------CCCCC-----CC--------------------------------CCCC
Q 008953          115 LSGFIL---LSVQA--HLPQ------------LKPPK-----CN--------------------------------MVTD  140 (547)
Q Consensus       115 ~i~~~l---~~~~~--~~~~------------~~~~~-----~~--------------------------------~~~~  140 (547)
                      .+..+.   ..+..  +.+.            ...+.     |+                                ..++
T Consensus       472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~  551 (735)
T KOG3626|consen  472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS  551 (735)
T ss_pred             HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence            333322   11110  0000            00011     21                                1111


Q ss_pred             --CC---c------------------ccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953          141 --SE---N------------------CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN  197 (547)
Q Consensus       141 --~~---~------------------~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  197 (547)
                        +.   +                  |+.+.......+++..++..+..+........++-+..++++      |.-++|
T Consensus       552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG  625 (735)
T KOG3626|consen  552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALG  625 (735)
T ss_pred             CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhH
Confidence              11   1                  222223334444444444444444444455566788888888      899999


Q ss_pred             hhhhHH-hHhHHHHHHHHHHhhcc
Q 008953          198 AAYFAF-STGELVALTVLVWVQTH  220 (547)
Q Consensus       198 ~~~~~~-~ig~~~~~~i~~~l~~~  220 (547)
                      +..+.. -+|.+-+|++.|++.|.
T Consensus       626 ~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  626 FQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHHHHHHHhcCCchHhhhhhHhh
Confidence            977766 56888899999998654

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.13  E-value=1.4  Score=46.89  Aligned_cols=63  Identities=10%  Similarity=0.085  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008953          459 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT  521 (547)
Q Consensus       459 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~  521 (547)
                      ..++..+++..+..-..+++..++-++++.+..-|+.|.+.|+..++|+-.-..++-++.+..
T Consensus       406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            344557778888888888999999999999999999999999999999999998888877753

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.03  E-value=0.0017  Score=70.97  Aligned_cols=177  Identities=15%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhhhhHHhhcc-cchHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIG-TVFLLALLGGYLSDSF-LGSFWTMLIFGFVELS  116 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~~i  116 (547)
                      +.+..+...++.+..-++..++|-|+.++++.++++++.+.+...+ +..++.+++|++..|+ ++.|+.+....+...+
T Consensus       307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v  386 (539)
T PF03137_consen  307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV  386 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence            5666677778888888999999999999999999999999887766 6778999999999997 3345555554444333


Q ss_pred             HHHH---HHHh--hccCC--CCC---------------CCCCCCC-------CCCcccccccchhHHHHHHHHHHHHhcc
Q 008953          117 GFIL---LSVQ--AHLPQ--LKP---------------PKCNMVT-------DSENCEEAKGFKASIFFLALYLVAIGSG  167 (547)
Q Consensus       117 ~~~l---~~~~--~~~~~--~~~---------------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~gig~g  167 (547)
                      ..++   ..+.  .+.+.  +-.               ..|+...       ....|+.+-......+++..++..+..+
T Consensus       387 ~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~  466 (539)
T PF03137_consen  387 SVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTF  466 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHH
Confidence            3322   1111  00000  000               1111100       0012333312344455555555444444


Q ss_pred             ccccchhhhcccCCCCCCcccccccccchhhhhhHH-hHhHHHHHHHHHHhhccc
Q 008953          168 CVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAF-STGELVALTVLVWVQTHS  221 (547)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~ig~~~~~~i~~~l~~~~  221 (547)
                      ........+.-+..|+++      |.-+.|+..... -+|.+=||++.|.+.|..
T Consensus       467 ~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  467 MSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -------------------------------------------------------
T ss_pred             hcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            444444455668888888      888999877665 568888999999888763

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=95.96  E-value=0.15  Score=55.50  Aligned_cols=144  Identities=10%  Similarity=0.057  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953           39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF  118 (547)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~  118 (547)
                      ...+.+..+.....+|++     .+....+|.+..-.......   .........+.+-|+. |||.....+.++..++.
T Consensus       324 ~~~~~~~~~~~~~~y~gl-----~~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~  394 (521)
T KOG0255|consen  324 TLYLLFIWFVFSLVYYGL-----SLNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGL  394 (521)
T ss_pred             HHHHHHHHHHHhHHHHhh-----hhhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            333334333344444443     33334455555433333333   4445556668999996 99999999999988888


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953          119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA  198 (547)
Q Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  198 (547)
                      +..+....-                      .......+...+...+.+..........+|.+|+..      |..+.+.
T Consensus       395 ~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~~~~~  446 (521)
T KOG0255|consen  395 LLFGWLPDD----------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNTAVGA  446 (521)
T ss_pred             HHHHHhhcc----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHH
Confidence            888876320                      110111122222222233333344777899999888      8999999


Q ss_pred             hhhHHhHhHHHHHHHHHHhhc
Q 008953          199 AYFAFSTGELVALTVLVWVQT  219 (547)
Q Consensus       199 ~~~~~~ig~~~~~~i~~~l~~  219 (547)
                      ......+|.+++|.+.-....
T Consensus       447 ~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  447 ISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999988544433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.91  E-value=0.3  Score=44.09  Aligned_cols=86  Identities=10%  Similarity=0.149  Sum_probs=68.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH
Q 008953          419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM  498 (547)
Q Consensus       419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~  498 (547)
                      ++++.+.+|.++.++-.+....               .+.+.+++.-++.|+|.++.+++...+.++..+++.|++-.++
T Consensus        65 g~K~sm~lg~~~y~~y~~~~~~---------------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~i  129 (156)
T PF05978_consen   65 GPKWSMILGSLGYAIYIASFFY---------------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGI  129 (156)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHH
Confidence            4456677776666543333322               3567888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 008953          499 TYCSYSFGFYLSSLLVSFVNK  519 (547)
Q Consensus       499 ~~~~~~~G~~lg~~i~~~l~~  519 (547)
                      +......+..+|..+.-.+..
T Consensus       130 fw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  130 FWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999998888887766655

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.12  E-value=0.17  Score=53.03  Aligned_cols=162  Identities=15%  Similarity=0.017  Sum_probs=111.7

Q ss_pred             HHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCC
Q 008953          339 LISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGI  418 (547)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~  418 (547)
                      ++....+.+..-.+|+...+..+.+.++ ...+..       -.+.++.+.++..++..|+.+...|+-..|++||++  
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk-------~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP--  103 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQS-LGVPHK-------WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP--  103 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcc-------cccccccccccccceecccccccccccccccccccc--
Confidence            3444444455555666655555544332 222222       235567788888999999999999988888887753  


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC----CCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHH
Q 008953          419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDS----GKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAF  494 (547)
Q Consensus       419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~  494 (547)
                          -+.++.++.++++.+.++.....+ ...|+    ...-.+...++.+.+.-++....+.+.=++..+....+.+.+
T Consensus       104 ----fI~~~s~~i~~~l~Lig~aaDig~-~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~  178 (498)
T KOG0637|consen  104 ----FILAGSLLIAVSLFLIGYAADIGL-LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT  178 (498)
T ss_pred             ----hHHHhhHHHHHHHhhhhhHhhhhH-HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh
Confidence                367778888888887776532211 11111    223455566778889999998999888999999888888888


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHH
Q 008953          495 -LTAMTYCSYSFGFYLSSLLVS  515 (547)
Q Consensus       495 -~~g~~~~~~~~G~~lg~~i~~  515 (547)
                       +.+.+.+.-.+||.+|-++.+
T Consensus       179 ~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  179 RANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             ccchhHHHHHHhcceeeeeccc
Confidence             999999999999998877654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.00  E-value=0.31  Score=50.93  Aligned_cols=145  Identities=12%  Similarity=-0.006  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHH
Q 008953           41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFIL  120 (547)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l  120 (547)
                      -+..+.++|.+...++..-+.  ......-...+--+...+|.++..+++--.     .++.-|++.+.+.+-..-..++
T Consensus       251 PL~lVY~aEY~InqGv~~tl~--fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~-----~~~rir~lwils~LQ~~nl~~~  323 (402)
T PF02487_consen  251 PLFLVYFAEYFINQGVAPTLL--FPNSFFSPRDQYRWYQLLYQLGVFISRSSL-----PFFRIRRLWILSLLQVINLVFL  323 (402)
T ss_pred             HHHHHHHHHHHHHhchHHHhc--CCccCCCHHHHHHHHHHHHHHHHhhhhcce-----eeeehhhHHHHHHHHHHHHHHH
Confidence            355566666555555443221  112222223445566667777766665432     2233355544444332222222


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhh
Q 008953          121 LSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY  200 (547)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  200 (547)
                      ...+ .+..                   .++.+.+++..+..|+..|..+.+....+.|..|+++      |+-.++...
T Consensus       324 ~l~s-~~~f-------------------ipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vs  377 (402)
T PF02487_consen  324 LLQS-WYRF-------------------IPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVS  377 (402)
T ss_pred             HHHH-HHHH-------------------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHH
Confidence            1111 1111                   1345666666677899999999999999999888777      899999988


