Citrus Sinensis ID: 008970

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
MAMASTVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPLIR
cccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHcccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccEEccHHHHHHHHHHHHHHHHHHHHcc
ccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHccccccccccccccccEEEccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccEccccHHEEEHHHHHHcccccccEcHHHHHHHHHHHHHHHHHHHHHHHc
MAMASTVKVVLGSIAFAIFWVMAvfpavpflpigrtAGSLLGAMLMVIFQVItpdqayaaidlpiLGLLFGTMVVSVYLESADMFKYLGRMlswksrgpkdlLCRICLISAISsalftndtscVVLTEFVLKIArqhnlpphpFLLALASsanigssatpignpqNLVIAVQskipfgkfliGILPAMFVGVAVNALILLTMYWKLLNshkdeedataevvaeedvtshrfspatmshftsLNSQEWNSRLesmslqnspnvngngshaetLRNRTSlveneinrvssgtfesaritneskevstdggsqrreetvpsrgigSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFkdarpsleKVSYSLLIFFCGMFitvdgfnktgipsalwefmepyaeidhvGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEqahraphlgytlsfwnhlkfgvpsTLIVTAIGLPLIR
MAMASTVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRnrtslveneinrvssgtfesaritneskevstdggsqrreetvpsrgigsviTLVNVLLRQLsrgkeslssewkrvLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPLIR
MAMASTVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKdeedataevvaeedvtSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITaalalvvlDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVaasaaaisaaDEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPLIR
*****TVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLN***************************************************************************************************************GIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL**
******VKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLL*********************************************************************************************KEVSTDG***********RGIGSVITLVNVLLRQ********SSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPLIR
********VVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHK*****************HRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITN*******************SRGIGSVITLVNVLLRQLSR********WKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPLIR
****STVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESAR*******************TVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPLIR
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
ooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
ooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
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SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAMASTVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPLIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query547 2.2.26 [Sep-21-2011]
Q54GU0563 Putative transporter arsB yes no 0.855 0.831 0.314 2e-64
Q62052833 P protein OS=Mus musculus yes no 0.776 0.510 0.245 1e-18
P0A607429 Uncharacterized transport yes no 0.345 0.440 0.272 3e-14
P0A606429 Uncharacterized transport yes no 0.345 0.440 0.272 3e-14
Q04671838 P protein OS=Homo sapiens yes no 0.319 0.208 0.300 7e-13
O07187428 Uncharacterized transport no no 0.340 0.434 0.288 1e-12
Q8MIQ9845 P protein OS=Sus scrofa G yes no 0.416 0.269 0.279 2e-12
P46838429 46 kDa membrane protein O yes no 0.303 0.386 0.284 3e-11
P75788372 Inner membrane protein Yb N/A no 0.179 0.263 0.289 4e-08
Q57898352 Uncharacterized transport yes no 0.248 0.386 0.288 7e-07
>sp|Q54GU0|ARSB_DICDI Putative transporter arsB OS=Dictyostelium discoideum GN=arsB PE=2 SV=1 Back     alignment and function desciption
 Score =  247 bits (631), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 170/541 (31%), Positives = 275/541 (50%), Gaps = 73/541 (13%)

Query: 31  LPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGR 90
           LPIGR   S++GA LMV F +I P +  + I+   + LL   M++S Y+E A+++    +
Sbjct: 66  LPIGRAGSSIIGATLMVYFGIIQPKEIGSVINWDTIILLMSMMMLSNYMEQANIWGMASK 125

Query: 91  MLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALAS 150
           +L WK +     + R+CLIS+I S++ TNDT CV LT  V+   +  NL   PFL+A+A+
Sbjct: 126 ILLWKCKSTSIFMVRVCLISSIMSSILTNDTVCVTLTPIVISACKSTNLTFFPFLMAIAT 185

Query: 151 SANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMY---WKLL 207
           SANIGSSA P+GNPQN++IA    + F  F    + +  +GV +N ++LL  +    K L
Sbjct: 186 SANIGSSALPVGNPQNMIIATAGGLNFFNFFKVSIVSSILGVCLNTILLLLYFKKDLKNL 245

Query: 208 NSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSR-LESMSLQNSPNVNGN- 265
           NS+ ++   T     EE   +H             N+Q  N + +E+++ +     + N 
Sbjct: 246 NSNFNQLIETVNPKVEEIDNNHHDDDGA-------NNQSKNEKEMENINKEVEEEQHNND 298

Query: 266 ----------------GSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGS 309
                           G HA  L   +         + S       I N+ K        
Sbjct: 299 DDDDDGFNENKNNNNNGGHAILLVASS---------MDSIDLSDCSIINKDK-------- 341

Query: 310 QRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMG 369
           +++E              + +      +  E++ +  K + +     ++TL +L+   +G
Sbjct: 342 KKKE------------NFIEIYFNSKEKSIETIVNIIKLIFKFRVAIILTL-VLIGFFIG 388

Query: 370 LNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFM 429
           ++M +T +     L++ + KD    +  V + LL+FF G+F+ V+GF++     A W  +
Sbjct: 389 MHMGFTVLFGVSILMICERKDITDIINSVDWELLLFFSGLFVLVEGFDRQFEKEA-WTIL 447

Query: 430 EPYAEID----HVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWL 485
           EP+  ID    +V  I + + +ILVL N+  NVP VL L  R+  + A          W+
Sbjct: 448 EPFVPIDSTHLNVLKIFIFSILILVLCNILGNVPLVLSLSPRLLEALAP------DFTWI 501

Query: 486 ILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL 545
           +LA+VSTVAGNL+LVGS ANLIV E++     +G    F  +LKFGVPST++V  IG+P+
Sbjct: 502 LLAFVSTVAGNLTLVGSVANLIVAEKSKSYHEIG----FLEYLKFGVPSTILVILIGVPI 557

