Citrus Sinensis ID: 008977

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
Protein Sequence
MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQELSKNVGRGQYPNGILRVQKEKDSVDEEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTMFMLVHGHYQRIMGHN
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccHHHHHHccccHHHHcHHHHHHHHHHcccHHHcccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHccccHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHcHHHHHHHHHHHcccccHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHHHHHHHHHcccccHHccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHcccccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccccHHcHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccHEEEEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDRKLFEAAakgdiepfREIARDELESIVTDLMNNTVLYGNITAShltlqteegeivSVSTKFVEHILdlspsvlfqadakgdsplhlaaKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLgmtneeqntplheavrlrsVDVAKILIvadphvpysanrnnetplymAAANGSVEIVAKILqkcpspahegpdgktALHAAVYTYPTEVIKQLFLHEEKRSLTAVrdkygwtplhhaaysgRELTSKLLldhdksaafiggkdrNMTALHLAAASGHIMVVDRILsscdgccakvderGWNFLHFAMVSLDLLqssglvikhptvrnsrlliaedvngntpLHVVAAVCRLSHRVAGLPQEIQELSknvgrgqypngilrvqkekdSVDEEALKEMQSLHTVVATLIATVTFAagftlpggywgkegpipgtpiliknagfqAFVVSDVIAMVLSVSAIFIYFLtpiktlrqtpflsevpHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTMFMLVHGHYQRIMGHN
Flexible Loop (DISEMBL)
mdrklfeaaakgdiepfreIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFakkqprdlqrGVKSAERQMlgmtneeqntplheaVRLRSVDVAKILIVAdphvpysanrnNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQElsknvgrgqypNGILRVQKEKDSVDEEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTMFMLVHGHYQRIMGHN
Low Complexity Region (SEG)
MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQELSKNVGRGQYPNGILRVQKEKDSVDEEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTMFMLVHGHYQRIMGHN
Disordered region (IsUnstruct)
****************FREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFA********************************AVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC**********KTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQEL********Y**GIL*****************QSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTMFMLVHGHYQRI****
Disordered Region (DISOPRED)
MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQELSKNVGRGQYPNGILRVQKEKDSVDEEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTMFMLVHGHYQRI****
Disordered Region (DISEMBL)
MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKK***********AERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQELSKNVGRGQYPNGILRVQKEKDSVDEEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTMFMLVHGHYQRIMGHN
Disordered Region (DISPRO)
*DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQP***QRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQELSKNVGRGQYPNGILRVQKEKDSVDEEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTMFMLVHGHYQR*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQELSKNVGRGQYPNGILRVQKEKDSVDEEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTMFMLVHGHYQRIMGHN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	547	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.789	0.824	0.239	7e-20
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.628	0.583	0.25	2e-17
O15084	1053	Serine/threonine-protein	yes	no	0.480	0.249	0.298	2e-16
Q505D1	1053	Serine/threonine-protein	yes	no	0.480	0.249	0.298	3e-16
Q25338	1214	Delta-latroinsectotoxin-L	N/A	no	0.480	0.216	0.273	2e-14
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.758	0.780	0.246	2e-14
Q502K3	1071	Serine/threonine-protein	no	no	0.468	0.239	0.294	4e-14
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.519	0.144	0.280	9e-14
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.436	0.127	0.301	1e-13
Q8NFD2	765	Ankyrin repeat and protei	no	no	0.477	0.341	0.274	2e-13

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 112/467 (23%), Positives = 202/467 (43%), Gaps = 35/467 (7%)

Query: 74  VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNT 133
           +L + +  G++ L++AA+ G   +VK L+K +              +  + G   +    
Sbjct: 48  LLAEQNQSGETALYVAAEYGYTDMVKILMKHS--------------DSVLAGTKAKNGFD 93

Query: 134 PLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK-CPSPA 192
             H A +  ++ V  +LI A+P + ++ + +  T L+ AA+ G  EIV  +L K     A
Sbjct: 94  AFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAA 153

Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
               +GKTALH+A     T ++K+L   E+K  +    DK G T LH A          +
Sbjct: 154 IARSNGKTALHSAARNGHTVIVKKLI--EKKAGMVTRVDKKGQTALHMAVKGQNTEIVDV 211

Query: 253 LLDHDKSAAFIGGKD-RNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAM 311
           L++ D S   I   D +  T LH+A       +V  +L  C+     V++ G        
Sbjct: 212 LMEADGS--LINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGE------- 262

Query: 312 VSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQELSK 371
            +LD+ + +GL    P ++   +  A  +     +    +  +L   V+ +  E+    +
Sbjct: 263 TALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLE 322

Query: 372 NVGRGQYPNGILRVQKEKDSVDEEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEG 431
             GR +    I  + K  + +  E L    +  T+VA LIATV FAA F +PG Y     
Sbjct: 323 QTGRTRRE--IQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPK 380

Query: 432 PIP-----GTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSEVPHY 486
            +P     G         F  FVV D  A+ +S++ + +     +   R    +  + + 
Sbjct: 381 DVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINK 440

Query: 487 LILVSLLAMVVAFTTGTYAVLAPSVG-LSVATCVLGSSFSLFAFVTM 532
           L+ ++ + + VAF + ++ V+      L+V    +G+   +    TM
Sbjct: 441 LMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTM 487

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 180/464 (38%), Gaps = 120/464 (25%)

Query: 156 HVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH---EGPD--------------- 197
           +V     R+N+T L++AA  G +  V +IL+   S       G +               
Sbjct: 65  YVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNE 124

Query: 198 ----GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
               G+TAL  A      +V+K+L  +  + S+ A +++ G+ PLH AA  G     ++L
Sbjct: 125 VNELGETALFTAADKGHLDVVKELLKYSSRESI-AKKNRSGYDPLHIAAIQGHHAIVEVL 183

Query: 254 LDHDK---------------SAAFIG------------------GKDRNMTALHLAAASG 280
           LDHD                SAA  G                   +  N  ALHLAA  G
Sbjct: 184 LDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQG 243

Query: 281 HIMVVDRILSSCDGCCAKVDERGWNFLHFAM-------VSLDLLQSSGLVIK-------- 325
           H+ V+  +LS       ++D++G   LH A+       V L L     +V++        
Sbjct: 244 HVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTA 303

Query: 326 -HPTVRNSRLLIAE------DVNGNT---------------PL-----HVVAAVCRLSH- 357
            H   R  R  I E      D N NT               PL     ++   + R    
Sbjct: 304 LHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGAL 363

Query: 358 RVAGLPQEIQELSKNVGRGQYPNGI---LRVQKEKDSVDEEALKEMQSLH---------- 404
           R   L Q   EL   V   Q  N +   L   K  +       KE++ LH          
Sbjct: 364 RANELNQPRDELRSTVT--QIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNS 421

Query: 405 -TVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAI 463
            TVVA L ATV FAA FT+PGG         G+ +++  A F+ F + + +A+  S++ +
Sbjct: 422 VTVVAVLFATVAFAAIFTVPGGDNND-----GSAVVVGRASFKIFFIFNALALFTSLAVV 476

Query: 464 FIYFLTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVL 507
            +         +    + EV + L+ ++ +   VAF   +Y V+
Sbjct: 477 VVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVV 520

Arabidopsis thaliana (taxid: 3702)

>sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 143/328 (43%), Gaps = 65/328 (19%)

Query: 74  VLFQADAKGDSPLHLAAKKGDAAIVKFLI-KFAKKQPRD------LQRGVKSAERQML-- 124
           V FQ D +  +PLH AA  GDA I++ LI   A+   +D      L R V S   + +  
Sbjct: 34  VNFQ-DNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDSKWLTPLHRAVASCSEEAVQV 92

Query: 125 --------GMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANG 176
                      ++   TPLH A   ++V  A+ L+    +V  S +R   T L+ AA +G
Sbjct: 93  LLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVS-DRAGRTALHHAAFSG 151

Query: 177 SVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWT 236
             E+V  +L +  +        + A+H A Y    EV+K L  H  +      +DK  +T
Sbjct: 152 HGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAE---VTCKDKKSYT 208

Query: 237 PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN------MTALHLAAASGHIMVVDRILS 290
           PLH AA SG     K LLD         G D N       T LH+A  +G  +VV+ ++ 
Sbjct: 209 PLHAAASSGMISVVKYLLDL--------GVDMNEPNAYGNTPLHVACYNGQDVVVNELID 260

Query: 291 SCDGCCAKVDERGWNFLHFAMVS------LDLLQSSGLVIK----------HPTVRNSR- 333
            C     + +E+G+  LHFA  S      L+LL  +G  +           H T  + R 
Sbjct: 261 -CGAIVNQKNEKGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGKTPLHMTALHGRF 319

Query: 334 -----------LLIAEDVNGNTPLHVVA 350
                      ++  ED NGNTPLH+ A
Sbjct: 320 SRSQTIIQSGAVIDCEDKNGNTPLHIAA 347

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Homo sapiens (taxid: 9606)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 144/328 (43%), Gaps = 65/328 (19%)

Query: 74  VLFQADAKGDSPLHLAAKKGDAAIVKFLI-KFAKKQPRD------LQRGVKSAERQMLGM 126
           V FQ D +  +PLH AA  GDA I++ LI   A+   +D      L R V S   + + +
Sbjct: 34  VNFQ-DNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDSKWLTPLHRAVASCSEEAVQI 92

Query: 127 ----------TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANG 176
                      ++   TPLH A   ++V  A+ L+    +V  S +R   T L+ AA +G
Sbjct: 93  LLKHSADVNARDKNWQTPLHIAAANKAVKCAESLVPLLSNVNVS-DRAGRTALHHAAFSG 151

Query: 177 SVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWT 236
             E+V  +L +  +        + A+H A Y    EV+K L  H  +      +DK  +T
Sbjct: 152 HGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAE---VTCKDKKSYT 208

Query: 237 PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN------MTALHLAAASGHIMVVDRILS 290
           PLH AA SG     K LLD         G D N       T LH+A  +G  +VV+ ++ 
Sbjct: 209 PLHAAASSGMISVVKYLLDL--------GVDMNEPNAYGNTPLHVACYNGQDVVVNELID 260

Query: 291 SCDGCCAKVDERGWNFLHFAMVS------LDLLQSSGLVIK----------HPTVRNSR- 333
            C     + +E+G+  LHFA  S      L+LL  +G  +           H T  + R 
Sbjct: 261 -CGANVNQKNEKGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGKTPLHMTALHGRF 319

Query: 334 -----------LLIAEDVNGNTPLHVVA 350
                      ++  ED NGNTPLH+ A
Sbjct: 320 SRSQTIIQSGAVIDCEDKNGNTPLHIAA 347

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|Q25338|LITD_LATTR Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 129/303 (42%), Gaps = 40/303 (13%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKF-----AKKQPRDL-------QRGVKSAERQMLG- 125
           D  G +PLH+AA+ G A  VK LI       AK    +L       + G     R +L  
Sbjct: 534 DKNGFTPLHIAAEAGQAGFVKLLINHGADVNAKTSKTNLTPLHLATRSGFSKTVRNLLES 593

Query: 126 ---MTNEEQN---TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNE-TPLYMAAANGSV 178
                NE+++   TPLH AV    + V  +L    P +  +A   +  TP ++A  N S 
Sbjct: 594 PNIKVNEKEDDGFTPLHTAVMSTYMVVDALL--NHPDIDKNAQSTSGLTPFHLAIINESQ 651

Query: 179 EIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL 238
           E+   +++       +  +    +H A      ++++ L   ++K S+ +V +   WTPL
Sbjct: 652 EVAESLVESNADLNIQDVNHMAPIHFAASMGSIKMLRYLISIKDKVSINSVTENNNWTPL 711

Query: 239 HHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAK 298
           H A Y  +E  +K LL  D     I   D N+T LHLA ++G I ++  +L        K
Sbjct: 712 HFAIYFKKEDAAKELLKQDDINLTIVA-DGNLTVLHLAVSTGQINIIKELLKRGSNIEEK 770

Query: 299 VDERGWNFLHFAMVSLDLLQSSGLVIKHPT-----VRNSRLLIAEDVNGNTPLHVVAAVC 353
             E G+  LH A +            K P      + N   + A   +  TPLH  A + 
Sbjct: 771 TGE-GYTSLHIAAMR-----------KEPEIAVVLIENGADIEARSADNLTPLHSAAKIG 818

Query: 354 RLS 356
           R S
Sbjct: 819 RKS 821

Insecticidal toxin that induces massive neurotransmitter release at insect but not vertebrate neuromuscular junctions. Forms cation-permeable pores (with high permeability to calcium) in lipid membranes locust muscle membrane and artificial lipid bilayers. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 201/471 (42%), Gaps = 56/471 (11%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           Q DA G++ ++++A +    I ++LI+F+  +               + + ++      H
Sbjct: 55  QNDA-GETAVYISAAENLEDIFRYLIRFSSLET--------------VKIRSKSDMNAFH 99

Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH-EG 195
            A +   + + K L+   P +    + +N +PLY AA    +EIV  +L   PS A    
Sbjct: 100 VAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVR 159

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL-TSKLLL 254
            +GKT+LH A       ++K L   E+  ++  V+DK G T LH A   GR L   + +L
Sbjct: 160 KNGKTSLHTAGRYGLLRIVKALI--EKDAAIVGVKDKKGQTALHMAV-KGRSLEVVEEIL 216

Query: 255 DHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVS 313
             D +   +  +DR   TALH+A       +   +L+        ++    N    AM  
Sbjct: 217 QADYT--ILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAIN----NQKETAMDL 270

Query: 314 LDLLQ--SSGLVIKHPTV----RNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQ 367
            D LQ   S L I    V    ++ R +  ED               L   V+ +  E+Q
Sbjct: 271 ADKLQYSESALEINEALVEAGAKHGRFIGRED-----------EARALKRAVSDIKHEVQ 319

Query: 368 -ELSKNVGRGQYPNGILRVQKEKDSVDEEALKEMQSLHTVVATLIATVTFAAGFTLPGGY 426
            +L +N    +  +GI    KE   +  EA++   +  TVVA L A++ F A F LPG Y
Sbjct: 320 SQLLQNEKTNRRVSGI---AKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQY 376

Query: 427 WGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSEVPHY 486
           +  EG   G   +    GF+ F + +  ++ +S++ + +         R    +  V + 
Sbjct: 377 F-TEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNK 435

Query: 487 LILVSLLAMVVAFTTGTYAV-------LAPSVGLSVATCVLGSSFSLFAFV 530
           L+  +      AF    +AV       +A ++ L  A  ++G+  S+  FV
Sbjct: 436 LMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFV 486

Arabidopsis thaliana (taxid: 3702)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 138/326 (42%), Gaps = 70/326 (21%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRD------LQRGVKSAERQMLGM----- 126
           D +  +PLH AA  GD  I+  LI   A    +D      L R   S   + +G+     
Sbjct: 38  DQERRTPLHAAAWLGDVHIMDLLISAGANVNAKDHVWLTPLHRAAASRNERAVGLLLRKG 97

Query: 127 -----TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY--SANRNNETPLYMAAANGSVE 179
                 ++   TPLH A   R+    + L+   PHV     A+R    PL+ AA +G  E
Sbjct: 98  ADVTARDKYWQTPLHIAAANRATRCVETLL---PHVSSLNMADRTGRAPLHHAAQSGYQE 154

Query: 180 IVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH 239
           +V  +L K  + +      +  +H A Y    EV+K L      +S    +DK G+TPLH
Sbjct: 155 MVKLLLNKGANLSASDKKDRQPIHWAAYLGHLEVVKLLVSQGSDKS---CKDKRGYTPLH 211

Query: 240 HAAYSGRELTSKLLLDH----DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGC 295
            AA SG     K LL +    D+  AF        TALH+A  +G   V + +++     
Sbjct: 212 AAAASGHVDVVKYLLRNGAEIDEPNAF------GNTALHVACYTGQEAVANELVNRG--- 262

Query: 296 CAKVDE---RGWNFLHFAMVS------LDLLQSSGLVIK---------------HPTVRN 331
            A V++   RG+  LH A VS      L+LL ++G  +                H     
Sbjct: 263 -ANVNQPNHRGYTPLHLAAVSTNGALCLELLVNNGADVNMQSKEGKSPLHMAAIHGRFTR 321

Query: 332 SRLLIAE-------DVNGNTPLHVVA 350
           S++LI         D  GNTPLHV A
Sbjct: 322 SQILIQNGGEIDCVDRYGNTPLHVAA 347

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 147/328 (44%), Gaps = 44/328 (13%)

Query: 27  SIVTDLMN-----NTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK 81
           +IV+ LM+     NT      TA H+  ++ + E+V    +++     +      +A AK
Sbjct: 430 NIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVV----RYL-----VQDGAQVEAKAK 480

Query: 82  GD-SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR 140
            D +PLH++A+ G A IV+ L          LQ+G         G T      PLH A R
Sbjct: 481 DDQTPLHISARLGKADIVQQL----------LQQGASPNAATTSGYT------PLHLAAR 524

Query: 141 LRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKT 200
               DVA  L+     +  +  +   TPL++AA  G +E+ + +LQK  SP   G  G T
Sbjct: 525 EGHEDVAAFLLDHGASLSITTKKGF-TPLHVAAKYGKLEVASLLLQKSASPDAAGKSGLT 583

Query: 201 ALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSA 260
            LH A + Y  + +  L L +      A ++  G+TPLH AA   +   +  LL++   A
Sbjct: 584 PLHVAAH-YDNQKVALLLLDQGASPHAAAKN--GYTPLHIAAKKNQMDIATSLLEYGADA 640

Query: 261 AFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSS 320
             +    + + ++HLAA  GH+ +V  +LS  +      ++ G   LH A       Q  
Sbjct: 641 NAV--TRQGIASVHLAAQEGHVDMVSLLLSR-NANVNLSNKSGLTPLHLAA------QED 691

Query: 321 GLVIKHPTVRNSRLLIAEDVNGNTPLHV 348
            + +    V     + A+   G TPLHV
Sbjct: 692 RVNVAEVLVNQGAHVDAQTKMGYTPLHV 719

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 127/289 (43%), Gaps = 50/289 (17%)

Query: 74  VLFQADAKGD-------SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGM 126
           +L Q DA+ D       +PLH+AA  G   + K L          L +G K   R + G 
Sbjct: 323 LLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVL----------LDKGAKPNSRALNGF 372

Query: 127 TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQ 186
           T      PLH A +   V V ++L+     +  +   +  TPL++A+  G + IV  +LQ
Sbjct: 373 T------PLHIACKKNHVRVMELLLKTGASID-AVTESGLTPLHVASFMGHLPIVKNLLQ 425

Query: 187 KCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR 246
           +  SP       +T LH A     TEV K L  ++ K +  A  D+   TPLH AA  G 
Sbjct: 426 RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ---TPLHCAARIGH 482

Query: 247 ELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNF 306
               KLLL+++ +           T LH+AA  GH+  V  +L   +   A + ++G+  
Sbjct: 483 TNMVKLLLENNANPNL--ATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTP 539

Query: 307 LHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDV-------NGNTPLHV 348
           LH A              K+  VR + LL+  D        NG TPLHV
Sbjct: 540 LHVAA-------------KYGKVRVAELLLERDAHPNAAGKNGLTPLHV 575

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q8NFD2|ANKK1_HUMAN Ankyrin repeat and protein kinase domain-containing protein 1 OS=Homo sapiens GN=ANKK1 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 112/291 (38%), Gaps = 30/291 (10%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFA---KKQPRD--------LQRGVKSAERQML- 124
           + D  G +PLH AA+ GD    + L+        Q R+         Q   ++  R ++ 
Sbjct: 423 RVDEDGWAPLHFAAQNGDDGTARLLLDHGACVDAQEREGWTPLHLAAQNNFENVARLLVS 482

Query: 125 -----GMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVE 179
                 +   E  TPLH A     V + K+L      +  +  RN  TPL++A   G V 
Sbjct: 483 RQADPNLHEAEGKTPLHVAAYFGHVSLVKLLTSQGAELD-AQQRNLRTPLHLAVERGKVR 541

Query: 180 IVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH 239
            +  +L+    P      G   LH A       + K L  +     L       GWTPLH
Sbjct: 542 AIQHLLKSGAVPDALDQSGYGPLHTAAARGKYLICKMLLRYGASLELPT---HQGWTPLH 598

Query: 240 HAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKV 299
            AAY G      LL +   +   +G    N T LHLAA  G   VV  +L  C       
Sbjct: 599 LAAYKGHLEIIHLLAESHANMGALGAV--NWTPLHLAARHGEEAVVSALL-QCGADPNAA 655

Query: 300 DERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
           ++ GW  LH A+     L    L+  H  V       A +  G TP H+ A
Sbjct: 656 EQSGWTPLHLAVQRSTFLSVINLLEHHANVH------ARNKVGWTPAHLAA 700

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	547
255585399	575	ankyrin repeat-containing protein, putat	0.925	0.88	0.395	3e-92
224127106	575	predicted protein [Populus trichocarpa]	0.943	0.897	0.371	1e-88
255551947	582	ankyrin repeat-containing protein, putat	0.904	0.850	0.374	8e-87
359477901	622	PREDICTED: ankyrin repeat-containing pro	0.936	0.823	0.353	2e-76
296085927	611	unnamed protein product [Vitis vinifera]	0.936	0.837	0.358	3e-76
356510752	629	PREDICTED: ankyrin-2-like [Glycine max]	0.934	0.812	0.346	1e-74
359478091	637	PREDICTED: ankyrin-1-like [Vitis vinifer	0.923	0.792	0.354	6e-74
298205141	645	unnamed protein product [Vitis vinifera]	0.895	0.759	0.372	2e-73
359478095	720	PREDICTED: ankyrin repeat-containing pro	0.901	0.684	0.354	1e-71
359477893	617	PREDICTED: ankyrin repeat-containing pro	0.917	0.813	0.349	2e-70

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 222/562 (39%), Positives = 316/562 (56%), Gaps = 56/562 (9%)

Query: 1   MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
           M   L++AA  G I+PF+  A   L+ +VT +  +T+L       HL L +        S
Sbjct: 27  MSLDLYKAAEDGKIDPFKNFA-GPLDLLVTPI-KDTIL-------HLNLASPSER----S 73

Query: 61  TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
           T FV+  LD+ P +L Q +A GD+ LH+AA+ G   IVK LI+  + Q +DL+     A 
Sbjct: 74  TSFVKEALDMCPQILLQINADGDTLLHIAARYGHLDIVKLLIEHTRAQHQDLE-SAGEAV 132

Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
           RQML MTN+ + T LHEA R    D+ ++LI  DP   +S+N   ETPLY+A+  G +E+
Sbjct: 133 RQMLRMTNKSKETALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASERGHLEV 192

Query: 181 VAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHH 240
           V  +L+ C S A+ GP+GKTALHAA       ++  +   ++K SL    D+ GWTPLH+
Sbjct: 193 VVIMLKACTSLAYGGPNGKTALHAAAMHRHGGIVHAIL--DKKTSLVNKADEMGWTPLHY 250

Query: 241 AAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVD 300
           AAY G     K LL +DK  A+   K R  TALHLAA   +I  +  I+  C  CC  VD
Sbjct: 251 AAYIGASRVVKQLLGYDKYVAYAADKARRRTALHLAACQANIKSMREIIFKCPDCCKLVD 310

Query: 301 ERGWNFLHFAMVSL--DLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR---- 354
            RGWN  H+A++S   D L+   +++ +P+     L+  +D  GNTPLH++AA+      
Sbjct: 311 NRGWNVAHYAVISKSDDALK---ILLANPSC--IYLVNEKDAQGNTPLHLLAALQSHPRS 365

Query: 355 -----LSHRVAGLPQ-----------------EIQELSKNVGRGQYPNGILRVQKEKDSV 392
                  HR A   Q                 EIQE  +++G G  P G + ++K+   +
Sbjct: 366 LMHHAKGHRFAVYRQNFLCIKELLSRSPCRKKEIQEWMRDLGGG--PLGQIVIKKDDFIL 423

Query: 393 DEEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPI-PGTPILIKNAGFQAFVVS 451
             E  ++    H VVA L+ATVTFAA FTLPGGY   +     G  IL KN+ F+AF+++
Sbjct: 424 TFERARDS---HIVVAALVATVTFAAAFTLPGGYRSNDDEKDQGVAILGKNSAFKAFLIT 480

Query: 452 DVIAMVLSVSAIFIYFLTPIKTLRQT-PFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPS 510
           D IAMVLS S++FI+F   +   RQ   +L       I+ ++ AMVVAF TGTYAVL+PS
Sbjct: 481 DAIAMVLSTSSLFIHFTLALHGYRQRFMWLMVYAFRCIVFAIEAMVVAFVTGTYAVLSPS 540

Query: 511 VGLSVATCVLGSSFSLFAFVTM 532
            GL+++TC +G SF +F F  +
Sbjct: 541 QGLAISTCAIGLSFFIFVFFIL 562

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 219/590 (37%), Positives = 318/590 (53%), Gaps = 74/590 (12%)

Query: 1   MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
           MD  LF+AA  G+I PF       L  ++T    NT+L+      +L  Q+ E E    S
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLTP-DENTILH-----VYLKNQSSEPE----S 50

Query: 61  TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
           T FV+  L+  P +LFQA+ +G++PLHL A+ G + +VK LI  AK  P D + GV  A 
Sbjct: 51  TDFVDKFLERCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPADPESGVTKA- 109

Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSV-- 178
           + ML MTNEEQ+T LHEA R R   V +IL   DP   Y AN + ETPLY+A + G +  
Sbjct: 110 KMMLRMTNEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMF 169

Query: 179 -----EIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKY 233
                ++V  IL  C S  + GPDG+TALHAA      E  +++   E+++ LT   D+ 
Sbjct: 170 SEEHGKVVDGILGNCISVDYGGPDGRTALHAASMAANYETARKML--EKEKKLTKTTDEN 227

Query: 234 GWTPLHHAAYSGRELTS--KLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS 291
           GW+PLH+A+Y         ++LL++D S A I   ++  TALH+AA  GH+  +  I+S 
Sbjct: 228 GWSPLHYASYCDWSNAPIVEVLLEYDASTASIAETEKKRTALHIAAIQGHVDAMKEIVSR 287

Query: 292 CDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAA 351
           C  CC  VD RGWN LH+A+ S D  +     +K P +  +RL   +D  GNTP H++AA
Sbjct: 288 CPACCDLVDNRGWNALHYAVASKD-TKVFKECLKIPEL--ARLQTEKDDKGNTPFHLIAA 344