Q ss_pred             hHHhHhHHHHHHHHHHhh
Q 008953          201 FAFSTGELVALTVLVWVQ  218 (547)
Q Consensus       201 ~~~~ig~~~~~~i~~~l~  218 (547)
                      ++-++|..++..++-++.
T Consensus       378 vsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  378 VSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHhhHHHHHHHHHHHHHH
Confidence            888888888877765543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.72  E-value=1.3  Score=46.89  Aligned_cols=149  Identities=13%  Similarity=0.022  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHH
Q 008953           42 VLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILL  121 (547)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~  121 (547)
                      ..+...+-.++.-+.-..++.|+... |+++...+..=+...+....+.++..++-+|+ |..|+=.+++..-.....++
T Consensus       263 as~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~  340 (432)
T PF06963_consen  263 ASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALC  340 (432)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHH
Confidence            33333344444445556788899875 99999999999999999999999999999997 99999888888776666666


Q ss_pred             HHhhccCCCCCCCCCCCCCCCccccc-ccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhh
Q 008953          122 SVQAHLPQLKPPKCNMVTDSENCEEA-KGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY  200 (547)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  200 (547)
                      ..+-..+.-                + +......++.+.++-=+|.=++--...-++-|..|+++      |+...+..+
T Consensus       341 v~~~~~~~~----------------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~  398 (432)
T PF06963_consen  341 VVSFWAPGS----------------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQN  398 (432)
T ss_pred             HHHHhcCCC----------------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHH
Confidence            554332220                0 11233334433333334444555566677788888877      899999888


Q ss_pred             hHHhHhHHHHHHHH
Q 008953          201 FAFSTGELVALTVL  214 (547)
Q Consensus       201 ~~~~ig~~~~~~i~  214 (547)
                      ...++...+...++
T Consensus       399 sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  399 SLQSLFELLSFVLT  412 (432)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888887776663

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=93.58  E-value=3.4  Score=44.61  Aligned_cols=169  Identities=10%  Similarity=0.074  Sum_probs=94.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCC---ChhhHHHHHHHHHH-HHHHHHhhhhHHhhcccchHHHHHHH
Q 008953           35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHF---SLSNSANIVTNFIG-TVFLLALLGGYLSDSFLGSFWTMLIF  110 (547)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~  110 (547)
                      -+++++.+.++.++-.+.|..+..     +.+.+=.   +++....+-....+ ...+..++-.+++|++ +|.+++.+.
T Consensus        22 E~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~   95 (491)
T PF03219_consen   22 ELKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYII   95 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence            356777777777777666543332     2222211   33334444443333 4556677889999997 999999887


Q ss_pred             HHHHHHHHHHHHHhhccCC--CCCCCCCCCCCCC----cc----cccccchhHHHHHHHHHHHHhcccccc-chhhhccc
Q 008953          111 GFVELSGFILLSVQAHLPQ--LKPPKCNMVTDSE----NC----EEAKGFKASIFFLALYLVAIGSGCVKP-NMIAHGAD  179 (547)
Q Consensus       111 ~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~l~gig~g~~~~-~~~~~~~~  179 (547)
                      ...+...+.+.++.- +|.  .+.|+..--..+.    +.    ..-+.+....+++.-=+.   .....+ ..+.+..|
T Consensus        96 ~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElw---gsvvlSlLFW~fAN~  171 (491)
T PF03219_consen   96 IIPFLGFFALFAFVL-YPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELW---GSVVLSLLFWGFANE  171 (491)
T ss_pred             HHHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence            777776666666542 121  1111110000000    00    011122222333322222   222222 45788899


Q ss_pred             CCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhc
Q 008953          180 QFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT  219 (547)
Q Consensus       180 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~  219 (547)
                      .++.++      -.+.++.+..+.|+|.+++..+..++.+
T Consensus       172 itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  172 ITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             cCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998777      5568999999999999999888888777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.57  E-value=1.6  Score=46.41  Aligned_cols=135  Identities=17%  Similarity=0.126  Sum_probs=83.9

Q ss_pred             hcCCChhhHHHHH-HHHHHHHHHHHhhhhHHhhcc--cchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 008953           67 EMHFSLSNSANIV-TNFIGTVFLLALLGGYLSDSF--LGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSEN  143 (547)
Q Consensus        67 ~lg~~~~~~~~i~-~~~~~~~~~~~~~~G~laDr~--~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  143 (547)
                      ..+.+....-.+. .....+..++.++.+.+++|.  +||++++.++.++..++.++.-+..  |.-.+     ...+.+
T Consensus       272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~dap-----~~~t~~  344 (461)
T KOG3098|consen  272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDAP-----LRPTDS  344 (461)
T ss_pred             hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccCC-----CCCCcc
Confidence            3444444332222 222334445556666665443  4899999999999888887777653  22110     011112


Q ss_pred             ccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHH
Q 008953          144 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLV  215 (547)
Q Consensus       144 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~  215 (547)
                      .+...+++.....+.-++.|++-+........++++.+|++       |..+++++-+...++..++.+...
T Consensus       345 ~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  345 PPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             cccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence            23334445556666777899999999999999999999544       567788877777777666555443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.30  E-value=1.2  Score=43.58  Aligned_cols=175  Identities=15%  Similarity=0.034  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhh--HHHHHHHHHHHHHHHHhhhhHHhhcccch--HHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSN--SANIVTNFIGTVFLLALLGGYLSDSFLGS--FWTMLIFGF  112 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~--~~~i~~~~~~~~~~~~~~~G~laDr~~Gr--~~~~~~~~~  112 (547)
                      |...+-.+-..++...|-.+..|.|.     +.-++.+  -|.+.+.+.+.+.+++-+...+..|- ..  ...+.+..+
T Consensus       249 ki~LLG~iqsLFE~smytFVFLWTPa-----Lspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~  322 (454)
T KOG4332|consen  249 KIALLGAIQSLFEGSMYTFVFLWTPA-----LSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFL  322 (454)
T ss_pred             HHHHHHHHHHHHhhhhheeeeeeccc-----CCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHH
Confidence            33344445555666555544445442     3333333  47888888888888877776665552 22  223444433


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      +.... +++.+.++...                 ++++.+..-+++..++-..+|.++|.++-+=.+..|++.      |
T Consensus       323 vs~a~-l~Lpilt~~vs-----------------P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------r  378 (454)
T KOG4332|consen  323 VSIAA-LLLPILTSSVS-----------------PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------R  378 (454)
T ss_pred             HHHHH-HHHHHHHhccC-----------------CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------H
Confidence            33332 22222222111                 112333334566666777889999999988888899988      9


Q ss_pred             ccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008953          193 SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGV  241 (547)
Q Consensus       193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~  241 (547)
                      .+.++++..-.|+-..++-..--.=....+-|..|-++.+.+.++.+..
T Consensus       379 stimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~  427 (454)
T KOG4332|consen  379 STIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQ  427 (454)
T ss_pred             hhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHH
Confidence            9999999888887766543221111122345678888877777665543

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=90.97  E-value=2.8  Score=42.25  Aligned_cols=117  Identities=15%  Similarity=0.096  Sum_probs=68.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953           33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF  112 (547)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  112 (547)
                      +..-|+++.+....+....++-+. .++......++|  .  .+  .+.........+++.+.+..+ +|-|.++.++..
T Consensus        25 ~~~~knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg--~--~s--l~~~y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~   96 (390)
T KOG3097|consen   25 LGILKNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLG--T--VS--LGALYLSLIDSSMFMPLLIRF-LGTKWTMVLAVF   96 (390)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCcc--c--ch--hhhhhHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            334477777776666555555443 344433332222  2  22  222233344455555566666 599999988766


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC
Q 008953          113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ  183 (547)
Q Consensus       113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~  183 (547)
                      .+.+.     .++++.                     +.+..++.+-.+.|+|.+..+....+++++.-..
T Consensus        97 ~Y~ly-----iA~Nl~---------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~  141 (390)
T KOG3097|consen   97 PYALY-----IAANLE---------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN  141 (390)
T ss_pred             HHHHH-----HHhhcc---------------------hhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence            55543     333211                     3344567777789999999999988888776543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=89.00  E-value=27  Score=35.18  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=30.0

Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          477 VGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVS  515 (547)
Q Consensus       477 ~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~  515 (547)
                      +...--+.+..+++.|-.+|+......++|-.+++.+.-
T Consensus       361 VNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal  399 (409)
T KOG3880|consen  361 VNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL  399 (409)
T ss_pred             HHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence            444445667788899999999999888888887776653

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.85  E-value=1.3  Score=47.17  Aligned_cols=153  Identities=12%  Similarity=-0.011  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc-CCChh-hHHHHHHHHHHHHHHHHhhhhHHhhcccchH-HHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEM-HFSLS-NSANIVTNFIGTVFLLALLGGYLSDSFLGSF-WTMLIFGFV  113 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-g~~~~-~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~-~~~~~~~~~  113 (547)
                      |++|...+..++..+....+.+.......... +.++. -.-.....|.++-.+++.+..|.- . -.+| +.+.+..+.
T Consensus       269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~-p~~~~~~l~i~s~~  346 (437)
T TIGR00939       269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-W-PDEDSRWLPILSFL  346 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-e-eCCCccchHHHHHH
Confidence            56666666666555555443333322222221 12222 334556667777777777555431 1 1222 133333333


