Citrus Sinensis ID: 008963
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 547 | ||||||
| 255585488 | 533 | glycosyltransferase, putative [Ricinus c | 0.957 | 0.983 | 0.652 | 0.0 | |
| 317106706 | 530 | JHL06B08.8 [Jatropha curcas] | 0.936 | 0.966 | 0.670 | 0.0 | |
| 356504769 | 537 | PREDICTED: uncharacterized glycosyltrans | 0.904 | 0.921 | 0.669 | 0.0 | |
| 224139884 | 444 | predicted protein [Populus trichocarpa] | 0.780 | 0.961 | 0.770 | 0.0 | |
| 356572020 | 530 | PREDICTED: uncharacterized glycosyltrans | 0.914 | 0.943 | 0.666 | 0.0 | |
| 357509679 | 541 | Glycosyltransferase [Medicago truncatula | 0.879 | 0.889 | 0.661 | 0.0 | |
| 56409840 | 541 | glycosyltransferase [Medicago truncatula | 0.879 | 0.889 | 0.659 | 0.0 | |
| 224086964 | 413 | predicted protein [Populus trichocarpa] | 0.747 | 0.990 | 0.782 | 0.0 | |
| 225441880 | 529 | PREDICTED: uncharacterized protein LOC10 | 0.937 | 0.969 | 0.637 | 0.0 | |
| 297817062 | 512 | hypothetical protein ARALYDRAFT_486181 [ | 0.862 | 0.921 | 0.607 | 1e-179 |
| >gi|255585488|ref|XP_002533436.1| glycosyltransferase, putative [Ricinus communis] gi|223526710|gb|EEF28943.1| glycosyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/550 (65%), Positives = 433/550 (78%), Gaps = 26/550 (4%)
Query: 5 YYQRYLKLKKAMQQIPFREHFVNDGDGDDDDDEESRAGAAALVFVCAPPSYHNKRSSSTT 64
+Y RY +LKK + H G+ D + AL VC Y+ ++
Sbjct: 3 HYHRYSQLKKD----EYHHHQQQHGEEDIE----------ALALVCGNSGYYKRKRPKLL 48
Query: 65 SRTKLLSLLLLSLLSCTFILTPHALSLFYSFGAEDEGLVA-ADVNAPLCSSISNGTICCD 123
S L L +L+ F + A SL YSF E +G++ DVNA LCSSISNGT+CCD
Sbjct: 49 SLLFLSLLCCCLILAPHFFCSSSAFSLLYSFVVETDGVIGDVDVNASLCSSISNGTMCCD 108
Query: 124 RSGIRTDVCIMKGDVRTNSASSSIFLYKNTNGFINYVSSMVEE-KELQHEKIRPYTRKWE 182
R R+D+CIMKGD+RT+SASSS+ LY + N SS++++ +E+QHEKI+PYTRKWE
Sbjct: 109 RRSFRSDICIMKGDIRTHSASSSVLLYTSRN-----TSSLIKDNEEIQHEKIKPYTRKWE 163
Query: 183 TSVMDTIDELDLVVKKENETANHHCDVVHDVPAVFFSTGGYTGNVYHEFNDGILPLYITS 242
TSVM TID+LDL++K+E + NH CDV HDVPAVFFSTGGYTGNVYHEFNDGI+PLYITS
Sbjct: 164 TSVMGTIDQLDLILKQEKSSVNHRCDVKHDVPAVFFSTGGYTGNVYHEFNDGIVPLYITS 223
Query: 243 QHLKKKVVFVILEYHNWWIMKYGDILSRLSDYPPIDFSGDKRTHCFPEAIVGLRIHDELT 302
QHLK+KVVFVILEYH WW+MKYGDILSRLSDYP ID+SGDKRTHCFPEAIVGLRIHDELT
Sbjct: 224 QHLKRKVVFVILEYHTWWMMKYGDILSRLSDYPAIDYSGDKRTHCFPEAIVGLRIHDELT 283
Query: 303 VDPSLMRGNKNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLS-----LSPSSDPSFKNV 357
VD SLM+GNK+ +DF N+LD+AY PRI+GLI++EE EA +KL LSPSS+ +
Sbjct: 284 VDSSLMKGNKSIVDFHNLLDKAYRPRIKGLIREEEHEALKKLKQKVLPLSPSSETLLEFR 343
Query: 358 KEVQGDQSKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALN 417
K+VQ + K+PKLVILSRN SRAITNE+ LVKMAE IGF+V+V+RP+RT+ELAKIYRALN
Sbjct: 344 KDVQESKHKRPKLVILSRNASRAITNEDLLVKMAEGIGFRVEVLRPERTTELAKIYRALN 403
Query: 418 SSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYIGYTILPR 477
SS+VM+GVHGAAMTHFLFMKPGSVFIQVIPLGT+WAAETYYGEPARKLGLKYIGY ILPR
Sbjct: 404 SSEVMIGVHGAAMTHFLFMKPGSVFIQVIPLGTEWAAETYYGEPARKLGLKYIGYQILPR 463