Query: 546 I 546
           +
Sbjct: 558 V 558

Dictyostelium discoideum (taxid: 44689)
>sp|Q62052|P_MOUSE P protein OS=Mus musculus GN=Oca2 PE=1 SV=1 Back     alignment and function description
>sp|P0A607|Y2703_MYCBO Uncharacterized transporter Mb2703 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2703 PE=3 SV=1 Back     alignment and function description
>sp|P0A606|Y2684_MYCTU Uncharacterized transporter Rv2684/MT2758 OS=Mycobacterium tuberculosis GN=Rv2684 PE=3 SV=1 Back     alignment and function description
>sp|Q04671|P_HUMAN P protein OS=Homo sapiens GN=OCA2 PE=1 SV=2 Back     alignment and function description
>sp|O07187|Y2685_MYCTU Uncharacterized transporter Rv2685/MT2759 OS=Mycobacterium tuberculosis GN=Rv2685 PE=3 SV=1 Back     alignment and function description
>sp|Q8MIQ9|P_PIG P protein OS=Sus scrofa GN=Oca2 PE=2 SV=3 Back     alignment and function description
>sp|P46838|AG45_MYCLE 46 kDa membrane protein OS=Mycobacterium leprae (strain TN) GN=ag45 PE=3 SV=2 Back     alignment and function description
>sp|P75788|YBIR_ECOLI Inner membrane protein YbiR OS=Escherichia coli (strain K12) GN=ybiR PE=1 SV=1 Back     alignment and function description
>sp|Q57898|Y456_METJA Uncharacterized transporter MJ0456 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0456 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
255545230564 arsenite transport protein, putative [Ri 1.0 0.969 0.781 0.0
225464519549 PREDICTED: putative transporter arsB iso 0.998 0.994 0.774 0.0
449485519547 PREDICTED: putative transporter arsB-lik 0.994 0.994 0.734 0.0
449446019547 PREDICTED: putative transporter arsB-lik 0.994 0.994 0.734 0.0
356535849534 PREDICTED: putative transporter arsB-lik 0.976 1.0 0.747 0.0
357515047544 Transporter, putative [Medicago truncatu 0.987 0.992 0.745 0.0
327187684549 silicon efflux transporter CmLsi2-1 [Cuc 0.994 0.990 0.730 0.0
327187686529 silicon efflux transporter CmLsi2-2 [Cuc 0.963 0.996 0.726 0.0
356530842538 PREDICTED: putative transporter arsB-lik 0.979 0.996 0.723 0.0
359474003569 PREDICTED: putative transporter arsB iso 1.0 0.961 0.711 0.0
>gi|255545230|ref|XP_002513676.1| arsenite transport protein, putative [Ricinus communis] gi|223547584|gb|EEF49079.1| arsenite transport protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/564 (78%), Positives = 493/564 (87%), Gaps = 17/564 (3%)

Query: 1   MAMASTVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAA 60
           MA+AST KVVLGSIAFAIFW++AVFPAVPFLP+GRTAGSLLGAMLMVIFQV+TPDQAYAA
Sbjct: 1   MALASTPKVVLGSIAFAIFWILAVFPAVPFLPVGRTAGSLLGAMLMVIFQVLTPDQAYAA 60

Query: 61  IDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTND 120
           IDLPILGLLFGTMVVSVYLE ADMFKYLG++LSWKS+GPKDLLCRICLISAISSALFTND
Sbjct: 61  IDLPILGLLFGTMVVSVYLERADMFKYLGKLLSWKSKGPKDLLCRICLISAISSALFTND 120

Query: 121 TSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKF 180
           TSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSK+ FGKF
Sbjct: 121 TSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKLSFGKF 180

Query: 181 LIGILPAMFVGVAVNALILLTMYWKLLNS-HKDEEDATAEVVAEEDVTSHRFSPATMSHF 239
           L G+LPAM VG+ VN   L+ MYW+LL+S  KDEEDAT+EVVA++DV+ HRFSPATMSH 
Sbjct: 181 LFGVLPAMLVGIVVNITALMFMYWRLLSSTQKDEEDATSEVVADDDVSFHRFSPATMSHS 240

Query: 240 TSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNE 299
            SLNSQE N RLES+++Q+SPN+NG  ++AETLRNR +  ENEI+ VS  T+ESAR +N 
Sbjct: 241 ASLNSQEGNFRLESVNMQSSPNMNGQINYAETLRNRINPAENEIHSVSCSTYESARSSNA 300

Query: 300 SKEVSTDGGSQRREET-VPSR---------------GIGSVITLVNVLLRQLSRGKESLS 343
           SKEV+ DG SQRRE+T +P R                + S+  L +    QL  GK   S
Sbjct: 301 SKEVTADGSSQRREDTALPKRIASMDWLKAASMDRLRVPSMDRLKDASAEQLPGGKGDFS 360

Query: 344 SEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLL 403
           ++WKR+L KSCVYLIT+ MLV+LLMGLNMSW+AITAALALVVLDFKDARP LEKVSYSLL
Sbjct: 361 TKWKRMLWKSCVYLITIAMLVALLMGLNMSWSAITAALALVVLDFKDARPCLEKVSYSLL 420

Query: 404 IFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLL 463
           IFFCGMFITVDGFNKTGIPSALW+FMEP+A+ID+  GI+VLA VILVLSNLASNVPTVLL
Sbjct: 421 IFFCGMFITVDGFNKTGIPSALWDFMEPHAKIDNAAGISVLAGVILVLSNLASNVPTVLL 480

Query: 464 LGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLS 523
           LGGR+AASAAAISAADEKKAWL+LAWVSTVAGNLSL+GSAANLIVCEQA RAP LGY L+
Sbjct: 481 LGGRIAASAAAISAADEKKAWLVLAWVSTVAGNLSLLGSAANLIVCEQARRAPQLGYNLT 540

Query: 524 FWNHLKFGVPSTLIVTAIGLPLIR 547
           FW HLKFGVPST+IVTA+GL LIR
Sbjct: 541 FWKHLKFGVPSTVIVTAVGLILIR 564

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225464519|ref|XP_002270615.1| PREDICTED: putative transporter arsB isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449485519|ref|XP_004157196.1| PREDICTED: putative transporter arsB-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449446019|ref|XP_004140769.1| PREDICTED: putative transporter arsB-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356535849|ref|XP_003536455.1| PREDICTED: putative transporter arsB-like [Glycine max] Back     alignment and taxonomy information
>gi|357515047|ref|XP_003627812.1| Transporter, putative [Medicago truncatula] gi|92885111|gb|ABE87631.1| transporter, putative [Medicago truncatula] gi|355521834|gb|AET02288.1| Transporter, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|327187684|dbj|BAK09177.1| silicon efflux transporter CmLsi2-1 [Cucurbita moschata] Back     alignment and taxonomy information
>gi|327187686|dbj|BAK09178.1| silicon efflux transporter CmLsi2-2 [Cucurbita moschata] Back     alignment and taxonomy information
>gi|356530842|ref|XP_003533988.1| PREDICTED: putative transporter arsB-like [Glycine max] Back     alignment and taxonomy information
>gi|359474003|ref|XP_002276077.2| PREDICTED: putative transporter arsB isoform 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
TAIR|locus:2204858502 AT1G02260 "AT1G02260" [Arabido 0.517 0.563 0.667 4e-177
DICTYBASE|DDB_G0289879563 arsB "arsenite transport subun 0.318 0.309 0.417 3.9e-61
TIGR_CMR|CHY_2020423 CHY_2020 "arsenic transporter 0.347 0.449 0.341 2e-29
TIGR_CMR|CHY_1321425 CHY_1321 "arsenic transporter 0.347 0.447 0.279 5.4e-26
TIGR_CMR|CHY_2019425 CHY_2019 "arsenic transporter 0.351 0.451 0.284 4.1e-25
TIGR_CMR|BA_5143444 BA_5143 "arsenical pump family 0.371 0.457 0.315 2.4e-24
RGD|1559691842 LOC308670 "Dnmt3a-ps2 pseudoge 0.413 0.268 0.267 1.1e-21
RGD|2318412842 LOC100365773 "pink-eyed diluti 0.413 0.268 0.267 1.1e-21
UNIPROTKB|Q04671838 OCA2 "P protein" [Homo sapiens 0.404 0.263 0.279 2.4e-21
UNIPROTKB|Q8MIQ9845 Oca2 "P protein" [Sus scrofa ( 0.414 0.268 0.282 3.8e-21
TAIR|locus:2204858 AT1G02260 "AT1G02260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 978 (349.3 bits), Expect = 4.0e-177, Sum P(2) = 4.0e-177
 Identities = 195/292 (66%), Positives = 231/292 (79%)