Q ss_pred             ---HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953          114 ---ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK  190 (547)
Q Consensus       114 ---~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~  190 (547)
                         +...+++|...   +.            .+.+. --.+.+..++..+++|+..|-..+....+..+..++++     
T Consensus       347 R~iFIPlf~lcn~~---~~------------~~~p~-~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e-----  405 (437)
T TIGR00939       347 RVLFIPLFLLCNYP---QR------------SRLPV-FFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE-----  405 (437)
T ss_pred             HHHHHHHHHHhcCC---cc------------ccCCe-eecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH-----
Confidence               33333333221   00            00000 00233445556778899999888888888888877655     


Q ss_pred             ccccchhhhhhHHhHhHHHHHHH
Q 008953          191 KLSSYFNAAYFAFSTGELVALTV  213 (547)
Q Consensus       191 ~r~~~~~~~~~~~~ig~~~~~~i  213 (547)
                       |..+-.+..++.++|-.+|..+
T Consensus       406 -~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       406 -REVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHH
Confidence             6666666777777777777655

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=88.08  E-value=4.3  Score=43.34  Aligned_cols=81  Identities=12%  Similarity=0.047  Sum_probs=55.2

Q ss_pred             chhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHH------hhcccch
Q 008953          150 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVW------VQTHSGM  223 (547)
Q Consensus       150 ~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~------l~~~~g~  223 (547)
                      .+++.++...+++++|.=+..|...+.+....|+.-      .+..++.+......|..++..+.+.      ..+....
T Consensus       392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~  465 (498)
T COG3104         392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIE  465 (498)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhh
Confidence            556778888999999999999999999999999764      4556676666666666666555442      2222334


Q ss_pred             hhHHHHHHHHHHH
Q 008953          224 DVGFGVSAAAMAL  236 (547)
Q Consensus       224 ~~~f~~~~~~~~~  236 (547)
                      ...|+..+...++
T Consensus       466 ~~~F~~~g~v~i~  478 (498)
T COG3104         466 GRVFGTIGVVAIV  478 (498)
T ss_pred             hhhHHHHHHHHHH
Confidence            4456655544433

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=87.53  E-value=44  Score=35.83  Aligned_cols=170  Identities=10%  Similarity=0.034  Sum_probs=103.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCC---hhhHHHHHHHHHH-HHHHHHhhhhHHhhcccchHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFS---LSNSANIVTNFIG-TVFLLALLGGYLSDSFLGSFWTMLIFG  111 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~---~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~~  111 (547)
                      ++++..+.+..+|-.+.++.+..     +.+.+..+   +.....+-..+.. ++.+..++-+++.+++ -|.+++.+.+
T Consensus        26 ~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~~   99 (509)
T COG3202          26 LKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYIIL   99 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHHH
Confidence            46677777777777666654433     33444433   4445666666666 6778889999999996 9999999888


Q ss_pred             HHHHHHHHHHHHhhc-cCCCCCCCC---CCCC--CCCc----ccccccchhHHHHHHHHHHHHhcccccc-chhhhcccC
Q 008953          112 FVELSGFILLSVQAH-LPQLKPPKC---NMVT--DSEN----CEEAKGFKASIFFLALYLVAIGSGCVKP-NMIAHGADQ  180 (547)
Q Consensus       112 ~~~~i~~~l~~~~~~-~~~~~~~~~---~~~~--~~~~----~~~~~~~~~~~~~~~~~l~gig~g~~~~-~~~~~~~~~  180 (547)
                      ..+...++++++.-. ......|+-   ++..  +-++    -.+-+.+....+++.-=+.|   ....+ ..+.+..|+
T Consensus       100 ~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg---slV~S~lFw~faNei  176 (509)
T COG3202         100 GFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWG---SLVLSLLFWQFANEI  176 (509)
T ss_pred             HHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence            888888888877632 011111210   0000  0001    00122233334443322222   22222 346777888


Q ss_pred             CCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc
Q 008953          181 FDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH  220 (547)
Q Consensus       181 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~  220 (547)
                      +..++      -.|.++.++...|++..++..+..++..+
T Consensus       177 tt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         177 TTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             hhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            88777      56789999999999999998888888653

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=86.66  E-value=3.6  Score=43.84  Aligned_cols=86  Identities=16%  Similarity=0.159  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhc---chhhHHHHHHHHH
Q 008953          424 IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQS---LKGMQAFLTAMTY  500 (547)
Q Consensus       424 i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~---p~~~rg~~~g~~~  500 (547)
                      +.+|.++.+++.+.++.....          ..+.....+..++..+|..+..+..-+...|..   |.+ ||...+...
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~~----------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~  130 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLPAS----------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVW  130 (433)
T ss_pred             HHHHHHHHHHHHHHHHhcccc----------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHH
Confidence            666666666666655554211          234445566667888899999888888888765   444 778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 008953          501 CSYSFGFYLSSLLVSFVNKV  520 (547)
Q Consensus       501 ~~~~~G~~lg~~i~~~l~~~  520 (547)
                      .++.+|+.++..+.|.+.+.
T Consensus       131 ~~~~~G~lv~~~l~G~l~~~  150 (433)
T PF03092_consen  131 GVRSVGSLVGSLLSGPLLDS  150 (433)
T ss_pred             HHHHHHHHHHHHhhhhhhhc
Confidence            99999999999999877663

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=86.51  E-value=3.4  Score=40.36  Aligned_cols=91  Identities=9%  Similarity=0.027  Sum_probs=67.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH
Q 008953          419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM  498 (547)
Q Consensus       419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~  498 (547)
                      +|+..+.+|.++..+|+......-..       .-...+.|.+.+...+.+.+....+........+.+|+ .||++.|+
T Consensus        64 gp~~~l~iG~~~~~~GY~~~~l~~~~-------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgi  135 (250)
T PF06813_consen   64 GPWVVLLIGAVLGFVGYGLLWLAVSG-------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGI  135 (250)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhC-------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehh
Confidence            56677889999999999877665321       11124666667666777788888888877888899985 69999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 008953          499 TYCSYSFGFYLSSLLVSFV  517 (547)
Q Consensus       499 ~~~~~~~G~~lg~~i~~~l  517 (547)
                      .....++++.+-+.+...+
T Consensus       136 lk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen  136 LKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             hhHHHHhHHHHHHHHHHHH
Confidence            9999888887666555443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=85.35  E-value=11  Score=36.04  Aligned_cols=64  Identities=11%  Similarity=0.023  Sum_probs=50.9

Q ss_pred             chHHHHHHHHHHHHHHHHHhHHHHHHHHhhcch-hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 008953          457 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK-GMQAFLTAMTYC-SYSFGFYLSSLLVSFVNKV  520 (547)
Q Consensus       457 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~-~~rg~~~g~~~~-~~~~G~~lg~~i~~~l~~~  520 (547)
                      +.+.++...++.|++.+...+....+..+..|+ +.|+...+.... ...+|..+++.+.+.+...
T Consensus        93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666668889888889999999999998 778999898888 5788888888766666554

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=84.81  E-value=55  Score=34.33  Aligned_cols=59  Identities=19%  Similarity=0.042  Sum_probs=48.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          456 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV  514 (547)
Q Consensus       456 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~  514 (547)
                      -+-++.+....++|+..|-.......++-+..|++++-.+..+..+....|-+.|.++.
T Consensus       341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            35566677778889988888888888999999999999888888888888877777654

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.26  E-value=37  Score=33.32  Aligned_cols=57  Identities=9%  Similarity=0.000  Sum_probs=34.2

Q ss_pred             cccchhhhhhHHhHhHHHHHHH--HH-Hhhc--ccchhhHHHHHHHHHHHHHHHHHHcCcee
Q 008953          192 LSSYFNAAYFAFSTGELVALTV--LV-WVQT--HSGMDVGFGVSAAAMALGLFGVVSGTLYY  248 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i--~~-~l~~--~~g~~~~f~~~~~~~~~~l~~~~~~~~~~  248 (547)
                      |+.......+..++|++++-+.  .+ -..+  ...|++.+.+.+++.++-++.+....++.
T Consensus         4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f   65 (267)
T PF07672_consen    4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF   65 (267)
T ss_pred             cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5566666667778888775433  22 1111  12399888887777766666665554443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=83.13  E-value=6.3  Score=40.84  Aligned_cols=93  Identities=11%  Similarity=0.064  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchh---hHHHHHHH
Q 008953          422 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG---MQAFLTAM  498 (547)
Q Consensus       422 ~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~---~rg~~~g~  498 (547)
                      +.+.+|.++..+|.+++......     .......+...+.++.++.++|.++.=|....+..++++++   .|..+...
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~-----~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~   76 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIP-----PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNW   76 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTS-----SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhc-----chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHH
Confidence            45788999999999886665321     11112334567788888999999999999999999999887   45556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 008953          499 TYCSYSFGFYLSSLLVSFVNK  519 (547)
Q Consensus       499 ~~~~~~~G~~lg~~i~~~l~~  519 (547)
                      +.+..++|..++..+.+++.+
T Consensus        77 fY~~in~G~~~~~~~~~~i~~   97 (372)
T PF00854_consen   77 FYWGINIGSLFSPTLVPYIQQ   97 (372)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHhhhhHhhcccchhhcc
Confidence            777889999998887777764