Query: 352 VCR-----------------------LSHR-----------VAGLPQEIQELSKNVGRGQ 377
           +                         L+ R              + +EI E   + G G 
Sbjct: 345 LAHEQPEWRYVLFNDSNGYRKWQIYGLNKRKLSVNDIYEEDFGEIQKEILESLNDGGSGP 404

Query: 378 YPNGILRVQKEKDSVDEEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTP 437
                  +++ ++   E+AL + +  H VVA LIATVTFAA FTLPGGY        GT 
Sbjct: 405 LGRRRKVLRRGRNKEGEDALSKARESHLVVAALIATVTFAAAFTLPGGYKSDR----GTA 460

Query: 438 ILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIK---TLRQTPFLSE--------VPHY 486
           IL K A F  FVVSD ++MVLS+SA+FI+FL  +     + ++  +SE        V   
Sbjct: 461 ILAKKAAFIVFVVSDAMSMVLSISAVFIHFLISLIHAFEMEKSKDISEEAAIKLFGVATL 520

Query: 487 LILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTMFMLV 536
             ++ +  M++AF TGTYAVL PS+GL++++C++G SF    ++   +++
Sbjct: 521 FTMIGMGIMIIAFITGTYAVLEPSLGLAISSCLIGLSFFFIVYLVFRIIL 570

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 310/555 (55%), Gaps = 60/555 (10%)

Query: 1   MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
           MD +L++AA + +I   ++ A+D L+  VT    NT+L       H+ L +        S
Sbjct: 51  MDAELYKAAVEENINSLKKYAKD-LDLQVTP-KKNTIL-------HIHLNSPNKR----S 97

Query: 61  TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
             FV+  L L PS+L++ ++ GD+PLH+AA+ G   IVK L++ AK Q  DL+ G + A 
Sbjct: 98  VDFVKEALQLCPSLLWKNNSNGDAPLHIAARYGHIDIVKLLLEQAKAQNEDLETG-RGAM 156

Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
           +QM  M NE+++  LHEA R   + V ++L   DPH  Y AN   ETPLY+AAA G + +
Sbjct: 157 KQMWQMQNEKKDMALHEAARNNHLSVVRLLTRLDPHFLYPANDYEETPLYLAAARGYLYV 216

Query: 181 VAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHH 240
           V +IL  C S A+ GP GKTALH AV +    ++ ++ L  EKR LT   ++ GWTPLH+
Sbjct: 217 VIEILNTCKSVAYGGPKGKTALHGAVLSGNRGIVLEI-LKREKR-LTIEAEENGWTPLHY 274

Query: 241 AAYS-----GRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGC 295
           AAY      G  +  + LL+ DKSAA++  KDR  TALHLAA  G++ ++  I+S C  C
Sbjct: 275 AAYGNDQNFGAYVIVQRLLECDKSAAYVVDKDRKRTALHLAACRGNVRIMKEIISKCPDC 334

Query: 296 CAKVDERGWNFLHFAMVSLD------LLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVV 349
           C   D+RGWN LH+A+VS +      +L++S L+     + N R     D  GNTPLH++
Sbjct: 335 CEIADDRGWNVLHYAVVSKNDEALQVILRNSSLI----DLVNDR-----DAQGNTPLHLL 385

Query: 350 AAVCRLSHRVAGLPQEIQELSKNVGRGQYPNGILRVQKEKDSVDEEALKEMQSLHTVVAT 409
           A                      V R   P+ +   + + ++  ++ +     L   +  
Sbjct: 386 A----------------------VSRPYLPSFVFDGEDDLNAFYKQNVLSRDDLIHELLQ 423

Query: 410 LIATVTFAAGFTLPGGYWGKEG-PIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFL 468
                     FTLPGGY   E  P  GT IL K++ F+AF+++D IAMVLS  ++FI+F+
Sbjct: 424 PKYQQKRQXXFTLPGGYRSDENDPRQGTAILSKSSAFEAFIITDTIAMVLSTCSVFIHFI 483

Query: 469 TPIKTLRQT-PFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLF 527
             +   ++   +L       I+ ++ AMVVAF TGTYAVL+PS+GL+VATC +G SF ++
Sbjct: 484 VMLLGYQEKYWWLIRSALLFIMFAMGAMVVAFATGTYAVLSPSLGLAVATCFIGLSFFIY 543

Query: 528 AFVTMFMLVHGHYQR 542
            F  +  L   H ++
Sbjct: 544 VFYMLKRLYSRHLEK 558

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477901|ref|XP_003632040.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 212/600 (35%), Positives = 315/600 (52%), Gaps = 88/600 (14%)

Query: 1   MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVS-V 59
           MD  ++ AAAKG++   ++++ D+L+ I     +N+VL       H+  Q ++ E V+ +
Sbjct: 33  MDSSVYRAAAKGNVHVLKQLSEDDLQ-IQLSPKHNSVL-------HIAAQFDQPECVNWI 84

Query: 60  STKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSA 119
            T      L   P++      KGD+PLHLAA++G   +VK L++ AK  P D++ GV  A
Sbjct: 85  LTLPSSSSLLQRPNL------KGDTPLHLAAREGHLEVVKALLEAAKALPMDIESGV-GA 137

Query: 120 ERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVE 179
           ++ ++ M N+ ++T LHEAVR R  DV K+LI  DP   Y  N +  TPLYMAA  G  +
Sbjct: 138 DKALVRMRNKGKDTALHEAVRYRHSDVVKLLIKVDPEFMYGENISGGTPLYMAAERGFSD 197

Query: 180 IVAKILQKCP-SPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL 238
           +V  I++    SPA+ G  G+TALHAAV      + K++   E K +LT   D+ GW+PL
Sbjct: 198 LVEIIIENTSTSPAYHGLMGRTALHAAVIRKDKVMTKKIL--EWKPALTKEVDEIGWSPL 255

Query: 239 HHAAYSGRE--LTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCC 296
           H AAY G    +  +LL   DKS  ++G KD N TALH+AA  GH+ +V+ + S    CC
Sbjct: 256 HCAAYLGCSPTIVRELLQKSDKSVPYLGIKDGNKTALHIAANRGHMKIVELLASHSPDCC 315

Query: 297 AKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVN-----GNTPLHVVAA 351
            +VD++G N  HFAM+    L +  L+       NS L +   VN     G+TP H++++
Sbjct: 316 EQVDDKGNNVFHFAMLKRRWLATGNLLY------NSWLGVRGVVNEKNGEGDTPFHLISS 369

Query: 352 --------VCRL--------SHRVAGLP-------------------------------- 363
                   +C L        +    G+                                 
Sbjct: 370 YQIDDPTFICNLGVDKMAFNNQNFTGMDILSRANDICGRRDFVLRRFYRFKEAYVGPLWW 429

Query: 364 -QEIQELS-KNVGRGQYPNGILRVQKEKDSVD-EEALKEMQSLHTVVATLIATVTFAAGF 420
            +EI+E    + G+G+   G   +  +  S D  + ++     H +VA LIATVTFAAGF
Sbjct: 430 REEIKEDDGSSEGKGKGNEGDKGINIKNGSSDFSKVIQRRGENHLIVAALIATVTFAAGF 489

Query: 421 TLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFL 480
           TLPGGY   E    GT  L K   F+AFVV D +AMVLSVSAIFI+F       + +   
Sbjct: 490 TLPGGYNVNE----GTATLAKKTAFKAFVVMDTLAMVLSVSAIFIFFFMSWHVKKASLNK 545

Query: 481 SEVP-HYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTMFMLVHGH 539
             +P  +L ++++ AMV+AF TG YAVL  S  L + TC++  SF L  +  + +L+ G+
Sbjct: 546 HIIPGFFLTMLAMGAMVMAFMTGLYAVLPESSWLPLFTCIICCSFFLSLYFELNVLLKGY 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085927|emb|CBI31368.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 210/586 (35%), Positives = 305/586 (52%), Gaps = 74/586 (12%)

Query: 1   MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVS-V 59
           MD  L+EAAA G I+   +++       +T    NTVL       H+  Q  + + V  +
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEHHFVVQLTP-NKNTVL-------HIAAQFGQLDCVQYI 98

Query: 60  STKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSA 119
                   L L P++      KGD+PLH AA++G   +VK LI  AK+  ++++ GV   
Sbjct: 99  LGLHSSSSLLLKPNL------KGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGV-GG 151

Query: 120 ERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVE 179
           ++ ++ MTNEE+NT LHEAVR    +V K L   DP   Y AN    T LYMAA  G  +
Sbjct: 152 DKAIMRMTNEEENTALHEAVRYHHSEVVKSLTEEDPEFIYGANIAGYTLLYMAAERGFED 211

Query: 180 IVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH 239
           +V  IL  C SP++ G  G+TALHAAV     E+  +L   E K  LT   D+ GW+PLH
Sbjct: 212 LVNLILGTCTSPSYSGMMGRTALHAAVIRNDQEMTARLL--EWKPDLTKEVDENGWSPLH 269

Query: 240 HAAYSGRELTSKLLLDH--DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA 297
            AAY G     + LLD   DKS  ++G KD   TALH+AA   H  +V  +LS    CC 
Sbjct: 270 CAAYLGHTAIVEQLLDKSPDKSVTYLGLKDSKKTALHIAANRDHRDIVKLLLSHSPDCCE 329

Query: 298 KVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAA------ 351
           +VD++G N LH+A++S   L + G++ ++  +   RL+  +D  G+TPLH++A+      
Sbjct: 330 QVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLSVRRLINEKDAKGDTPLHLLASYQVYDP 389

Query: 352 VCRLSHRVAGLPQEIQELS--------KNVGRGQYPNGILR------------------V 385
                +RV  +     +L+        K   R  +   I R                  +
Sbjct: 390 FLSADNRVDKMALNKDKLTALDIISRDKVKPRRIFKEEIRRQWREWEKVVVGPFSWQEAI 449

Query: 386 QKEKDSVDEEALKEMQSL---------HTVVATLIATVTFAAGFTLPGGYWGKEGPIPGT 436
            K+  S   E +++ +S+         H +VA L+ATVTFAAGFTLPGGY        G 
Sbjct: 450 NKDSGSSKSEDVEKDESISTTKREGETHLIVAALVATVTFAAGFTLPGGYNDN-----GM 504

Query: 437 PILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSE---VPHYLILVSLL 493
            IL K A F+AF+V+D +A++LSVSA+F+YF   +       +L +   +  +L ++S+ 
Sbjct: 505 AILTKRAAFKAFIVTDTMAVILSVSAVFVYFFMSVH--EDEDYLDKHLIMGFFLTVLSMG 562

Query: 494 AMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSL---FAFVTMFMLV 536
           AMVVAF TG YAVL  S GL + TC++   F L   F F  +F  +
Sbjct: 563 AMVVAFMTGLYAVLPLSSGLPIVTCIICCIFLLAFYFVFRQLFKFI 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510752|ref|XP_003524098.1| PREDICTED: ankyrin-2-like [Glycine max]

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 199/574 (34%), Positives = 308/574 (53%), Gaps = 63/574 (10%)

Query: 1   MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
           +D  L+ AA +G+ + F  I    LE+++T    NT+L+ ++T++     ++ G+    S
Sbjct: 42  IDGALYFAAVEGNFQEFINI--HNLENLLTP-NKNTILHIHLTST----TSKSGKTTPAS 94

Query: 61  TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAK-KQPRDLQRGVKSA 119
            +FV  IL     ++   +AKG++ LH+AA+ G + I K L++ AK K   D++ GV  A
Sbjct: 95  AQFVTQILVKCGRLVLLPNAKGETLLHVAARYGHSNIAKLLLEHAKAKISPDIENGV-GA 153

Query: 120 ERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVE 179
           +++ +  TN+E +T LHEAVR   ++V K L+  DP   Y AN   ETPLY+A+   +++
Sbjct: 154 DQKFIRATNDELDTALHEAVRYDHIEVVKTLLEMDPDYSYYANNAKETPLYLASERQNLQ 213

Query: 180 IVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH 239
           +V +IL+K  SP+++GP+ +TALHAAV      + + L  +E  R    + DK GW PLH
Sbjct: 214 VVREILKKVKSPSYDGPNNQTALHAAVINQDIAMARDLLKNEHVRVAVKLADKKGWVPLH 273

Query: 240 HAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKV 299
           +A  +   + +KLLL  D++ A++   +   TALH+AA S    +V  I+     C   V
Sbjct: 274 YAVKTRNAVLTKLLLKEDENTAYM-QDNEGRTALHIAADSDSRRIVKMIIKYYPDCSEIV 332

Query: 300 DERGWNFLHFAMVSLDLLQSSGLVIKHPTVRN-------SRLLIAEDVNGNTPLHVVAAV 352
           D +GWN LH+A+       + G   K  T+R        S L   +DV+GNTPLH +   
Sbjct: 333 DNKGWNALHYAV-------NGG---KQNTIRRIMRNLYLSNLYNEKDVDGNTPLHYLPNS 382

Query: 353 CRLS-HRVAGLPQEIQ-----------------------ELSKNVGRGQY-------PNG 381
             ++ H++ G P+  +                       E  K    GQ           
Sbjct: 383 NLVACHKLVGHPRVDKLAVNKKDQTVLDVAYVKTEDPDPESDKRTREGQIVLLEMAGAKR 442

Query: 382 ILRV-QKEKDSVDEEAL-KEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPIL 439
            LR+ QK K+ ++     KE +  H +VATLI TV+FAAG TLPGG   ++G + GTP+L
Sbjct: 443 SLRLDQKSKNGLNGLVFPKEAKQTHLLVATLITTVSFAAGITLPGGTI-QDGELKGTPLL 501

Query: 440 IKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPI-KTLRQTPFLSEVPHYLILVSLLAMVVA 498
                F+AF+ S+ IAMVL+ +A FI   TP+ KT  +  + S+      L +L+ M+VA
Sbjct: 502 GHKTSFKAFMASNTIAMVLASTAAFINLFTPLTKTKWKDYYFSKAALIFTLTALVTMIVA 561

Query: 499 FTTGTYAVLAPSVGLSVATCVLGSSFSLFAFVTM 532
           F TGTY VL  S    +A   +G SF +FA+  M
Sbjct: 562 FATGTYVVLGSS-SFGIAIITIGLSFFIFAYCVM 594

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera]

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 215/606 (35%), Positives = 303/606 (50%), Gaps = 101/606 (16%)

Query: 1   MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
           MD  L+EAAA G I+   +++ D     +T    NTVL+         +  + G++    
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEDHFVVQLTP-NKNTVLH---------IAAQFGQL---- 92

Query: 61  TKFVEHILDLSPS--VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKS 118
              V++IL L+ S  +L + + KGD+PLH AA++G   +VK LI  AK+  ++++ GV  
Sbjct: 93  -DCVQYILGLNSSSFLLLRPNLKGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGV-G 150

Query: 119 AERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSV 178
            ++ ++ MTNEE+NT LHEAVR    +V K L   DP   Y AN    T LYMAA  G  
Sbjct: 151 GDKAIMRMTNEEENTALHEAVRYHHSEVVKSLTEEDPEFIYGANITGYTLLYMAAERGFE 210

Query: 179 EIVAKILQKCPSPAHEGPDGKTALHAAVY---------------TYPTEVIKQLFLHEEK 223
           ++V  I+  C SPAH G  G+TALHAAV                 +P E+  +L   E K
Sbjct: 211 DLVNLIIGTCTSPAHSGMMGRTALHAAVIRNDQGITYADPSLESRFPCEMTARLL--EWK 268

Query: 224 RSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH--DKSAAFIGGKDRNMTALHLAAASGH 281
             LT   D+ GW+PLH AAY G     + LLD   DKS  ++G KD   TALH+AA   H
Sbjct: 269 PDLTKEVDENGWSPLHCAAYLGYTAIVEQLLDKSPDKSVTYLGIKDSKKTALHIAANRHH 328

Query: 282 IMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVN 341
             +V R+LS    CC +VD++G N LH A++S        +   +  +  + L+  +D  
Sbjct: 329 QDIVKRLLSHSPDCCEQVDDKGNNVLHSAIMSERYYAPGNIFRDNSLLWVTGLINEKDAK 388

Query: 342 GNTPLHVVAA------VCRLSHRVAGLPQEIQELS-------KNVGRGQYPNGILRVQ-K 387
           G+TPLH++A+          ++RV  +     +L+        NV  G     +L  Q K
Sbjct: 389 GDTPLHLLASYQVYDPFLSENNRVDKMALNKDKLTALDILSRANVKSGNISREVLLKQLK 448

Query: 388 EKDSVD------EEALKE---------------------------------MQSLHTVVA 408
           E + VD      +EA+ +                                 +   H +VA
Sbjct: 449 EGEKVDVGPFSWQEAINKDSGSTGNGSADDNGSSSKSKDVGEDKIISNINRIGETHLIVA 508

Query: 409 TLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFL 468
            L+ATVTFAAGFTLPGGY        G   L K A F AF+V+D IA+ LSVSA+F+YF 
Sbjct: 509 ALVATVTFAAGFTLPGGY-----DSDGMATLTKKAAFIAFIVTDTIAVTLSVSAVFVYFF 563

Query: 469 TPIKTLRQTPFLSE---VPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFS 525
             +       FL +      YL +  + AM+VAF TG YAVL  S GL +  C++ S F 
Sbjct: 564 MSLH--EDEGFLEKHLFTGFYLTVFGIGAMMVAFMTGLYAVLPLSSGLPIVACIICSFFL 621

Query: 526 L-FAFV 530
           L F FV
Sbjct: 622 LPFYFV 627

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205141|emb|CBI17200.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 204/547 (37%), Positives = 294/547 (53%), Gaps = 57/547 (10%)

Query: 5   LFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFV 64
           ++EAAA GDI+   EI   E E +     +NT+L+         + +E G+     T  V
Sbjct: 119 VYEAAAMGDIKILEEIPESEFE-VQLSPKHNTILH---------IASEFGQ-----TDCV 163

Query: 65  EHILDL--SPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ 122
           + IL+L    S+L + +  GD+PLHLAA++G   +V+ LI  AK+ P D++    S+E+ 
Sbjct: 164 KWILELPSCSSLLQRPNMNGDTPLHLAAREGHLEVVEALINTAKQLPLDIETKT-SSEKV 222

Query: 123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVA 182
           ML MTN+ ++T LHEAVR    DV K+LI  DP   Y AN +  TPLYMAA  G  ++V 
Sbjct: 223 MLRMTNKGKDTALHEAVRYWHSDVVKLLIEEDPDFSYGANDSGTTPLYMAAERGYRDVVK 282

Query: 183 KILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA 242
            I+    SP++ G  G+TALHAAV             + + R    +  + GW+PLH  A
Sbjct: 283 IIIDNSTSPSYNGLMGRTALHAAV-----------ICNNQGRKCIYLFYENGWSPLHCGA 331

Query: 243 YSGRELT-SKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDE 301
             G + T    LL+ DKS A++  KD N TALH+A+   H  +V+ I+S   GC  +VD+
Sbjct: 332 ERGCDPTIVGELLNIDKSVAYLTIKDGNKTALHIASFHHHTKIVEEIVSHSPGCREQVDD 391

Query: 302 RGWNFLHFAMVSLDLLQSSGLVIKHPTVRN----SRLLIAE-DVNGNTPLHVVAA--VCR 354
           +G N  HFAM+     +       H   RN    +R L+ E D  GNTPLH+++   + R
Sbjct: 392 KGNNAFHFAMMK----KGDDDYYIHSYFRNKWLRTRGLVNEKDAQGNTPLHLLSCYQIQR 447

Query: 355 LSHRVAGLPQEIQELSKNVGRGQYPNGILRVQKEKDSVDEE-----ALKEMQSLHTVVAT 409
            S +     Q    +  N         + +++KE +S + +      L++    H +V+ 
Sbjct: 448 FSEKGKIQEQFEWAMPGNTSMAM-EKSMKKLKKETESKEYKEKYTSELRKQGETHLIVSA 506

Query: 410 LIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLT 469
           LI TVTFAAGFTLPGGY  KE    G  IL K A F AFVV+D IAMV S+ A+F++F  
Sbjct: 507 LITTVTFAAGFTLPGGY--KED--DGKAILSKKAAFGAFVVTDTIAMVSSLCAVFLHFFM 562

Query: 470 PIKTLRQTPFLSE---VPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVATCVLGSSFSL 526
            ++  +   FL +         +V + AM +AF TG Y VL  S GLS  +C+L S F L
Sbjct: 563 TMR--KDDEFLEKHLLWAFIFTMVGMGAMAIAFATGLYVVLPHSSGLSFLSCILCSCFFL 620

Query: 527 FAFVTMF 533
            +FV  +
Sbjct: 621 -SFVVEY 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478095|ref|XP_002274107.2| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 205/579 (35%), Positives = 297/579 (51%), Gaps = 86/579 (14%)

Query: 1   MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVS-V 59
           MD  L+EAAA G I+   +++       +T    NTVL       H+  Q  + + V  +
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEHHFVVQLTP-NKNTVL-------HIAAQFGQLDCVQYI 98

Query: 60  STKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSA 119
                   L L P++      KGD+PLH AA++G   +VK LI  AK+  ++++ GV   
Sbjct: 99  LGLHSSSSLLLKPNL------KGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGV-GG 151

Query: 120 ERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVE 179
           ++ ++ MTNEE+NT LHEAVR    +V K L   DP   Y AN    T LYMAA  G  +
Sbjct: 152 DKAIMRMTNEEENTALHEAVRYHHSEVVKSLTEEDPEFIYGANIAGYTLLYMAAERGFED 211

Query: 180 IVAKILQKCPSPAHEGPDGKTALHAAVY---------------TYPTEVIKQLFLHEEKR 224
           +V  IL  C SP++ G  G+TALHAAV                 +P E+  +L   E K 
Sbjct: 212 LVNLILGTCTSPSYSGMMGRTALHAAVIRNDQGITYADPSLESRFPCEMTARLL--EWKP 269

Query: 225 SLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH--DKSAAFIGGKDRNMTALHLAAASGHI 282
            LT   D+ GW+PLH AAY G     + LLD   DKS  ++G KD   TALH+AA   H 
Sbjct: 270 DLTKEVDENGWSPLHCAAYLGHTAIVEQLLDKSPDKSVTYLGLKDSKKTALHIAANRDHR 329

Query: 283 MVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNG 342
            +V  +LS    CC +VD++G N LH+A++S   L + G++ ++  +   RL+  +D  G
Sbjct: 330 DIVKLLLSHSPDCCEQVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLSVRRLINEKDAKG 389

Query: 343 NTPLHVVAA------VCRLSHRVAGLPQEIQELS--------KNVGRGQYPNGILR---- 384
           +TPLH++A+           +RV  +     +L+        K   R  +   I R    
Sbjct: 390 DTPLHLLASYQVYDPFLSADNRVDKMALNKDKLTALDIISRDKVKPRRIFKEEIRRQWRE 449

Query: 385 --------------VQKEKDSVDEEALKEMQSL---------HTVVATLIATVTFAAGFT 421
                         + K+  S   E +++ +S+         H +VA L+ATVTFAAGFT
Sbjct: 450 WEKVVVGPFSWQEAINKDSGSSKSEDVEKDESISTTKREGETHLIVAALVATVTFAAGFT 509

Query: 422 LPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLS 481
           LPGGY        G  IL K A F+AF+V+D +A++LSVSA+F+YF   +       +L 
Sbjct: 510 LPGGYNDN-----GMAILTKRAAFKAFIVTDTMAVILSVSAVFVYFFMSVH--EDEDYLD 562

Query: 482 E---VPHYLILVSLLAMVVAFTTGTYAVLAPSVGLSVAT 517
           +   +  +L ++S+ AMVVAF TG YAVL  S GL + T
Sbjct: 563 KHLIMGFFLTVLSMGAMVVAFMTGLYAVLPLSSGLPIVT 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477893|ref|XP_002271294.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 199/569 (34%), Positives = 294/569 (51%), Gaps = 67/569 (11%)

Query: 1   MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
           MD  ++EAAAKGDI+  ++I   E  + ++   +NT+L+         + +E G+I  V+
Sbjct: 53  MDDSVYEAAAKGDIDVLKKIPESEFHAQLSP-KHNTILH---------IASEFGKIECVN 102

Query: 61  TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
                           + +   D+PLHLAA++G   +V+ LI  A++   D++ G     
Sbjct: 103 WILDLPSSSSLLQ---RPNLNEDTPLHLAARQGHLEVVEALINAAREPTLDIETG-PGPH 158

Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
           + ML M N+ ++T LHEAVR R+  V  +LI  DP   Y AN +  TPLYMA   G    
Sbjct: 159 KVMLRMKNKGKDTALHEAVRYRNYGVVMLLIEEDPDFTYGANDSGITPLYMAVEGGFTAA 218

Query: 181 VAKILQKCP-SPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH 239
           V  I++K   SP++ G  G+TALHAAV     E+ K +   E K  LT   DK GW+PLH
Sbjct: 219 VKLIIEKSSTSPSYNGLMGRTALHAAVICNDIEMTKTIL--EWKPDLTKEVDKNGWSPLH 276

Query: 240 HAAYSG--RELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA 297
           +AA  G   E+   LL   +KS A++  KD   TALH+A+   H  +V++ILS   GC  
Sbjct: 277 YAAERGCDPEIVRLLLEKSEKSVAYLRSKDGKKTALHIASFHHHTKIVEKILSHSPGCRE 336

Query: 298 KVDERGWNFLHFAMVSL--DLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA----- 350
           +VD++G N  HFAM+    D    S     +  +R+  L+  ++  GNTP+H+++     
Sbjct: 337 QVDDKGNNIFHFAMMKEGDDDFNPSSYFFNY-WLRSRGLVNEKNAQGNTPIHLLSLNQIL 395

Query: 351 ------------------------AVCRLSHRVAGLPQEIQELSKNVGRGQYPNGILRVQ 386
                                    + R    ++     IQ   + V  G+  +     +
Sbjct: 396 DFRFVWNYKVDKKAYNNEDLTAYDIILRDKEDISEEKDRIQSWLEAVTTGRI-SSFWEKE 454

Query: 387 KEKDSVDEE------ALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILI 440
            ++  +++E       L++    H +V+ LI TVTFAAGFTLPGGY  KE    G  IL 
Sbjct: 455 TKRQEIEQERKEYISQLQKQGETHLIVSALITTVTFAAGFTLPGGY--KED--DGQAILS 510

Query: 441 KNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTLRQTPFLSE---VPHYLILVSLLAMVV 497
           K A F+AFVV+D IAMV S+ A+F++FL  +   ++  FL +       L +V + AM +
Sbjct: 511 KKAAFRAFVVTDTIAMVSSLCAVFLHFLMTLH--KRGKFLEKHLLWAFSLTMVGMGAMAI 568