Query:     1 MAMASTVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAA 60
             MAMA  +K+VLGS+AFAIFW++AVFP+VPFLPIGRTAGSL GAMLMVIFQVITP+QAYAA
Sbjct:     1 MAMAPVIKLVLGSVAFAIFWILAVFPSVPFLPIGRTAGSLFGAMLMVIFQVITPEQAYAA 60

Query:    61 IDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTND 120
             IDLPILGLLFGTMVVS+YLE ADMFKYLG +LSWKSRGPKDLLCR+CL+SA+SSALFTND
Sbjct:    61 IDLPILGLLFGTMVVSIYLERADMFKYLGTLLSWKSRGPKDLLCRVCLVSAVSSALFTND 120

Query:   121 TSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKF 180
             TSCVVLTEFVLKIARQ NLPPHPFLLALA+SANIGSSATPIGNPQNLVIAVQSKIPF +F
Sbjct:   121 TSCVVLTEFVLKIARQKNLPPHPFLLALATSANIGSSATPIGNPQNLVIAVQSKIPFWEF 180

Query:   181 LIGILPAMFVGVAVNALILLTMYWKLLNSHKXXXXXXXXXXXXXXXX----SHRFSPATM 236
             L+G+ PAM VG+ VNA++LL MYW+LL+ HK                    SHRFSPAT 
Sbjct:   181 LLGVFPAMIVGITVNAMLLLGMYWRLLSDHKEDEEEVQNADSEVVAQEDVQSHRFSPAT- 239

Query:   237 SHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSS 288
               F+ ++S++ N R+++   +   N  G+   +E +   ++    + N   S
Sbjct:   240 --FSPVSSEDSNLRMDAA--ETLRNRAGSAGESELISCNSNASREQHNDAES 287
GO:0005215 "transporter activity" evidence=ISS
GO:0015137 "citrate transmembrane transporter activity" evidence=IEA
GO:0015746 "citrate transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
DICTYBASE|DDB_G0289879 arsB "arsenite transport subunit B" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2020 CHY_2020 "arsenic transporter family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1321 CHY_1321 "arsenic transporter family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2019 CHY_2019 "arsenic transporter family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5143 BA_5143 "arsenical pump family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
RGD|1559691 LOC308670 "Dnmt3a-ps2 pseudogene" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|2318412 LOC100365773 "pink-eyed dilution-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q04671 OCA2 "P protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8MIQ9 Oca2 "P protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54GU0ARSB_DICDINo assigned EC number0.31420.85550.8312yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
PLN00136482 PLN00136, PLN00136, silicon transporter; Provision 1e-105
PLN00136482 PLN00136, PLN00136, silicon transporter; Provision 2e-94
cd01117384 cd01117, YbiR_permease, Putative anion permease Yb 5e-61
cd01117384 cd01117, YbiR_permease, Putative anion permease Yb 4e-52
pfam03600377 pfam03600, CitMHS, Citrate transporter 5e-41
cd00625396 cd00625, ArsB_NhaD_permease, Anion permease ArsB/N 1e-40
cd00625396 cd00625, ArsB_NhaD_permease, Anion permease ArsB/N 8e-31
COG1055424 COG1055, ArsB, Na+/H+ antiporter NhaD and related 1e-29
pfam03600377 pfam03600, CitMHS, Citrate transporter 3e-27
cd01116413 cd01116, P_permease, Permease P (pink-eyed dilutio 5e-25
COG1055424 COG1055, ArsB, Na+/H+ antiporter NhaD and related 9e-22
cd01118416 cd01118, ArsB_permease, Anion permease ArsB 9e-16
cd01116413 cd01116, P_permease, Permease P (pink-eyed dilutio 1e-14
cd01115382 cd01115, SLC13_permease, Permease SLC13 (solute ca 1e-13
cd01116413 cd01116, P_permease, Permease P (pink-eyed dilutio 2e-11
cd01115382 cd01115, SLC13_permease, Permease SLC13 (solute ca 3e-10
cd00625396 cd00625, ArsB_NhaD_permease, Anion permease ArsB/N 4e-10
cd01118416 cd01118, ArsB_permease, Anion permease ArsB 7e-10
COG0471461 COG0471, CitT, Di- and tricarboxylate transporters 3e-08
COG1055424 COG1055, ArsB, Na+/H+ antiporter NhaD and related 5e-08
cd01115 382 cd01115, SLC13_permease, Permease SLC13 (solute ca 3e-06
COG0471461 COG0471, CitT, Di- and tricarboxylate transporters 2e-05
cd00625 396 cd00625, ArsB_NhaD_permease, Anion permease ArsB/N 8e-05
COG0471461 COG0471, CitT, Di- and tricarboxylate transporters 1e-04
PLN00137424 PLN00137, PLN00137, NHAD transporter family protei 1e-04
pfam02040423 pfam02040, ArsB, Arsenical pump membrane protein 2e-04
cd01115382 cd01115, SLC13_permease, Permease SLC13 (solute ca 0.004
>gnl|CDD|215070 PLN00136, PLN00136, silicon transporter; Provisional Back     alignment and domain information 
 Score =  324 bits (831), Expect = e-105
 Identities = 152/229 (66%), Positives = 190/229 (82%)

Query: 1   MAMASTVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAA 60
           MA+AS  KVVLGS+AF +FW++AVFP+VPFLPIGRTAG+LL A+LM++F VI+PD AYA+
Sbjct: 1   MALASLPKVVLGSLAFGVFWMLAVFPSVPFLPIGRTAGALLSAVLMIVFHVISPDDAYAS 60