Query: 478 ESSLYDQYDKNDPVLRDPSSVNEKGWQYTKTIYLDGQNVRLNLRRFQKRLVRAYDYSINR 537
ESSLYD+YDKNDPVL+DP+S++ KGWQYTKTIYLD QNVRL+L RFQK+LV AY++S+ +
Sbjct: 464 ESSLYDKYDKNDPVLQDPASISNKGWQYTKTIYLDSQNVRLDLERFQKQLVLAYEHSMKK 523
Query: 538 ISQNCHHQSQ 547
++ + H S
Sbjct: 524 MNHSSRHHSH 533
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|317106706|dbj|BAJ53206.1| JHL06B08.8 [Jatropha curcas] | Back alignment and taxonomy information |
|---|
| >gi|356504769|ref|XP_003521167.1| PREDICTED: uncharacterized glycosyltransferase AGO61-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224139884|ref|XP_002323324.1| predicted protein [Populus trichocarpa] gi|222867954|gb|EEF05085.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356572020|ref|XP_003554168.1| PREDICTED: uncharacterized glycosyltransferase AGO61-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357509679|ref|XP_003625128.1| Glycosyltransferase [Medicago truncatula] gi|355500143|gb|AES81346.1| Glycosyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|56409840|emb|CAI30145.1| glycosyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|224086964|ref|XP_002308019.1| predicted protein [Populus trichocarpa] gi|222853995|gb|EEE91542.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|225441880|ref|XP_002284307.1| PREDICTED: uncharacterized protein LOC100245312 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297817062|ref|XP_002876414.1| hypothetical protein ARALYDRAFT_486181 [Arabidopsis lyrata subsp. lyrata] gi|297322252|gb|EFH52673.1| hypothetical protein ARALYDRAFT_486181 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 547 | ||||||
| TAIR|locus:2062709 | 500 | AT2G41640 [Arabidopsis thalian | 0.455 | 0.498 | 0.630 | 2.9e-159 | |
| TAIR|locus:2082598 | 504 | AT3G57380 [Arabidopsis thalian | 0.462 | 0.501 | 0.634 | 1.3e-156 | |
| TAIR|locus:2076274 | 494 | AT3G10320 [Arabidopsis thalian | 0.661 | 0.732 | 0.638 | 2.6e-127 | |
| TAIR|locus:2063793 | 452 | AT2G03370 [Arabidopsis thalian | 0.307 | 0.371 | 0.438 | 9.7e-72 | |
| TAIR|locus:2063809 | 455 | AT2G03360 [Arabidopsis thalian | 0.301 | 0.362 | 0.416 | 1.1e-70 | |
| TAIR|locus:2092757 | 384 | AT3G18170 [Arabidopsis thalian | 0.301 | 0.429 | 0.380 | 1.3e-57 | |
| TAIR|locus:2092762 | 470 | AT3G18180 [Arabidopsis thalian | 0.310 | 0.361 | 0.375 | 4.2e-28 | |
| UNIPROTKB|F1SFQ3 | 527 | EOGT "Uncharacterized protein" | 0.246 | 0.256 | 0.288 | 2.6e-11 | |
| UNIPROTKB|Q5NDL9 | 527 | EOGT "EGF domain-specific O-li | 0.268 | 0.278 | 0.25 | 7e-10 | |
| WB|WBGene00010386 | 523 | H12D21.10 [Caenorhabditis eleg | 0.303 | 0.317 | 0.247 | 4.7e-08 |
| TAIR|locus:2062709 AT2G41640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 2.9e-159, Sum P(2) = 2.9e-159
Identities = 169/268 (63%), Positives = 206/268 (76%)
Query: 80 CTFILTPH------ALSLFYSFGAEDEGLVAAD-VNAPLCSSISNGTICCDRSGIRTDVC 132
C F+L+P+ LSL SF E EGL + + V PLCS ISNGTICCDR+G+R+D+C
Sbjct: 52 CCFVLSPYYLFGFSTLSLLDSFRREIEGLSSYEPVITPLCSEISNGTICCDRTGLRSDIC 111