Query: 498 AFTTGTYAVLAPSVGLSVATCVLGSSFSL 526
           AF TG YAVL  S GLSV TC+L S F L
Sbjct: 569 AFATGLYAVLPHSSGLSVLTCILCSCFFL 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	547
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.515	0.420	0.242	3.9e-23
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.519	0.415	0.262	1.4e-21
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.491	0.436	0.270	3.1e-21
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.736	0.769	0.248	3.2e-21
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.405	0.408	0.309	4e-21
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.804	0.767	0.275	2.7e-19
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.279	0.285	0.306	3e-19
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.678	0.628	0.264	7.9e-19
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.513	0.404	0.270	6.8e-18
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.519	0.443	0.275	9.6e-18

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
 Identities = 72/297 (24%), Positives = 125/297 (42%)

Query:    62 KFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAER 121
             + V+ I+   P +LF+ ++   +PLH+A   G   +V+ L+         L         
Sbjct:   115 ELVKEIIFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESEGLN 174

Query:   122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMA--AANGSVE 179
               + + +E+ NT L+ A+  R +++A  L+ AD   P+  N    + LY A  A N   +
Sbjct:   175 PHV-LKDEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNNKGISSLYEAVDAGNKFED 233

Query:   180 IVAKILQKCPSPAHE-----GPDGKTA--LHAAVYTYPTEVIKQL-FLHEEKRSLTAVRD 231
             +V  IL+               D K     H A      + I  L  + +E  SL   +D
Sbjct:   234 LVKAILKTTDDNVDREVRKFNLDSKLQGNKHLAHVALKAKSIGVLDVILDEYPSLMDEQD 293

Query:   232 KYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS 291
             + G T L + A  G       +L+      ++  +D +   +H AA + H  ++   +  
Sbjct:   294 EDGRTCLSYGASIGYYKGLCNILNRSTKGVYVCDQDGSFP-IHSAAKNEHYEIIKEFIKR 352

Query:   292 CDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHV 348
             C      ++  G N LH A  +   L +  L+    T     L + +DV+GNTPLH+
Sbjct:   353 CPASKYLLNRLGQNILHVAAKNEASLTAYMLMHDKDT---KHLGVGQDVDGNTPLHL 406

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
 Identities = 78/297 (26%), Positives = 136/297 (45%)

Query:    62 KFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAER 121
             + V++I+     +L ++++K   PLH+AA+ G  A+V+ L+         L    +    
Sbjct:   133 ELVKNIVSECSCLLMESNSKDQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILN 192

Query:   122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIV 181
               L + +   +T L+ A++    +VA  L+ A+    + A ++  +PLY+A       +V
Sbjct:   193 PYL-LKDINGDTALNLALKGHYTEVALCLVNANRQASFLACKDGISPLYLAVEAKDASLV 251

Query:   182 AKIL-QKCPSPAHEGPDGKTAL-HAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH 239
               +L    P   +   +G+  L HAA+ +  T+++  + L+E   SL   RD+ G T L 
Sbjct:   252 KAMLGNDGPQRKNLNLEGRKYLAHAALNSLSTDIL-DVILNEYP-SLVDERDEEGRTCLS 309

Query:   240 HAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKV 299
               A  G       LL+  +   F+   D +   +HLA   G I VV  I   C      +
Sbjct:   310 FGASIGYHKGVCNLLNRSRKGVFVCDDDGSYP-IHLAVEKGRIKVVKEICKRCPYSKLLL 368

Query:   300 DERGWNFLHFAMVSLDLLQSSGLVIKHPTVRN--SRLLIAEDVNGNTPLHVVAAVCR 354
             +++G N LH A  S         +++H T     + L   +DV+GNTPLH+     R
Sbjct:   369 NKKGQNLLHIAAES-----GKFRILRHLTAHEQINHLANEKDVDGNTPLHLATIYWR 420

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 79/292 (27%), Positives = 143/292 (48%)

Query:    64 VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQM 123
             VE I+   P++L   +  G++ LH+AA+ G   IV+ L++F  +          S+    
Sbjct:    88 VEFIISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRFITES---------SSYDAF 138

Query:   124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
             +   ++  +T LH A++ + V+VA  L+     V +  N +  +PLYMA   G  E+V K
Sbjct:   139 IAAKSKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLK 198

Query:   184 ILQKCPSPAHEGP--DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA 241
             +L+   SP+       GK+ +HAA+     +++  + L ++   L  +R++ G T L + 
Sbjct:   199 MLESSSSPSILASMFSGKSVIHAAMKANRRDILG-IVLRQDP-GLIELRNEEGRTCLSYG 256

Query:   242 AYSG-RELTSKLLLDHDKSAAFIG--GKDRNMTALHLAAASGHIMVVDRILSSCDGCCAK 298
             A  G  E    +L + DK+A+ +     D   T +H+AA  GH+ ++   L  C      
Sbjct:   257 ASMGCYEGIRYILAEFDKAASSLCYVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSREL 316

Query:   299 VDERGWNFLHFAMVSLDLLQSSGLVIKH--PTVRNSRLLIAEDVNGNTPLHV 348
             ++ +  N  H A ++         V+K+        R++  +D+NGNTPLH+
Sbjct:   317 LNNQCQNIFHVAAIA-----GKSKVVKYLLKLDEGKRMMNEQDINGNTPLHL 363

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 106/426 (24%), Positives = 188/426 (44%)

Query:   116 VKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAAN 175
             +K ++  + G   +      H A +  ++ V  +LI A+P + ++ + +  T L+ AA+ 
Sbjct:    76 MKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQ 135

Query:   176 GSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYG 234
             G  EIV  +L K     A    +GKTALH+A     T ++K+L   E+K  +    DK G
Sbjct:   136 GHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLI--EKKAGMVTRVDKKG 193

Query:   235 WTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKD-RNMTALHLAAASGHIMVVDRILSSCD 293
              T LH A          +L++ D S   I   D +  T LH+A       +V  +L  C+
Sbjct:   194 QTALHMAVKGQNTEIVDVLMEADGS--LINSADNKGNTPLHIAVRKNRAEIVQTVLKYCE 251

Query:   294 GCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVC 353
                  V++ G         +LD+ + +GL    P ++   +  A  +     +    +  
Sbjct:   252 VSRVAVNKSG-------ETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSR 304

Query:   354 RLSHRVAGLPQEIQELSKNVGRGQYPNGILRVQKEKDSVDEEALKEMQSLHTVVATLIAT 413
             +L   V+ +  E+    +  GR +    I  + K  + +  E L    +  T+VA LIAT
Sbjct:   305 KLKETVSEIGHEVHTQLEQTGRTR--REIQGIAKRVNKMHTEGLNNAINSTTLVAILIAT 362

Query:   414 VTFAAGFTLPGGYWG--KEGPIPGTPILIKNAG----FQAFVVSDVIAMVLSVSAIFIYF 467
             V FAA F +PG Y    K+ P PG  +    A     F  FVV D  A+ +S++ + +  
Sbjct:   363 VAFAAIFNVPGQYTDDPKDVP-PGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQT 421

Query:   468 LTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPSVG-LSVATCVLGSSFSL 526
                +   R    +  + + L+ ++ + + VAF + ++ V+      L+V    +G+   +
Sbjct:   422 SVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMV 481

Query:   527 FAFVTM 532
                 TM
Sbjct:   482 STLGTM 487

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
 Identities = 74/239 (30%), Positives = 110/239 (46%)

Query:   120 ERQMLGMTNEEQNTPLHEAVRLRSVD-VAKILI-VADPHVPY---SANRNNETPLYMAAA 174
             ++ M  +T +  +T LH AVR  + D V +IL    +  +       N++ ET LY+AA 
Sbjct:    16 KKMMKQLTGKRDDTLLHSAVRHGNKDRVVEILTKTRESELNQLLGKQNQSGETALYVAAE 75

Query:   175 NGSVEIVAKILQKCPSPAH---EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRD 231
              G VEIV +++  C   A    +  +G  A H A      +V+K   L E    L    D
Sbjct:    76 YGDVEIVKEMIN-CYDLALVEIKARNGFDAFHIAAKQGDLDVLK--VLAEAHSELAMTVD 132

Query:   232 KYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS 291
                 T LH AA  G       LL+   S A I  K    TALH A+ +GH+ V+  +L+S
Sbjct:   133 LSNTTALHTAATQGHTEVVNFLLELGSSLAGIA-KSNGKTALHSASRNGHVKVIKALLAS 191

Query:   292 CDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
                   ++D++G   LH A+   ++     L+        S + IA D  GNT LH+ A
Sbjct:   192 EPAIAIRMDKKGQTALHMAVKGTNVEVVEELI----KADRSSINIA-DTKGNTALHIAA 245

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 139/505 (27%), Positives = 226/505 (44%)

Query:    62 KFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAER 121
             + VE I+ L PS++   +  GD+PLH AA+ G A IV  +          L  G   AE 
Sbjct:    68 EIVEAIIKLCPSLVGVTNLDGDTPLHFAARWGHATIVAQI----------LASGY--AE- 114

Query:   122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGS-VEI 180
                   N    T    A R  + DVA +++     +            Y     G   +I
Sbjct:   115 --FTPVNGRGETAFVVACRYTNPDVASLILEETSSITIGE-------FYATFVLGEYTDI 165

Query:   181 VAKILQKCPSPAHEGPDGK--TALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL 238
               ++L++ P  A    DG+  T LH A      E+ K L   +E  SL    +K G+TPL
Sbjct:   166 ARRMLERFPKLAWNA-DGELSTPLHHACNANNLEITKMLLEIDE--SLAERVNKDGFTPL 222

Query:   239 HHAAYSGRELTSKLLLDH-DKSAAFIGG-KDRNMTALHLAAASGHIMVVDRILSSCD--G 294
             H AA    + +  +L +  DK+  +         T  HLAA   +I+    +  S D   
Sbjct:   223 HLAAM---KCSIPILKEFSDKAPRYFDILTPAKETVFHLAAEHKNILAFYFMAESPDRNN 279

Query:   295 CCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTV-----RNSRLLIAED-VN-GNTPLH 347
                +VD  G   LH A++S     S  + I + T      +N+R L A D +N  +    
Sbjct:   280 LLHQVDRYGNTVLHTAVMSS--CYSVIVSITYETTIDLSAKNNRGLKAVDLINVDDEDYS 337

Query:   348 VVAAVCRL-SHRVAGLPQ-EIQELSKNVG-RGQYPN-GILRVQKEKDS-VDEEALKEMQS 402
              ++   R  + ++  L     Q+ +KN+G   +Y    I     +++S +  EAL   ++
Sbjct:   338 KISRWLRFDAKQIRSLSDPNHQQGNKNMGVLSEYKKMQIFETPSKRESKMHAEALLNARN 397

Query:   403 LHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVS- 461
               T+VA LIA+V F  G   PGG + +EGP  G     +   FQ F +S+ IA+  S+  
Sbjct:   398 TITIVAVLIASVAFTCGINPPGGVY-QEGPYKGKSTAGRTLAFQVFSISNNIALFTSLCI 456

Query:   462 AIFIYFLTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVLAPSV-G-------- 512
              I +  + P +T     FL ++ H ++ V++ +M +A+ +   +++ P V G        
Sbjct:   457 VILLVSIIPYRTRPLKNFL-KLTHRILWVAVASMALAYVSAA-SIIIPHVEGKRWLFTTV 514

Query:   513 LSVATCVLGSSFSLFAFVTMFMLVH 537
             LS++T +LG    LFAF+T  ++ H
Sbjct:   515 LSISTLMLGG---LFAFMTYKVIRH 536

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
 Identities = 49/160 (30%), Positives = 79/160 (49%)

Query:   387 KEKDSVDEEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQ 446
             KEK+ +  EAL+  ++  TVVA LIA+VTF  G   PGG + ++G   G         F+
Sbjct:   351 KEKE-MQSEALQNARNTITVVAVLIASVTFTCGLNPPGGVY-QDGHFIGKATAGGTVAFK 408

Query:   447 AFVVSDVIAMVLSVSAIFIYF-LTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYA 505
              F VS+ IA+  S+  + +   + P +T     FL  + H +I ++++AM  A+  GT  
Sbjct:   409 VFSVSNSIALFTSLCIVILLLSIIPFRTKSLKTFLI-ITHKMIWLAVIAMASAYVAGTCV 467

Query:   506 VLAPSVG---LSVATCVLGSSFSLFAFVTMFMLVHGHYQR 542
              L  S G   +  AT V+        F+ ++  +  H  R
Sbjct:   468 TLPHSRGNKWVLKATLVIACVMLGGMFIFLWFKLANHMSR 507

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 7.9e-19, P = 7.9e-19
 Identities = 104/393 (26%), Positives = 170/393 (43%)

Query:   116 VKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAAN 175
             +K + R+ +   N     PLH A       + ++L+  D  +  +   +N TPL  AA  
Sbjct:   149 LKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMR 208

Query:   176 GSVEIVAKILQKCPSPAH-EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYG 234
             G  E+V ++L K  +       + K ALH A      EVIK L L ++ +    + DK G
Sbjct:   209 GHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKAL-LSKDPQLARRI-DKKG 266

Query:   235 WTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDG 294
              T LH A         KLLLD D +      K  N TALH+A       +V+ +LS  D 
Sbjct:   267 QTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCN-TALHVATRKKRAEIVELLLSLPDT 325

Query:   295 CCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR 354
                 +       L  A   L L + S   IK    R+  L  A ++N      + + V +
Sbjct:   326 NANTLTRDHKTALDIAE-GLPLSEESSY-IKECLARSGALR-ANELNQPRD-ELRSTVTQ 381

Query:   355 LSHRVAGLPQEIQELSKNVGRGQYPNGILRVQKEKDSVDEEALKEMQSLHTVVATLIATV 414
             + + V    ++ +  +KNV           + KE   +  E +    +  TVVA L ATV
Sbjct:   382 IKNDVHIQLEQTKRTNKNVHN---------ISKELRKLHREGINNATNSVTVVAVLFATV 432

Query:   415 TFAAGFTLPGGYWGKEGPIPGTPILIKNAGFQAFVVSDVIAMVLSVSAIFIYFLTPIKTL 474
              FAA FT+PGG         G+ +++  A F+ F + + +A+  S++ + +         
Sbjct:   433 AFAAIFTVPGG-----DNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGET 487

Query:   475 RQTPFLSEVPHYLILVSLLAMVVAFTTGTYAVL 507
             +    + EV + L+ ++ +   VAF   +Y V+
Sbjct:   488 KAEKRVVEVINKLMWLASMCTSVAFLASSYIVV 520

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 6.8e-18, P = 6.8e-18
 Identities = 80/296 (27%), Positives = 137/296 (46%)

Query:    62 KFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAER 121
             + V+ I+   P +L + ++ G +PLH+AA  G   IV+  +         L    +S   
Sbjct:   146 ELVKEIVCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNE-ESERM 204

Query:   122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIV 181
                 + +++ NT L+ A+  R  ++A  L+ A+   P+  N+   + L++A   G V +V
Sbjct:   205 NPYVLKDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLV 264

Query:   182 AKILQKCPSPAHEGP--------DGKTAL-HAAVYTYPTEVIKQLFLHEEKRSLTAVRDK 232
               IL+   +   +G          G+ +L H A+ T     +  + L +E  SL   RD 
Sbjct:   265 KAILKIIGNKDLKGKKSNLESKLQGQKSLAHVALVTQSIAGVLDVIL-DEYPSLMDERDI 323

Query:   233 YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSC 292
              GWT L  AA+ G       LL+      ++  +D +   +H AA  GH  +V+  +  C
Sbjct:   324 NGWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFP-IHTAAEKGHENIVEEFIKRC 382

Query:   293 DGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHV 348
              G    +++ G N LH A  +     S+ L+I   T     L + +DV+GNTPLH+
Sbjct:   383 PGSKHLLNKLGQNVLHIAAKNGKFWISNMLIINKDT---EHLGVGQDVDGNTPLHL 435

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 9.6e-18, P = 9.6e-18
 Identities = 83/301 (27%), Positives = 145/301 (48%)

Query:    62 KFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAER 121
             + V+ I+   P +L + ++K   PLH AA  G  A+V+  +     +  ++  G+   ER
Sbjct:    85 ELVKRIVSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVA----RVNEISDGLSEEER 140

Query:   122 Q---MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSV 178
             +   +  M + + NT LH A++   +  A  L+ A+    + AN +  +PL+ A   GS+
Sbjct:   141 ERVNLYAMKDIDGNTALHLALKGGHLKTAACLVKANHLASFLANNHGVSPLFTAIIAGSL 200

Query:   179 EIVAKIL----QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYG 234
              +V  ++    Q C + A +    K+ +HAA+    ++++  + L E+  SL   RD+ G
Sbjct:   201 TLVEAMMYVPGQTC-NLASKLEGRKSLVHAALKAKNSDIL-DVILSEDP-SLVNERDEEG 257

Query:   235 WTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDG 294
              T L  AAY G       LL    S  F    D +   +H+A   G + +  ++L  C  
Sbjct:   258 RTCLSVAAYVGYYKGVVNLLHRSTSNVFECDDDGSYP-IHMAVEKGRVKIFLKLLKCCPD 316

Query:   295 CCAKVDERGWNFLHFAMVSLDLLQSSGLVIK-HPTVRNSRLLIAEDVNGNTPLHVVAAVC 353
                 ++++G N LH A  S         VIK +  ++N  L++ +DV+GNTPLH+     
Sbjct:   317 SQYLLNKQGQNILHIAAKSGKTGTYLLQVIKAYDLIKND-LIMEQDVDGNTPLHLATLTW 375

Query:   354 R 354
             R
Sbjct:   376 R 376

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	547
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.003
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  116 bits (293), Expect = 3e-31
 Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 3/115 (2%)

Query: 394 EEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGK-EGPIPGTPILIKNAG-FQAFVVS 451
            E L++ ++   VVATLIATVTFAAGFT PGGYW    G   GTPIL      F+AF VS
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 452 DVIAMVLSVSAIFIYFLTPIKTLRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAV 506
           + IA V S+ A+ +  L  + +  +          L+ +SLL+++VAF  G+Y V
Sbjct: 61  NTIAFVASLVAVIL-LLYIVPSFSRRLPRLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 95.5 bits (238), Expect = 1e-23
 Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 7/129 (5%)

Query: 162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE 221
           + +  TPL++AA+NG +E+V  +L+       +  DG+T LH A      E++K L    
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL--- 60

Query: 222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASG 280
           EK +    RDK G TPLH AA +G     KLLL H    A +  +D++  T LHLAA +G
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG---ADVNARDKDGRTPLHLAAKNG 117

Query: 281 HIMVVDRIL 289
           H+ VV  +L
Sbjct: 118 HLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 95.5 bits (238), Expect = 2e-23
 Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 8/131 (6%)

Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILI--VADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
             +E+  TPLH A     ++V K+L+   AD +     + +  TPL++AA NG +EIV  
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK---DNDGRTPLHLAAKNGHLEIVKL 58

Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY 243
           +L+K         DG T LH A      +V+K L    +  +    RDK G TPLH AA 
Sbjct: 59  LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLL---KHGADVNARDKDGRTPLHLAAK 115

Query: 244 SGRELTSKLLL 254
           +G     KLLL
Sbjct: 116 NGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDR 287
            RD+ G TPLH AA +G     KLLL++    A +  KD +  T LHLAA +GH+ +V  
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENG---ADVNAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 288 ILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLH 347
           +L       A+ D+ G   LH A      L    L++KH    N+R     D +G TPLH
Sbjct: 59  LLEKGADVNAR-DKDGNTPLHLA-ARNGNLDVVKLLLKHGADVNAR-----DKDGRTPLH 111

Query: 348 VVAAVCRL 355
           + A    L
Sbjct: 112 LAAKNGHL 119

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.9 bits (165), Expect = 7e-13
 Identities = 44/181 (24%), Positives = 68/181 (37%), Gaps = 10/181 (5%)

Query: 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK 187
            +         +   S+    + ++ D H+          PL+ AA+ G  +IV  +L  
Sbjct: 37  KKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGR-LPLHSAASKGDDKIVKLLLAS 95

Query: 188 CPSPAHEGPDGKTALHAAVY-----TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA 242
                 +  DG T LH A           EV K L        +  +RD+ G TPLH AA
Sbjct: 96  GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155

Query: 243 YSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDE 301
            +G     +LLL+     A    ++   +TAL  AA +G I +V  +L            
Sbjct: 156 LNGDADIVELLLEA---GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Query: 302 R 302
            
Sbjct: 213 L 213

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 135 LHEAVRLRSVDVAKILI--VADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
           LH A +  ++++ K+L+   AD ++      + +T L++AA NG++EIV  +L+      
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL-----GDTDTALHLAARNGNLEIVKLLLEHGADVN 55

Query: 193 HEGPDGKTALHAAVYTYPTEVIKQL 217
            +  DG TALH A      E++K L
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 19/102 (18%)

Query: 86  LHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVD 145
           LHLAAK G+  +VK L          L++G          +   + +T LH A R  +++
Sbjct: 1   LHLAAKNGNLELVKLL----------LEKGAD--------VNLGDTDTALHLAARNGNLE 42

Query: 146 VAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK 187
           + K+L+     V  + +++  T L++AA NG++EIV  +L+ 
Sbjct: 43  IVKLLLEHGADV-NAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 169 LYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTA 228
           L++AA NG++E+V  +L+K         D  TALH A      E++K   L E    + A
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV--NLGDTDTALHLAARNGNLEIVK--LLLEHGADVNA 56

Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
            +DK G T LH AA +G     KLLL+H 
Sbjct: 57  -KDKDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 20/209 (9%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
           G SP+ LA K  D+  +K L+K     P      ++S                LH+AV  
Sbjct: 35  GISPIKLAMKFRDSEAIKLLMKHGA-IPDVKYPDIES---------------ELHDAVEE 78

Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTA 201
             V   + L+           ++  TPL++A     ++I+  ++ +   P     D  + 
Sbjct: 79  GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSP 138

Query: 202 LHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAA 261
           LH AV     + I+ L  H   ++   + D  G TPL  A   G     K+LLD   +  
Sbjct: 139 LHLAVMMGDIKGIELLIDH---KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID 195

Query: 262 FIGGKDRNMTALHLAAASGHIMVVDRILS 290
           +  GK+  + AL  A  +  I +V   + 
Sbjct: 196 YF-GKNGCVAALCYAIENNKIDIVRLFIK 223

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 67/315 (21%), Positives = 115/315 (36%), Gaps = 85/315 (26%)

Query: 55  EIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQR 114
            I S   + +E I+    + +  +  +  +PL  A + GDA IV+  IK           
Sbjct: 8   CIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD------- 60

Query: 115 GVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIV--ADPHV-PY------------ 159
                    +   N +   PL  A+++ + D+ K+LI    D  + P             
Sbjct: 61  ---------INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTIL 111

Query: 160 -------SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTE 212
                    +   +T L+ A   G +E +  + +       E  +G   +H A+     +
Sbjct: 112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFD 171

Query: 213 VIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTA 272
           +IK L    EK +   V+D  G +PLH+AA  G     KLL+DH                
Sbjct: 172 IIKLLL---EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH---------------- 212

Query: 273 LHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNS 332
                   HIM        C          G+  LH A     ++ +   +     + N+
Sbjct: 213 ------GNHIMN------KCK--------NGFTPLHNA-----IIHNRSAI---ELLINN 244

Query: 333 RLLIAEDVNGNTPLH 347
             +  +D++G+TPLH
Sbjct: 245 ASINDQDIDGSTPLH 259

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 53/235 (22%)

Query: 85  PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN---TPLH----- 136
           PL+LA +  +  +VK L+            G            N       TPLH     
Sbjct: 38  PLYLAKEARNIDVVKILLD----------NGAD---------INSSTKNNSTPLHYLSNI 78

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAAN--GSVEIVAKILQKCPSPA 192
           +       ++ K+L+   A+ + P     N  TPL  A +    S  IV  +L    +  
Sbjct: 79  KYNLTDVKEIVKLLLEYGANVNAPD---NNGITPLLYAISKKSNSYSIVEYLLDNGANVN 135

Query: 193 HEGPDGKTALHAAV-YTYP-TEVIKQLFLHE-------------EKRSLTAVRDKYGWTP 237
            +  DG+  LH  +       +++K L                        ++D YG+TP
Sbjct: 136 IKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTP 195

Query: 238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSS 291
           LH+A Y+      K LLD     A     ++   T LH+A  + +  +   +L++
Sbjct: 196 LHYAVYNNNPEFVKYLLD---LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN 247

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 55.0 bits (132), Expect = 5e-08
 Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 22/163 (13%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           DA+  + LH A KKGD   +K L ++                   + + ++    P+H A
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEY----------------GADVNIEDDNGCYPIHIA 164

Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
           ++    D+ K+L+    +     + N E+PL+ AA  G    +  ++       ++  +G
Sbjct: 165 IKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG 223

Query: 199 KTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA 241
            T LH A+  +    I+ L       S+   +D  G TPLHHA
Sbjct: 224 FTPLHNAI-IHNRSAIELLI---NNASIN-DQDIDGSTPLHHA 261

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA 297
           LH AA +G     KLLL+               TALHLAA +G++ +V  +L       A
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL----GDTDTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 298 KVDERGWNFLHFA 310
           K D+ G   LH A
Sbjct: 57  K-DKDGNTALHLA 68

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 19/92 (20%)

Query: 60  STKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSA 119
           + + V+ +L+    V        D+ LHLAA+ G+  IVK L++                
Sbjct: 9   NLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGAD------------ 53

Query: 120 ERQMLGMTNEEQNTPLHEAVRLRSVDVAKILI 151
               +   +++ NT LH A R  ++++ K+L+
Sbjct: 54  ----VNAKDKDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 202 LHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAA 261
           LH A      E++K L           V      T LH AA +G     KLLL+H     
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD-----VNLGDTDTALHLAARNGNLEIVKLLLEHGAD-- 53

Query: 262 FIGGKDRN-MTALHLAAASGHIMVVDRILS 290
            +  KD++  TALHLAA +G++ +V  +L 
Sbjct: 54  -VNAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 46/191 (24%), Positives = 69/191 (36%), Gaps = 45/191 (23%)

Query: 79  DAKGDSPLHLAA--KKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           D  G +PL  A   K    +IV++L          L  G        + + N +    LH
Sbjct: 103 DNNGITPLLYAISKKSNSYSIVEYL----------LDNGAN------VNIKNSDGENLLH 146

Query: 137 EAVR--LRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
             +      + + K+LI          + N +           V      L     P + 
Sbjct: 147 LYLESNKIDLKILKLLI------DKGVDINAKN---------RV----NYLLSYGVPINI 187