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.65  E-value=5.3  Score=33.08  Aligned_cols=40  Identities=23%  Similarity=0.033  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHH
Q 008953           81 NFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFIL  120 (547)
Q Consensus        81 ~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l  120 (547)
                      .=.+...+...+.||+-|||+|.++..++.+++...+...
T Consensus        50 sefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~   89 (116)
T COG5336          50 SEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGV   89 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            3344555666778999999999999877765555444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	547
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		1e-12
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		9e-05

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/472 (20%), Positives = 199/472 (42%), Gaps = 68/472 (14%)
Query: 41  FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSN------SANIVTNFIGTVFLLALLGG 94
           +++  +A E  +   + N L  +++  +  S+        + ++  +F+  V+   LLGG
Sbjct: 16  YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGG 75
Query: 95  YLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASI 154
           +++D F G + T+L    +   G   L++  H                     +GF    
Sbjct: 76  WIADRFFGKYNTILWLSLIYCVGHAFLAIFEH-------------------SVQGF---- 112
Query: 155 FFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL 214
            +  L+L+A+GSG +KP + +   DQFDQSN   ++K    F+  YF  + G   A   +
Sbjct: 113 -YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA---FDMFYFTINFGSFFASLSM 168
Query: 215 VWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRN-----KRPQGSIFTPIAQVFVAAM 269
             +  + G  V FG+    M +       G   Y +     K P G  F P+ +  +   
Sbjct: 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHG--FLPVIRSALLTK 226
Query: 270 LKRKQICPSNPQMLHGLNQN----NVPNDSGSVFLTQRFRFL-----DKACIKVEDGTNK 320
           ++ K        ++ G++      N+P       L      +       A +++E    +
Sbjct: 227 VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERA--R 284
Query: 321 KESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV 380
           K  P        V+ V+ ++ ++ +FA    F ++  Q  +  + Q     N + K    
Sbjct: 285 KSHP-----DAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQA----NDMVKPQWF 335
Query: 381 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAAL 440
            PA +Q++  +++++L+P ++ F +  A +  G +  ++ L+++G G+ +   S I    
Sbjct: 336 EPAMMQALNPLLVMLLIP-FNNFVLYPAIERMGVK--LTALRKMGAGIAITGLSWIVVGT 392
Query: 441 MEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQ 492
           ++       +D G  LSIF     + +    E+  +   +EF Y Q+ K M+
Sbjct: 393 IQLM-----MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 37/177 (20%)
Query: 66  NEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS----FWTMLIFGFVELSGFILL 121
            ++H + + +A+I+  +   V+L   +GG+++D  +G+    FW     G + + G I+L
Sbjct: 47  GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWG----GVLIMLGHIVL 102
Query: 122 SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQF 181
           +    LP                     F AS  F ++ L+ IG+G +KPN+       +
Sbjct: 103 A----LP---------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLY 137
Query: 182 DQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGL 238
           D+ + ++    S +     F  + G  +A  ++   Q  +G  V F ++A  M +GL
Sbjct: 138 DEHDRRRDAGFSIFV----FGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	547
2xut_A	524	Proton/peptide symporter family protein; transport	1e-104
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-21

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  321 bits (826), Expect = e-104
 Identities = 100/531 (18%), Positives = 203/531 (38%), Gaps = 55/531 (10%)

Query: 27  PSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSL------SNSANIVT 80
           P +  K    +   +++  +A E  +   + N L  +++  +  S+      + + ++  
Sbjct: 4   PVDAPKWP--RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFH 61

Query: 81  NFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTD 140
           +F+  V+   LLGG+++D F G + T+L    +   G   L++  H  Q           
Sbjct: 62  SFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG---------- 111

Query: 141 SENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY 200
                         F+  L+L+A+GSG +KP + +   DQFDQSN          F+  Y
Sbjct: 112 --------------FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS---LAQKAFDMFY 154

Query: 201 FAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTP 260
           F  + G   A   +  +  + G  V FG+    M +       G   Y +  P+      
Sbjct: 155 FTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHG 214

Query: 261 IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKV-----E 315
              V  +A+L + +   +   +L  +   +      ++        L  A + V      
Sbjct: 215 FLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGA 274

Query: 316 DGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLT 375
             + + E   +      V+ V+ ++ ++ +FA    F ++  Q  +  + Q + M     
Sbjct: 275 GASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM----V 330

Query: 376 KNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSM 435
           K     PA +Q++  +++++L+P  +    P   +       ++ L+++G G+ +   S 
Sbjct: 331 KPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSW 387

Query: 436 ISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFL 495
           I    ++        D G  LSIF     + +    E+  +   +EF Y Q+ K M+  +
Sbjct: 388 IVVGTIQLMM-----DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442

Query: 496 TAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTG 546
            +    S + G     L    V   T +      +      T   + F  G
Sbjct: 443 MSFWTLSVTVGNLWVLLANVSVKSPTVTE---QIVQTGMSVTAFQMFFFAG 490

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 79/477 (16%), Positives = 171/477 (35%), Gaps = 93/477 (19%)

Query: 68  MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHL 127
           +H + + +A+I+  +   V+L   +GG+++D  +G+   +   G + + G I+L++    
Sbjct: 49  LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG- 107

Query: 128 PQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK 187
                                   AS  F ++ L+ IG+G +KPN+       +D+ +  
Sbjct: 108 ------------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR- 142

Query: 188 QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLY 247
              +  + F+   F  + G  +A  ++   Q  +G  V F ++A  M +GL     G   
Sbjct: 143 ---RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199

Query: 248 Y--------------RNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPN 293
                             +P     +     F+A ++           +++ +  N++P 
Sbjct: 200 TLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIV-----------VMNLVGWNSLPA 248

Query: 294 DSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFN 353
               + +           +          S      VT  E ++ ++S +P+F   ++F 
Sbjct: 249 YINLLTI-----VAIAIPVFY--FAWMISSVK----VTSTEHLR-VVSYIPLFIAAVLFW 296

Query: 354 TILAQLQTFSVQQGSAMN---NKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARK 410
            I         Q    +     +   +   P +  QS+  + +++  P +   +  + + 
Sbjct: 297 AIEE-------QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN 349

Query: 411 YTGHESGISPLQRIGFGLFLATFS---MISAALMEKKRRDSALDSGKTLSIFSITPQFLI 467
                   S   +   GL  A  S   M     +          SGK  S   +   + +
Sbjct: 350 ------QPSSPTKFAVGLMFAGLSFLLMAIPGAL-------YGTSGKV-SPLWLVGSWAL 395

Query: 468 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSS 524
             L EM  +   +    K + K   + + +M + S S G  L++ LV+  N  +  +
Sbjct: 396 VILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVA 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	547
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.93
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.88
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.82
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.37
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.28
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.2
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.12
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.88
2xut_A	524	Proton/peptide symporter family protein; transport	98.21

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=5.4e-28  Score=258.67  Aligned_cols=415  Identities=18%  Similarity=0.269  Sum_probs=281.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhc-ccchHHH
Q 008953           33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINE-----MHFSLSNSANIVTNFIGTVFLLALLGGYLSDS-FLGSFWT  106 (547)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr-~~Gr~~~  106 (547)
                      ++++|.++.+.+..++..+.+|++..+++.|++++     +|.+..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            44568889999999999999999999999999988     99999999999999999999999999999999 7 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCc
Q 008953          107 MLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNP  186 (547)
Q Consensus       107 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~  186 (547)
                      +.++.++..++.++++++.                         +...++++|++.|++.+...+...+++.|.+|++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~  142 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPF-------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR  142 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCC-------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT
T ss_pred             HHHHHHHHHHHHHHHHHhh-------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc
Confidence            9999999999999888763                         345688999999999999999999999999998763


Q ss_pred             ccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeecc---CCCCC-CchhHH
Q 008953          187 KQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNK---RPQGS-IFTPIA  262 (547)
Q Consensus       187 ~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~-~~~~~~  262 (547)
                      +    |++++++++...++|..++|.+++++.++.||++.|++.++..+++++.++...++...+   +++.+ +..+..
T Consensus       143 ~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (491)
T 4aps_A          143 R----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK  218 (491)
T ss_dssp             H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred             c----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence            2    667888899999999999999999999999999999998776666665554433322211   11111 111111


Q ss_pred             HHHHH------------HHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhcc-ccCCCCCCCCCcccc
Q 008953          263 QVFVA------------AMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKV-EDGTNKKESPWRLCT  329 (547)
Q Consensus       263 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  329 (547)
                      +....            ..........                    .++..  .......... .....   ..|+...
T Consensus       219 ~~~~~~g~~l~~~~~~~~~~~~~~~~~--------------------~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~  273 (491)
T 4aps_A          219 PLLVKVSLAVAGFIAIIVVMNLVGWNS--------------------LPAYI--NLLTIVAIAIPVFYFA---WMISSVK  273 (491)
T ss_dssp             HHHHHCCCCCHHHHHHHHHHHHHSSCC--------------------TTHHH--HHHHHHHHHHHHHHHH---HHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcc--------------------cccch--hhhhHHHHHHHHHHHH---HHhhccc
Confidence            10000            0000000000                    00000  0000000000 00000   0010000