Query: 133 IMKGDVRTNSASSSIFLYKNTNGFINYVSSMVEEKELQHEKIRPYTRKWETSVMDTIDEL 192
+MKGDVRTNSASSSIFL+ ++ + EKI+PYTRKWETSVMDT+ EL
Sbjct: 112 VMKGDVRTNSASSSIFLFTSSTN-----------NNTKPEKIKPYTRKWETSVMDTVQEL 160
Query: 193 DLVVKKENETANHHCDVVHDVPAVFFSTGGYTGNVYHEFNDGILPLYITSQHLKKKVVFV 252
+L+ K N++++ CDV HDVPAVFFSTGGYTGNVYHEFNDGI+PL+ITSQH KKVVFV
Sbjct: 161 NLITKDSNKSSDRVCDVYHDVPAVFFSTGGYTGNVYHEFNDGIIPLFITSQHYNKKVVFV 220
Query: 253 ILEYHNWWIMKYGDILSRLSDYPPIDFSGDKRTHCFPEAIVGLRIHDELTVDPSLMRGNK 312
I+EYH+WW MKYGD++S+LSDYP +DF+GD RTHCF EA VGLRIHDELTV+ SL+ GN+
Sbjct: 221 IVEYHDWWEMKYGDVVSQLSDYPLVDFNGDTRTHCFKEATVGLRIHDELTVNSSLVIGNQ 280
Query: 313 NAIDFRNVLDQAYWPRIRGLIQDEEREA 340
+DFRNVLD+ Y RI+ L Q EE EA
Sbjct: 281 TIVDFRNVLDRGYSHRIQSLTQ-EETEA 307
|
|
| TAIR|locus:2082598 AT3G57380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2076274 AT3G10320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2063793 AT2G03370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2063809 AT2G03360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2092757 AT3G18170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2092762 AT3G18180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SFQ3 EOGT "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5NDL9 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00010386 H12D21.10 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 547 | |||
| pfam04577 | 206 | pfam04577, DUF563, Protein of unknown function (DU | 4e-16 | |
| COG4421 | 368 | COG4421, COG4421, Capsular polysaccharide biosynth | 5e-04 |
| >gnl|CDD|218156 pfam04577, DUF563, Protein of unknown function (DUF563) | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 4e-16
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 365 SKKPKLVILSR--NGSRAITNENSLVKMAEDIGFQVQVVRPDRTS--ELAKIYRALNSSD 420
KP+ V +SR G R I NE+ L + GF++ V P+ S E K++ S+
Sbjct: 99 KIKPRKVYISRKKAGRRRILNEDELEEALPKYGFEI--VDPETLSLEEQVKLFS---SAK 153
Query: 421 VMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYIGYT 473
V+VG HG+A+T+ +FM PG+ ++++P + + A LGL Y
Sbjct: 154 VIVGPHGSALTNLIFMPPGTGVVELVPPNR---LDPSFRNLAALLGLDYYYVY 203
|
Family of uncharacterized proteins. Length = 206 |
| >gnl|CDD|226845 COG4421, COG4421, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 547 | |||
| KOG4698 | 475 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF04577 | 206 | DUF563: Protein of unknown function (DUF563); Inte | 99.95 | |
| COG4421 | 368 | Capsular polysaccharide biosynthesis protein [Carb | 99.7 |
| >KOG4698 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-83 Score=675.16 Aligned_cols=443 Identities=46% Similarity=0.737 Sum_probs=391.2
Q ss_pred cCCCCcccccchHHHHHHHHHHhHhhcccchh------hhhhccCcccccccc-cccCCCCCcCCCCCceeecCCCCCcc
Q 008963 58 KRSSSTTSRTKLLSLLLLSLLSCTFILTPHAL------SLFYSFGAEDEGLVA-ADVNAPLCSSISNGTICCDRSGIRTD 130 (547)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Cd~s~~r~d 130 (547)
|+...+...|+..+-=+++++.+|++..|..+ ..+....++.++... +....++|+..+++.++||+++.++|