Query: 61  IDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTND 120
           IDLPILGLLF TMVV  YL++A MFK+LGR+L+W+S+G +DLLCR+C+++A++SALFTND
Sbjct: 61  IDLPILGLLFATMVVGSYLKNAGMFKHLGRLLAWRSQGGRDLLCRVCVVTALASALFTND 120

Query: 121 TSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKF 180
           T CVVLTEFVL++A + NLP  PFLLALASSANIGSSATPIGNPQNLVIA  SKI F KF
Sbjct: 121 TCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATPIGNPQNLVIAFNSKITFPKF 180

Query: 181 LIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSH 229
           L+GILPAM  G+AVN ++LL MYWK L+   +      ++ A E+  S 
Sbjct: 181 LLGILPAMLAGMAVNMVMLLCMYWKDLDGGAELSVDGKQMEAVEEGRSP 229

Length = 482
>gnl|CDD|215070 PLN00136, PLN00136, silicon transporter; Provisional Back     alignment and domain information
>gnl|CDD|238537 cd01117, YbiR_permease, Putative anion permease YbiR Back     alignment and domain information
>gnl|CDD|238537 cd01117, YbiR_permease, Putative anion permease YbiR Back     alignment and domain information
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter Back     alignment and domain information
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD Back     alignment and domain information
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD Back     alignment and domain information
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter Back     alignment and domain information
>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution) Back     alignment and domain information
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238538 cd01118, ArsB_permease, Anion permease ArsB Back     alignment and domain information
>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution) Back     alignment and domain information
>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13) Back     alignment and domain information
>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution) Back     alignment and domain information
>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13) Back     alignment and domain information
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD Back     alignment and domain information
>gnl|CDD|238538 cd01118, ArsB_permease, Anion permease ArsB Back     alignment and domain information
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13) Back     alignment and domain information
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD Back     alignment and domain information
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|215071 PLN00137, PLN00137, NHAD transporter family protein; Provisional Back     alignment and domain information
>gnl|CDD|110986 pfam02040, ArsB, Arsenical pump membrane protein Back     alignment and domain information
>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 547
PLN00136482 silicon transporter; Provisional 100.0
KOG2639685 consensus Sodium sulfate symporter and related ars 100.0
COG1055424 ArsB Na+/H+ antiporter NhaD and related arsenite p 100.0
PRK15445427 arsenical pump membrane protein; Provisional 100.0
cd01118416 ArsB_permease Anion permease ArsB. These permeases 100.0
PF02040423 ArsB: Arsenical pump membrane protein; InterPro: I 100.0
PLN00137424 NHAD transporter family protein; Provisional 100.0
TIGR00935429 2a45 arsenical pump membrane protein. 100.0
TIGR00775420 NhaD Na+/H+ antiporter, NhaD family. These protein 100.0
cd01117384 YbiR_permease Putative anion permease YbiR. Based 100.0
PRK09547513 nhaB sodium/proton antiporter; Reviewed 100.0
cd01116413 P_permease Permease P (pink-eyed dilution). Mutati 100.0
TIGR00785444 dass anion transporter. Functionally characterized 100.0
cd00625396 ArsB_NhaD_permease Anion permease ArsB/NhaD. These 100.0
TIGR00774515 NhaB Na+/H+ antiporter NhaB. These proteins are me 100.0
cd01115382 SLC13_permease Permease SLC13 (solute carrier 13). 100.0
COG0471461 CitT Di- and tricarboxylate transporters [Inorgani 100.0
PF00939471 Na_sulph_symp: Sodium:sulfate symporter transmembr 100.0
PF03600351 CitMHS: Citrate transporter; InterPro: IPR004680 C 100.0
TIGR00784431 citMHS citrate transporter, CitMHS family. This fa 99.97
KOG1281586 consensus Na+/dicarboxylate, Na+/tricarboxylate an 99.95
cd01116413 P_permease Permease P (pink-eyed dilution). Mutati 99.86
PRK09412433 anaerobic C4-dicarboxylate transporter; Reviewed 99.85
TIGR00786405 dctM TRAP transporter, DctM subunit. force-depende 99.84
cd01115382 SLC13_permease Permease SLC13 (solute carrier 13). 99.84
PLN00136 482 silicon transporter; Provisional 99.84
TIGR00785444 dass anion transporter. Functionally characterized 99.83
PRK15445427 arsenical pump membrane protein; Provisional 99.83
TIGR00935429 2a45 arsenical pump membrane protein. 99.81
COG0471461 CitT Di- and tricarboxylate transporters [Inorgani 99.8
cd01118 416 ArsB_permease Anion permease ArsB. These permeases 99.79
PF00939471 Na_sulph_symp: Sodium:sulfate symporter transmembr 99.78
TIGR00770430 Dcu anaerobic c4-dicarboxylate membrane transporte 99.76
PRK12489443 anaerobic C4-dicarboxylate transporter; Reviewed 99.75
PRK09547513 nhaB sodium/proton antiporter; Reviewed 99.74
COG1055424 ArsB Na+/H+ antiporter NhaD and related arsenite p 99.73
cd01117 384 YbiR_permease Putative anion permease YbiR. Based 99.73
PF03600 351 CitMHS: Citrate transporter; InterPro: IPR004680 C 99.69
cd00625 396 ArsB_NhaD_permease Anion permease ArsB/NhaD. These 99.67
KOG2639685 consensus Sodium sulfate symporter and related ars 99.64
PRK10654455 dcuC C4-dicarboxylate transporter DcuC; Provisiona 99.59
PLN00137424 NHAD transporter family protein; Provisional 99.57
KOG1281586 consensus Na+/dicarboxylate, Na+/tricarboxylate an 99.53
TIGR00775420 NhaD Na+/H+ antiporter, NhaD family. These protein 99.51
TIGR00771388 DcuC c4-dicarboxylate anaerobic carrier family pro 99.48
TIGR00774 515 NhaB Na+/H+ antiporter NhaB. These proteins are me 99.41
TIGR00784431 citMHS citrate transporter, CitMHS family. This fa 99.41
PF02040 423 ArsB: Arsenical pump membrane protein; InterPro: I 99.38
PF03606465 DcuC: C4-dicarboxylate anaerobic carrier; InterPro 99.3
TIGR00786405 dctM TRAP transporter, DctM subunit. force-depende 99.28
COG2851433 CitM H+/citrate symporter [Energy production and c 99.19
TIGR00529387 AF0261 converved hypothetical integral membrane pr 99.18