Q ss_pred             chhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcce-eCcccccccchhhHHHHHhhhhhhhhhhh
Q 008953          330 VTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFH-VPPASLQSIPYIMLVILVPLYDKFFVPFA  408 (547)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  408 (547)
                       ....++++......++.....++..+.+..+....+...   ..  +.+ ...+.+.....+..++..++.+++.++  
T Consensus       274 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r--  345 (491)
T 4aps_A          274 -VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE---RV--DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA--  345 (491)
T ss_dssp             ---------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH---SC--CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH--
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH---Hh--ccCccCHHHHhccchHHHHHHHHHHHHHHHH--
Confidence             111233344444555666677777777666543322111   11  111 345666677777778888888776654  


Q ss_pred             hhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 008953          409 RKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSL  488 (547)
Q Consensus       409 ~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p  488 (547)
                        .++|+  ....+.+.+|.++.++++++........     +.....+.+++++..++.+++.+...+..++++.|.+|
T Consensus       346 --~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p  416 (491)
T 4aps_A          346 --WKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY-----GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP  416 (491)
T ss_dssp             --TTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC-----CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred             --HhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence              44443  2455667889999988888777653210     11124567778888999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          489 KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  519 (547)
Q Consensus       489 ~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~  519 (547)
                      ++.||+++|+.++...+|+.+++.+.+++.+
T Consensus       417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~  447 (491)
T 4aps_A          417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNA  447 (491)
T ss_dssp             TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999998876654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=1.2e-28  Score=266.07  Aligned_cols=436  Identities=20%  Similarity=0.321  Sum_probs=273.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC------CChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHH
Q 008953           34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMH------FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTM  107 (547)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~  107 (547)
                      +++|.++.+.+..++..+.+|++..+++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            345677888999999999999999999999999999      99999999999999999999999999999944999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc
Q 008953          108 LIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK  187 (547)
Q Consensus       108 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~  187 (547)
                      .++.++..++.++++++.                        .+...++++|++.|++.+...+...+++.|.+|+++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~  144 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIFE------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS  144 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTS------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT
T ss_pred             HHHHHHHHHHHHHHHHhc------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH
Confidence            999999999998888762                        14667889999999999999999999999999988711


Q ss_pred             cccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHH
Q 008953          188 QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVA  267 (547)
Q Consensus       188 ~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (547)
                      +   +.+.+++++...++|.+++|.+++++.+..||++.|++.++..+++++.++..+++.+.+++++++..+..+.+..
T Consensus       145 ~---~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (524)
T 2xut_A          145 L---AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS  221 (524)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence            1   1344555888999999999999999998889999999887776666655554443332222222221111111111


Q ss_pred             HHhhhcccCCCCccc----------ccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCC-------ccccc
Q 008953          268 AMLKRKQICPSNPQM----------LHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPW-------RLCTV  330 (547)
Q Consensus       268 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  330 (547)
                      ..+++....+ ....          ....+..+.   ....   ............     ...+.+|       ...+.
T Consensus       222 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  289 (524)
T 2xut_A          222 ALLTKVEGKG-NIGLVLALIGGVSAAYALVNIPT---LGIV---AGLCCAMVLVMG-----FVGAGASLQLERARKSHPD  289 (524)
T ss_dssp             -----CTTHH-HHHHHHHHHHHHHHHHTGGGTTT---TCSS---HHHHHHHHHHHH-----HHHTGGGTHHHHSCCSCCS
T ss_pred             HHhhhhcccC-ccchhhhhhhhhhhhhhhcccch---hhhh---hhhhhhhhhhhc-----ccccchhhHHhhhhccccH
Confidence            1111100000 0000          000000000   0000   000000000000     0000011       00011


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhh
Q 008953          331 TQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARK  410 (547)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r  410 (547)
                      ...+++++.+....++.....++..+.+..+.+..+...++..   .+ .+.+.+...+.+..++..++.+++..+..+|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (524)
T 2xut_A          290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIER  365 (524)
T ss_dssp             SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC-------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHh
Confidence            1112223333333344444455555555555444433332221   10 2455666777788888888988876665555


Q ss_pred             ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchh
Q 008953          411 YTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG  490 (547)
Q Consensus       411 ~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~  490 (547)
                      .++|   .++.+.+.+|+++.++++++++..+...     +.....+.+++++.+++.+++++...+..++++.|.+|++
T Consensus       366 ~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~  437 (524)
T 2xut_A          366 MGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-----DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA  437 (524)
T ss_dssp             --------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT
T ss_pred             cCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            5433   2455667788888888887766542110     1112346777888899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008953          491 MQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  520 (547)
Q Consensus       491 ~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~  520 (547)
                      .||+++|++++...+|+.+++.+.+.+.+.
T Consensus       438 ~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             CCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999987663

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.93  E-value=1.7e-23  Score=219.82  Aligned_cols=358  Identities=11%  Similarity=0.040  Sum_probs=235.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953           33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF  112 (547)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  112 (547)
                      +++++.++.+.+..+...+........+ +++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            3445666666666666666666554444 457788999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHH---HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953          113 VELSGFILL---SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS  189 (547)
Q Consensus       113 ~~~i~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~  189 (547)
                      +..++.+++   ..+                         .+...++++|++.|++.+...+...+++.|.+|+++    
T Consensus       100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  150 (438)
T 3o7q_A          100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----  150 (438)
T ss_dssp             HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred             HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence            999999888   443                         456779999999999999999999999999999988    


Q ss_pred             cccccchhhhhhHHhHhHHHHHHHHHHhh-cccc-------------------------hhhHHHHHHHHHHHHHHHHHH
Q 008953          190 KKLSSYFNAAYFAFSTGELVALTVLVWVQ-THSG-------------------------MDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       190 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~l~~~~~  243 (547)
                        |++.+++.+...++|..++|.+++++. +..+                         ||+.|++.++..++..+.++.
T Consensus       151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              999999999999999999999999987 5554                         999998766555544444433


Q ss_pred             cC-ceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCC
Q 008953          244 GT-LYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKE  322 (547)
Q Consensus       244 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (547)
                      .+ ++.+++++++++.                                         ......+.+              
T Consensus       229 ~~~p~~~~~~~~~~~~-----------------------------------------~~~~~~~~~--------------  253 (438)
T 3o7q_A          229 TKFPALQSDNHSDAKQ-----------------------------------------GSFSASLSR--------------  253 (438)
T ss_dssp             CCCCCCTTTCCCCSST-----------------------------------------TSHHHHHHH--------------
T ss_pred             HcCCcccccccccccc-----------------------------------------cchhhhHHH--------------
Confidence            21 1110000000000                                         000000000              


Q ss_pred             CCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhh
Q 008953          323 SPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDK  402 (547)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  402 (547)
                               ..++++.....+..++..........+.+.++..+....+.       ...+.......+..++..++..+
T Consensus       254 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~  317 (438)
T 3o7q_A          254 ---------LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTW  317 (438)
T ss_dssp             ---------HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence                     00011111111112222222222222333321211101110       01122333334445555555555


Q ss_pred             hhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHH
Q 008953          403 FFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEF  482 (547)
Q Consensus       403 ~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~  482 (547)
                      +.+    |.       ++++.+.++.++.+++++......              +. +.+...++.+++.+...|..+.+
T Consensus       318 l~~----r~-------~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~g~~~~~~~~~~~~~  371 (438)
T 3o7q_A          318 LIS----RF-------APHKVLAAYALIAMALCLISAFAG--------------GH-VGLIALTLCSAFMSIQYPTIFSL  371 (438)
T ss_dssp             HHH----HS-------CHHHHHHHHHHHHHHHHHHHHHCC--------------HH-HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHH----Hh-------cchHHHHHHHHHHHHHHHHHHHcC--------------Cc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            544    43       233557777777777766655531              22 33445578888999899999999


Q ss_pred             HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008953          483 FYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTS  522 (547)
Q Consensus       483 ~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~  522 (547)
                      ..|..|++ +++++++.. .+.+|+.+++.+.+.+.+..+
T Consensus       372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            99999977 999999887 677999999999999988654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.93  E-value=1.5e-24  Score=228.74  Aligned_cols=374  Identities=9%  Similarity=-0.059  Sum_probs=237.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      ++.++.+.+..+...+..+.....++.+ .+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            4556666666666766666666666544 4567 9999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHH----hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953          116 SGFILLSV----QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK  191 (547)
Q Consensus       116 i~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~  191 (547)
                      ++.+++++    +.                         +...++++|++.|++.+...+...+++.|.+|+++      
T Consensus       104 ~~~~~~~~~~~~~~-------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------  152 (451)
T 1pw4_A          104 AVMLFMGFVPWATS-------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------  152 (451)
T ss_dssp             HHHHHHHHCHHHHS-------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred             HHHHHHHhhhhccc-------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------
Confidence            99999988    53                         34558889999999999999999999999999887      