T Consensus 17 ~~~~~~~~~~~~f~~~~~~vl~~~~v~kp~~l~~~~~~~~~~tg~~~~~~~~~~~~~~q~~~~~~e~~~~~C~~~g~~s~ 96 (475)
T KOG4698|consen 17 KKNLLGLLIYGVFHSSLLSVLPKCVVVKPYLLLLPRFQPDLPTGSFEDELLPLSQLLRQPPGSALEDSSFFCDRSGTRSD 96 (475)
T ss_pred hhcCccceecCcchhhhhhhcccceecCCeecccCccccCcccceeeccCCChhhcccCCCCcccCCceEEeeccccccc
Confidence 33334444455544447788888999888773 222222355554444 45557899999999999999999999
Q ss_pred eeEEeCcEEeeCCCceEEEEecCCCcccccccchhhcccceeeecCCCCCCcccccCccceeEEEeccCCCcCCCCCcee
Q 008963 131 VCIMKGDVRTNSASSSIFLYKNTNGFINYVSSMVEEKELQHEKIRPYTRKWETSVMDTIDELDLVVKKENETANHHCDVV 210 (547)
Q Consensus 131 ~C~~~GdvR~~~~~~tv~l~~~~~~~~~~~~~~~~~~~~~~~~irPY~RK~e~~~m~~v~Evtv~~~~~~~~~~p~C~v~ 210 (547)
+|+|+||+|+|+.++|+++....-- ++-.+.+|+||||+||||..+|..|+|+++...+.+ ...+|+++
T Consensus 97 ~c~~kg~~r~h~~~~~~~~~~~~~~---------~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~--~~r~c~v~ 165 (475)
T KOG4698|consen 97 FCEMKGDVRTHPDSSTVLLTLGRLL---------TFSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGS--EIRRCDVN 165 (475)
T ss_pred hhhhcCccccCcchhhhhhhccchh---------hhccccchhcccccccccccccccccccceEEcCCc--ccceeeee
Confidence 9999999999999999987765311 011357999999999999999999999999988743 46789999
Q ss_pred eecceEEEEcCCccccccchhhhhhhhHHHHHh--hhCCeeEEEEEcccchhhccHHHHHhhcCCCCCcccCCCCcceec
Q 008963 211 HDVPAVFFSTGGYTGNVYHEFNDGILPLYITSQ--HLKKKVVFVILEYHNWWIMKYGDILSRLSDYPPIDFSGDKRTHCF 288 (547)
Q Consensus 211 h~~Pavvfs~gGytgN~fH~f~D~liPLfiT~~--~f~~eVq~vv~d~~~ww~~kY~~ll~~LS~y~vIdl~~d~~v~CF 288 (547)
|++||+||++|||+||.||+|+|+++|||+|.+ .|+++||+|+++.++||+.||.+++++||+||+++++++..+|||
T Consensus 166 ~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~~~~ThcF 245 (475)
T KOG4698|consen 166 HEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDAELRTHCF 245 (475)
T ss_pred cccchheeecCCcchhhHHHHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecCCceEEEe
Confidence 999999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred CeeEEccccccccccCCCCCCCC--cchHHHHHHHHHhhccccccccchHHHHHHHhccCCCCCCCCCCccccccCCCCC
Q 008963 289 PEAIVGLRIHDELTVDPSLMRGN--KNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSK 366 (547)
Q Consensus 289 ~~aiVGL~~h~~L~idp~~~p~~--~si~dFr~FLr~ay~~r~~~L~~~~~r~~~~~l~i~ps~~~~~~~~~~~~~~~~~ 366 (547)
.+++|||..|.++++||...+++ ++|.+|++||+.+|++|+... +++ .....+
T Consensus 246 ~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~------------~~t-------------~~~~~k 300 (475)
T KOG4698|consen 246 KEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEA------------NVT-------------APEPWK 300 (475)
T ss_pred eeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhccccccc------------ccC-------------CcChhh
Confidence 99999999999999999998866 899999999999998775311 100 123456
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEe
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVI 446 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~vIEI~ 446 (547)
+||+++++|.++|.|+|++||.+++++.||+|.+++++. .++.+|+++.+++|||||||||||||++|+||++++|||.