PRK12489 443 anaerobic C4-dicarboxylate transporter; Reviewed 99.18
TIGR00791440 gntP gluconate transporter. This family includes k 99.15
PRK09412 433 anaerobic C4-dicarboxylate transporter; Reviewed 99.13
PF06450515 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP 99.1
PF07158149 MatC_N: Dicarboxylate carrier protein MatC N-termi 99.07
PRK10654455 dcuC C4-dicarboxylate transporter DcuC; Provisiona 99.03
PF02447441 GntP_permease: GntP family permease; InterPro: IPR 99.02
PRK15060425 L-dehydroascorbate transporter large permease subu 99.01
PF04165385 DUF401: Protein of unknown function (DUF401) ; Int 98.99
PF06808416 DctM: DctM-like transporters; InterPro: IPR010656 98.98
PRK09821454 putative transporter; Provisional 98.97
PRK11588506 hypothetical protein; Provisional 98.97
TIGR00931454 antiport_nhaC Na+/H+ antiporter NhaC. A single mem 98.87
COG3067516 NhaB Na+/H+ antiporter [Inorganic ion transport an 98.87
PRK09921445 permease DsdX; Provisional 98.83
PRK14984438 high-affinity gluconate transporter; Provisional 98.83
PRK10472445 low affinity gluconate transporter; Provisional 98.83
PRK09804455 putative cryptic C4-dicarboxylate transporter DcuD 98.8
PF03605364 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra 98.79
COG1593379 DctQ TRAP-type C4-dicarboxylate transport system, 98.77
TIGR00770 430 Dcu anaerobic c4-dicarboxylate membrane transporte 98.77
TIGR00771388 DcuC c4-dicarboxylate anaerobic carrier family pro 98.73
COG1593379 DctQ TRAP-type C4-dicarboxylate transport system, 98.7
PRK15060425 L-dehydroascorbate transporter large permease subu 98.69
COG1288481 Predicted membrane protein [Function unknown] 98.67
PRK10034447 fructuronate transporter; Provisional 98.65
PF07399438 DUF1504: Protein of unknown function (DUF1504); In 98.64
COG2610442 GntT H+/gluconate symporter and related permeases 98.64
TIGR02123613 TRAP_fused TRAP transporter, 4TM/12TM fusion prote 98.64
COG2704436 DcuB Anaerobic C4-dicarboxylate transporter [Gener 98.44
PF07158149 MatC_N: Dicarboxylate carrier protein MatC N-termi 98.41
PF06808416 DctM: DctM-like transporters; InterPro: IPR010656 98.3
COG2056444 Predicted permease [General function prediction on 98.28
PRK11339508 abgT putative aminobenzoyl-glutamate transporter; 98.23
COG1757485 NhaC Na+/H+ antiporter [Energy production and conv 98.13
TIGR02123613 TRAP_fused TRAP transporter, 4TM/12TM fusion prote 98.1
TIGR00819513 ydaH p-Aminobenzoyl-glutamate transporter family. 98.07
PF02652522 Lactate_perm: L-lactate permease; InterPro: IPR003 98.04
TIGR00931454 antiport_nhaC Na+/H+ antiporter NhaC. A single mem 97.93
PF07854347 DUF1646: Protein of unknown function (DUF1646); In 97.88
PRK09804455 putative cryptic C4-dicarboxylate transporter DcuD 97.84
COG3069451 DcuC C4-dicarboxylate transporter [Energy producti 97.77
PF03553303 Na_H_antiporter: Na+/H+ antiporter family; InterPr 97.72
PF03605 364 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra 97.55
COG1906388 Uncharacterized conserved protein [Function unknow 97.52
TIGR00791 440 gntP gluconate transporter. This family includes k 97.36
TIGR00795530 lctP L-lactate transport. The only characterized m 97.3
COG1757485 NhaC Na+/H+ antiporter [Energy production and conv 97.19
PF03606465 DcuC: C4-dicarboxylate anaerobic carrier; InterPro 97.17
COG3069451 DcuC C4-dicarboxylate transporter [Energy producti 97.07
PRK11588506 hypothetical protein; Provisional 96.91
COG2056444 Predicted permease [General function prediction on 96.82
PRK10420551 L-lactate permease; Provisional 96.73
TIGR00529 387 AF0261 converved hypothetical integral membrane pr 96.68
COG4664447 FcbT3 TRAP-type mannitol/chloroaromatic compound t 96.65
PRK10472 445 low affinity gluconate transporter; Provisional 96.37
PRK09695560 glycolate transporter; Provisional 96.35
COG2851433 CitM H+/citrate symporter [Energy production and c 96.33
PRK10034 447 fructuronate transporter; Provisional 96.06
PF04165385 DUF401: Protein of unknown function (DUF401) ; Int 96.01
PF02447 441 GntP_permease: GntP family permease; InterPro: IPR 95.89
PF02652522 Lactate_perm: L-lactate permease; InterPro: IPR003 95.84
PRK09821 454 putative transporter; Provisional 95.79
PRK14984 438 high-affinity gluconate transporter; Provisional 95.78
PF02667453 SCFA_trans: Short chain fatty acid transporter; In 95.33
PF07854347 DUF1646: Protein of unknown function (DUF1646); In 95.16
TIGR00819513 ydaH p-Aminobenzoyl-glutamate transporter family. 95.07
PF03806502 ABG_transport: AbgT putative transporter family; I 94.99
PRK10420551 L-lactate permease; Provisional 94.96
PRK09695560 glycolate transporter; Provisional 94.96
COG2704 436 DcuB Anaerobic C4-dicarboxylate transporter [Gener 94.82
PRK11339508 abgT putative aminobenzoyl-glutamate transporter; 94.8
PRK09921 445 permease DsdX; Provisional 94.74
TIGR00795530 lctP L-lactate transport. The only characterized m 94.72
COG4664447 FcbT3 TRAP-type mannitol/chloroaromatic compound t 94.6
COG2610 442 GntT H+/gluconate symporter and related permeases 94.47
COG1288481 Predicted membrane protein [Function unknown] 94.11
TIGR00366438 conserved hypothetical integral membrane protein. 93.93
COG1620522 LldP L-lactate permease [Energy production and con 93.34
PF03553303 Na_H_antiporter: Na+/H+ antiporter family; InterPr 92.91
TIGR03802562 Asp_Ala_antiprt aspartate-alanine antiporter. All 91.35
PF06450515 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP 91.31
PF06166308 DUF979: Protein of unknown function (DUF979); Inte 90.57
COG4756367 Predicted cation transporter [General function pre 89.59
TIGR00366438 conserved hypothetical integral membrane protein. 87.61
PF02690142 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR 85.1
PF07399438 DUF1504: Protein of unknown function (DUF1504); In 83.35
COG4756367 Predicted cation transporter [General function pre 81.88
PRK03818552 putative transporter; Validated 81.63
COG1620522 LldP L-lactate permease [Energy production and con 81.13
PF06166308 DUF979: Protein of unknown function (DUF979); Inte 80.65
PRK10519151 hypothetical protein; Provisional 80.08
>PLN00136 silicon transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.7e-64  Score=542.11  Aligned_cols=471  Identities=61%  Similarity=1.030  Sum_probs=365.4