Q ss_pred             cccchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHh
Q 008953          192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAML  270 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (547)
                      |++++++.+...++|.+++|.+++++.+..| ||+.|++.++..++..+..+...++.+..+...+. .           
T Consensus       153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------  220 (451)
T 1pw4_A          153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E-----------  220 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-----------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-----------
Confidence            9999999999999999999999999888888 99999988776655544433332222111100000 0           


Q ss_pred             hhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccc-cchhHHHHHHHHhHHHHHHHH
Q 008953          271 KRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLC-TVTQVEQVKVLISVVPIFACT  349 (547)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  349 (547)
                                +...+  +.++   ..+. .                   +.+..++.. ..+..++++.+...+..++..
T Consensus       221 ----------~~~~~--~~~~---~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (451)
T 1pw4_A          221 ----------EYKND--YPDD---YNEK-A-------------------EQELTAKQIFMQYVLPNKLLWYIAIANVFVY  265 (451)
T ss_dssp             ----------TTCCC--------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             ----------hhccc--cccc---chhh-h-------------------hcccccccchHHHHHcCHHHHHHHHHHHHHH
Confidence                      00000  0000   0000 0                   000000000 000011111111122222222


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHH
Q 008953          350 IIFNTILAQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL  428 (547)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~  428 (547)
                      ..+.......+.+.       ....  +++. ..+.+.....++.++..++..++.+    |..+     ++++.+.++.
T Consensus       266 ~~~~~~~~~~~~~~-------~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----~~~~-----~~~~~~~~~~  327 (451)
T 1pw4_A          266 LLRYGILDWSPTYL-------KEVK--HFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFR-----GNRGATGVFF  327 (451)
T ss_dssp             HHHHHHHHHHHHHB-------TTBS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTST-----TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-------HHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc-----CCchhHHHHH
Confidence            22222222222211       1111  1111 1123334444555555555555543    4300     1123344454


Q ss_pred             HHHH-HHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHH-H
Q 008953          429 FLAT-FSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSF-G  506 (547)
Q Consensus       429 ~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~-G  506 (547)
                      .+.. ++++.+....            ..+.+.+.+..++.|++.+...+....+..|.+|++.||+++|+.+....+ |
T Consensus       328 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g  395 (451)
T 1pw4_A          328 MTLVTIATIVYWMNP------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG  395 (451)
T ss_dssp             HHHHHHHHHHTTSCC------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHH
Confidence            4444 5555444321            135566677778888888888888899999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHh
Q 008953          507 FYLSSLLVSFVNKV  520 (547)
Q Consensus       507 ~~lg~~i~~~l~~~  520 (547)
                      +.+++.+.+.+.+.
T Consensus       396 ~~~~~~~~g~l~~~  409 (451)
T 1pw4_A          396 SVAASAIVGYTVDF  409 (451)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988774

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=6.6e-23  Score=211.28  Aligned_cols=346  Identities=9%  Similarity=0.006  Sum_probs=228.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953           40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI  119 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~  119 (547)
                      +.+++..++..+......+.+|.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            445566666666666666666654 567999999999999999999999999999999997 999999999999999999


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953          120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA  199 (547)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  199 (547)
                      ++.++                         ++...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.
T Consensus        81 ~~~~~-------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  129 (375)
T 2gfp_A           81 VAVTT-------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLL  129 (375)
T ss_dssp             HHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHH
T ss_pred             HHHHh-------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHH
Confidence            88886                         356778899999999999999999999999999887      99999999


Q ss_pred             hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCC
Q 008953          200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSN  279 (547)
Q Consensus       200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (547)
                      +...++|..++|.+++++.++.|||+.|++.++..++..+......++.   ++++++                     +
T Consensus       130 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------------~  185 (375)
T 2gfp_A          130 NMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET---RPVDAP---------------------R  185 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC---STTTCC---------------------C
T ss_pred             HHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCccc---CCCCcc---------------------c
Confidence            9999999999999999999988999999887665544433222211111   110000                     0


Q ss_pred             cccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 008953          280 PQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL  359 (547)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (547)
                                ++                             ...+++    +..++++.....+..++............
T Consensus       186 ----------~~-----------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (375)
T 2gfp_A          186 ----------TR-----------------------------LLTSYK----TLFGNSGFNCYLLMLIGGLAGIAAFEACS  222 (375)
T ss_dssp             ----------CC-----------------------------TTTCST----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ----------cc-----------------------------HHHHHH----HHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence                      00                             000010    11122222222222222222222222222


Q ss_pred             hhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHH-HHHHHH--
Q 008953          360 QTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFL-ATFSMI--  436 (547)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l-~~i~~~--  436 (547)
                      +.+.... ...+..       ..+.+.....++.++..++.+++    .+|.+       +  ++..+..+ ...+..  
T Consensus       223 ~~~~~~~-~g~~~~-------~~g~~~~~~~~~~~~~~~~~~~l----~~r~~-------~--~~~~~~~~~~~~~~~~~  281 (375)
T 2gfp_A          223 GVLMGAV-LGLSSM-------TVSILFILPIPAAFFGAWFAGRP----NKRFS-------T--LMWQSVICCLLAGLLMW  281 (375)
T ss_dssp             SCSSHHH-HHHHHH-------HHHHHHHTHHHHHHHHHHHHHTT----TTHHH-------H--HHHHHHHHHHHTSSSSS
T ss_pred             HHHHHHH-hCCCHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------H--HHHHHHHHHHHHHHHHH
Confidence            2222110 111111       11223333444445555554433    22321       1  24444433 222222  


Q ss_pred             HHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953          437 SAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSF  516 (547)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~  516 (547)
                      ......            ..+.+.+++..++.+++.+...+....+..|..| ++||++.|+.+..+.+|..+++.+.+.
T Consensus       282 ~~~~~~------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~  348 (375)
T 2gfp_A          282 IPDWFG------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM  348 (375)
T ss_dssp             HHHHHH------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred             HHhhhc------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            222211            1245556677788999999999999999999999 899999999999999999999988887


Q ss_pred             HHH
Q 008953          517 VNK  519 (547)
Q Consensus       517 l~~  519 (547)
                      +.+
T Consensus       349 l~~  351 (375)
T 2gfp_A          349 LPQ  351 (375)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            765

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.88  E-value=4.7e-22  Score=212.35  Aligned_cols=154  Identities=16%  Similarity=0.036  Sum_probs=115.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccch
Q 008953           72 LSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFK  151 (547)
Q Consensus        72 ~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (547)
                      ..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++........       ........-..+
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~-------~~~~~~~~~a~~  125 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN-------PDNTVPVYLAGY  125 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS-------SSSSCCGGGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-------chhHHHHHHhhh
Confidence            34568889999999999999999999997 9999999999999999999986421000000       000000111256


Q ss_pred             hHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc--------cch
Q 008953          152 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH--------SGM  223 (547)
Q Consensus       152 ~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~--------~g~  223 (547)
                      ...++++|+++|+|.|+..+..+++++|..|++.      |++..+..+....+|..+++.++..+...        .+|
T Consensus       126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4gc0_A          126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW  199 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence            7889999999999999999999999999999887      89999999999999999998887665432        346


Q ss_pred             hhHHHHHHHHHHHHHH
Q 008953          224 DVGFGVSAAAMALGLF  239 (547)
Q Consensus       224 ~~~f~~~~~~~~~~l~  239 (547)
                      ++.+.+..+..++.++
T Consensus       200 ~~~~~~~~~~~~~~~~  215 (491)
T 4gc0_A          200 RYMFASECIPALLFLM  215 (491)
T ss_dssp             HHHHHTTHHHHHHHHH
T ss_pred             HHHhhhhhhhhhhhhh
Confidence            6666655444443333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.82  E-value=2.2e-20  Score=195.98  Aligned_cols=362  Identities=10%  Similarity=-0.003  Sum_probs=202.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.++.+....++..+.+..+.+++|.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            6677777777777777777778999999999999999999999999999999999999999997 999999988776654


Q ss_pred             HHHHH---HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          117 GFILL---SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       117 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      +...+   ..+..+                        ...+...+.+.+++.+...+...+...+..++. +++   ++
T Consensus        86 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~---~~  137 (417)
T 2cfq_A           86 MFAPFFIFIFGPLL------------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-SRR---SN  137 (417)
T ss_dssp             CHHHHHHHTHHHHH------------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH-HHH---HT
T ss_pred             HHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-hhh---cc
Confidence            32211   111100                        000123344444444433333333333333221 111   56


Q ss_pred             cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhc
Q 008953          194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRK  273 (547)
Q Consensus       194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (547)
                      ..++..+...++|..++|.+++++.+ .+|++.|++.++..++.++..+..+++.   ++..+.                
T Consensus       138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------------  197 (417)
T 2cfq_A          138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSATV----------------  197 (417)
T ss_dssp             CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSCS----------------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---cccccc----------------
Confidence            66777777789999999999999886 5799988876544333322222111110   000000                