Query: 195 GPD--GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
             D  G T LH AVY    E +K   L  +  +   + +KYG TPLH A  +  +   KL
Sbjct: 188 -KDVYGFTPLHYAVYNNNPEFVK-YLL--DLGANPNLVNKYGDTPLHIAILNNNKEIFKL 243

Query: 253 LLDHDKSAAFI 263
           LL++  S   I
Sbjct: 244 LLNNGPSIKTI 254

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 55/200 (27%)

Query: 58  SVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVK 117
            +  +  + +L     +  +   KG++ LH A +  D  + + L+               
Sbjct: 144 IIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL-------------SY 190

Query: 118 SAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGS 177
            A   +   TN   N+PLH AV+  +  +  IL+         A+ +             
Sbjct: 191 GANVNIPDKTN---NSPLHHAVKHYNKPIVHILL------ENGASTD------------- 228

Query: 178 VEIVAKILQKCPSPAHEGPDGKTALHAAV-YTYPTEVIKQLFLHEEKRSLTAVRDKYGWT 236
                    KC         G T LH +V Y    +++K L   E    + A     G T
Sbjct: 229 ------ARDKC---------GNTPLHISVGYCKDYDILKLLL--EHGVDVNAKSYILGLT 271

Query: 237 PLHHAAYSGRELTSKLLLDH 256
            LH +  S R+L  KLLL++
Sbjct: 272 ALHSSIKSERKL--KLLLEY 289

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 37/255 (14%)

Query: 11  KGDIEPFREIARDELES--IVTDL---MNNTVLYGNITASHLTLQTEEGEIVSVSTKFVE 65
           K D+   + I  ++LE+  ++ D    +N+     N T  H   Q     +  +  K +E
Sbjct: 239 KNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKN-TPLHHASQAPS--LSRLVPKLLE 295

Query: 66  HILDLSPSVLFQADAKGDSPLHLAAKKG-DAAIVKFLIKFAKKQPRDLQRGVKSAERQML 124
              D++       + KG++PL+L AK G D   ++ LI            G        +
Sbjct: 296 RGADVNAK-----NIKGETPLYLMAKNGYDTENIRTLI----------MLGAD------V 334

Query: 125 GMTNEEQNTPLHEAVRL-RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
              +    TPLH+A  L R+ D+   L+    +V  + +  ++TP++ AA   +V I+  
Sbjct: 335 NAADRLYITPLHQASTLDRNKDIVITLLELGANVN-ARDYCDKTPIHYAAVRNNVVIINT 393

Query: 184 ILQKCPSPAHEGPDGKTALHAAVY-TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA 242
           +L              TALH A+  T P   +K L    ++ +    ++K   TPLH+A 
Sbjct: 394 LLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLI---DRGANVNSKNKDLSTPLHYAC 450

Query: 243 YSGREL-TSKLLLDH 256
               +L   ++LLD+
Sbjct: 451 KKNCKLDVIEMLLDN 465

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
             T LH+A     +++ K L+     +  + + +  T L++AA NG++E++  +L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 51/224 (22%), Positives = 81/224 (36%), Gaps = 35/224 (15%)

Query: 170 YMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAV 229
            + A+N +VE V ++L         G  GKT LH  ++    +V   + L  E  +    
Sbjct: 19  LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA 78

Query: 230 RDKYGWTPLHHAAYSGREL-TSKLLLDHDKSAAFIGGKDRN-MTALH--LAAASGHIMVV 285
            ++ G+TPLH   Y+   L   KLL+      A +  KD+   T LH  L+  + +  V+
Sbjct: 79  PERCGFTPLHLYLYNATTLDVIKLLIKA---GADVNAKDKVGRTPLHVYLSGFNINPKVI 135

Query: 286 DRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLI-------AE 338
             +L       A  D  G   L   + S +             V   RLLI       A 
Sbjct: 136 RLLLRKGADVNAL-DLYGMTPLAVLLKSRNA-----------NVELLRLLIDAGADVYAV 183

Query: 339 DVNGNTPLHVVAAVCRLSHRVAGLPQEIQELSKNVGRGQYPNGI 382
           D    + LH      +   R+         + + +  G  P   
Sbjct: 184 DDRFRSLLHHHLQSFKPRARI---------VRELIRAGCDPAAT 218

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 234 GWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHI 282
           G T LH AA SGR    K LL+       I   D +  TALH+AA +G++
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD---INRTDEDGNTALHIAAENGNL 47

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 38/166 (22%)

Query: 45  SHLTLQTEEGEIVSVSTKFVEHILDLSP---SVLFQADAKGDSPLHLAAKKGDAAIVKFL 101
           S L    EEG++ +V     E +LDL      V ++    G +PLHLA       I+K L
Sbjct: 70  SELHDAVEEGDVKAV-----EELLDLGKFADDVFYK---DGMTPLHLATILKKLDIMKLL 121

Query: 102 IKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA 161
           I      P                + N ++ +PLH AV +  +   ++LI       + A
Sbjct: 122 IAR-GADP---------------DIPNTDKFSPLHLAVMMGDIKGIELLI------DHKA 159

Query: 162 NRNNE-----TPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTAL 202
             + E     TPL +A A G + I   +L    +  + G +G  A 
Sbjct: 160 CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAA 205

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 24/173 (13%)

Query: 79  DAKGDSPLH--LAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           D  G +PLH  L+    +  +++ L++          +G       + GMT      PL 
Sbjct: 114 DKVGRTPLHVYLSGFNINPKVIRLLLR----------KGADVNALDLYGMT------PLA 157

Query: 137 EAVRLRSVDVA--KILIVADPHVPYSANRNNETPLYMAAAN--GSVEIVAKILQKCPSPA 192
             ++ R+ +V   ++LI A   V    +R   + L+    +      IV ++++    PA
Sbjct: 158 VLLKSRNANVELLRLLIDAGADVYAVDDRFR-SLLHHHLQSFKPRARIVRELIRAGCDPA 216

Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSG 245
                G T LH+       +    L L     S+ A R++YG TPLH+AA   
Sbjct: 217 ATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA-RNRYGQTPLHYAAVFN 268

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 64/247 (25%), Positives = 87/247 (35%), Gaps = 55/247 (22%)

Query: 132 NTPLHEAVRLRSVDVAKI---LIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC 188
            TPLH  +   S  V  I   L+ A   V  +  R   TPL++   N +   V K+L K 
Sbjct: 48  KTPLHLYLHYSSEKVKDIVRLLLEAGADVN-APERCGFTPLHLYLYNATTLDVIKLLIKA 106

Query: 189 PSPAHEGPD-------GKTALHA--AVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH 239
                 G D       G+T LH   + +    +VI+   L  +   + A  D YG TPL 
Sbjct: 107 ------GADVNAKDKVGRTPLHVYLSGFNINPKVIR--LLLRKGADVNA-LDLYGMTPLA 157

Query: 240 HAAYSGR---ELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSC---- 292
               S     EL  +LL+D           DR  + LH      H +   +  +      
Sbjct: 158 VLLKSRNANVELL-RLLIDAGADV--YAVDDRFRSLLH------HHLQSFKPRARIVREL 208

Query: 293 --DGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIA------EDVNGNT 344
              GC    D    + L    +      SS    K   V    LLIA       +  G T
Sbjct: 209 IRAGC----DPAATDMLGNTPLHSMATGSS---CKRSLVLP--LLIAGISINARNRYGQT 259

Query: 345 PLHVVAA 351
           PLH  A 
Sbjct: 260 PLHYAAV 266

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 16/70 (22%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
           G + LH AA  G   +VK+L          L++GV       +  T+E+ NT LH A   
Sbjct: 1   GRTALHKAAISGRLELVKYL----------LEKGVD------INRTDEDGNTALHIAAEN 44

Query: 142 RSVDVAKILI 151
            +++V K+L+
Sbjct: 45  GNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 81  KGDSPLHLAAKKGDAAIVKFLIKF 104
            G++PLHLAA+ G   +VK L++ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 18/198 (9%)

Query: 164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEK 223
            ++  L  A   G ++I  ++L    +P  E  DG + +  A+    +E IK L  H   
Sbjct: 1   MDQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHG-- 58

Query: 224 RSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIM 283
            ++  V+     + LH A   G     + LLD  K A  +  KD  MT LHLA     + 
Sbjct: 59  -AIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD-GMTPLHLATILKKLD 116

Query: 284 VVDRILS-SCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNG 342
           ++  +++   D      D+  ++ LH A++  D ++   L+I H    +      ED  G
Sbjct: 117 IMKLLIARGADPDIPNTDK--FSPLHLAVMMGD-IKGIELLIDHKACLD-----IEDCCG 168

Query: 343 NTPLHVVAA-----VCRL 355
            TPL +  A     +C++
Sbjct: 169 CTPLIIAMAKGDIAICKM 186

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 28/227 (12%)

Query: 134 PLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAAN----GSVEIVAKILQKCP 189
           PLH+AV  R++DV K L+    +V    +R+  TPL++        G  E++  I +   
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDL-TPLHIICKEPNKLGMKEMIRSINKCSV 98

Query: 190 SPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELT 249
                      A+  A      E+ K +  +  K   T +   Y                
Sbjct: 99  FYTLV------AIKDAFNNRNVEIFKIILTNRYKNIQT-IDLVYIDKKSKDDIIEAE--I 149

Query: 250 SKLLLDHDKSAAFIGGKDRNM--TALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNF- 306
           +KLLL +    A I  KDR+   TALH A  +    + + +LS   G    + ++  N  
Sbjct: 150 TKLLLSY---GADINMKDRHKGNTALHYATENKDQRLTELLLSY--GANVNIPDKTNNSP 204

Query: 307 LHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVC 353
           LH A      ++     I H  + N     A D  GNTPLH+    C
Sbjct: 205 LHHA------VKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYC 245

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 150 LIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA 205
           L+   P    + + N  TPL++AA  G++E+V  +L+          DG TAL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.4 bits (91), Expect = 0.003
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 23/154 (14%)

Query: 4   KLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKF 63
            L  AA+KGD +  + +     +    D   +T L+      +        E+  +  + 
Sbjct: 76  PLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGN--IEVAKLLLEA 133

Query: 64  VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQM 123
                     V    D  G++PLH AA  GDA IV+ L++       +            
Sbjct: 134 GAD-----LDVNNLRDEDGNTPLHWAALNGDADIVELLLE--AGADPNS----------- 175

Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV 157
               N    T L  A +   +++ K+L+    H+
Sbjct: 176 ---RNSYGVTALDPAAKNGRIELVKLLLDKGLHL 206

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 269 NMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFA 310
             TALH AA SG + +V  +L        + DE G   LH A
Sbjct: 1   GRTALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIA 41

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	547
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
PF13962	113	PGG: Domain of unknown function	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.93
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.88
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.88
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
PHA02741	169	hypothetical protein; Provisional	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.81
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.81
PHA02741	169	hypothetical protein; Provisional	99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.7
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.66
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.62
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.56
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.5
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.41
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.37
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.35
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.28
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.23
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.2
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.2
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.2
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.17
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.1
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.09
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.65
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.54
PF13606	30	Ank_3: Ankyrin repeat	98.46
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.46
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.44
PF13606	30	Ank_3: Ankyrin repeat	98.43
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.41
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.36
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.34
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.32
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.31
KOG0522	560	consensus Ankyrin repeat protein [General function	98.31
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.29
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.26
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.25
KOG0522	560	consensus Ankyrin repeat protein [General function	98.1
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.09
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.03
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.92
KOG2384	223	consensus Major histocompatibility complex protein	97.85
KOG0511	516	consensus Ankyrin repeat protein [General function	97.83
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.8
KOG0511	516	consensus Ankyrin repeat protein [General function	97.74
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.72
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.52
KOG2384	223	consensus Major histocompatibility complex protein	97.04
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.03
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.99
KOG2505	591	consensus Ankyrin repeat protein [General function	95.67
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.49
KOG2505	591	consensus Ankyrin repeat protein [General function	93.88
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.79
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	91.27
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	90.29
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	89.26
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.47
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.91

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7.2e-42  Score=348.58  Aligned_cols=297  Identities=18%  Similarity=0.146  Sum_probs=254.3

Q ss_pred             HHHHHH--HcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977            4 KLFEAA--AKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK   81 (547)
Q Consensus         4 ~L~~A~--~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~   81 (547)
                      .||.++  ..++.++++.|+++|.+++.++.+|.|||       |+|+..  |+.++  +++|++    .+.+++.+|.+
T Consensus        40 ~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpL-------h~Aa~~--g~~ei--v~lLL~----~GAdin~~d~~  104 (446)
T PHA02946         40 ILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPL-------HIASKI--NNNRI--VAMLLT----HGADPNACDKQ  104 (446)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHH-------HHHHHc--CCHHH--HHHHHH----CcCCCCCCCCC
Confidence            456544  45577899999999999999999999999       999999  99999  999977    67888999999


Q ss_pred             CChHHHHHHHcCC--HHHHHHHHHHhhcCCchhhhhhhhHHHHHhc-ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC
Q 008977           82 GDSPLHLAAKKGD--AAIVKFLIKFAKKQPRDLQRGVKSAERQMLG-MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP  158 (547)
Q Consensus        82 g~t~Lh~Aa~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~-~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~  158 (547)
                      |.||||+|+..++  .+++++|+++|++                ++ ..+..|.|||| |+..|+.+++++|++.|.+.+
T Consensus       105 g~TpLh~A~~~~~~~~e~v~lLl~~Gad----------------in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~  167 (446)
T PHA02946        105 HKTPLYYLSGTDDEVIERINLLVQYGAK----------------INNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR  167 (446)
T ss_pred             CCCHHHHHHHcCCchHHHHHHHHHcCCC----------------cccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc
Confidence            9999999998764  8999999999887                33 35889999998 667799999999999999886


Q ss_pred             CCCCCCCCcHHHHHHHCCC--HHHHHHHHHhCCCCCCCCCCCchHHHHHHhcC--CHHHHHHHHcccccchhhhhhccCC
Q 008977          159 YSANRNNETPLYMAAANGS--VEIVAKILQKCPSPAHEGPDGKTALHAAVYTY--PTEVIKQLFLHEEKRSLTAVRDKYG  234 (547)
Q Consensus       159 ~~~~~~g~tpL~~A~~~g~--~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~v~~Ll~~~~~~~~~~~~d~~g  234 (547)
                       ..|..|+||||+|+..++  .+++++|+++|++++.+|.+|.||||+|+..+  +.++++.|+.    +..++.+|..|
T Consensus       168 -~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~----gadin~~d~~G  242 (446)
T PHA02946        168 -IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP----STDVNKQNKFG  242 (446)
T ss_pred             -ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc----CCCCCCCCCCC
Confidence             789999999999987554  68999999999999999999999999999976  7889998882    35678899999


Q ss_pred             CcHHhHHHhcCC-hHHHHHHhccCCCcce-------------------ecCCCCCchHHHHHHHcCCHHHHHHHhhcCCC
Q 008977          235 WTPLHHAAYSGR-ELTSKLLLDHDKSAAF-------------------IGGKDRNMTALHLAAASGHIMVVDRILSSCDG  294 (547)
Q Consensus       235 ~tpLh~A~~~g~-~~~v~~Ll~~~~~~~~-------------------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  294 (547)
                      .||||+|+..++ .++++.|+++|.....                   ......|.||||+|+.+|+.+++++|+++++ 
T Consensus       243 ~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-  321 (446)
T PHA02946        243 DSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI-  321 (446)
T ss_pred             CCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-
Confidence            999999999988 5899999998754211                   1112357899999999999999999998753 


Q ss_pred             ccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHh
Q 008977          295 CCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       295 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                             .|+||||+|+..++.+      +...++.+++++|.+ .+|+||||+|++.
T Consensus       322 -------~~~t~L~~A~~~~~~~------~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~  365 (446)
T PHA02946        322 -------ICEDAMYYAVLSEYET------MVDYLLFNHFSVDSV-VNGHTCMSECVRL  365 (446)
T ss_pred             -------ccccHHHHHHHhCHHH------HHHHHHHCCCCCCCc-cccccHHHHHHHc
Confidence                   5799999999998753      446777889999986 6899999999987

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.5e-41  Score=362.56  Aligned_cols=309  Identities=20%  Similarity=0.266  Sum_probs=211.0

Q ss_pred             HHHHHHHHcCCchHHHHHhhhhhh-hhhcccCCCceeccCCccceeEeeec-----------------------------
Q 008977            3 RKLFEAAAKGDIEPFREIARDELE-SIVTDLMNNTVLYGNITASHLTLQTE-----------------------------   52 (547)
Q Consensus         3 ~~L~~A~~~g~~~~l~~ll~~~~~-~~~~~~~g~t~L~~~~~~lh~A~~~~-----------------------------   52 (547)
                      ++||+|++.|+.|+|+.|++++.+ ....+..|.|||       |+|+...                             
T Consensus        43 t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpL-------h~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  115 (682)
T PHA02876         43 TAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTL-------HTICIIPNVMDIVISLTLDCDIILDIKYASIILNKH  115 (682)
T ss_pred             hHHHHHHHHHhhhHHHHHHHhCcccchhhchhhcccc-------ccccCCCCccccccccccchhhcccccHHHHHHHHH
Confidence            689999999999999999998765 456677788988       9887330                             


Q ss_pred             ---------------------------------------CCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcC
Q 008977           53 ---------------------------------------EGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKG   93 (547)
Q Consensus        53 ---------------------------------------~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g   93 (547)
                                                             .|+.++  +++|++    .+.+++.+|..|.||||+||..|
T Consensus       116 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i--~k~Ll~----~Gadvn~~d~~G~TpLh~Aa~~G  189 (682)
T PHA02876        116 KLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLI--AEMLLE----GGADVNAKDIYCITPIHYAAERG  189 (682)
T ss_pred             HHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHH--HHHHHh----CCCCCCCCCCCCCCHHHHHHHCC
Confidence                                                   133334  444443    67888999999999999999999


Q ss_pred             CHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCC------------------
Q 008977           94 DAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADP------------------  155 (547)
Q Consensus        94 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~------------------  155 (547)
                      +.++|++|+++|++                ++..+..|.||||.|+..|+.++++.|++.++                  
T Consensus       190 ~~~iv~~LL~~Gad----------------~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~  253 (682)
T PHA02876        190 NAKMVNLLLSYGAD----------------VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDL  253 (682)
T ss_pred             CHHHHHHHHHCCCC----------------cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCH
Confidence            99999999999887                33445566666666666666665555554333                  


Q ss_pred             -----------CCCCCCCCCCCcHHHHHHHCCCH-HHHHHHHHhCCCCCCCCCCCchHHHHHHhcC-CHHHHHHHHcccc
Q 008977          156 -----------HVPYSANRNNETPLYMAAANGSV-EIVAKILQKCPSPAHEGPDGKTALHAAVYTY-PTEVIKQLFLHEE  222 (547)
Q Consensus       156 -----------~~~~~~~~~g~tpL~~A~~~g~~-~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~-~~~~v~~Ll~~~~  222 (547)
                                 +++ ..+..|.||||+|+..|+. +++++|++.|++++..|..|.||||+|+..| ..++++.|+..  
T Consensus       254 ~~~~~Ll~~g~~vn-~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~--  330 (682)
T PHA02876        254 ETSLLLYDAGFSVN-SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIML--  330 (682)
T ss_pred             HHHHHHHHCCCCCC-CCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc--
Confidence                       222 3455677777777777664 4677777777777777777777777777766 46667766633  


Q ss_pred             cchhhhhhccCCCcHHhHHHhc-CChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccC
Q 008977          223 KRSLTAVRDKYGWTPLHHAAYS-GRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDE  301 (547)
Q Consensus       223 ~~~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~  301 (547)
                       +...+..|..|.||||+|+.. ++.++++.|++.|.+++..+  ..|.||||+|+..|+.++++.|++.+++. +..+.
T Consensus       331 -gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d--~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~  406 (682)
T PHA02876        331 -GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARD--YCDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQ  406 (682)
T ss_pred             -CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCC--CCCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCC
Confidence             333455666777777777664 35666777777766665443  34777777777777777777777776665 33466


Q ss_pred             CCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHh
Q 008977          302 RGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       302 ~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                      .|+||||+|+..++..     .....+.+.|+++|.+|.+|+||||+|++.
T Consensus       407 ~g~T~Lh~A~~~~~~~-----~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~  452 (682)
T PHA02876        407 KIGTALHFALCGTNPY-----MSVKTLIDRGANVNSKNKDLSTPLHYACKK  452 (682)
T ss_pred             CCCchHHHHHHcCCHH-----HHHHHHHhCCCCCCcCCCCCChHHHHHHHh
Confidence            6777777776655421     122345566677777777777777777664

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=4e-41  Score=336.84  Aligned_cols=306  Identities=25%  Similarity=0.297  Sum_probs=264.7

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK   81 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~   81 (547)
                      +.+||.|++.+..+.++.|++.|++....+.++++++       |+|+..  |+.++  .+.|++    .+.+++..|.+
T Consensus        89 n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~apl-------h~A~~~--~~~s~--L~~Ll~----~~~dvnl~de~  153 (929)
T KOG0510|consen   89 NTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPL-------HLAADS--GNYSC--LKLLLD----YGADVNLEDEN  153 (929)
T ss_pred             CchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCch-------hhcccc--chHHH--HHHHHH----hcCCccccccC
Confidence            4678999999999999999999999999999999999       999999  99999  999977    45888999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHh-----hCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIV-----ADPH  156 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~-----~~~~  156 (547)
                      |.||||+||+.++.|..+.|++.+++++                ..|.+|++|+|.|++.|..++.+..+.     ++..
T Consensus       154 ~~TpLh~A~~~~~~E~~k~Li~~~a~~~----------------K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~  217 (929)
T KOG0510|consen  154 GFTPLHLAARKNKVEAKKELINKGADPC----------------KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH  217 (929)
T ss_pred             CCchhhHHHhcChHHHHHHHHhcCCCCC----------------cccCcCCchHHHHHHhcchhhhhhhhccccchhhcc
Confidence            9999999999999998899999988854                358899999999999999999999998     4444


Q ss_pred             CCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCC---------------CCCCCCCchHHHHHHhcCCHHHHHHHHccc
Q 008977          157 VPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP---------------AHEGPDGKTALHAAVYTYPTEVIKQLFLHE  221 (547)
Q Consensus       157 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~---------------~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~  221 (547)
                      ++ ..+..|.+|||.|+..|+.++++.+++.|...               +..|++|.||||+|++.|+.++++.|+   
T Consensus       218 in-~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll---  293 (929)
T KOG0510|consen  218 IN-FDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLL---  293 (929)
T ss_pred             cc-cccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHH---
Confidence            44 56788999999999999999999999988543               346889999999999999999999999   


Q ss_pred             ccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccc--cc
Q 008977          222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA--KV  299 (547)
Q Consensus       222 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~--~~  299 (547)
                      ..+...+.+++++.||||.|++.|+...++.|++..........|..|.||||+|+++||..+++.|++.|+...+  ..
T Consensus       294 ~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~  373 (929)
T KOG0510|consen  294 GFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEA  373 (929)
T ss_pred             HcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccccc
Confidence            4455677888999999999999999999999999222222334455799999999999999999999999998875  55


Q ss_pred             cCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHH
Q 008977          300 DERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHV  348 (547)
Q Consensus       300 d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~  348 (547)
                      |.+|.||||.|++.|+..      ....++.+|+++..+|++|.+++|+
T Consensus       374 D~dg~TaLH~Aa~~g~~~------av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  374 DSDGNTALHLAAKYGNTS------AVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             ccCCchhhhHHHHhccHH------HHHHHHHcCCceeeccccccccccc
Confidence            999999999999999853      4467788899999999999999996

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-40  Score=333.62  Aligned_cols=290  Identities=27%  Similarity=0.309  Sum_probs=258.6

Q ss_pred             hhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhh
Q 008977           27 SIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAK  106 (547)
Q Consensus        27 ~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~  106 (547)
                      ....|..|+++|       |+|+..  ...+.  +++|++    .|.+..-.|.++.+|+|+|+..|+.+..+.|++++.
T Consensus        81 ~~a~D~~~n~~l-------~~a~~~--~~~~~--i~~Lls----~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~  145 (929)
T KOG0510|consen   81 SYAKDSADNTPL-------HAAVEY--NQGDK--IQVLLS----YGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGA  145 (929)
T ss_pred             hhhhhcccCchh-------HHHhhc--chHHH--HHHHHh----cCCCCChhhhhccCchhhccccchHHHHHHHHHhcC
Confidence            345566888999       999999  99999  999987    688889999999999999999999999999999987


Q ss_pred             cCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHH
Q 008977          107 KQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQ  186 (547)
Q Consensus       107 ~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~  186 (547)
                      +                ++..|+.|.||||.||..++.|..+.|++.|++.. ..|.+|..|+|.|+++|..|+.+.+++
T Consensus       146 d----------------vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~iH~aa~s~s~e~mEi~l~  208 (929)
T KOG0510|consen  146 D----------------VNLEDENGFTPLHLAARKNKVEAKKELINKGADPC-KSDIDGNFPIHEAARSGSKECMEIFLP  208 (929)
T ss_pred             C----------------ccccccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cccCcCCchHHHHHHhcchhhhhhhhc
Confidence            6                67889999999999999999998899999999986 889999999999999999999999998


Q ss_pred             -----hCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccc------------hhhhhhccCCCcHHhHHHhcCChHH
Q 008977          187 -----KCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKR------------SLTAVRDKYGWTPLHHAAYSGRELT  249 (547)
Q Consensus       187 -----~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~------------~~~~~~d~~g~tpLh~A~~~g~~~~  249 (547)
                           ++..++..+..+.+|||.|+..|+.++++.+++.+...            .+++..|.+|.||||+|++.|+.+.
T Consensus       209 ~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~s  288 (929)
T KOG0510|consen  209 EHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPES  288 (929)
T ss_pred             cccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhH
Confidence                 66788889999999999999999999999999655443            3455679999999999999999999


Q ss_pred             HHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhh-cCCCccccccCCCCcHHHHHHHhcCcccccceeeeccc
Q 008977          250 SKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS-SCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPT  328 (547)
Q Consensus       250 v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l  328 (547)
                      ++.|+..|+++...+.  ++.||||.||+.|+++.|+.||+ .+....+..|..|+||||+|+++|+..      +.+.+
T Consensus       289 vd~Ll~~Ga~I~~kn~--d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~------v~qlL  360 (929)
T KOG0510|consen  289 VDNLLGFGASINSKNK--DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDR------VVQLL  360 (929)
T ss_pred             HHHHHHcCCcccccCC--CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHH------HHHHH
Confidence            9999999998877654  59999999999999999999999 666667777999999999999998853      44677