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHH
Q 008970            1 MAMASTVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLE   80 (547)
Q Consensus         1 ~~~~~~~k~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~   80 (547)
                      |+..+..|.+...+++...|++.++.+++.++++++.++++|+++++++|+++++|+++.+||+++++++|||+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~i~~~~~Allga~llll~g~~~~~~a~~~i~~~tl~ll~gmmii~~~L~   80 (482)
T PLN00136          1 MALASLPKVVLGSLAFGVFWMLAVFPSVPFLPIGRTAGALLSAVLMIVFHVISPDDAYASIDLPILGLLFATMVVGSYLK   80 (482)
T ss_pred             CCCCcccchhhHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            46678889999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             HhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccc
Q 008970           81 SADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATP  160 (547)
Q Consensus        81 ~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~Tp  160 (547)
                      ++|++|++++++.+..++++++++.++++++++|+|++|++++++|+|+++++|++.|++|.+++++++++||+||++||
T Consensus        81 ~tG~~~~ia~~l~~~~~~~~~ll~~l~~~ta~lSafl~N~~t~llm~Piv~~la~~~~~~p~~~ll~la~aAn~Gg~~Tp  160 (482)
T PLN00136         81 NAGMFKHLGRLLAWRSQGGRDLLCRVCVVTALASALFTNDTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATP  160 (482)
T ss_pred             HcCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhh
Confidence            99999999999988777788888899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccchheeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCcccccc
Q 008970          161 IGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFT  240 (547)
Q Consensus       161 iG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~  240 (547)
                      +|||+|+++.+.++++|.||++.++|+.++++++++.++++++||.++.+.+.+...++.  |. .++...++ +.    
T Consensus       161 iG~p~Nlii~~~~~i~F~dF~~~~~P~~li~l~v~~~~l~~~~r~~l~~~~~~~~~~~~~--~~-~~~~~~~~-~~----  232 (482)
T PLN00136        161 IGNPQNLVIAFNSKITFPKFLLGILPAMLAGMAVNMVMLLCMYWKDLDGGAELSVDGKQM--EA-VEEGRSPA-SA----  232 (482)
T ss_pred             ccccchheeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcccchhh--hh-hhcccccc-hh----
Confidence            999999999998899999999999999999999999999999999886432210000000  00 00000000 00    


Q ss_pred             ccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcc
Q 008970          241 SLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRG  320 (547)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (547)
                       ..++       +..+             .++..     .                             .+.+       
T Consensus       233 -~~~~-------~~~~-------------~~~~~-----~-----------------------------~~~~-------  250 (482)
T PLN00136        233 -KSTK-------QQSP-------------ALLQA-----G-----------------------------LNGD-------  250 (482)
T ss_pred             -hhhh-------hhhh-------------hhhhc-----c-----------------------------cccc-------
Confidence             0000       0000             00000     0                             0000       


Q ss_pred             cccchhhhhHHHhhcccccccc-----chhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCChHHHH
Q 008970          321 IGSVITLVNVLLRQLSRGKESL-----SSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARPSL  395 (547)
Q Consensus       321 l~~gd~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~i~~~~~gi~~~~~al~~a~~l~~~~~~~~~~~~  395 (547)
                       ..+|+   ..+...+++++.+     ..++|+.+.+.+...+++.++.....|+|++++|+.++.++++.+..+.+|++
T Consensus       251 -~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~ll~~~~~~~v~~~~l~~f~~g~p~~~iAl~~a~~lll~~~~~~~~~l  326 (482)
T PLN00136        251 -GNGDM---SSMMSENISTKHPWFMQCTEHRRKLFLKSFAYVVTVGMVVAYMVGLNMSWTAITTAIALVVVDFRDAEPCL  326 (482)
T ss_pred             -ccchh---HHHhhccccccccccccchhccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHH
Confidence             00000   0000000000000     02234444444432333444445567899999999999999988888999999


Q ss_pred             hhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 008970          396 EKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAI  475 (547)
Q Consensus       396 ~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~  475 (547)
                      +++||++++||+|+|++++|++++|+.+++++.+....+.+.....+.+.+++.++|+++||+|++++|.|.+.. .+..
T Consensus       327 ~~v~W~~Llff~GlFilv~~l~~tGl~~~i~~~l~~~~~~~~~~~~~~~~~~s~~lS~~isNvp~~~~m~p~v~~-~~~~  405 (482)
T PLN00136        327 DTVSYSLLVFFSGMFITVSGFNKTGLPGAIWNFMAPYSKVNSVGGISVLSVIILLLSNLASNVPTVLLMGDEVAA-AAAL  405 (482)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-Hhcc
Confidence            999999999999999999999999999999999876644444445556677889999999999999999996653 2222


Q ss_pred             hcC-CchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhhc
Q 008970          476 SAA-DEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPLI  546 (547)
Q Consensus       476 ~~~-~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~i  546 (547)
                      .+. .+...|+.+++++|+|||+||+||.+|+++.+.++|++++||+++|+||+|+|+|+++++++++.+.+
T Consensus       406 ~~~~~~~~~~~~la~ga~lGGn~TliGs~ANli~~~~~~~~~~~G~~isf~~f~k~G~P~~l~~~~i~~~~~  477 (482)
T PLN00136        406 ISPAAVTRSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAIGIPLI  477 (482)
T ss_pred             cCCcccchHHHHHHHHHhhccceeeccchhHHHHHHHHHHhhccCCcccHHHHHHHhHHHHHHHHHHHHHHH
Confidence            221 12458888999999999999999999999999998754469999999999999999999999988753