Q ss_pred             ccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHH
Q 008953          274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFN  353 (547)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (547)
                         .+.         .++     +..+.+   ..+..                    +..++++ .+............+
T Consensus       198 ---~~~---------~~~-----~~~~~~---~~~~~--------------------~~~~~~~-~~~~~~~~~~~~~~~  236 (417)
T 2cfq_A          198 ---ANA---------VGA-----NHSAFS---LKLAL--------------------ELFRQPK-LWFLSLYVIGVSCTY  236 (417)
T ss_dssp             ---SSS---------SSS-----CCCCCC---HHHHH--------------------HHTTCHH-HHHHHHHHHHHHHHH
T ss_pred             ---ccc---------ccc-----cccccc---HHHHH--------------------HHhcCCc-hhhHHHHHHHHHHHH
Confidence               000         000     000000   00000                    0001111 111111111111122


Q ss_pred             HHH-hhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHH
Q 008953          354 TIL-AQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA  431 (547)
Q Consensus       354 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~  431 (547)
                      ..+ .+.+.++..+   ....   +.+. ..+....++.+...+...+..++.|    |.+       +++.+..+.++.
T Consensus       237 ~~~~~~~~~~~~~~---~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g-------~~~~l~~~~~~~  299 (417)
T 2cfq_A          237 DVFDQQFANFFTSF---FATG---EQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIG-------GKNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHT---SSSH---HHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHC-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---Hhcc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHH----Hhc-------HHHHHHHHHHHH
Confidence            222 2222222111   1100   0000 0112223333344444445555544    432       234466677777


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHH
Q 008953          432 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLS  510 (547)
Q Consensus       432 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~~G~~lg  510 (547)
                      +++++..+..              .+.+.+++..++.+++.....+..+.++.|..|++.||++.++ ++..+++|+.++
T Consensus       300 ~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g  365 (417)
T 2cfq_A          300 SVRIIGSSFA--------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM  365 (417)
T ss_dssp             HHHHHHHTTC--------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHh--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence            6665554432              2445555566677777777777788999999999999999998 588899999999


Q ss_pred             HHHHHHHHH
Q 008953          511 SLLVSFVNK  519 (547)
Q Consensus       511 ~~i~~~l~~  519 (547)
                      |.+.+++.+
T Consensus       366 p~l~G~l~~  374 (417)
T 2cfq_A          366 SVLAGNMYE  374 (417)
T ss_dssp             THHHHTHHH
T ss_pred             hhhHHHHHH
Confidence            999997765

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.49  E-value=1.7e-13  Score=143.82  Aligned_cols=178  Identities=14%  Similarity=0.077  Sum_probs=147.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhccc--chHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFL--GSFWTMLIFGFV  113 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~--Gr~~~~~~~~~~  113 (547)
                      .+.++.+++..++..+..+.+..++|.|+++.+|++..+++++.+...++..++.++.|+++|| +  |||+.+.++.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~  329 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  329 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence            4678888888888999999999999999998899999999999999999999999999999999 6  889888877666


Q ss_pred             HH-HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953          114 EL-SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL  192 (547)
Q Consensus       114 ~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r  192 (547)
                      .. ++.+++....+                       .+...+.+..++.|++.+...+...+++.|.+|+++      |
T Consensus       330 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  380 (451)
T 1pw4_A          330 LVTIATIVYWMNPA-----------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A  380 (451)
T ss_dssp             HHHHHHHHTTSCCT-----------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H
T ss_pred             HHHHHHHHHHHhcc-----------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------h
Confidence            55 45444433210                       234556666777888888888888899999999887      9


Q ss_pred             ccchhhhhhHHhH-hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953          193 SSYFNAAYFAFST-GELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       193 ~~~~~~~~~~~~i-g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ++++++++...++ |..++|.+.|++.+..||+..|++.++..+++.+..+.
T Consensus       381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 99999999999999999999999877766666555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.37  E-value=3.7e-12  Score=133.09  Aligned_cols=169  Identities=15%  Similarity=0.129  Sum_probs=134.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHH-hhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITY-VINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      +.++..++..++.....+.+..+++.| +++.+|++..+++.+.+.+.++..++.+++|+++||+ |||+.+.++.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            567777777788888888888999999 8888899999999999999999999999999999996 99999999988888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      ++.+++....                         +.. ..+..++.+++.+...|...++..|.+|++       ++.+
T Consensus       337 ~~~~~~~~~~-------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~  383 (438)
T 3o7q_A          337 ALCLISAFAG-------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYG  383 (438)
T ss_dssp             HHHHHHHHCC-------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHH
T ss_pred             HHHHHHHHcC-------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccch
Confidence            7777766642                         222 233346778888888888889889988854       3344


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~  240 (547)
                      .++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.++.
T Consensus       384 ~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             hhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            44443 456899999999999999999 999998765554444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.28  E-value=1.3e-11  Score=128.95  Aligned_cols=176  Identities=9%  Similarity=-0.081  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCC---ChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHF---SLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV  113 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  113 (547)
                      +.++...+..+.....++....++|.|+.+.++.   +....+...+...++..++.++.|+++||+ |||+++.++.++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~  298 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence            4455555444444455555557788898776653   234456667777777888999999999996 999999888777


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953          114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS  193 (547)
Q Consensus       114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~  193 (547)
                      ..++.+++++.                         .+...+++..++.+++.+...+...++..|.+|++.      |+
T Consensus       299 ~~~~~~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g  347 (417)
T 2cfq_A          299 MSVRIIGSSFA-------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SA  347 (417)
T ss_dssp             HHHHHHHHTTC-------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HH
T ss_pred             HHHHHHHHHHh-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HH
Confidence            77665555443                         123344455555666655555666788999999776      88


Q ss_pred             cchhh-hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008953          194 SYFNA-AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSG  244 (547)
Q Consensus       194 ~~~~~-~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~  244 (547)
                      ++++. ++...++|..++|.++|++.++.|++..|.+.++..+++.+..+..
T Consensus       348 ~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  399 (417)
T 2cfq_A          348 TIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence            88888 4777889999999999999988888888888777766666555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.20  E-value=3.4e-11  Score=127.99  Aligned_cols=187  Identities=9%  Similarity=-0.030  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHH-----HHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTML-----IFG  111 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-----~~~  111 (547)
                      ...+.+.+..++....++....+++.|..+.++.+..+.+.+.....+...++.++.|+++||+ |||+...     ++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~  361 (491)
T 4aps_A          283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGL  361 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHH
Confidence            3455555566666677777778899999988888877788888888889999999999999996 9986554     566


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953          112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK  191 (547)
Q Consensus       112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~  191 (547)
                      ++..++.+++........                .....+...+.+..++.+++.+...+...+++.|.+|++.      
T Consensus       362 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------  419 (491)
T 4aps_A          362 MFAGLSFLLMAIPGALYG----------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------  419 (491)
T ss_dssp             HHHHHHHTTTHHHHHHCC----------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------
T ss_pred             HHHHHHHHHHHHHHHhcC----------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------
Confidence            666666555544321000                0011234556667778899999988999999999999998      


Q ss_pred             cccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCce
Q 008953          192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLY  247 (547)
Q Consensus       192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~  247 (547)
                      |+++.++++...++|..++|.+.+++.+. ++.+.|.+.++..+++.+..+...++
T Consensus       420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          420 NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888764 66667777666666655555554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.12  E-value=1.7e-10  Score=122.48  Aligned_cols=185  Identities=11%  Similarity=-0.039  Sum_probs=123.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      +.........++..+..+....+..+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI  354 (491)
T ss_dssp             THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence            3444444445555444444444455566667888888888888888888999999999999996 999999998888777


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +.+.++.......                   ........+..+..+++. ...+....+.+|.+|.+.      |+++.
T Consensus       355 ~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~  408 (491)
T 4gc0_A          355 GMFSLGTAFYTQA-------------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKAL  408 (491)
T ss_dssp             HHHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHH
T ss_pred             HHHHHHHHHhccc-------------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHH
Confidence            7766655432111                   011112222222222222 334666788999999998      99999


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhc------ccchhhHHHHHHHHHHHHHHHHHHcCcee
Q 008953          197 NAAYFAFSTGELVALTVLVWVQT------HSGMDVGFGVSAAAMALGLFGVVSGTLYY  248 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~------~~g~~~~f~~~~~~~~~~l~~~~~~~~~~  248 (547)
                      ++.+....+++.+++.+.+.+.+      ..++...|++.++..+++.+..++..|+.
T Consensus       409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            99999999999998888776643      23455667777766666666655544443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.88  E-value=2.5e-10  Score=116.81  Aligned_cols=164  Identities=13%  Similarity=0.041  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH-HH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV-EL  115 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~-~~  115 (547)
                      |.++...+..++.....+....+.|.|+++.+|.++.+++.+.+...++..++.++.|+++||+ |++  +..+... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            5677778888888888888889999999988999999999999999999999999999999996 873  2233222 22


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      .+..+......                     ...+...+++..++.+++.+...+...++..|.+| ++      |+++
T Consensus       276 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~  327 (375)
T 2gfp_A          276 AGLLMWIPDWF---------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTA  327 (375)
T ss_dssp             TSSSSSHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHH
T ss_pred             HHHHHHHHhhh---------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchH
Confidence            22221111100                     00234456667778889999999999999999987 55      8999