Q ss_pred             cccccccc---ccccCCCchhHHHHHhhccc
Q 008977          329 VRNSRLLI---AEDVNGNTPLHVVAAVCRLS  356 (547)
Q Consensus       329 ~~~~~~~~---~~d~~G~T~Lh~A~~~~~~~  356 (547)
                      ++.|++..   ..|.+|+||||+|++.|..+
T Consensus       361 l~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~  391 (929)
T KOG0510|consen  361 LNKGALFLNMSEADSDGNTALHLAAKYGNTS  391 (929)
T ss_pred             HhcChhhhcccccccCCchhhhHHHHhccHH
Confidence            78888877   56999999999999997543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.2e-40  Score=355.32  Aligned_cols=323  Identities=18%  Similarity=0.180  Sum_probs=274.9

Q ss_pred             HHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCC
Q 008977            3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKG   82 (547)
Q Consensus         3 ~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g   82 (547)
                      +.++.|+..|+.++++.|++.|++++..+..|.|||       |+|+..  |+.++  +++|++    .+..++..+..|
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpL-------h~Aa~~--G~~~i--v~~LL~----~Gad~n~~~~~g  211 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPI-------HYAAER--GNAKM--VNLLLS----YGADVNIIALDD  211 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHH-------HHHHHC--CCHHH--HHHHHH----CCCCcCccCCCC
Confidence            457889999999999999999999999998999999       999999  99999  999977    678888899999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchh---hhhhh----hHHH------HHhcccccCCCCHhHHHHHcCCH-HHHH
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDL---QRGVK----SAER------QMLGMTNEEQNTPLHEAVRLRSV-DVAK  148 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~---~~~~~----~~~~------~~l~~~~~~g~t~Lh~A~~~g~~-~iv~  148 (547)
                      .||||+|+..|+.++++.|++.+.+.....   .....    ....      ..++..+..|.||||+|+..|+. ++++
T Consensus       212 ~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~  291 (682)
T PHA02876        212 LSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVP  291 (682)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHH
Confidence            999999999999999999998765532210   00000    0000      12456778899999999999996 6999


Q ss_pred             HHHhhCCCCCCCCCCCCCcHHHHHHHCC-CHHHHHHHHHhCCCCCCCCCCCchHHHHHHhc-CCHHHHHHHHcccccchh
Q 008977          149 ILIVADPHVPYSANRNNETPLYMAAANG-SVEIVAKILQKCPSPAHEGPDGKTALHAAVYT-YPTEVIKQLFLHEEKRSL  226 (547)
Q Consensus       149 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g-~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~-~~~~~v~~Ll~~~~~~~~  226 (547)
                      +|++.|++++ ..|..|.||||+|+..| +.++++.|++.|++++..+..|.||||+|+.. ++.++++.|+.   .+..
T Consensus       292 lLl~~gadin-~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~---~gad  367 (682)
T PHA02876        292 KLLERGADVN-AKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLE---LGAN  367 (682)
T ss_pred             HHHHCCCCCC-CcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHH---cCCC
Confidence            9999999987 78899999999999999 59999999999999999999999999999985 46788888884   4455


Q ss_pred             hhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCC-HHHHHHHhhcCCCccccccCCCCc
Q 008977          227 TAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH-IMVVDRILSSCDGCCAKVDERGWN  305 (547)
Q Consensus       227 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~~~~~~d~~g~t  305 (547)
                      ++.+|..|.||||+|+..|+.+++++|+++|++.+....  .|.||||+|+..++ .++++.|++.+.+. +.+|..|+|
T Consensus       368 in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~--~g~T~Lh~A~~~~~~~~~vk~Ll~~gadi-n~~d~~G~T  444 (682)
T PHA02876        368 VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQ--KIGTALHFALCGTNPYMSVKTLIDRGANV-NSKNKDLST  444 (682)
T ss_pred             CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCC--CCCchHHHHHHcCCHHHHHHHHHhCCCCC-CcCCCCCCh
Confidence            778899999999999999999999999999998876544  58999999998666 57799999998875 567999999


Q ss_pred             HHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHh
Q 008977          306 FLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       306 ~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                      |||+|+..+...     .+...+++.|++++.+|..|+||||+|+..
T Consensus       445 pLh~Aa~~~~~~-----~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        445 PLHYACKKNCKL-----DVIEMLLDNGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             HHHHHHHhCCcH-----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHh
Confidence            999999876421     344677888999999999999999999875

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-39  Score=335.29  Aligned_cols=298  Identities=20%  Similarity=0.209  Sum_probs=245.3

Q ss_pred             CCHHHHHHHHcCCchHHHHHhhh-hhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccc
Q 008977            1 MDRKLFEAAAKGDIEPFREIARD-ELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQAD   79 (547)
Q Consensus         1 ~~~~L~~A~~~g~~~~l~~ll~~-~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~   79 (547)
                      |+..|..|+..||++.++.|++. +..++..+..|.|||       |.|+..  |+.++  +++|++    .+..++..+
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL-------~~A~~~--g~~~i--v~~Ll~----~Ga~~n~~~   65 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPL-------IDAIRS--GDAKI--VELFIK----HGADINHIN   65 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHH-------HHHHHc--CCHHH--HHHHHH----CCCCCCCCC
Confidence            56789999999999999999976 455666777888888       999999  99999  999976    677888899


Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC
Q 008977           80 AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY  159 (547)
Q Consensus        80 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~  159 (547)
                      ..|.||||.|+..|+.+++++|+++|.+...                          .+....+.++++.|++.|.+++ 
T Consensus        66 ~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~--------------------------~~~~~~~~~~i~~ll~~g~d~n-  118 (434)
T PHA02874         66 TKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI--------------------------LPIPCIEKDMIKTILDCGIDVN-  118 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc--------------------------chhccCCHHHHHHHHHCcCCCC-
Confidence            9999999999999999999999998765211                          1223456788999999998886 


Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHh
Q 008977          160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH  239 (547)
Q Consensus       160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh  239 (547)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++.|++++   ...+..+..|.||||
T Consensus       119 ~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g---~~~n~~~~~g~tpL~  195 (434)
T PHA02874        119 IKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG---AYANVKDNNGESPLH  195 (434)
T ss_pred             CCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC---CCCCCCCCCCCCHHH
Confidence            67888999999999999999999999999999999999999999999999999999998443   345567888999999


Q ss_pred             HHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccc
Q 008977          240 HAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQS  319 (547)
Q Consensus       240 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~  319 (547)
                      +|+..|+.+++++|++.|++.....  ..|.||||.|+..+. +.+++|+ .+.+. +.+|.+|+||||+|+..+...  
T Consensus       196 ~A~~~g~~~iv~~Ll~~g~~i~~~~--~~g~TpL~~A~~~~~-~~i~~Ll-~~~~i-n~~d~~G~TpLh~A~~~~~~~--  268 (434)
T PHA02874        196 NAAEYGDYACIKLLIDHGNHIMNKC--KNGFTPLHNAIIHNR-SAIELLI-NNASI-NDQDIDGSTPLHHAINPPCDI--  268 (434)
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcCCC--CCCCCHHHHHHHCCh-HHHHHHH-cCCCC-CCcCCCCCCHHHHHHhcCCcH--
Confidence            9999999999999999988765443  358999999998765 5666666 34443 567889999999998865321  


Q ss_pred             cceeeecccccccccccccccCCCchhHHHHHhh
Q 008977          320 SGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVC  353 (547)
Q Consensus       320 ~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~  353 (547)
                         .+...++..+++++.+|..|+||||+|++.+
T Consensus       269 ---~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        269 ---DIIDILLYHKADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             ---HHHHHHHHCcCCCCCCCCCCCCHHHHHHHhC
Confidence               3445677788999999999999999998763

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3e-39  Score=338.40  Aligned_cols=308  Identities=18%  Similarity=0.108  Sum_probs=212.9

Q ss_pred             HcCCchHHHHHhhhh-hhhhhc-ccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHH
Q 008977           10 AKGDIEPFREIARDE-LESIVT-DLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLH   87 (547)
Q Consensus        10 ~~g~~~~l~~ll~~~-~~~~~~-~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh   87 (547)
                      +.++.+++++|+++| ++++.. +..|.|||       |.|+....++.++  +++|++    .+.+++.+|..|.||||
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpL-------H~A~~n~~~~~eI--VklLLe----~GADVN~kD~~G~TPLH  217 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGIL-------HAYLGNMYVDIDI--LEWLCN----NGVNVNLQNNHLITPLH  217 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHH-------HHHHHhccCCHHH--HHHHHH----cCCCCCCCCCCCCCHHH
Confidence            569999999999999 999987 77899999       9876542266788  999976    68889999999999999


Q ss_pred             HHHHcCC--HHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHH---HcCCHHHHHHHHhhCCCCCCCCC
Q 008977           88 LAAKKGD--AAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAV---RLRSVDVAKILIVADPHVPYSAN  162 (547)
Q Consensus        88 ~Aa~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~---~~g~~~iv~~Ll~~~~~~~~~~~  162 (547)
                      +|++.|+  .++|++|+++|++                ++.++..|.||||.|+   ..++.++++.|++.+....   .
T Consensus       218 ~Aa~~g~~~~eIVklLLe~GAD----------------VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~---~  278 (764)
T PHA02716        218 TYLITGNVCASVIKKIIELGGD----------------MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK---V  278 (764)
T ss_pred             HHHHcCCCCHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc---c
Confidence            9999995  5899999999987                6778999999999875   3456666666665432211   0


Q ss_pred             CCCCcHHH---HHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh--cCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          163 RNNETPLY---MAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY--TYPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       163 ~~g~tpL~---~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~--~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                      .....+++   .|+..|+.+++++|+++|++++.+|..|+||||+|+.  .++.+++++|+++   +..++.+|..|+||
T Consensus       279 ~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~---GADIN~kD~~G~TP  355 (764)
T PHA02716        279 KNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEY---GNDLNEPDNIGNTV  355 (764)
T ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHc---CCCCccCCCCCCCH
Confidence            11112232   2556666666666666666666666666666666543  3456666666632   23455566666666


Q ss_pred             HhHHHh--------------cCChHHHHHHhccCCCcceecCCCCCchHHHHH----HHcCCHHHHHHHhhcCCC-----
Q 008977          238 LHHAAY--------------SGRELTSKLLLDHDKSAAFIGGKDRNMTALHLA----AASGHIMVVDRILSSCDG-----  294 (547)
Q Consensus       238 Lh~A~~--------------~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A----~~~g~~~~v~~Ll~~~~~-----  294 (547)
                      ||+|+.              .++.+++++|+++|++++..+  ..|.||||.+    ...++.++++.|++.+..     
T Consensus       356 LH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn--~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~  433 (764)
T PHA02716        356 LHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVN--CLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKH  433 (764)
T ss_pred             HHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcC--CCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhh
Confidence            666654              245666666666666554433  3466666631    223456666666553210     


Q ss_pred             -------------------------------------------------------ccccccCCCCcHHHHHHHhcCcccc
Q 008977          295 -------------------------------------------------------CCAKVDERGWNFLHFAMVSLDLLQS  319 (547)
Q Consensus       295 -------------------------------------------------------~~~~~d~~g~t~Lh~A~~~~~~~~~  319 (547)
                                                                             ..+..|..|+||||+|+..++....
T Consensus       434 ~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v  513 (764)
T PHA02716        434 RILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANI  513 (764)
T ss_pred             hhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccch
Confidence                                                                   1234578899999999998874211


Q ss_pred             cceeeecccccccccccccccCCCchhHHHHHhhcc
Q 008977          320 SGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRL  355 (547)
Q Consensus       320 ~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~~  355 (547)
                       .......|++.|+++|.+|.+|+||||+|++.++.
T Consensus       514 -~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        514 -VMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             -hHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCc
Confidence             01123567789999999999999999999998653

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.3e-38  Score=320.89  Aligned_cols=273  Identities=15%  Similarity=0.152  Sum_probs=233.4

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccc-cccc
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLF-QADA   80 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~-~~~~   80 (547)
                      .++||.|++.|+.++++.|+++|++++.++.+|.|||       |+|+....+..++  +++|++    .+..++ ..|.
T Consensus        73 ~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpL-------h~A~~~~~~~~e~--v~lLl~----~Gadin~~~d~  139 (446)
T PHA02946         73 NYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL-------YYLSGTDDEVIER--INLLVQ----YGAKINNSVDE  139 (446)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHH-------HHHHHcCCchHHH--HHHHHH----cCCCcccccCC
Confidence            3689999999999999999999999999999999999       9998772234677  888865    566666 4789


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCC--HHHHHHHHhhCCCCC
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS--VDVAKILIVADPHVP  158 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~--~~iv~~Ll~~~~~~~  158 (547)
                      .|.|||| ||..|+.+++++|++.+++                ++.+|..|.||||+|+..++  .+++++|++.|++++
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad----------------~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin  202 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFE----------------ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS  202 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhcccc----------------ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc
Confidence            9999998 6778999999999999876                56789999999999987654  689999999999987


Q ss_pred             CCCCCCCCcHHHHHHHCC--CHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC-HHHHHHHHcccccc-----------
Q 008977          159 YSANRNNETPLYMAAANG--SVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP-TEVIKQLFLHEEKR-----------  224 (547)
Q Consensus       159 ~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~v~~Ll~~~~~~-----------  224 (547)
                       .+|..|.||||+|+..|  +.+++++|++ |++++.+|..|.||||+|+..++ .++++.|+.++...           
T Consensus       203 -~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~  280 (446)
T PHA02946        203 -KPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFY  280 (446)
T ss_pred             -ccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHc
Confidence             78999999999999986  7899999985 89999999999999999999988 47888888554210           


Q ss_pred             ---h---hhhhh-ccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccc
Q 008977          225 ---S---LTAVR-DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA  297 (547)
Q Consensus       225 ---~---~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  297 (547)
                         .   ..+.. +..|.||||+|+..|+.+++++|+++|.         .|.||||+|+..|+.++++.|+.++.+...
T Consensus       281 ~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~---------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~  351 (446)
T PHA02946        281 DRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI---------ICEDAMYYAVLSEYETMVDYLLFNHFSVDS  351 (446)
T ss_pred             CchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC---------ccccHHHHHHHhCHHHHHHHHHHCCCCCCC
Confidence               0   11222 2457899999999999999999999863         478999999999999999999999998755


Q ss_pred             cccCCCCcHHHHHHHhcCcc
Q 008977          298 KVDERGWNFLHFAMVSLDLL  317 (547)
Q Consensus       298 ~~d~~g~t~Lh~A~~~~~~~  317 (547)
                        +.+|.||||+|++.++.+
T Consensus       352 --~~~G~t~l~~a~~~~~~~  369 (446)
T PHA02946        352 --VVNGHTCMSECVRLNNPV  369 (446)
T ss_pred             --ccccccHHHHHHHcCCHH
Confidence              358999999999999864

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-38  Score=330.38  Aligned_cols=289  Identities=18%  Similarity=0.158  Sum_probs=249.6

Q ss_pred             HHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCC---ceecchhhHHHHHhhcCCccccccccCC
Q 008977            6 FEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEG---EIVSVSTKFVEHILDLSPSVLFQADAKG   82 (547)
Q Consensus         6 ~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g---~~~~~~~~~L~~~~~~~~~~~~~~~~~g   82 (547)
                      +.+..+++++.++.|++.|++++..+..|.|||       |+|+..  +   +.++  +++|++    .+.+++.++..|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~L-------h~a~~~--~~~~~~~i--v~~Ll~----~Gadin~~~~~g   83 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPL-------HLYLHY--SSEKVKDI--VRLLLE----AGADVNAPERCG   83 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHH-------HHHHHh--cCCChHHH--HHHHHH----CCCCCCCCCCCC
Confidence            456889999999999999999999998899999       999999  7   7888  888866    788899999999


Q ss_pred             ChHHHHHHHcC-CHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHH--HcCCHHHHHHHHhhCCCCCC
Q 008977           83 DSPLHLAAKKG-DAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAV--RLRSVDVAKILIVADPHVPY  159 (547)
Q Consensus        83 ~t~Lh~Aa~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~  159 (547)
                      .||||+|+..| +.+++++|+++|++                ++.++..|.||||+|+  ..++.+++++|+++|++++ 
T Consensus        84 ~TpLh~A~~~~~~~~iv~lLl~~ga~----------------in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-  146 (471)
T PHA03095         84 FTPLHLYLYNATTLDVIKLLIKAGAD----------------VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-  146 (471)
T ss_pred             CCHHHHHHHcCCcHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-
Confidence            99999999999 59999999999887                6678999999999999  5668999999999999987 


Q ss_pred             CCCCCCCcHHHHHHHCC--CHHHHHHHHHhCCCCCCCCCCCchHHHHHHhc--CCHHHHHHHHcccccchhhhhhccCCC
Q 008977          160 SANRNNETPLYMAAANG--SVEIVAKILQKCPSPAHEGPDGKTALHAAVYT--YPTEVIKQLFLHEEKRSLTAVRDKYGW  235 (547)
Q Consensus       160 ~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~--~~~~~v~~Ll~~~~~~~~~~~~d~~g~  235 (547)
                      ..|..|.||||+|+..+  +.+++++|+++|++++..+..|.||||+++..  ++.++++.|+.++   ..++.+|..|+
T Consensus       147 ~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g---~~~~~~d~~g~  223 (471)
T PHA03095        147 ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAG---CDPAATDMLGN  223 (471)
T ss_pred             ccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcC---CCCcccCCCCC
Confidence            78899999999998876  68999999999999998899999999999875  6788999999544   45677899999


Q ss_pred             cHHhHHHhcCCh--HHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHh
Q 008977          236 TPLHHAAYSGRE--LTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVS  313 (547)
Q Consensus       236 tpLh~A~~~g~~--~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  313 (547)
                      ||||+|+..|+.  .+++.|++.|.+++..+  ..|.||||+|+..|+.+++++|++.|++. +.+|.+|+||||+|+..
T Consensus       224 tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d--~~g~TpLh~A~~~~~~~~v~~LL~~gad~-n~~~~~g~tpl~~A~~~  300 (471)
T PHA03095        224 TPLHSMATGSSCKRSLVLPLLIAGISINARN--RYGQTPLHYAAVFNNPRACRRLIALGADI-NAVSSDGNTPLSLMVRN  300 (471)
T ss_pred             CHHHHHHhcCCchHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHh
Confidence            999999999875  68889999998877655  46999999999999999999999999886 56699999999999999


Q ss_pred             cCcccccceeeeccccccccccccc
Q 008977          314 LDLLQSSGLVIKHPTVRNSRLLIAE  338 (547)
Q Consensus       314 ~~~~~~~~~~~~~~l~~~~~~~~~~  338 (547)
                      ++.+.      ...++..+.+++..
T Consensus       301 ~~~~~------v~~LL~~~~~~~~~  319 (471)
T PHA03095        301 NNGRA------VRAALAKNPSAETV  319 (471)
T ss_pred             CCHHH------HHHHHHhCCCHHHH
Confidence            98642      23444555554443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=317.81  Aligned_cols=271  Identities=21%  Similarity=0.168  Sum_probs=236.9

Q ss_pred             eEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcC---CHHHHHHHHHHhhcCCchhhhhhhhHHHHH
Q 008977           47 LTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKG---DAAIVKFLIKFAKKQPRDLQRGVKSAERQM  123 (547)
Q Consensus        47 ~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  123 (547)
                      .++..  ++.++  +++|++    .+.+++..+..|.||||+|+..|   +.+++++|++.|++                
T Consensus        20 ~~~~~--~~~~~--v~~Ll~----~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad----------------   75 (471)
T PHA03095         20 LNASN--VTVEE--VRRLLA----AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD----------------   75 (471)
T ss_pred             HcCCC--CCHHH--HHHHHH----cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC----------------
Confidence            45555  78888  898866    67889999999999999999999   99999999999987                


Q ss_pred             hcccccCCCCHhHHHHHcC-CHHHHHHHHhhCCCCCCCCCCCCCcHHHHHH--HCCCHHHHHHHHHhCCCCCCCCCCCch
Q 008977          124 LGMTNEEQNTPLHEAVRLR-SVDVAKILIVADPHVPYSANRNNETPLYMAA--ANGSVEIVAKILQKCPSPAHEGPDGKT  200 (547)
Q Consensus       124 l~~~~~~g~t~Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~iv~~Ll~~~~~~~~~~~~g~t  200 (547)
                      ++.++..|.||||+|+..| +.+++++|+++|++++ ..+..|.||||+|+  ..++.+++++|+++|++++..+..|.|
T Consensus        76 in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~t  154 (471)
T PHA03095         76 VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMT  154 (471)
T ss_pred             CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence            6778889999999999999 5999999999999987 78899999999999  567899999999999999999999999


Q ss_pred             HHHHHHhcC--CHHHHHHHHcccccchhhhhhccCCCcHHhHHHhc--CChHHHHHHhccCCCcceecCCCCCchHHHHH
Q 008977          201 ALHAAVYTY--PTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYS--GRELTSKLLLDHDKSAAFIGGKDRNMTALHLA  276 (547)
Q Consensus       201 ~Lh~A~~~~--~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A  276 (547)
                      |||+|+..+  +.++++.|++.+.   ..+..|..|+||||+++..  ++.++++.|++.|.+++..+  ..|.||||+|
T Consensus       155 pL~~a~~~~~~~~~iv~~Ll~~g~---~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d--~~g~tpLh~A  229 (471)
T PHA03095        155 PLAVLLKSRNANVELLRLLIDAGA---DVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATD--MLGNTPLHSM  229 (471)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHcCC---CCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccC--CCCCCHHHHH
Confidence            999999866  6799999995443   3444589999999999975  77899999999999887654  4699999999


Q ss_pred             HHcCCH--HHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhc
Q 008977          277 AASGHI--MVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR  354 (547)
Q Consensus       277 ~~~g~~--~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~  354 (547)
                      +..|+.  .+++.|++.+.+. +.+|..|+||||+|+..++.+      +...+++.|++++.+|.+|+||||+|+..+.
T Consensus       230 a~~~~~~~~~v~~ll~~g~di-n~~d~~g~TpLh~A~~~~~~~------~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~  302 (471)
T PHA03095        230 ATGSSCKRSLVLPLLIAGISI-NARNRYGQTPLHYAAVFNNPR------ACRRLIALGADINAVSSDGNTPLSLMVRNNN  302 (471)
T ss_pred             HhcCCchHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHH------HHHHHHHcCCCCcccCCCCCCHHHHHHHhCC
Confidence            999975  6888899998876 566899999999999998863      3356678899999999999999999998744

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-36  Score=316.63  Aligned_cols=284  Identities=20%  Similarity=0.160  Sum_probs=236.3

Q ss_pred             CCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHH---
Q 008977           12 GDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHL---   88 (547)
Q Consensus        12 g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~---   88 (547)
                      ...+.++++++.+-..+..+..+.|||       |+|+..  |+.++  +++|++    .+..++..+..|.||||+   
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~t~L-------~~A~~~--~~~~i--vk~Ll~----~g~~~~~~~~~~~t~L~~~~~   77 (480)
T PHA03100         13 IKVKNIKYIIMEDDLNDYSYKKPVLPL-------YLAKEA--RNIDV--VKILLD----NGADINSSTKNNSTPLHYLSN   77 (480)
T ss_pred             HHHHHHHHHHhcCccchhhhcccchhh-------hhhhcc--CCHHH--HHHHHH----cCCCCCCccccCcCHHHHHHH
Confidence            344667777777655556666777777       999999  99999  999976    577788888889999999   


Q ss_pred             --HHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHH--HcCCHHHHHHHHhhCCCCCCCCCCC
Q 008977           89 --AAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAV--RLRSVDVAKILIVADPHVPYSANRN  164 (547)
Q Consensus        89 --Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~  164 (547)
                        |+..|+.+++++|+++|++                ++..+..|.||||+|+  ..|+.+++++|+++|++++ ..+..
T Consensus        78 ~~a~~~~~~~iv~~Ll~~ga~----------------i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~  140 (480)
T PHA03100         78 IKYNLTDVKEIVKLLLEYGAN----------------VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSD  140 (480)
T ss_pred             HHHHhhchHHHHHHHHHCCCC----------------CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCC
Confidence              9999999999999998876                4567888999999999  9999999999999998876 67888


Q ss_pred             CCcHHHHHHHCC--CHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCC------Cc
Q 008977          165 NETPLYMAAANG--SVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYG------WT  236 (547)
Q Consensus       165 g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g------~t  236 (547)
                      |.||||+|+..|  +.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++.   ..+..+..|      .|
T Consensus       141 g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga---~~~~~~~~~~~~~~~~t  217 (480)
T PHA03100        141 GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGA---DINAGDIETLLFTIFET  217 (480)
T ss_pred             CCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCC---CccCCCCCCCcHHHHHh
Confidence            999999999999  8999999999999999888899999999999999999999995443   345566777      89


Q ss_pred             HHhHHHhcCC--hHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhc
Q 008977          237 PLHHAAYSGR--ELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSL  314 (547)
Q Consensus       237 pLh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  314 (547)
                      |||.|+..|+  .+++++|+++|.+.+..+  ..|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|++.+
T Consensus       218 ~l~~a~~~~~~~~~iv~~Ll~~g~din~~d--~~g~TpL~~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpl~~A~~~~  294 (480)
T PHA03100        218 PLHIAACYNEITLEVVNYLLSYGVPINIKD--VYGFTPLHYAVYNNNPEFVKYLLDLGANP-NLVNKYGDTPLHIAILNN  294 (480)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHcCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHhC
Confidence            9999999999  999999999988776554  46999999999999999999999999865 566899999999999888


Q ss_pred             Ccccccceeeecccccccccccccc
Q 008977          315 DLLQSSGLVIKHPTVRNSRLLIAED  339 (547)
Q Consensus       315 ~~~~~~~~~~~~~l~~~~~~~~~~d  339 (547)
                      +.+      +...+++.|++++..+
T Consensus       295 ~~~------iv~~Ll~~g~~i~~i~  313 (480)
T PHA03100        295 NKE------IFKLLLNNGPSIKTII  313 (480)
T ss_pred             CHH------HHHHHHhcCCCHHHHH
Confidence            753      3345666677666544

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-36  Score=315.38  Aligned_cols=257  Identities=22%  Similarity=0.293  Sum_probs=237.1