>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15445 arsenical pump membrane protein; Provisional Back     alignment and domain information
>cd01118 ArsB_permease Anion permease ArsB Back     alignment and domain information
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes Back     alignment and domain information
>PLN00137 NHAD transporter family protein; Provisional Back     alignment and domain information
>TIGR00935 2a45 arsenical pump membrane protein Back     alignment and domain information
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family Back     alignment and domain information
>cd01117 YbiR_permease Putative anion permease YbiR Back     alignment and domain information
>PRK09547 nhaB sodium/proton antiporter; Reviewed Back     alignment and domain information
>cd01116 P_permease Permease P (pink-eyed dilution) Back     alignment and domain information
>TIGR00785 dass anion transporter Back     alignment and domain information
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD Back     alignment and domain information
>TIGR00774 NhaB Na+/H+ antiporter NhaB Back     alignment and domain information
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13) Back     alignment and domain information
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR00784 citMHS citrate transporter, CitMHS family Back     alignment and domain information
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01116 P_permease Permease P (pink-eyed dilution) Back     alignment and domain information
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>TIGR00786 dctM TRAP transporter, DctM subunit Back     alignment and domain information
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13) Back     alignment and domain information
>PLN00136 silicon transporter; Provisional Back     alignment and domain information
>TIGR00785 dass anion transporter Back     alignment and domain information
>PRK15445 arsenical pump membrane protein; Provisional Back     alignment and domain information
>TIGR00935 2a45 arsenical pump membrane protein Back     alignment and domain information
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01118 ArsB_permease Anion permease ArsB Back     alignment and domain information
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein Back     alignment and domain information
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>PRK09547 nhaB sodium/proton antiporter; Reviewed Back     alignment and domain information
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01117 YbiR_permease Putative anion permease YbiR Back     alignment and domain information
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD Back     alignment and domain information
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional Back     alignment and domain information
>PLN00137 NHAD transporter family protein; Provisional Back     alignment and domain information
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family Back     alignment and domain information
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein Back     alignment and domain information
>TIGR00774 NhaB Na+/H+ antiporter NhaB Back     alignment and domain information
>TIGR00784 citMHS citrate transporter, CitMHS family Back     alignment and domain information
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes Back     alignment and domain information
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] Back     alignment and domain information
>TIGR00786 dctM TRAP transporter, DctM subunit Back     alignment and domain information
>COG2851 CitM H+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>TIGR00529 AF0261 converved hypothetical integral membrane protein Back     alignment and domain information
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>TIGR00791 gntP gluconate transporter Back     alignment and domain information
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange Back     alignment and domain information
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC Back     alignment and domain information
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional Back     alignment and domain information
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake Back     alignment and domain information
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional Back     alignment and domain information
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions Back     alignment and domain information
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease Back     alignment and domain information
>PRK09821 putative transporter; Provisional Back     alignment and domain information
>PRK11588 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC Back     alignment and domain information
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09921 permease DsdX; Provisional Back     alignment and domain information
>PRK14984 high-affinity gluconate transporter; Provisional Back     alignment and domain information
>PRK10472 low affinity gluconate transporter; Provisional Back     alignment and domain information
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional Back     alignment and domain information
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family Back     alignment and domain information
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein Back     alignment and domain information
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein Back     alignment and domain information
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional Back     alignment and domain information
>COG1288 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PRK10034 fructuronate transporter; Provisional Back     alignment and domain information
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length Back     alignment and domain information
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein Back     alignment and domain information
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] Back     alignment and domain information
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC Back     alignment and domain information
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease Back     alignment and domain information
>COG2056 Predicted permease [General function prediction only] Back     alignment and domain information
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional Back     alignment and domain information
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] Back     alignment and domain information
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein Back     alignment and domain information
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family Back     alignment and domain information
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport Back     alignment and domain information
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC Back     alignment and domain information
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) Back     alignment and domain information
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional Back     alignment and domain information
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] Back     alignment and domain information
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised Back     alignment and domain information
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family Back     alignment and domain information
>COG1906 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00791 gntP gluconate transporter Back     alignment and domain information
>TIGR00795 lctP L-lactate transport Back     alignment and domain information
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] Back     alignment and domain information
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] Back     alignment and domain information
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] Back     alignment and domain information
>PRK11588 hypothetical protein; Provisional Back     alignment and domain information
>COG2056 Predicted permease [General function prediction only] Back     alignment and domain information
>PRK10420 L-lactate permease; Provisional Back     alignment and domain information
>TIGR00529 AF0261 converved hypothetical integral membrane protein Back     alignment and domain information
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK10472 low affinity gluconate transporter; Provisional Back     alignment and domain information
>PRK09695 glycolate transporter; Provisional Back     alignment and domain information
>COG2851 CitM H+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>PRK10034 fructuronate transporter; Provisional Back     alignment and domain information
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions Back     alignment and domain information
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake Back     alignment and domain information
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport Back     alignment and domain information
>PRK09821 putative transporter; Provisional Back     alignment and domain information
>PRK14984 high-affinity gluconate transporter; Provisional Back     alignment and domain information
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function Back     alignment and domain information
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) Back     alignment and domain information
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family Back     alignment and domain information
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae Back     alignment and domain information
>PRK10420 L-lactate permease; Provisional Back     alignment and domain information
>PRK09695 glycolate transporter; Provisional Back     alignment and domain information
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] Back     alignment and domain information
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional Back     alignment and domain information
>PRK09921 permease DsdX; Provisional Back     alignment and domain information
>TIGR00795 lctP L-lactate transport Back     alignment and domain information
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] Back     alignment and domain information
>COG1288 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00366 conserved hypothetical integral membrane protein Back     alignment and domain information
>COG1620 LldP L-lactate permease [Energy production and conversion] Back     alignment and domain information
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange Back     alignment and domain information
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins Back     alignment and domain information
>COG4756 Predicted cation transporter [General function prediction only] Back     alignment and domain information
>TIGR00366 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters Back     alignment and domain information
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length Back     alignment and domain information
>COG4756 Predicted cation transporter [General function prediction only] Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>COG1620 LldP L-lactate permease [Energy production and conversion] Back     alignment and domain information
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins Back     alignment and domain information
>PRK10519 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 77/446 (17%), Positives = 135/446 (30%), Gaps = 139/446 (31%)

Query: 3   MASTV---KVVLGSIAFAIFWVMAVFPAVPFLPIGR--TAGSLLGAMLMVIFQVITPDQA 57
           +A  V     V   + F IFW          L +    +  ++L  ML  +   I P+  
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW----------LNLKNCNSPETVL-EMLQKLLYQIDPNWT 214

Query: 58  YAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLL-------------- 103
            +  D             ++ L    +   L R+L  K      LL              
Sbjct: 215 -SRSDHSS----------NIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAWNAF 262

Query: 104 ---CRICLIS---AISSALFTNDTSCVVLTEF---------------VLKIARQHNLPP- 141
              C+I L +    ++  L    T+ + L                   L    Q +LP  
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPRE 321

Query: 142 ----HPFLLALASSANIGSS-----ATPIGNPQNLVIAVQSKIPFGKFLIGILPA----M 188
               +P  L++     I  S     AT           + + I     L  + PA    M
Sbjct: 322 VLTTNPRRLSI-----IAESIRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKM 374