Q ss_pred             hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHH
Q 008953          196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA  231 (547)
Q Consensus       196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~  231 (547)
                      +++.+...++|..++|.+.+.+.+..+++..+++.+
T Consensus       328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          328 GALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999999999988777887776643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.21  E-value=1.1e-06  Score=93.89  Aligned_cols=150  Identities=13%  Similarity=0.038  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHh----hcccch----HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccc
Q 008953           74 NSANIVTNFIGTVFLLALLGGYLS----DSFLGS----FWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCE  145 (547)
Q Consensus        74 ~~~~i~~~~~~~~~~~~~~~G~la----Dr~~Gr----~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  145 (547)
                      ..+.+.....++..+..++.+++.    ||. |+    ++.+.++.++..++.+++........                
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------------  398 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD----------------  398 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT----------------
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence            355555555555666667777664    443 43    24555666666666555544311000                


Q ss_pred             ccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhccc--ch
Q 008953          146 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS--GM  223 (547)
Q Consensus       146 ~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~--g~  223 (547)
                      .....+...+++..++.|++.+...+...++..|.+|++.      |++++++++...++|..++|.+.+++.+..  +|
T Consensus       399 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~  472 (524)
T 2xut_A          399 GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQ  472 (524)
T ss_dssp             TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            0001234456667788899999989999999999999888      999999999999999999999999988743  23


Q ss_pred             ---------hhHHHHHHHHHHHHHHHHHHcCc
Q 008953          224 ---------DVGFGVSAAAMALGLFGVVSGTL  246 (547)
Q Consensus       224 ---------~~~f~~~~~~~~~~l~~~~~~~~  246 (547)
                               +..|++.++..+++.+.++...+
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          473 IVQTGMSVTAFQMFFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                     22355555555555554444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	547
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.87
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.42
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.31

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5e-24  Score=221.06  Aligned_cols=175  Identities=11%  Similarity=0.007  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHH---hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           40 VFVLGLQAFEIMAIA---AVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        40 ~~~~~~~~~~~~~~~---~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |.+....++..+..|   .....+.+++. ++|+|..|.+++.+++.++..++.+++|+++||+ |||+++.++.++..+
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~  101 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA  101 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            444443443333333   23455666776 5899999999999999999999999999999997 999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +.++++++....                     .+...+++.|++.|++.+...+...+++.|.+|+++      |++.+
T Consensus       102 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~  154 (447)
T d1pw4a_         102 VMLFMGFVPWAT---------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIV  154 (447)
T ss_dssp             HHHHHHHCHHHH---------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHH
T ss_pred             HHhhccccchhh---------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccc
Confidence            988887753211                     234568899999999999999999999999999888      99999


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHHH
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHS-GMDVGFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~-g~~~~f~~~~~~~~~~l~~~~~  243 (547)
                      ++.+...++|..++|.+++.+.... +|++.|++.+...++..+..+.
T Consensus       155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  202 (447)
T d1pw4a_         155 SVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA  202 (447)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHH
Confidence            9999999999999999988766544 6999988876655554444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=4.8e-21  Score=194.23  Aligned_cols=368  Identities=10%  Similarity=0.005  Sum_probs=212.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953           37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS  116 (547)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i  116 (547)
                      |++|.+.+..++..+......+.+|.|+++++|+|+.+.|++.+++.++..++.++.|+++||+ ||||+++++.....+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            7889999999988888888889999999999999999999999999999999999999999997 999999999888888


Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953          117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF  196 (547)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  196 (547)
                      +..++....+.+.                     .....++.+.+.+.+.+...........+..+++. +   .+....
T Consensus        86 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~  140 (417)
T d1pv7a_          86 MFAPFFIFIFGPL---------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-R---RSNFEF  140 (417)
T ss_dssp             THHHHHHHTHHHH---------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH-H---HHSCCH
T ss_pred             HHHHHHHhhhhhh---------------------HHHHHHHHHHHhhhcccccccchhhcccccccchh-h---hhHHHH
Confidence            8877776532100                     11112233333333333333333332222222211 1   145556


Q ss_pred             hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccC
Q 008953          197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQIC  276 (547)
Q Consensus       197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (547)
                      +........+..++|.+++++.+.. |+..+........+..+......++.+..+++.++             .+.  .
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~--~  204 (417)
T d1pv7a_         141 GRARMFGCVGWALGASIVGIMFTIN-NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANA-------------VGA--N  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHH-------------HHS--C
T ss_pred             HHHhhhhcccccccccccccccccc-ccccccchhhHHHHHHHHHHHHhcccccchhhhhh-------------hhh--h
Confidence            6677777889999999998888754 44445444433333333333322221111111100             000  0


Q ss_pred             CCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008953          277 PSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTIL  356 (547)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (547)
                      ..                     ...   .....                    .....++...................
T Consensus       205 ~~---------------------~~~---~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (417)
T d1pv7a_         205 HS---------------------AFS---LKLAL--------------------ELFRQPKLWFLSLYVIGVSCTYDVFD  240 (417)
T ss_dssp             CC---------------------CCC---HHHHH--------------------HHTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc---------------------ccc---ccccc--------------------cccccccccchhhhhHHHHHHHHhhh
Confidence            00                     000   00000                    00000000001111111111111111


Q ss_pred             hhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHH
Q 008953          357 AQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSM  435 (547)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~  435 (547)
                      ..........   ....   +... ..........+...+...+..++    .+|.       .+++.+.++.++.+++.
T Consensus       241 ~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~-------~~~~~~~~~~~~~~~~~  303 (417)
T d1pv7a_         241 QQFANFFTSF---FATG---EQGTRVFGYVTTMGELLNASIMFFAPLI----INRI-------GGKNALLLAGTIMSVRI  303 (417)
T ss_dssp             HHHHHHHTTS---SSCH---HHHHHHHHHHHHHHHHHHHHHHTTHHHH----HHHH-------CHHHHHHHHHHHHHHHH
T ss_pred             cccccccccc---cccc---ccchhhhcccccccccccccchhhhhhh----hccc-------ccccchhhhHHHHHHhh
Confidence            1111111100   0000   0000 01111122223333333333333    3443       34466778888888877


Q ss_pred             HHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHH-HHHHHHHHHHHHHHH
Q 008953          436 ISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMT-YCSYSFGFYLSSLLV  514 (547)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~-~~~~~~G~~lg~~i~  514 (547)
                      +.....              .+.+.+++..++.+++.+...+...++..|.+|++.|+++.|+. ++.+.+|..+++.+.
T Consensus       304 ~~~~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~  369 (417)
T d1pv7a_         304 IGSSFA--------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             HHHHTC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             hccccc--------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776653              46677788888999999999999999999999999999999975 567889999999999


Q ss_pred             HHHHHhh
Q 008953          515 SFVNKVT  521 (547)
Q Consensus       515 ~~l~~~~  521 (547)
                      +++.+..
T Consensus       370 G~l~~~~  376 (417)
T d1pv7a_         370 GNMYESI  376 (417)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=2.7e-13  Score=139.09  Aligned_cols=178  Identities=15%  Similarity=0.006  Sum_probs=136.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953           36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  115 (547)
                      .+.++.+....++.....+....+.+.|+.+.++.+..+.+.......+...++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            46778888888889999999999999999999999999999999999999999999999999997 87654444433333


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953          116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY  195 (547)
Q Consensus       116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  195 (547)
                      +...........+                    ..+.....+..++.|++.++..+...++..|.+|++.      |+++
T Consensus       327 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~  380 (447)
T d1pw4a_         327 LVTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA  380 (447)
T ss_dssp             HHHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred             HHHHHHHHHHhcc--------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            2222222211101                    1344556666677788888878888889999999887      8999


Q ss_pred             hhhhhhHHhH-hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008953          196 FNAAYFAFST-GELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFG  240 (547)
Q Consensus       196 ~~~~~~~~~i-g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~  240 (547)
                      .++.+...++ |..++|.+.|++.+++||+..|++.++..+++.+.
T Consensus       381 ~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         381 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  426 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            9998888777 56778999999999999999888766655554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=5e-13  Score=134.10  Aligned_cols=145  Identities=10%  Similarity=-0.077  Sum_probs=118.5

Q ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccc
Q 008953           67 EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEE  146 (547)
Q Consensus        67 ~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (547)
                      +.+.+....+.......++..++.++.|++.||+ |+|+.+.++.++..++.+++...                      
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~----------------------  309 (417)
T d1pv7a_         253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA----------------------  309 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC----------------------
T ss_pred             ccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc----------------------
Confidence            3445556677778888888999999999999997 99999999988888888777765                      


Q ss_pred             cccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh-hhHHhHhHHHHHHHHHHhhcccchhh
Q 008953          147 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA-YFAFSTGELVALTVLVWVQTHSGMDV  225 (547)
Q Consensus       147 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~~~~~i~~~l~~~~g~~~  225 (547)
                         .+...+++..++.+++.+...+...+++.|.+|++.      |++.+++. .....+|..++|.+.|++.+++|++.
T Consensus       310 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~  380 (417)
T d1pv7a_         310 ---TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG  380 (417)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             ---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence               345566777778899999999999999999999887      89999975 45667999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 008953          226 GFGVSAAAMALGLFGVVS  243 (547)
Q Consensus       226 ~f~~~~~~~~~~l~~~~~  243 (547)
                      .|++.++..++..+...+
T Consensus       381 ~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         381 AYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            998877666555444333