Q ss_pred             HHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCcccee-----EeeecCCceecchhhHHHHHhhcCCccccc
Q 008977            3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHL-----TLQTEEGEIVSVSTKFVEHILDLSPSVLFQ   77 (547)
Q Consensus         3 ~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~-----A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~   77 (547)
                      ++||.|+..|+.++++.|+++|++++..+..+.|+|       |+     |+..  ++.++  +++|++    .+..++.
T Consensus        37 t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L-------~~~~~~~a~~~--~~~~i--v~~Ll~----~ga~i~~  101 (480)
T PHA03100         37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPL-------HYLSNIKYNLT--DVKEI--VKLLLE----YGANVNA  101 (480)
T ss_pred             hhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHH-------HHHHHHHHHhh--chHHH--HHHHHH----CCCCCCC
Confidence            689999999999999999999999998888888888       99     9999  99999  999976    5677789


Q ss_pred             cccCCChHHHHHH--HcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcC--CHHHHHHHHhh
Q 008977           78 ADAKGDSPLHLAA--KKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLR--SVDVAKILIVA  153 (547)
Q Consensus        78 ~~~~g~t~Lh~Aa--~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~  153 (547)
                      .|..|.||||+|+  ..|+.+++++|+++|++                ++.++..|.||||+|+..|  +.+++++|+++
T Consensus       102 ~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~  165 (480)
T PHA03100        102 PDNNGITPLLYAISKKSNSYSIVEYLLDNGAN----------------VNIKNSDGENLLHLYLESNKIDLKILKLLIDK  165 (480)
T ss_pred             CCCCCCchhhHHHhcccChHHHHHHHHHcCCC----------------CCccCCCCCcHHHHHHHcCCChHHHHHHHHHC
Confidence            9999999999999  99999999999999876                5667899999999999999  99999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCC------chHHHHHHhcCC--HHHHHHHHcccccch
Q 008977          154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG------KTALHAAVYTYP--TEVIKQLFLHEEKRS  225 (547)
Q Consensus       154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g------~t~Lh~A~~~~~--~~~v~~Ll~~~~~~~  225 (547)
                      |++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|      .||||.|+..++  .++++.|+.+   +.
T Consensus       166 g~din-~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~---g~  241 (480)
T PHA03100        166 GVDIN-AKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY---GV  241 (480)
T ss_pred             CCCcc-cccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc---CC
Confidence            99987 677799999999999999999999999999999988888      899999999999  9999999944   34


Q ss_pred             hhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCcc
Q 008977          226 LTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCC  296 (547)
Q Consensus       226 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  296 (547)
                      ..+.+|..|.||||+|+..|+.+++++|+++|++++..+  ..|.||+|+|+..++.+++++|++++++..
T Consensus       242 din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d--~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        242 PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN--KYGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC--CCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            567789999999999999999999999999999877654  469999999999999999999999998753

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.8e-36  Score=306.93  Aligned_cols=263  Identities=20%  Similarity=0.211  Sum_probs=197.1

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK   81 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~   81 (547)
                      .++|+.|++.|+.+++++|++.|++++..+..|.|||       |.|+..  |+.++  +++|++    .+....     
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L-------~~A~~~--~~~~i--v~~Ll~----~g~~~~-----   95 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPL-------LTAIKI--GAHDI--IKLLID----NGVDTS-----   95 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-------HHHHHc--CCHHH--HHHHHH----CCCCCC-----
Confidence            3789999999999999999999999998888888888       999999  99999  999976    222211     


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA  161 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  161 (547)
                           ..+....+.++++.|++.+.+                ++.++..|.||||+|+..|+.+++++|++.|++++ .+
T Consensus        96 -----~~~~~~~~~~~i~~ll~~g~d----------------~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n-~~  153 (434)
T PHA02874         96 -----ILPIPCIEKDMIKTILDCGID----------------VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IE  153 (434)
T ss_pred             -----cchhccCCHHHHHHHHHCcCC----------------CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC-Cc
Confidence                 123344567778888877665                45567778888888888888888888888777776 56


Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHH
Q 008977          162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA  241 (547)
Q Consensus       162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A  241 (547)
                      |..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+   ...+.++..|.||||.|
T Consensus       154 d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g---~~i~~~~~~g~TpL~~A  230 (434)
T PHA02874        154 DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHG---NHIMNKCKNGFTPLHNA  230 (434)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC---CCCcCCCCCCCCHHHHH
Confidence            777888888888888888888888888877777777888888888888888888887433   33455677788888888


Q ss_pred             HhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcC-CHHHHHHHhhcCCCccccccCCCCcHHHHHHHhc
Q 008977          242 AYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASG-HIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSL  314 (547)
Q Consensus       242 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  314 (547)
                      +..+. +.+++|+ .+.+.+.  .+..|.||||+|+..+ +.+++++|++.+++. +.+|..|+||||+|++.+
T Consensus       231 ~~~~~-~~i~~Ll-~~~~in~--~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~-n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        231 IIHNR-SAIELLI-NNASIND--QDIDGSTPLHHAINPPCDIDIIDILLYHKADI-SIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHCCh-HHHHHHH-cCCCCCC--cCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHhC
Confidence            77654 4455555 3444433  3345788888888765 678888888877775 445777888888887765

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.7e-36  Score=311.54  Aligned_cols=304  Identities=17%  Similarity=0.134  Sum_probs=239.7

Q ss_pred             HHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCC
Q 008977            4 KLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGD   83 (547)
Q Consensus         4 ~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~   83 (547)
                      .|+.++..++.+.+...++. .+.......+...  .+.||||+|+..  |+.++  +++|++    .+.+++.+|.+|.
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~-~~~~~~~~~~~~~--~~~tPLh~A~~~--g~~e~--vk~Ll~----~gadvn~~d~~g~   71 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEY-IDHTENYSTSASL--IPFIPLHQAVEA--RNLDV--VKSLLT----RGHNVNQPDHRDL   71 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHH-HhhhhhhcCcccc--cCcchHHHHHHc--CCHHH--HHHHHH----CCCCCCCCCCCCC
Confidence            57889999998777766665 1111101111111  134666999999  99999  999976    5788899999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR  163 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  163 (547)
                      ||||+||..|+.++++.|++.+...                  ....+.+|++.|+..++.++++.|+..+.+.....+ 
T Consensus        72 TpLh~A~~~g~~~~v~~Ll~~~~~~------------------~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~-  132 (477)
T PHA02878         72 TPLHIICKEPNKLGMKEMIRSINKC------------------SVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID-  132 (477)
T ss_pred             CHHHHHHHCccHhHHHHHHHHHhcc------------------ccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc-
Confidence            9999999999999999999976542                  124578999999999999999999987543221111 


Q ss_pred             CCCcHHHHHHHC--CCHHHHHHHHHhCCCCCCCCCC-CchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhH
Q 008977          164 NNETPLYMAAAN--GSVEIVAKILQKCPSPAHEGPD-GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHH  240 (547)
Q Consensus       164 ~g~tpL~~A~~~--g~~~iv~~Ll~~~~~~~~~~~~-g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~  240 (547)
                        ...+......  ...+++++|+++|++++..+.. |.||||+|+..|+.++++.|+..+   ..++.+|..|.||||.
T Consensus       133 --~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g---ad~n~~d~~g~tpLh~  207 (477)
T PHA02878        133 --LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYG---ANVNIPDKTNNSPLHH  207 (477)
T ss_pred             --HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCC---CCCCCcCCCCCCHHHH
Confidence              1111111112  2356999999999999999988 999999999999999999999544   4467789999999999


Q ss_pred             HHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHc-CCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccc
Q 008977          241 AAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAAS-GHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQS  319 (547)
Q Consensus       241 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~  319 (547)
                      |+..|+.++++.|++.|++.+..+  ..|.||||+|+.. ++.+++++|++++++.....+..|+||||+|+.  +.   
T Consensus       208 A~~~~~~~iv~~Ll~~ga~in~~d--~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~~--~~---  280 (477)
T PHA02878        208 AVKHYNKPIVHILLENGASTDARD--KCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIK--SE---  280 (477)
T ss_pred             HHHhCCHHHHHHHHHcCCCCCCCC--CCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHcc--CH---
Confidence            999999999999999999887654  4699999999975 799999999999998765544589999999943  32   


Q ss_pred             cceeeecccccccccccccccCCCchhHHHHHh
Q 008977          320 SGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       320 ~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                         .+...+++.|+++|.+|.+|+||||+|++.
T Consensus       281 ---~~v~~Ll~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        281 ---RKLKLLLEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             ---HHHHHHHHCCCCCCCcCCCCCCHHHHHHHH
Confidence               234567788999999999999999999974

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-35  Score=312.77  Aligned_cols=227  Identities=15%  Similarity=0.110  Sum_probs=165.6

Q ss_pred             CHHHHHHHHc---CCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhh-cCCccccc
Q 008977            2 DRKLFEAAAK---GDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILD-LSPSVLFQ   77 (547)
Q Consensus         2 ~~~L~~A~~~---g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~-~~~~~~~~   77 (547)
                      .++||.|+..   |+.++++.|++.|++++..+..|.|||       |+|+..  |+.++  ++.+.+.+- ..+. .+.
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL-------~~Aa~~--g~~~v--~~~~~~~Ll~~~~~-~n~  100 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPL-------EEYTNS--RHVKV--NKDIAMALLEATGY-SNI  100 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHH-------HHHHHc--CChhH--HHHHHHHHHhccCC-CCC
Confidence            3689987555   889999999999999998888899999       999999  88666  544433332 2221 222


Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHH--HcCCHHHHHHHHhhCC
Q 008977           78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAV--RLRSVDVAKILIVADP  155 (547)
Q Consensus        78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~  155 (547)
                      .+  ..+++|+|+..|+.++|++|+++|++                ++.+|..|.||||.|+  ..|+.+++++|+++|+
T Consensus       101 ~~--~~~~~~~a~~~~~~e~vk~Ll~~Gad----------------in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga  162 (661)
T PHA02917        101 ND--FNIFSYMKSKNVDVDLIKVLVEHGFD----------------LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGC  162 (661)
T ss_pred             CC--cchHHHHHhhcCCHHHHHHHHHcCCC----------------CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCC
Confidence            22  23677888889999999999999887                6677899999999654  5789999999999999


Q ss_pred             CCCCC--CCCCC-----------CcHHHHHHH-----------CCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCH
Q 008977          156 HVPYS--ANRNN-----------ETPLYMAAA-----------NGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT  211 (547)
Q Consensus       156 ~~~~~--~~~~g-----------~tpL~~A~~-----------~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~  211 (547)
                      +++..  .+..|           .||||+|+.           .++.+++++|+++|++++.+|.+|.||||+|+.+|+.
T Consensus       163 ~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        163 SVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             CccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCC
Confidence            88632  12223           599999986           4688999999999999999999999999999999885


Q ss_pred             --HHHHHHHcccccc-hhhhhhccCCCcHHhHHHhc-------C--ChHHHHHHhccCCC
Q 008977          212 --EVIKQLFLHEEKR-SLTAVRDKYGWTPLHHAAYS-------G--RELTSKLLLDHDKS  259 (547)
Q Consensus       212 --~~v~~Ll~~~~~~-~~~~~~d~~g~tpLh~A~~~-------g--~~~~v~~Ll~~~~~  259 (547)
                        ++++.|+. +... ......|..|.+|+|+|+..       +  +.++++.|++.|++
T Consensus       243 ~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        243 DIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             cHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence              79998873 2111 11123445566666666631       1  44556666665543

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-35  Score=306.72  Aligned_cols=270  Identities=17%  Similarity=0.149  Sum_probs=224.9

Q ss_pred             HHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCC
Q 008977            3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKG   82 (547)
Q Consensus         3 ~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g   82 (547)
                      +|||.|++.|+.++++.|+++|++++..+.+|.|||       |+|+..  |+.+.  +++|++.....      ....+
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpL-------h~A~~~--g~~~~--v~~Ll~~~~~~------~~~~~  101 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPL-------HIICKE--PNKLG--MKEMIRSINKC------SVFYT  101 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-------HHHHHC--ccHhH--HHHHHHHHhcc------ccccc
Confidence            579999999999999999999999999999999999       999999  99999  99997742211      11467


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHc--CCHHHHHHHHhhCCCCCCC
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL--RSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~--g~~~iv~~Ll~~~~~~~~~  160 (547)
                      .+|+|.|+..|+.++++.|+..+.+.....                  ....+......  .+.+++++|+++|++++ .
T Consensus       102 ~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~iv~~Ll~~gadin-~  162 (477)
T PHA02878        102 LVAIKDAFNNRNVEIFKIILTNRYKNIQTI------------------DLVYIDKKSKDDIIEAEITKLLLSYGADIN-M  162 (477)
T ss_pred             hhhHHHHHHcCCHHHHHHHHhCcccCcccC------------------cHHHHhhccchhhHHHHHHHHHHHcCCCCC-c
Confidence            899999999999999999998754321100                  00011111111  23469999999999988 5


Q ss_pred             CCCC-CCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHh
Q 008977          161 ANRN-NETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH  239 (547)
Q Consensus       161 ~~~~-g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh  239 (547)
                      .+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.++++.|+..   +...+.+|..|+||||
T Consensus       163 ~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~---ga~in~~d~~g~TpLh  239 (477)
T PHA02878        163 KDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN---GASTDARDKCGNTPLH  239 (477)
T ss_pred             cCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc---CCCCCCCCCCCCCHHH
Confidence            5666 99999999999999999999999999999999999999999999999999999944   4456778999999999


Q ss_pred             HHHhc-CChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcC
Q 008977          240 HAAYS-GRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLD  315 (547)
Q Consensus       240 ~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  315 (547)
                      +|+.. ++.+++++|+++|++++..... .|.||||+|  .++.+++++|++.+++. +..|.+|+||||+|+..+.
T Consensus       240 ~A~~~~~~~~iv~~Ll~~gadvn~~~~~-~g~TpLh~A--~~~~~~v~~Ll~~gadi-n~~d~~g~TpL~~A~~~~~  312 (477)
T PHA02878        240 ISVGYCKDYDILKLLLEHGVDVNAKSYI-LGLTALHSS--IKSERKLKLLLEYGADI-NSLNSYKLTPLSSAVKQYL  312 (477)
T ss_pred             HHHHhcCCHHHHHHHHHcCCCCCccCCC-CCCCHHHHH--ccCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHHcC
Confidence            99976 6899999999999988765432 699999999  57889999999999987 5569999999999998653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=7.4e-35  Score=305.40  Aligned_cols=324  Identities=16%  Similarity=0.057  Sum_probs=214.5

Q ss_pred             HHHHHHHH--cCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCce--ecchhhHHHHHhhcCCcccccc
Q 008977            3 RKLFEAAA--KGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEI--VSVSTKFVEHILDLSPSVLFQA   78 (547)
Q Consensus         3 ~~L~~A~~--~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~--~~~~~~~L~~~~~~~~~~~~~~   78 (547)
                      ++||.|+.  .++.+++++|+++|++++..+.+|.|||       |+|+..  |+.  ++  +++|++    .+++++.+
T Consensus       179 TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPL-------H~Aa~~--g~~~~eI--VklLLe----~GADVN~k  243 (764)
T PHA02716        179 GILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPL-------HTYLIT--GNVCASV--IKKIIE----LGGDMDMK  243 (764)
T ss_pred             cHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHH-------HHHHHc--CCCCHHH--HHHHHH----cCCCCCCC
Confidence            68998764  4688999999999999999999999999       999999  854  77  899976    68899999


Q ss_pred             ccCCChHHHHHH---HcCCHHHHHHHHHHhhcCCch-----hh-------hhhhhHH------HHHhcccccCCCCHhHH
Q 008977           79 DAKGDSPLHLAA---KKGDAAIVKFLIKFAKKQPRD-----LQ-------RGVKSAE------RQMLGMTNEEQNTPLHE  137 (547)
Q Consensus        79 ~~~g~t~Lh~Aa---~~g~~~~v~~Ll~~~~~~~~~-----~~-------~~~~~~~------~~~l~~~~~~g~t~Lh~  137 (547)
                      |..|.||||+|+   ..++.++++.|++.+......     +.       .+.....      ...++.+|..|+||||+
T Consensus       244 D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~  323 (764)
T PHA02716        244 CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQ  323 (764)
T ss_pred             CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHH
Confidence            999999999875   356667777766543221000     00       0000000      01145667778888887


Q ss_pred             HHH--cCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHH--------------CCCHHHHHHHHHhCCCCCCCCCCCchH
Q 008977          138 AVR--LRSVDVAKILIVADPHVPYSANRNNETPLYMAAA--------------NGSVEIVAKILQKCPSPAHEGPDGKTA  201 (547)
Q Consensus       138 A~~--~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~--------------~g~~~iv~~Ll~~~~~~~~~~~~g~t~  201 (547)
                      |+.  .++.+++++|+++|++++ .+|..|.||||+|+.              .++.+++++|+++|++++.++..|.||
T Consensus       324 Aaa~~~~~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TP  402 (764)
T PHA02716        324 YILRHNISTDIIKLLHEYGNDLN-EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTP  402 (764)
T ss_pred             HHHHhCCCchHHHHHHHcCCCCc-cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCCh
Confidence            653  456778888888887775 667778888887764              256788888888888888888888888


Q ss_pred             HHH----HHhcCCHHHHHHHHcccccchh-----hhhhccCCCcH--HhHHHhcCChHHH------------------HH
Q 008977          202 LHA----AVYTYPTEVIKQLFLHEEKRSL-----TAVRDKYGWTP--LHHAAYSGRELTS------------------KL  252 (547)
Q Consensus       202 Lh~----A~~~~~~~~v~~Ll~~~~~~~~-----~~~~d~~g~tp--Lh~A~~~g~~~~v------------------~~  252 (547)
                      ||.    |...++.++++.|+..+.....     ....+..+.+|  +|.++..++.+..                  ..
T Consensus       403 Lh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~  482 (764)
T PHA02716        403 LTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHC  482 (764)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHH
Confidence            873    2234567777777743211000     00011222333  4444444332221                  22


Q ss_pred             HhccCCCcceecCCCCCchHHHHHHHcCCH-----HHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecc
Q 008977          253 LLDHDKSAAFIGGKDRNMTALHLAAASGHI-----MVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHP  327 (547)
Q Consensus       253 Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~-----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~  327 (547)
                      ++..+.+.+.  .+..|+||||+|+..|+.     |++++|++.|++. +.+|.+|+||||+|+++++.+.. ...+...
T Consensus       483 ~ii~~~nvN~--~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADI-N~~d~~G~TPLh~A~~~g~~~~~-~~eIvk~  558 (764)
T PHA02716        483 AIIERYNNAV--CETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNI-NIPTKNGVTPLMLTMRNNRLSGH-QWYIVKN  558 (764)
T ss_pred             HHHhhccccc--cCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCC-cccCCCCCCHHHHHHHcCCcccc-HHHHHHH
Confidence            2222222222  345799999999999886     5569999999886 56799999999999999874111 1134556


Q ss_pred             cccccccccccccCCCchhHHHHHh
Q 008977          328 TVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       328 l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                      +++.+++++...      |++|...
T Consensus       559 LL~~ga~~~~~~------l~~~~~~  577 (764)
T PHA02716        559 ILDKRPNVDIVI------IFLDKCY  577 (764)
T ss_pred             HHhcCCCcchHH------HHHHhhh
Confidence            667788787773      6776643

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-34  Score=296.19  Aligned_cols=326  Identities=13%  Similarity=0.037  Sum_probs=243.7

Q ss_pred             CHHHHHHHHcC---CchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccc
Q 008977            2 DRKLFEAAAKG---DIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQA   78 (547)
Q Consensus         2 ~~~L~~A~~~g---~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~   78 (547)
                      .++||.|+.+|   +.++++.|+++|++++.+|..|+|||       |+|+....++.++  +++|++.  -.++..+..
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPL-------h~Aa~~~~~~~eI--v~~Ll~~--~~~~~~~~~  110 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPL-------GVYSKRKYVKSQI--VHLLISS--YSNASNELT  110 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChH-------HHHHHcCCCcHHH--HHHHHhc--CCCCCcccc
Confidence            37899999997   48999999999999999998999999       9999872237888  9999661  113344556


Q ss_pred             ccCCChHHHHHHH--cCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhccc-ccCCCCHhHHHHHcCCHHHHHHHHhhCC
Q 008977           79 DAKGDSPLHLAAK--KGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMT-NEEQNTPLHEAVRLRSVDVAKILIVADP  155 (547)
Q Consensus        79 ~~~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~  155 (547)
                      +..+++|||.++.  +++.++|++|++.+...+..           ..+.. +..|.+|++++...++.+++++|++.|+
T Consensus       111 ~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~-----------~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~  179 (672)
T PHA02730        111 SNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSK-----------NTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSEC  179 (672)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhh-----------hhhhhccccchhhhhHhcCCCchHHHHHHHHcCC
Confidence            7778999999988  88999999999744321110           01111 2378999999999999999999999999


Q ss_pred             CCC-C-----CCCCCCC-cHHHHH------HHCCCHHHHHHHHHhCCCCCCCCCCCchHHHH--HHhcCCHHHHHHHHc-
Q 008977          156 HVP-Y-----SANRNNE-TPLYMA------AANGSVEIVAKILQKCPSPAHEGPDGKTALHA--AVYTYPTEVIKQLFL-  219 (547)
Q Consensus       156 ~~~-~-----~~~~~g~-tpL~~A------~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~--A~~~~~~~~v~~Ll~-  219 (547)
                      ++. .     ..+..++ |.||++      ..+++.|++++|+++|++++.+|..|+||||+  +...++.|+++.|++ 
T Consensus       180 ~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~  259 (672)
T PHA02730        180 YSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKD  259 (672)
T ss_pred             cccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhc
Confidence            984 1     1333444 445533      45678999999999999999999999999996  445567999999996 


Q ss_pred             -------------------------------ccccchhh--------------h---hhccCCCc---------------
Q 008977          220 -------------------------------HEEKRSLT--------------A---VRDKYGWT---------------  236 (547)
Q Consensus       220 -------------------------------~~~~~~~~--------------~---~~d~~g~t---------------  236 (547)
                                                     ++.+-..+              .   ..+..|.+               
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~  339 (672)
T PHA02730        260 VDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQD  339 (672)
T ss_pred             cccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccc
Confidence                                           11111110              0   14555544               


Q ss_pred             ------HHhHHHhcC---ChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCC----HHHHHHHhhcCCC-ccccccCC
Q 008977          237 ------PLHHAAYSG---RELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH----IMVVDRILSSCDG-CCAKVDER  302 (547)
Q Consensus       237 ------pLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~-~~~~~d~~  302 (547)
                            .||.-...+   +.+++++|+++|++++..   ..|.||||+|+..++    .|+++.|+++|++ ..+..|.+
T Consensus       340 ~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k---~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~  416 (672)
T PHA02730        340 ESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT---TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNN  416 (672)
T ss_pred             hhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC---CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccC
Confidence                  567666655   589999999999998853   479999999998875    8999999999874 45677999


Q ss_pred             CCcHHHH---HHHhcCc---ccccceeeecccccccccccccccCCCchhHHHHHh
Q 008977          303 GWNFLHF---AMVSLDL---LQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       303 g~t~Lh~---A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                      |+||||.   |...+..   .....+.+...++..|+++|++|..|+||||+|+..
T Consensus       417 G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~  472 (672)
T PHA02730        417 GRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDV  472 (672)
T ss_pred             CCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHh
Confidence            9999994   3322210   000011235678889999999999999999999986

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-34  Score=296.33  Aligned_cols=245  Identities=21%  Similarity=0.233  Sum_probs=213.2

Q ss_pred             CCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHH
Q 008977           41 NITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE  120 (547)
Q Consensus        41 ~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  120 (547)
                      ++++||.|+..  |+.++  +++|++    .+.+++..+.+|.||||+|+..|+.++|++|+++|++             
T Consensus         2 ~~~~L~~A~~~--g~~~i--v~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-------------   60 (413)
T PHA02875          2 DQVALCDAILF--GELDI--ARRLLD----IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-------------   60 (413)
T ss_pred             CchHHHHHHHh--CCHHH--HHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-------------
Confidence            34566999999  99999  999976    5777888888999999999999999999999999876             


Q ss_pred             HHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCch
Q 008977          121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKT  200 (547)
Q Consensus       121 ~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t  200 (547)
                         ++..+..+.||||.|+..|+.+++++|++.|+......+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus        61 ---~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~t  137 (413)
T PHA02875         61 ---PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFS  137 (413)
T ss_pred             ---ccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCC
Confidence               34456788999999999999999999999998877667788999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcC
Q 008977          201 ALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASG  280 (547)
Q Consensus       201 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g  280 (547)
                      |||+|+..|+.++++.|+.++   ...+.+|..|.||||+|+..|+.+++++|+++|++++....+ .+.||+|+|+..|
T Consensus       138 pLh~A~~~~~~~~v~~Ll~~g---~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~-~~~t~l~~A~~~~  213 (413)
T PHA02875        138 PLHLAVMMGDIKGIELLIDHK---ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN-GCVAALCYAIENN  213 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHhcC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC-CCchHHHHHHHcC
Confidence            999999999999999999443   446678999999999999999999999999999988776544 3568999999999


Q ss_pred             CHHHHHHHhhcCCCccc--cccCCCCcHHHHHHHh
Q 008977          281 HIMVVDRILSSCDGCCA--KVDERGWNFLHFAMVS  313 (547)
Q Consensus       281 ~~~~v~~Ll~~~~~~~~--~~d~~g~t~Lh~A~~~  313 (547)
                      +.+++++|+++|++...  ..+.+|.||++++...
T Consensus       214 ~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        214 KIDIVRLFIKRGADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             CHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhh
Confidence            99999999999988643  2367788999887643

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-34  Score=299.24  Aligned_cols=271  Identities=15%  Similarity=0.126  Sum_probs=227.8

Q ss_pred             HHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHH
Q 008977            9 AAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHL   88 (547)
Q Consensus         9 ~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~   88 (547)
                      ....+.++++.|+++|++++.. .+|.|+|       |.++...+++.++  +++|++    .|++++.++ .+.||||.
T Consensus        11 ~~~~~~~~v~~LL~~GadvN~~-~~g~t~l-------~~~~~~~~~~~~i--v~~Ll~----~GAdvn~~~-~~~tpL~~   75 (494)
T PHA02989         11 SDTVDKNALEFLLRTGFDVNEE-YRGNSIL-------LLYLKRKDVKIKI--VKLLID----NGADVNYKG-YIETPLCA   75 (494)
T ss_pred             CCcCcHHHHHHHHHcCCCcccc-cCCCCHH-------HHHHhcCCCChHH--HHHHHH----cCCCccCCC-CCCCcHHH
Confidence            3468999999999999999988 4788888       7766553357889  999977    688888776 57999999