Query: 189 FVGVAV---NALI---LLTMYWKLLNSHKDEEDATAEVV----AEEDVTSHRFS------ 232
           F  ++V   +A I   LL++ W  +    D      ++      E+       S      
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 233 --------PATMSHFTSLNSQEWNSRLESMSLQNSPNVNGN------GSHAETLRN--RT 276
                      + H + ++        +S  L   P           G H + + +  R 
Sbjct: 434 ELKVKLENEYAL-HRSIVDHYNIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 277 SL----------VENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVIT 326
           +L          +E +I   S+    S  I N  +++          +    R       
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER------- 543

Query: 327 LVNVLLRQLSRGKESL-SSEWKRVLR 351
           LVN +L  L + +E+L  S++  +LR
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLR 569
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query547
4f35_D449 Transporter, NADC family; transport protein; HET: 100.0
4f35_D449 Transporter, NADC family; transport protein; HET: 99.87
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} Back     alignment and structure
Probab=100.00  E-value=1.3e-49  Score=428.55  Aligned_cols=385  Identities=17%  Similarity=0.202  Sum_probs=294.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC-CchhHHHHH
Q 008970           28 VPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR-GPKDLLCRI  106 (547)
Q Consensus        28 ~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~-~~~~ll~~i  106 (547)
                      .+.+|+.  ++++++.+++.++|+++++|++++++++++++++|+|+++.++++||+.+++|.++.++.+ +++++++.+
T Consensus        48 te~iP~~--vtall~~~l~~l~gv~~~~~a~~~~~~~~i~li~g~~~la~al~~tGl~~riA~~il~~~g~~~~~l~~~~  125 (449)
T 4f35_D           48 TEALHVT--VTAILVPVMAVFFGIFETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMSVAVFML  125 (449)
T ss_dssp             TTSSCSH--HHHHHHHHHHHHTTSSCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCSCTHHHHHHH
T ss_pred             hccccHH--HHHHHHHHHHHHHCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            3455675  7799999999999999999999999999999999999999999999999999999988766 578888999


Q ss_pred             HHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHhhhccccccCcccchheeecCCCChHHHH
Q 008970          107 CLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPH-----PFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFL  181 (547)
Q Consensus       107 ~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~-----~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~  181 (547)
                      ++.++++|+|+||+++++++.|++.++|++.+.+|.     ++++++++++|+||++||+|+|+|++..+..+++|.||+
T Consensus       126 ~~~~~~lS~~isn~a~~~~~~Pi~~~i~~~~~~~~~~~~~~~lll~~~~aa~igg~~t~ig~~~N~i~~~~~~~~f~~~~  205 (449)
T 4f35_D          126 FGVTALLSMWISNTATAAMMLPLVLGVLSKVDADKQRSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFTDWM  205 (449)
T ss_dssp             HHHHHHHHHHSCSHHHHHHHHHHHHHHSCSCCCSSCCSSTTTTHHHHHHHHHHHHSSSSSSSHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHHhcchHHHHHhchHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhhcccCcCCCcccccccccccHHHhh
Confidence            999999999999999999999999999999998874     588999999999999999999999999988999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCC
Q 008970          182 IGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPN  261 (547)
Q Consensus       182 ~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  261 (547)
                      ..++|+.++.+++...++    ++..|++.+.   .+|    .                  .+.                
T Consensus       206 ~~~~p~~li~l~~~~~~l----~~~~~~~~~~---~~~----~------------------~~~----------------  240 (449)
T 4f35_D          206 KFGLPTAMMMLPMAIAIL----YFLLKPTLNG---MFE----L------------------DRA----------------  240 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HTTC------------------------------------------------------
T ss_pred             hhcCchHHHHHHHHHHHH----HHHhcccccc---cch----h------------------hcc----------------
Confidence            999999888766543332    2333211000   000    0                  000                


Q ss_pred             CCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccc
Q 008970          262 VNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKES  341 (547)
Q Consensus       262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~  341 (547)
                                 +                                    .+.                          +  
T Consensus       241 -----------~------------------------------------~~~--------------------------~--  245 (449)
T 4f35_D          241 -----------P------------------------------------VNW--------------------------D--  245 (449)
T ss_dssp             ------------------------------------------------CCC--------------------------C--
T ss_pred             -----------c------------------------------------hhh--------------------------h--
Confidence                       0                                    000                          0  


Q ss_pred             cchhhHHHHHHHH-HHHHHHHHHHHHHh-CC--cHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHHHH
Q 008970          342 LSSEWKRVLRKSC-VYLITLGMLVSLLM-GL--NMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFN  417 (547)
Q Consensus       342 ~~~~~~~~~~~~~-~~~i~~~~i~~~~~-gi--~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~  417 (547)
                       ..+.+....... ..+........... +.  +...+++.++.++...++.+.||+.+++||+++++|+|+|.++++++
T Consensus       246 -~~~~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~val~~~~ll~~~~~l~~~~~~~~i~W~~l~~~~g~~~l~~~l~  324 (449)
T 4f35_D          246 -KGKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILMLSFARVVHWKEIQKTADWGVLLLFGGGLCLSNVLK  324 (449)
T ss_dssp             -CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHhhhhhccchhhhhcccCchHHHHhhhHHHHhHHHH
Confidence             000011000111 11111111111122 22  34566777777788889999999999999999999999999999999


Q ss_pred             HhCHHHHHHHHhhhhhh-cchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 008970          418 KTGIPSALWEFMEPYAE-IDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGN  496 (547)
Q Consensus       418 ~tG~~~~ia~~l~~~~~-~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~  496 (547)
                      +||+.+++++.+.+..+ .+.......+..++.++|+|+||+|+++++.| +....++..|.||. .+...+..++++|+
T Consensus       325 ~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~f~sn~a~~~~l~P-i~~~~a~~~g~~p~-~~~~~~~~~~s~~~  402 (449)
T 4f35_D          325 QTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTEFASNTASAALLIP-VFATVAEAFGMSPV-LLSVLIAVAASCAF  402 (449)
T ss_dssp             HHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETEECCHHHHHHHHHH-HHHHHHHHTTCCSH-HHHHHHHHHHHCCC
T ss_pred             hcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHHHcCCCHH-HHHHHHHHHHHHHh
Confidence            99999999999876433 22222233344456678999999999999999 56788888898875 55556666778899


Q ss_pred             hhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhh
Q 008970          497 LSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL  545 (547)
Q Consensus       497 ~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~  545 (547)
                      +||+|+++|.++++      .|+|  +|+||+|.|+|+++++.++...+
T Consensus       403 ~~p~~t~~n~i~~g------~g~~--~~~d~~k~G~~~~~~~~~v~~~~  443 (449)
T 4f35_D          403 MLPVATPPNAIVFA------SGHI--KQSEMMRVGLYLNIACIGLLTAI  443 (449)
T ss_dssp             SSSSSSHHHHHHCS------SGGG--GTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHh------cCCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998      4666  59999999999999988776543
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00