T Consensus 301 kpri~~lsR~~~r~Ilne~el~~~~~~~gf~v~~~~~~~-t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~ 379 (475)
T KOG4698|consen 301 KPRITILSRAGSRAILNEDELPRMLEDIGFEVSVLRPDR-TEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIY 379 (475)
T ss_pred CCceEEEecccchhhhcchhhhHHHHhCCCceEEecccc-cchhhhhheeeccceeeeccCccceeEEecCCcceEEEEE
Confidence 899999999999999999999999999999999999854 9999999999999999999999999999999999999999
Q ss_pred cCC-CCccccchHHHHHhhcCCeEEEEEecCCCCcccccCCCCCCccCCCCcccccCcceee-eeecCCccEEEehHHHH
Q 008963 447 PLG-TDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSVNEKGWQYTK-TIYLDGQNVRLNLRRFQ 524 (547)
Q Consensus 447 P~g-~~~~~~~~Y~~lA~~~Gl~Y~~y~i~~eEssL~~~y~~dhpv~~dP~~i~~kgW~~~~-~~YL~~QnV~lDi~rF~ 524 (547)
|+| .+|.+..+|..+|+.|+++|.+|+|.++|++|+++|++||+++.||.+..++||+..+ .+||..|+|++|+.||+
T Consensus 380 pcg~~~w~a~~a~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~ 459 (475)
T KOG4698|consen 380 PCGDPGWAAKLARLRPAKYMTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFR 459 (475)
T ss_pred ECCCccchhhhhhccccceeccccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcc
Confidence 999 8999999999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 008963 525 KRLVRAYDYSINR 537 (547)
Q Consensus 525 ~~L~~A~~~l~~~ 537 (547)
+.+.+|++..+.+
T Consensus 460 ~~~~~a~~~~~~~ 472 (475)
T KOG4698|consen 460 KTLVKAYLKEITQ 472 (475)
T ss_pred cchhHHHHHHHHh
Confidence 9999999887765
|
|
| >PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61 | Back alignment and domain information |
|---|
| >COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 547 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 9e-07
Identities = 76/483 (15%), Positives = 151/483 (31%), Gaps = 130/483 (26%)
Query: 181 WETSVMDTIDELDLV-VKKENETANHHCDVVHDVPAVFFSTGGYTGNVYHEFND--GILP 237
+ET + D++ V ++ N C V D+P S ++ + G L
Sbjct: 9 FETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLR 66
Query: 238 LYITSQHLKKKVV--FV--ILEYHNWWIM---------------KYGDILSRLSDYPPID 278
L+ T ++++V FV +L + ++M Y + RL + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV- 125
Query: 279 FSGDKRTHCFPEAIVGLRIH-DELTVDPSL----MRGN-K-----NAIDFRNVL----DQ 323
F+ K + + LR EL ++ + G+ K + V +
Sbjct: 126 FA--KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 324 AYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSKKPKLVILSRNG--SRAI 381
+W + E L DP++ + + D S KL I S R +
Sbjct: 184 IFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTS----RSDHSSNIKLRIHSIQAELRRLL 238
Query: 382 TNE---NSL-----VKMAEDI---GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAM 430
++ N L V+ A+ +++ R ++ A ++ + + H +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 431 THF----LFMK---------PGSVFIQVIPLGTDWAAETYYGEPAR-------------- 463
T L +K P V + P AE+ A
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 464 --KLGLK----------YIGYTILPRE--------SSLYDQYDKNDPV-----LRDPSSV 498
+ L + ++ P S ++ K+D + L S V
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 499 NEKGWQYTKTI---YLDGQNVRLNLRRFQKRLVRAYD----YSINRISQNC--------- 542
++ + T +I YL+ + N + +V Y+ + + +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 543 -HH 544
HH
Sbjct: 478 GHH 480
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 547 | |||
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 81.38 |
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=81.38 E-value=3.8 Score=33.96 Aligned_cols=91 Identities=14% Similarity=0.213 Sum_probs=65.2
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhc--cCCCcEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLF--MKPGSVFIQ 444 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lF--mppga~vIE 444 (547)
|||+++ .+ .+ .+++++.+++. |+|+....+..++-+|.++.+.++|++|...+..++.-+| +|++=.+|-
T Consensus 1 K~kVli-t~----~~--~~~~~~~l~~~-~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~ 72 (129)
T d1gdha2 1 KKKILI-TW----PL--PEAAMARARES-YDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCIS 72 (129)
T ss_dssp CCEEEE-SS----CC--CHHHHHHHHTT-SEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEE
T ss_pred CCEEEE-eC----CC--CHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeee
Confidence 577764 32 22 44677788765 5877655445688999999999999998888888999888 566777887
Q ss_pred EecCCCCccccchHHHHHhhcCCeE
Q 008963 445 VIPLGTDWAAETYYGEPARKLGLKY 469 (547)
Q Consensus 445 I~P~g~~~~~~~~Y~~lA~~~Gl~Y 469 (547)
-+.-|+++.. -..|+..|+.-
T Consensus 73 ~~gvG~d~ID----~~~a~~~gI~V 93 (129)
T d1gdha2 73 TYSIGFDHID----LDACKARGIKV 93 (129)
T ss_dssp EESSCCTTBC----HHHHHHTTCEE
T ss_pred ecccCCcccc----HHHHHhCCCEE
Confidence 7777765443 24566677764
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