Q ss_pred             HHHcC------CHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHc---CCHHHHHHHHhhCCCCCC
Q 008977           89 AAKKG------DAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL---RSVDVAKILIVADPHVPY  159 (547)
Q Consensus        89 Aa~~g------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~  159 (547)
                      |+.++      +.++|++|+++|++                ++.++..|.||||.|+..   |+.+++++|+++|++++.
T Consensus        76 a~~~~~~~~~~~~~iv~~Ll~~Gad----------------in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~  139 (494)
T PHA02989         76 VLRNREITSNKIKKIVKLLLKFGAD----------------INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVND  139 (494)
T ss_pred             HHhccCcchhhHHHHHHHHHHCCCC----------------CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCccc
Confidence            98754      57899999999987                677899999999988765   689999999999999955


Q ss_pred             CCCCCCCcHHHHHHHC--CCHHHHHHHHHhCCCCCC-CCCCCchHHHHHHhcC----CHHHHHHHHcccccchhhhhhcc
Q 008977          160 SANRNNETPLYMAAAN--GSVEIVAKILQKCPSPAH-EGPDGKTALHAAVYTY----PTEVIKQLFLHEEKRSLTAVRDK  232 (547)
Q Consensus       160 ~~~~~g~tpL~~A~~~--g~~~iv~~Ll~~~~~~~~-~~~~g~t~Lh~A~~~~----~~~~v~~Ll~~~~~~~~~~~~d~  232 (547)
                      ..|..|.||||+|+..  ++.+++++|+++|++++. .+..|.||||.|++.+    +.+++++|++.+   ..++.+|.
T Consensus       140 ~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~G---a~vn~~~~  216 (494)
T PHA02989        140 VKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKG---VNIETNNN  216 (494)
T ss_pred             ccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCC---CCccccCC
Confidence            7899999999998764  689999999999999988 6789999999998764    899999999444   44667788


Q ss_pred             CCCcHHhHHHhcC------ChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcH
Q 008977          233 YGWTPLHHAAYSG------RELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNF  306 (547)
Q Consensus       233 ~g~tpLh~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  306 (547)
                      .+.||||.++..+      ..+++++|+. +++.+..  +..|.||||+|+..|+.+++++|++.|++. +.+|..|+||
T Consensus       217 ~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~--d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi-n~~d~~G~Tp  292 (494)
T PHA02989        217 GSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKK--DKKGFNPLLISAKVDNYEAFNYLLKLGDDI-YNVSKDGDTV  292 (494)
T ss_pred             ccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCC--CCCCCCHHHHHHHhcCHHHHHHHHHcCCCc-cccCCCCCCH
Confidence            8999999877643      4677887665 5655544  456999999999999999999999999986 5569999999


Q ss_pred             HHHHHHhcCcc
Q 008977          307 LHFAMVSLDLL  317 (547)
Q Consensus       307 Lh~A~~~~~~~  317 (547)
                      ||+|++.++.+
T Consensus       293 L~~A~~~~~~~  303 (494)
T PHA02989        293 LTYAIKHGNID  303 (494)
T ss_pred             HHHHHHcCCHH
Confidence            99999999864

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-33  Score=268.08  Aligned_cols=221  Identities=21%  Similarity=0.227  Sum_probs=178.0

Q ss_pred             CceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCC
Q 008977           54 GEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNT  133 (547)
Q Consensus        54 g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t  133 (547)
                      ++.+.  +++|++    .+.  +..|.+|+||||+|+..|+.+++++|++++++.                +.  .+|.|
T Consensus        10 ~~~~~--~~~Lis----~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~----------------n~--~d~~T   63 (284)
T PHA02791         10 KSKQL--KSFLSS----KDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALK----------------NL--LENEF   63 (284)
T ss_pred             CHHHH--HHHHHh----CCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC----------------cC--CCCCC
Confidence            45555  777754    333  457889999999999999999999999987652                22  24689


Q ss_pred             HhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCC-chHHHHHHhcCCHH
Q 008977          134 PLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG-KTALHAAVYTYPTE  212 (547)
Q Consensus       134 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g-~t~Lh~A~~~~~~~  212 (547)
                      |||+|+..|+.+++++|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..++.+
T Consensus        64 pLh~Aa~~g~~eiV~lLL~~Gadvn-~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~e  142 (284)
T PHA02791         64 PLHQAATLEDTKIVKILLFSGMDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS  142 (284)
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHH
Confidence            9999999999999999999998886 678899999999999999999999999999988888777 58999999999999


Q ss_pred             HHHHHHcccccchhhhhhc-cCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchH-HHHHHHcCCHHHHHHHhh
Q 008977          213 VIKQLFLHEEKRSLTAVRD-KYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTA-LHLAAASGHIMVVDRILS  290 (547)
Q Consensus       213 ~v~~Ll~~~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tp-L~~A~~~g~~~~v~~Ll~  290 (547)
                      ++++|+.++  +..   .| ..|.||||+|+..|+.+++++|+++|++++...  ..|.|| ||+|+.+|+.+++++|++
T Consensus       143 ivk~LL~~~--~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d--~~g~t~~L~~Aa~~~~~e~v~lLl~  215 (284)
T PHA02791        143 IVSYFLSEI--PST---FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN--SLLFIPDIKLAIDNKDLEMLQALFK  215 (284)
T ss_pred             HHHHHHhcC--Ccc---cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCccc--CCCCChHHHHHHHcCCHHHHHHHHH
Confidence            999999432  221   13 358899999999999999999999998876543  347765 999999999999999999


Q ss_pred             cCCCccccccCCCCcHHHHH
Q 008977          291 SCDGCCAKVDERGWNFLHFA  310 (547)
Q Consensus       291 ~~~~~~~~~d~~g~t~Lh~A  310 (547)
                      +++++ +..|.+| ++|+.|
T Consensus       216 ~Ga~i-n~~~~~~-~~l~~~  233 (284)
T PHA02791        216 YDINI-YSVNLEN-VLLDDA  233 (284)
T ss_pred             CCCCC-ccCcccC-ccCCCH
Confidence            99887 4446644 666433

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9e-34  Score=269.21  Aligned_cols=235  Identities=15%  Similarity=0.112  Sum_probs=199.6

Q ss_pred             cCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHH
Q 008977           11 KGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAA   90 (547)
Q Consensus        11 ~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa   90 (547)
                      .++.+.+++|++.|.+  .+|.+|+|||       |+|+..  |+.++  +++|++    .+...+..  +|+||||+|+
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpL-------h~Aa~~--g~~ei--v~~Ll~----~ga~~n~~--d~~TpLh~Aa   69 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSAL-------YYAIAD--NNVRL--VCTLLN----AGALKNLL--ENEFPLHQAA   69 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHH-------HHHHHc--CCHHH--HHHHHH----CcCCCcCC--CCCCHHHHHH
Confidence            5678899999998764  5677899999       999999  99999  999976    44555544  4789999999


Q ss_pred             HcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCC-CcHH
Q 008977           91 KKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNN-ETPL  169 (547)
Q Consensus        91 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL  169 (547)
                      ..|+.++|++|++++++                ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..| .|||
T Consensus        70 ~~g~~eiV~lLL~~Gad----------------vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin-~~~~~g~~TpL  132 (284)
T PHA02791         70 TLEDTKIVKILLFSGMD----------------DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSF  132 (284)
T ss_pred             HCCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCcHHH
Confidence            99999999999998876                56779999999999999999999999999999987 466666 5999


Q ss_pred             HHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH-HhHHHhcCChH
Q 008977          170 YMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP-LHHAAYSGREL  248 (547)
Q Consensus       170 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp-Lh~A~~~g~~~  248 (547)
                      |+|+..|+.+++++|++++++... ...|.||||+|+.+|+.++++.|++++.   .++.+|..|.|| ||+|+..|+.+
T Consensus       133 ~~Aa~~g~~eivk~LL~~~~~~~d-~~~g~TpLh~Aa~~g~~eiv~lLL~~gA---d~n~~d~~g~t~~L~~Aa~~~~~e  208 (284)
T PHA02791        133 YHAVMLNDVSIVSYFLSEIPSTFD-LAILLSCIHITIKNGHVDMMILLLDYMT---STNTNNSLLFIPDIKLAIDNKDLE  208 (284)
T ss_pred             HHHHHcCCHHHHHHHHhcCCcccc-cccCccHHHHHHHcCCHHHHHHHHHCCC---CCCcccCCCCChHHHHHHHcCCHH
Confidence            999999999999999998765421 1358999999999999999999995544   456778889987 99999999999


Q ss_pred             HHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCC
Q 008977          249 TSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDG  294 (547)
Q Consensus       249 ~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  294 (547)
                      ++++|+++|++++..+   .+.+||      ++.|++++||++..+
T Consensus       209 ~v~lLl~~Ga~in~~~---~~~~~l------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        209 MLQALFKYDINIYSVN---LENVLL------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             HHHHHHHCCCCCccCc---ccCccC------CCHHHHHHHHHhhhh
Confidence            9999999998885442   234555      899999999998765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=7.7e-34  Score=268.01  Aligned_cols=220  Identities=24%  Similarity=0.293  Sum_probs=188.6

Q ss_pred             HHHHHHcCCchHHHHHhhhhhhh-----hhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccc---
Q 008977            5 LFEAAAKGDIEPFREIARDELES-----IVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLF---   76 (547)
Q Consensus         5 L~~A~~~g~~~~l~~ll~~~~~~-----~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~---   76 (547)
                      .+.|++.|++..+..|+.+..+.     --...+|.|||       -+|+++  |+.++  +++|++.+...+..-.   
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL-------~iaaRn--GH~~v--VeyLle~~~a~~e~~GsV~   76 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPL-------LIAARN--GHADV--VEYLLEHCRASPEQGGSVR   76 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCce-------eeehhc--CcHHH--HHHHHHHhcCCccCCceEE
Confidence            35899999999999888763221     12334677787       999999  99999  9999887655544332   


Q ss_pred             --ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhC
Q 008977           77 --QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVAD  154 (547)
Q Consensus        77 --~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~  154 (547)
                        -.+..|-+||..|+..||.++|+.|++++++                +|.......|||-.||.-|+.+++|+|+++|
T Consensus        77 FDge~IegappLWaAsaAGHl~vVk~L~~~ga~----------------VN~tT~TNStPLraACfDG~leivKyLvE~g  140 (615)
T KOG0508|consen   77 FDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS----------------VNDTTRTNSTPLRAACFDGHLEIVKYLVEHG  140 (615)
T ss_pred             eCCcccCCCchhhHHhccCcHHHHHHHHHhcCc----------------cccccccCCccHHHHHhcchhHHHHHHHHcC
Confidence              3345677899999999999999999999976                5555666779999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCC
Q 008977          155 PHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYG  234 (547)
Q Consensus       155 ~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g  234 (547)
                      +++. ..|..|.|.|++||.+|+.+|+++|++.|+|++.++..|+|+||.|+..|+.|+++.|+.++..-    .+|..|
T Consensus       141 ad~~-IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i----~~d~~G  215 (615)
T KOG0508|consen  141 ADPE-IANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI----DVDGHG  215 (615)
T ss_pred             CCCc-ccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCcee----eecCCC
Confidence            9987 89999999999999999999999999999999999999999999999999999999999655443    347789


Q ss_pred             CcHHhHHHhcCChHHHHHHhcc
Q 008977          235 WTPLHHAAYSGRELTSKLLLDH  256 (547)
Q Consensus       235 ~tpLh~A~~~g~~~~v~~Ll~~  256 (547)
                      .|||..|+..|+.++|+.|++.
T Consensus       216 mtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  216 MTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             CchHHHHhhhcchHHHHHHhcC
Confidence            9999999999999999999953

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-33  Score=287.21  Aligned_cols=253  Identities=18%  Similarity=0.170  Sum_probs=220.2

Q ss_pred             HHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCC
Q 008977            3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKG   82 (547)
Q Consensus         3 ~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g   82 (547)
                      .+|+.|++.|+.+++++|++.|++++..+.+|.|||       |+|+..  |+.++  +++|++    .+...+..+..+
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL-------~~A~~~--~~~~~--v~~Ll~----~ga~~~~~~~~~   68 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGINPNFEIYDGISPI-------KLAMKF--RDSEA--IKLLMK----HGAIPDVKYPDI   68 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHH-------HHHHHc--CCHHH--HHHHHh----CCCCccccCCCc
Confidence            579999999999999999999999999888899998       999999  99999  999977    566677778899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCC
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN  162 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~  162 (547)
                      .||||.|+..|+.++|++|++.++..               .+..+..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus        69 ~t~L~~A~~~g~~~~v~~Ll~~~~~~---------------~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-~~~  132 (413)
T PHA02875         69 ESELHDAVEEGDVKAVEELLDLGKFA---------------DDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD-IPN  132 (413)
T ss_pred             ccHHHHHHHCCCHHHHHHHHHcCCcc---------------cccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCC
Confidence            99999999999999999999987653               12346789999999999999999999999999987 778


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCC-CcHHhHH
Q 008977          163 RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYG-WTPLHHA  241 (547)
Q Consensus       163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g-~tpLh~A  241 (547)
                      ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++..   ++..+..| .||+|+|
T Consensus       133 ~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~---~n~~~~~~~~t~l~~A  209 (413)
T PHA02875        133 TDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN---IDYFGKNGCVAALCYA  209 (413)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCcCCCCCCchHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999955544   44556665 5899999


Q ss_pred             HhcCChHHHHHHhccCCCcceec-CCCCCchHHHHHHHc---CCHHHHHHHh
Q 008977          242 AYSGRELTSKLLLDHDKSAAFIG-GKDRNMTALHLAAAS---GHIMVVDRIL  289 (547)
Q Consensus       242 ~~~g~~~~v~~Ll~~~~~~~~~~-~~~~g~tpL~~A~~~---g~~~~v~~Ll  289 (547)
                      +..|+.+++++|+++|++++... .+..+.||++.++..   ...+.++.++
T Consensus       210 ~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        210 IENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             HHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            99999999999999999987643 234688999987643   3345555444

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.3e-34  Score=308.53  Aligned_cols=328  Identities=27%  Similarity=0.349  Sum_probs=249.5

Q ss_pred             HHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCC
Q 008977            3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKG   82 (547)
Q Consensus         3 ~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g   82 (547)
                      ++||.|+..|+++++.+++.+|+..+..+..|.||+       |.|+..  +..++  ++++++    .+..+...+...
T Consensus       244 ~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tpl-------h~AA~~--~~~e~--~~~ll~----~ga~~~~~~~~~  308 (1143)
T KOG4177|consen  244 TPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPL-------HMAARA--GQVEV--CKLLLQ----NGADVLAKARDD  308 (1143)
T ss_pred             cHHHHHHhccchhHHHHHHhcccccCcccccccCcc-------hhhhcc--chhhh--Hhhhhc----cCcccccccccc
Confidence            466777777777777777777777777776777777       777777  77666  666655    556666666666


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhh-------hhHHH----------HHhcccccCCCCHhHHHHHcCCHH
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGV-------KSAER----------QMLGMTNEEQNTPLHEAVRLRSVD  145 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~-------~~~~~----------~~l~~~~~~g~t~Lh~A~~~g~~~  145 (547)
                      .||+|.|.+.|+.++++++++.+...+..-..+.       .....          ..-...++.|.||+|.|+..|..+
T Consensus       309 kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~  388 (1143)
T KOG4177|consen  309 QTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVS  388 (1143)
T ss_pred             cChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchh
Confidence            7777777777777777777666554322100000       00000          001233556788888888888888


Q ss_pred             HHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcC-CHHHHHHHHcccccc
Q 008977          146 VAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTY-PTEVIKQLFLHEEKR  224 (547)
Q Consensus       146 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~-~~~~v~~Ll~~~~~~  224 (547)
                      ++++++++|.+.+ ..+..|.||||.|+..++.++++.+++++++++..+..|.|++|.|+..+ ..+....++   ..+
T Consensus       389 ~v~Lll~~ga~~~-~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~---~~g  464 (1143)
T KOG4177|consen  389 VVELLLEAGADPN-SAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLL---QYG  464 (1143)
T ss_pred             HHHhhhhccCCcc-cCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHh---hcC
Confidence            8888888888854 77888889999999999888999899888888888899999999999998 667777776   455


Q ss_pred             hhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceec-------------------------------CCCCCchHH
Q 008977          225 SLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIG-------------------------------GKDRNMTAL  273 (547)
Q Consensus       225 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-------------------------------~~~~g~tpL  273 (547)
                      ...+.....|.||||+|+..|+.++++.+++.+...+...                               .+.+|+|||
T Consensus       465 ~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpL  544 (1143)
T KOG4177|consen  465 ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPL  544 (1143)
T ss_pred             CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchH
Confidence            6677788999999999999999999888888663222211                               223688999


Q ss_pred             HHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhh
Q 008977          274 HLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVC  353 (547)
Q Consensus       274 ~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~  353 (547)
                      |.|+..|+..+|++|++++++.... |+.|+||||.|+..|+.      .+..++.++|+++|+.|.+|.||||+|++.|
T Consensus       545 h~A~~~g~v~~VkfLLe~gAdv~ak-~~~G~TPLH~Aa~~G~~------~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg  617 (1143)
T KOG4177|consen  545 HVAVHYGNVDLVKFLLEHGADVNAK-DKLGYTPLHQAAQQGHN------DIAELLLKHGASVNAADLDGFTPLHIAVRLG  617 (1143)
T ss_pred             HHHHhcCCchHHHHhhhCCcccccc-CCCCCChhhHHHHcChH------HHHHHHHHcCCCCCcccccCcchhHHHHHhc
Confidence            9999999999999999999998655 79999999999999974      4667889999999999999999999999998


Q ss_pred             ccc
Q 008977          354 RLS  356 (547)
Q Consensus       354 ~~~  356 (547)
                      ..+
T Consensus       618 ~~~  620 (1143)
T KOG4177|consen  618 YLS  620 (1143)
T ss_pred             ccc
Confidence            654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.9e-34  Score=235.87  Aligned_cols=210  Identities=28%  Similarity=0.281  Sum_probs=180.2

Q ss_pred             CCCCHhHHHHHcCCHHHHHHHHhhCC-CCCCCCCCCCCcHHHHHHHCCCHHHHHHHH-HhCCCCCCCCCCCchHHHHHHh
Q 008977          130 EQNTPLHEAVRLRSVDVAKILIVADP-HVPYSANRNNETPLYMAAANGSVEIVAKIL-QKCPSPAHEGPDGKTALHAAVY  207 (547)
Q Consensus       130 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~-~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll-~~~~~~~~~~~~g~t~Lh~A~~  207 (547)
                      .+.++.+.+|......-++.|++..+ .++...|.+|+||||+||..|+.+++.+|+ +.+..++.+|..|+||||+|+.
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhh
Confidence            35678888888888888999999888 566566669999999999999999999999 4567788889999999999999


Q ss_pred             cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHH
Q 008977          208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDR  287 (547)
Q Consensus       208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  287 (547)
                      .|+.++|+.|+  ...+..++..+..|.|+||+|+..|+.+++++|+++|+.++..  |..|+||||-|+..|+++++++
T Consensus        82 ~g~~evVk~Ll--~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~k--D~~~qtplHRAAavGklkvie~  157 (226)
T KOG4412|consen   82 NGNDEVVKELL--NRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIK--DKQGQTPLHRAAAVGKLKVIEY  157 (226)
T ss_pred             cCcHHHHHHHh--cCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCccc--ccccCchhHHHHhccchhhHHH
Confidence            99999999999  4446678889999999999999999999999999999776554  4569999999999999999999


Q ss_pred             HhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHH
Q 008977          288 ILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAA  351 (547)
Q Consensus       288 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~  351 (547)
                      |+..++.. +.+|..|+||||.|...++.      ....++.+.+++++.+|++| ||+..|..
T Consensus       158 Li~~~a~~-n~qDk~G~TpL~~al~e~~~------d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  158 LISQGAPL-NTQDKYGFTPLHHALAEGHP------DVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             HHhcCCCC-CcccccCccHHHHHHhccCc------hHHHHHHHhccceeeccccC-chHHHHHH
Confidence            99999654 66799999999999766664      34457788899999999999 99888764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-33  Score=229.77  Aligned_cols=188  Identities=30%  Similarity=0.377  Sum_probs=124.4

Q ss_pred             hhcCCccccccc-cCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHH
Q 008977           68 LDLSPSVLFQAD-AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDV  146 (547)
Q Consensus        68 ~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~i  146 (547)
                      ++..+..++.++ .+|+||||+||..|+.++|++|+....-.               ++.+|+.|.||||.|+..|+.++
T Consensus        23 ~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~---------------~ddkDdaGWtPlhia~s~g~~ev   87 (226)
T KOG4412|consen   23 IQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVK---------------PDDKDDAGWTPLHIAASNGNDEV   87 (226)
T ss_pred             HhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCC---------------CCCccccCCchhhhhhhcCcHHH
Confidence            444554444433 37777777777777777777777521111               34456677777777777777777


Q ss_pred             HHHHHhh-CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccch
Q 008977          147 AKILIVA-DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRS  225 (547)
Q Consensus       147 v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~  225 (547)
                      |+.|+.+ |++++ ..+..|+||||+|+.+|+.|++++|+++|+.++.+|..|.||||.|+.-|..+++++|+..   +.
T Consensus        88 Vk~Ll~r~~advn-a~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~---~a  163 (226)
T KOG4412|consen   88 VKELLNRSGADVN-ATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ---GA  163 (226)
T ss_pred             HHHHhcCCCCCcc-eecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhc---CC
Confidence            7777776 66665 6666777777777777777777777777777777777777777777777777777777732   24


Q ss_pred             hhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHH
Q 008977          226 LTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAA  277 (547)
Q Consensus       226 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~  277 (547)
                      ..+.+|+.|+||||.|...|+.+...+|+++|++....+.  +| ||+..|+
T Consensus       164 ~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edk--e~-t~~~~a~  212 (226)
T KOG4412|consen  164 PLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDK--EG-TALRIAC  212 (226)
T ss_pred             CCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccc--cC-chHHHHH
Confidence            4566677777777777666777777777777766555433  35 7766654

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=290.71  Aligned_cols=209  Identities=18%  Similarity=0.144  Sum_probs=170.1

Q ss_pred             chHHHHHhhhhhhhhhcccCCCceeccCCccceeE---eeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHH
Q 008977           14 IEPFREIARDELESIVTDLMNNTVLYGNITASHLT---LQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAA   90 (547)
Q Consensus        14 ~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A---~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa   90 (547)
                      ++.+++|+.++...+..|.+|+|||       |+|   +..  |+.++  +++|++    .+.+++..+..|.||||+|+
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~L-------h~a~~~~~~--~~~~~--v~~Ll~----~ga~v~~~~~~g~TpL~~Aa   76 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNAL-------HAYLFNEHC--NNVEV--VKLLLD----SGTNPLHKNWRQLTPLEEYT   76 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHH-------HHHHHhhhc--CcHHH--HHHHHH----CCCCccccCCCCCCHHHHHH
Confidence            5678888888877788788999999       996   445  77899  999976    67888899999999999999


Q ss_pred             HcCCHHH----HHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCC
Q 008977           91 KKGDAAI----VKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNE  166 (547)
Q Consensus        91 ~~g~~~~----v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~  166 (547)
                      ..|+.++    ++.|++.+..                .+..  +..+++|.|+..|+.+++++|+++|++++ .+|..|.
T Consensus        77 ~~g~~~v~~~~~~~Ll~~~~~----------------~n~~--~~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~  137 (661)
T PHA02917         77 NSRHVKVNKDIAMALLEATGY----------------SNIN--DFNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHR  137 (661)
T ss_pred             HcCChhHHHHHHHHHHhccCC----------------CCCC--CcchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCc
Confidence            9999654    5666654321                1111  23477888999999999999999999998 7899999


Q ss_pred             cHHHHHH--HCCCHHHHHHHHHhCCCCCCCCC---CC-----------chHHHHHHh-----------cCCHHHHHHHHc
Q 008977          167 TPLYMAA--ANGSVEIVAKILQKCPSPAHEGP---DG-----------KTALHAAVY-----------TYPTEVIKQLFL  219 (547)
Q Consensus       167 tpL~~A~--~~g~~~iv~~Ll~~~~~~~~~~~---~g-----------~t~Lh~A~~-----------~~~~~~v~~Ll~  219 (547)
                      ||||.++  ..|+.+++++|+++|++++..|.   .|           .||||+|+.           +++.+++++|+.
T Consensus       138 T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~  217 (661)
T PHA02917        138 SVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN  217 (661)
T ss_pred             cHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHH
Confidence            9999654  57899999999999999976543   33           599999986           468999999994


Q ss_pred             ccccchhhhhhccCCCcHHhHHHhcCCh--HHHHHHhccCCCc
Q 008977          220 HEEKRSLTAVRDKYGWTPLHHAAYSGRE--LTSKLLLDHDKSA  260 (547)
Q Consensus       220 ~~~~~~~~~~~d~~g~tpLh~A~~~g~~--~~v~~Ll~~~~~~  260 (547)
                      ++   ..++.+|.+|.||||+|+..|+.  +++++|++ |.+.
T Consensus       218 ~G---advn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        218 HG---IKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             CC---CCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence            44   45788899999999999999985  79999986 6543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-32  Score=285.81  Aligned_cols=256  Identities=17%  Similarity=0.163  Sum_probs=216.4

Q ss_pred             HHHHHHHHc--CCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeec----CCceecchhhHHHHHhhcCCcccc
Q 008977            3 RKLFEAAAK--GDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTE----EGEIVSVSTKFVEHILDLSPSVLF   76 (547)
Q Consensus         3 ~~L~~A~~~--g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~----~g~~~~~~~~~L~~~~~~~~~~~~   76 (547)
                      ++|+.++..  ++.++++.|+++|++++..+ .+.|||       |.|+...    .++.++  +++|++    .|.+++
T Consensus        37 t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL-------~~a~~~~~~~~~~~~~i--v~~Ll~----~Gadin  102 (494)
T PHA02989         37 SILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPL-------CAVLRNREITSNKIKKI--VKLLLK----FGADIN  102 (494)
T ss_pred             CHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcH-------HHHHhccCcchhhHHHH--HHHHHH----CCCCCC
Confidence            456554443  36899999999999999876 567777       9887651    134567  788866    788899


Q ss_pred             ccccCCChHHHHHHHc---CCHHHHHHHHHHhhcCCchhhhhhhhHHHHHh-cccccCCCCHhHHHHHc--CCHHHHHHH
Q 008977           77 QADAKGDSPLHLAAKK---GDAAIVKFLIKFAKKQPRDLQRGVKSAERQML-GMTNEEQNTPLHEAVRL--RSVDVAKIL  150 (547)
Q Consensus        77 ~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~t~Lh~A~~~--g~~~iv~~L  150 (547)
                      .+|..|.||||.|+..   |+.++|++|+++|++                + +.+|..|.||||+|+..  ++.+++++|
T Consensus       103 ~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad----------------in~~~d~~g~tpLh~a~~~~~~~~~iv~~L  166 (494)
T PHA02989        103 LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN----------------VNDVKNSRGYNLLHMYLESFSVKKDVIKIL  166 (494)
T ss_pred             CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCC----------------cccccCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            9999999999998865   689999999999987                4 56789999999999764  689999999


Q ss_pred             HhhCCCCCCCCCCCCCcHHHHHHHCC----CHHHHHHHHHhCCCCCCCCCCCchHHHHHHhc------CCHHHHHHHHcc
Q 008977          151 IVADPHVPYSANRNNETPLYMAAANG----SVEIVAKILQKCPSPAHEGPDGKTALHAAVYT------YPTEVIKQLFLH  220 (547)
Q Consensus       151 l~~~~~~~~~~~~~g~tpL~~A~~~g----~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~------~~~~~v~~Ll~~  220 (547)
                      +++|++++...+..|.||||.|+..+    +.+++++|+++|++++..+..+.++||.++..      +..+++++|+. 
T Consensus       167 l~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-  245 (494)
T PHA02989        167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-  245 (494)
T ss_pred             HHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-
Confidence            99999988557889999999998764    89999999999999999999999999987764      34677777662 


Q ss_pred             cccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCC
Q 008977          221 EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDG  294 (547)
Q Consensus       221 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  294 (547)
                         ...++.+|..|+||||+|+..|+.+++++|+++|++++..+  ..|.||||+|++.|+.++++.|++.+|.
T Consensus       246 ---~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d--~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        246 ---YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVS--KDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             ---CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccC--CCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence               35678899999999999999999999999999999887664  4699999999999999999999998764

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=282.47  Aligned_cols=317  Identities=11%  Similarity=0.056  Sum_probs=240.8

Q ss_pred             CHHHHHHHHcC--CchHHHHHhhhhh--hhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccc
Q 008977            2 DRKLFEAAAKG--DIEPFREIARDEL--ESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQ   77 (547)
Q Consensus         2 ~~~L~~A~~~g--~~~~l~~ll~~~~--~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~   77 (547)
                      .+|||.|+..|  +.|+++.|++.|+  +++..+..++++|       |.++..++++.++  +++|+.   .++.+++.
T Consensus        78 ~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l-------~~y~~s~n~~~~~--vk~Li~---~~~~~~~~  145 (672)
T PHA02730         78 LTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDL-------YSYMSSDNIDLRL--LKYLIV---DKRIRPSK  145 (672)
T ss_pred             CChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchH-------HHHHHhcCCcHHH--HHHHHH---hcCCChhh
Confidence            47999999977  7999999999965  4455565688888       8888854488888  999964   23333333


Q ss_pred             c-----ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCc-hhhhhhhhHHHHHhcccccCC-CCHhHHHH------HcCCH
Q 008977           78 A-----DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPR-DLQRGVKSAERQMLGMTNEEQ-NTPLHEAV------RLRSV  144 (547)
Q Consensus        78 ~-----~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~~~~~~l~~~~~~g-~t~Lh~A~------~~g~~  144 (547)
                      .     +..|.+|+++|+..+++|+|++|+++|++... ..+          -...+..+ .|.||+++      ..++.
T Consensus       146 ~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~----------~~~~~~~~c~~~l~~~il~~~~~~~n~~  215 (672)
T PHA02730        146 NTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFR----------SCMYDSDRCKNSLHYYILSHRESESLSK  215 (672)
T ss_pred             hhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccc----------cccccCCccchhHHHHHHhhhhhhccCH
Confidence            3     23789999999999999999999999987420 000          01123333 45566443      45789


Q ss_pred             HHHHHHHhhCCCCCCCCCCCCCcHHHH--HHHCCCHHHHHHHHH--------------------------------hCCC
Q 008977          145 DVAKILIVADPHVPYSANRNNETPLYM--AAANGSVEIVAKILQ--------------------------------KCPS  190 (547)
Q Consensus       145 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~--A~~~g~~~iv~~Ll~--------------------------------~~~~  190 (547)
                      |++++|+++|++++ .+|..|+||||+  +...|+.|++++|++                                +|+|
T Consensus       216 eiv~lLIs~GadIN-~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  294 (672)
T PHA02730        216 DVIKCLIDNNVSIH-GRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVD  294 (672)
T ss_pred             HHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcc
Confidence            99999999999997 889999999995  555677999999999                                5666


Q ss_pred             CCC--------------------CCCCCch---------------------HHHHHHhcC---CHHHHHHHHcccccchh
Q 008977          191 PAH--------------------EGPDGKT---------------------ALHAAVYTY---PTEVIKQLFLHEEKRSL  226 (547)
Q Consensus       191 ~~~--------------------~~~~g~t---------------------~Lh~A~~~~---~~~~v~~Ll~~~~~~~~  226 (547)
                      ...                    .+..|.+                     .||.-...+   +.++++.|+++++.   
T Consensus       295 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAd---  371 (672)
T PHA02730        295 MEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGAT---  371 (672)
T ss_pred             hHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCC---
Confidence            533                    3455544                     567666655   58999999966654   


Q ss_pred             hhhhccCCCcHHhHHHhcCC----hHHHHHHhccCCCcceecCCCCCchHHHH---HHHcC---------CHHHHHHHhh
Q 008977          227 TAVRDKYGWTPLHHAAYSGR----ELTSKLLLDHDKSAAFIGGKDRNMTALHL---AAASG---------HIMVVDRILS  290 (547)
Q Consensus       227 ~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~---A~~~g---------~~~~v~~Ll~  290 (547)
                      ++.. ..|.||||+|+..++    .+++++|+++|++.+....+..|.||||.   |...+         ..+++++|++
T Consensus       372 IN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs  450 (672)
T PHA02730        372 MDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK  450 (672)
T ss_pred             CCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh
Confidence            4443 789999999998875    89999999999865555555679999994   33332         2357999999


Q ss_pred             cCCCccccccCCCCcHHHHHHHhcCcccccceeeeccccccccccccccc-CCCchhHHHHHh
Q 008977          291 SCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDV-NGNTPLHVVAAV  352 (547)
Q Consensus       291 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~-~G~T~Lh~A~~~  352 (547)
                      ++++. +..|..|+||||+|+..++.+      +...++..|+++|.+|. .|+||||+|+..
T Consensus       451 ~GADI-NakD~~G~TPLh~Aa~~~~~e------ive~LI~~GAdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        451 YMDDI-DMIDNENKTLLYYAVDVNNIQ------FARRLLEYGASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             cccch-hccCCCCCCHHHHHHHhCCHH------HHHHHHHCCCCCCCCCCcCCcCHHHHHHHh
Confidence            99986 556999999999999988753      34567889999999997 599999999863

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.4e-32  Score=283.63  Aligned_cols=283  Identities=12%  Similarity=0.086  Sum_probs=221.6

Q ss_pred             CchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHc
Q 008977           13 DIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKK   92 (547)
Q Consensus        13 ~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~   92 (547)
                      +.+.++.|++.+ +++... .+.|++       +.+...+.++.++  +++|++    .|.+++..|..|.||||.|+.+
T Consensus        17 ~~~~v~~ll~~~-~~~~~~-~~~~~~-------~~yl~~~~~~~~i--v~~Ll~----~Gadvn~~d~~g~TpL~~~~~n   81 (489)
T PHA02798         17 KLSTVKLLIKSC-NPNEIV-NEYSIF-------QKYLQRDSPSTDI--VKLFIN----LGANVNGLDNEYSTPLCTILSN   81 (489)
T ss_pred             cHHHHHHHHhcC-Chhhhc-ccchHH-------HHHHhCCCCCHHH--HHHHHH----CCCCCCCCCCCCCChHHHHHHh
Confidence            457889999764 333333 566766       5455554478888  999977    6888999999999999998864


Q ss_pred             -----CCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcC---CHHHHHHHHhhCCCCCCCCCCC
Q 008977           93 -----GDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLR---SVDVAKILIVADPHVPYSANRN  164 (547)
Q Consensus        93 -----g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~  164 (547)
                           ++.+++++|+++|++                ++.+|..|.||||+|+..+   +.+++++|+++|++++ ..|..
T Consensus        82 ~~~~~~~~~iv~~Ll~~Gad----------------iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~  144 (489)
T PHA02798         82 IKDYKHMLDIVKILIENGAD----------------INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-LLDKD  144 (489)
T ss_pred             HHhHHhHHHHHHHHHHCCCC----------------CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCC
Confidence                 778999999999887                6778999999999999875   7899999999999987 78899


Q ss_pred             CCcHHHHHHHCCC---HHHHHHHHHhCCCCCCCC-CCCchHHHHHHhc----CCHHHHHHHHcccccchhhhhhccCCCc
Q 008977          165 NETPLYMAAANGS---VEIVAKILQKCPSPAHEG-PDGKTALHAAVYT----YPTEVIKQLFLHEEKRSLTAVRDKYGWT  236 (547)
Q Consensus       165 g~tpL~~A~~~g~---~~iv~~Ll~~~~~~~~~~-~~g~t~Lh~A~~~----~~~~~v~~Ll~~~~~~~~~~~~d~~g~t  236 (547)
                      |.||||+|++.|+   .+++++|+++|++++..+ ..|.||||.++..    ++.+++++|++++   ..++..+..|.+
T Consensus       145 g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~G---a~i~~~~~~~~~  221 (489)
T PHA02798        145 GFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNG---FIINKENKSHKK  221 (489)
T ss_pred             CCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCC---CCcccCCccccc
Confidence            9999999999887   899999999999988764 5788999988764    4789999999444   445666778888


Q ss_pred             HHh-------HHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHH
Q 008977          237 PLH-------HAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHF  309 (547)
Q Consensus       237 pLh-------~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  309 (547)
                      +++       .+...++.+++++|+. +.+++.  .+..|.||||+|+..|+.+++++|++.|++. +.+|..|+||||+
T Consensus       222 ~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~--~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi-n~~d~~G~TpL~~  297 (489)
T PHA02798        222 KFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQ--VDELGFNPLYYSVSHNNRKIFEYLLQLGGDI-NIITELGNTCLFT  297 (489)
T ss_pred             hHHHHHHHHHhhcccchHHHHHHHHh-cCCCCC--cCcCCccHHHHHHHcCcHHHHHHHHHcCCcc-cccCCCCCcHHHH
Confidence            876       2445567888888766 455443  3456999999999999999999999999886 5669999999999


Q ss_pred             HHHhcCcccccceeeeccccccccccccccc
Q 008977          310 AMVSLDLLQSSGLVIKHPTVRNSRLLIAEDV  340 (547)
Q Consensus       310 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~  340 (547)
                      |++.++..      +...+++.+.+++..+.
T Consensus       298 A~~~~~~~------iv~~lL~~~~~~~~i~~  322 (489)
T PHA02798        298 AFENESKF------IFNSILNKKPNKNTISY  322 (489)
T ss_pred             HHHcCcHH------HHHHHHccCCCHHHHHH
Confidence            99988753      22345566666664433

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.4e-32  Score=283.66  Aligned_cols=245  Identities=21%  Similarity=0.191  Sum_probs=197.2

Q ss_pred             cCCChHHHHHHH--cCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHc-----CCHHHHHHHHh
Q 008977           80 AKGDSPLHLAAK--KGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL-----RSVDVAKILIV  152 (547)
Q Consensus        80 ~~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~-----g~~~iv~~Ll~  152 (547)
                      ..|.|+++.+..  .++.++|++|+++|++                ++.++..|.||||.|+..     ++.+++++|++
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad----------------vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~   97 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGAN----------------VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIE   97 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCC----------------CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHH
Confidence            446777764444  4588999999999987                667789999999998764     67899999999


Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHCC---CHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC---HHHHHHHHcccccchh
Q 008977          153 ADPHVPYSANRNNETPLYMAAANG---SVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP---TEVIKQLFLHEEKRSL  226 (547)
Q Consensus       153 ~~~~~~~~~~~~g~tpL~~A~~~g---~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~---~~~v~~Ll~~~~~~~~  226 (547)
                      +|++++ ..|..|.||||+|+..+   +.+++++|+++|++++..|..|.||||+|+..++   .++++.|++.+   ..
T Consensus        98 ~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g---ad  173 (489)
T PHA02798         98 NGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG---VD  173 (489)
T ss_pred             CCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhC---CC
Confidence            999987 77889999999999875   6899999999999999999999999999999887   89999999443   33


Q ss_pred             hhhh-ccCCCcHHhHHHhc----CChHHHHHHhccCCCcceecCCCCCchHHH-------HHHHcCCHHHHHHHhhcCCC
Q 008977          227 TAVR-DKYGWTPLHHAAYS----GRELTSKLLLDHDKSAAFIGGKDRNMTALH-------LAAASGHIMVVDRILSSCDG  294 (547)
Q Consensus       227 ~~~~-d~~g~tpLh~A~~~----g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~-------~A~~~g~~~~v~~Ll~~~~~  294 (547)
                      ++.+ +..|.||||.++..    ++.+++++|+++|++++....  .|.++++       .+...++.+++++|+. +.+
T Consensus       174 in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~--~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d  250 (489)
T PHA02798        174 INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK--SHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID  250 (489)
T ss_pred             cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCc--cccchHHHHHHHHHhhcccchHHHHHHHHh-cCC
Confidence            4444 45788999988765    478999999999987765433  4667765       2445677888888776 454


Q ss_pred             ccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhc
Q 008977          295 CCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR  354 (547)
Q Consensus       295 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~  354 (547)
                       ++.+|..|+||||+|+..++.+      +...|++.|++++.+|..|+||||+|++.+.
T Consensus       251 -vN~~d~~G~TPL~~A~~~~~~~------~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        251 -INQVDELGFNPLYYSVSHNNRK------IFEYLLQLGGDINIITELGNTCLFTAFENES  303 (489)
T ss_pred             -CCCcCcCCccHHHHHHHcCcHH------HHHHHHHcCCcccccCCCCCcHHHHHHHcCc
Confidence             4677999999999999988753      4456778899999999999999999998764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=2.2e-31  Score=251.54  Aligned_cols=199  Identities=30%  Similarity=0.443  Sum_probs=171.7

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977           78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV  157 (547)
Q Consensus        78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  157 (547)
                      ...+|.|||-+||++||.++|++|+++....+..-  +.     --.+-..-+|-+||-.|+..||.++||.|+++|+++
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~--Gs-----V~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V  110 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQG--GS-----VRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV  110 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCC--ce-----EEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc
Confidence            46678899999999999999999999654432210  00     001223557899999999999999999999999998


Q ss_pred             CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                      + .......|||--||.-|+.|++++|+++|+|++..|+.|.|.||+|+.+|+.+++++|+   +.+.+++.++..|+|+
T Consensus       111 N-~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLl---e~gADvn~ks~kGNTA  186 (615)
T KOG0508|consen  111 N-DTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLL---EQGADVNAKSYKGNTA  186 (615)
T ss_pred             c-cccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHH---HhCCCcchhcccCchH
Confidence            8 44455669999999999999999999999999999999999999999999999999999   4556688999999999


Q ss_pred             HhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhh
Q 008977          238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS  290 (547)
Q Consensus       238 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  290 (547)
                      ||.++..|+.+++++|+.+|+.+..   +..|.|||..|+..|+.++|+.|++
T Consensus       187 LH~caEsG~vdivq~Ll~~ga~i~~---d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  187 LHDCAESGSVDIVQLLLKHGAKIDV---DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHhhhhcccHHHHHHHHhCCceeee---cCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999986654   3469999999999999999999984

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=7.9e-32  Score=287.37  Aligned_cols=305  Identities=25%  Similarity=0.310  Sum_probs=201.1

Q ss_pred             HHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCCh
Q 008977            5 LFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDS   84 (547)
Q Consensus         5 L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t   84 (547)
                      +|.++..+..+....+.+.+..-......|.+++       |.|+..  |..+.  ++.++.    .+...+..+.+|.|
T Consensus       345 lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl-------~la~~~--g~~~~--v~Lll~----~ga~~~~~gk~gvT  409 (1143)
T KOG4177|consen  345 LHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPL-------HLAVKS--GRVSV--VELLLE----AGADPNSAGKNGVT  409 (1143)
T ss_pred             ccHhhhhhhHHHHHHhhccccccCcccccCCcch-------hhhccc--CchhH--HHhhhh----ccCCcccCCCCCcc
Confidence            4444444444433333333333333333344444       555555  55444  444433    33334445555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcC-CHHHHHHHHhhCCCCCCCCCC
Q 008977           85 PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLR-SVDVAKILIVADPHVPYSANR  163 (547)
Q Consensus        85 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~~~  163 (547)
                      |||.|+..++.++|+.+++++++                .+.++..|.||+|+|+..| ..++...+++.+.+.+ ....
T Consensus       410 plh~aa~~~~~~~v~l~l~~gA~----------------~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n-~~s~  472 (1143)
T KOG4177|consen  410 PLHVAAHYGNPRVVKLLLKRGAS----------------PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPN-AVSK  472 (1143)
T ss_pred             eeeehhhccCcceEEEEeccCCC----------------hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcc-hhcc
Confidence            55555555555555555554444                3444556666666666666 5566666666655554 4555


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977          164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY  243 (547)
Q Consensus       164 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~  243 (547)
                      .|.||||+|+..|+.++++.+++.++..+.....+.+++|.|...+...+++.++.+   +...+.++.+|.||||.|+.
T Consensus       473 ~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~---ga~v~~~~~r~~TpLh~A~~  549 (1143)
T KOG4177|consen  473 QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEH---GANVDLRTGRGYTPLHVAVH  549 (1143)
T ss_pred             ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhc---CCceehhcccccchHHHHHh
Confidence            666666666666666666666666655555555666666666666666666666633   33456678899999999999


Q ss_pred             cCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCccccccee
Q 008977          244 SGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLV  323 (547)
Q Consensus       244 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~  323 (547)
                      .|+..+|++|+++|++....+  +.|+||||.||..|+.+++++|+++|++. +..|.+|.||||+|+..+....+    
T Consensus       550 ~g~v~~VkfLLe~gAdv~ak~--~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v-na~d~~g~TpL~iA~~lg~~~~~----  622 (1143)
T KOG4177|consen  550 YGNVDLVKFLLEHGADVNAKD--KLGYTPLHQAAQQGHNDIAELLLKHGASV-NAADLDGFTPLHIAVRLGYLSVV----  622 (1143)
T ss_pred             cCCchHHHHhhhCCccccccC--CCCCChhhHHHHcChHHHHHHHHHcCCCC-CcccccCcchhHHHHHhcccchh----
Confidence            999999999999999987766  46999999999999999999999999987 55699999999999999986543    


Q ss_pred             eeccccccccc-----ccccccCCCchhHHHHHhh
Q 008977          324 IKHPTVRNSRL-----LIAEDVNGNTPLHVVAAVC  353 (547)
Q Consensus       324 ~~~~l~~~~~~-----~~~~d~~G~T~Lh~A~~~~  353 (547)
                        ..+...++.     ...++.+|.+|..++....
T Consensus       623 --k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~~  655 (1143)
T KOG4177|consen  623 --KLLKVVTATPAATDPVKENRKGAVPEDVAEELD  655 (1143)
T ss_pred             --hHHHhccCccccccchhhhhcccChhhHHHHhh
Confidence              333333444     6778999999999987763

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=3.1e-30  Score=254.56  Aligned_cols=211  Identities=28%  Similarity=0.309  Sum_probs=182.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHH-hhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  160 (547)
                      -.+.++.|+..|+.+-|+.|++. +.+                ++..|++|.|+||+|+.+++.+++++|+++|++++..
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~----------------v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~  107 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGES----------------VNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAI  107 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcC----------------CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCcccc
Confidence            35678899999999999999997 544                5567889999999999999999999999999999977


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhH
Q 008977          161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHH  240 (547)
Q Consensus       161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~  240 (547)
                      ....+.||||+|+++|+..++++|+++|++++.+|.+|.+|+|.|++.++.-.+-+++.   +..+.+.+|.+|+||||+
T Consensus       108 gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~---~~~d~d~~D~~grTpLmw  184 (600)
T KOG0509|consen  108 GGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLS---KGADIDLRDNNGRTPLMW  184 (600)
T ss_pred             CCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHH---hcccCCCcCCCCCCHHHH
Confidence            66888999999999999999999999999999999999999999999999999999993   346678889999999999


Q ss_pred             HHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHh
Q 008977          241 AAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVS  313 (547)
Q Consensus       241 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  313 (547)
                      |+.+|....++.|++-++.....++. +|.||||.|+..|+.++++ |+..+......+|.+|.||+.+|.+.
T Consensus       185 Aaykg~~~~v~~LL~f~a~~~~~d~~-~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  185 AAYKGFALFVRRLLKFGASLLLTDDN-HGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHhcccHHHHHHHHhcccccccccc-cCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            99999988789999888877666543 7888999998888888888 55555555577788888888888655

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=9.4e-28  Score=237.04  Aligned_cols=210  Identities=25%  Similarity=0.293  Sum_probs=188.5

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhh-CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC-CCCchHHHHHHhc
Q 008977          131 QNTPLHEAVRLRSVDVAKILIVA-DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG-PDGKTALHAAVYT  208 (547)
Q Consensus       131 g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~-~~g~t~Lh~A~~~  208 (547)
                      -..-++.|++.|..+-++.|++. +.+++ ..|.+|.|+||+|+.+++.+++++|+++|+++|..+ .-+.||||+|+++
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~-~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVN-NPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCC-CCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            35678899999999999999998 76665 788899999999999999999999999999999977 6789999999999


Q ss_pred             CCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHH
Q 008977          209 YPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRI  288 (547)
Q Consensus       209 ~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  288 (547)
                      |+..++.+|++++++   ++.+|.+|.+|||+|+..|+.-++-+|+.++.+.+..+.  +|+||||+|+.+|+...++.|
T Consensus       123 G~~~vv~lLlqhGAd---pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~--~grTpLmwAaykg~~~~v~~L  197 (600)
T KOG0509|consen  123 GHISVVDLLLQHGAD---PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN--NGRTPLMWAAYKGFALFVRRL  197 (600)
T ss_pred             CcHHHHHHHHHcCCC---CceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC--CCCCHHHHHHHhcccHHHHHH
Confidence            999999999966655   556799999999999999999999999999988777654  599999999999999889999


Q ss_pred             hhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHh
Q 008977          289 LSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       289 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                      ++.++......|++|+||||.|+..|+..     .+. ++.+.+++.+..|.+|.||+++|.+.
T Consensus       198 L~f~a~~~~~d~~~g~TpLHwa~~~gN~~-----~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  198 LKFGASLLLTDDNHGNTPLHWAVVGGNLT-----AVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHhcccccccccccCCchHHHHHhcCCcc-----eEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            99999987776699999999999999964     333 67778899999999999999999765

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=250.36  Aligned_cols=302  Identities=13%  Similarity=0.052  Sum_probs=206.9

Q ss_pred             hhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHH-cCCHHHHHHH
Q 008977           23 DELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAK-KGDAAIVKFL  101 (547)
Q Consensus        23 ~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~-~g~~~~v~~L  101 (547)
                      -+...+..+.+|.+++       |+-+.. +|+.++  +++|+.    .+++++.++..|.||+|+|+. .|++|++++|
T Consensus        60 ~~~~~~~~n~~~~~~~-------~~~~s~-n~~lEl--vk~LI~----~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~L  125 (631)
T PHA02792         60 LLSSVDYKNINDFDIF-------EYLCSD-NIDIEL--LKLLIS----KGLEINSIKNGINIVEKYATTSNPNVDVFKLL  125 (631)
T ss_pred             HHhCCCcCccCCccHH-------HHHHHh-cccHHH--HHHHHH----cCCCcccccCCCCcceeEeecCCCChHHHHHH
Confidence            3344444444555555       443321 155555  665544    455555555555666666644 4666666666


Q ss_pred             HHHhhcCCchhh-------------------hhhh-hHHHHHhcccccCCCCHhHHHHHcC-------CHHHHHHHHhhC
Q 008977          102 IKFAKKQPRDLQ-------------------RGVK-SAERQMLGMTNEEQNTPLHEAVRLR-------SVDVAKILIVAD  154 (547)
Q Consensus       102 l~~~~~~~~~~~-------------------~~~~-~~~~~~l~~~~~~g~t~Lh~A~~~g-------~~~iv~~Ll~~~  154 (547)
                      ++.|++......                   .+.+ ......++.+++.|.||||+|+..+       +.|+++.|+++|
T Consensus       126 l~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g  205 (631)
T PHA02792        126 LDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHE  205 (631)
T ss_pred             HHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCC
Confidence            666554211101                   1100 0112346788999999999999999       899999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHCC--CHHHHHHHHHhCCCCCC---------------CC--C---------CCc-------
Q 008977          155 PHVPYSANRNNETPLYMAAANG--SVEIVAKILQKCPSPAH---------------EG--P---------DGK-------  199 (547)
Q Consensus       155 ~~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~---------------~~--~---------~g~-------  199 (547)
                      ++++ ..|..|.||||+|+.+.  +.|+++.|++...+...               .+  -         .|.       
T Consensus       206 ~~~~-~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~  284 (631)
T PHA02792        206 KEMR-YYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILE  284 (631)
T ss_pred             CCcC-ccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhh
Confidence            9987 67889999999999999  88999999875321100               00  0         011       


Q ss_pred             -----------------------hHHHHHHhcC--CHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHh
Q 008977          200 -----------------------TALHAAVYTY--PTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL  254 (547)
Q Consensus       200 -----------------------t~Lh~A~~~~--~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  254 (547)
                                             -.||.-..++  +.++++.|+.++....     ......+++.|+..|+.+++++|+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-----r~~~~n~~~~Aa~~gn~eIVelLI  359 (631)
T PHA02792        285 LCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY-----RFKHINKYFQKFDNRDPKVVEYIL  359 (631)
T ss_pred             hhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc-----cCCcchHHHHHHHcCCHHHHHHHH
Confidence                                   1133333333  4577888885544321     123556799999999999999999


Q ss_pred             ccCCCcceecCCCCCchHHHHHHHcCCH---HHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccc
Q 008977          255 DHDKSAAFIGGKDRNMTALHLAAASGHI---MVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRN  331 (547)
Q Consensus       255 ~~~~~~~~~~~~~~g~tpL~~A~~~g~~---~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~  331 (547)
                      ++|++++..+.+..+.||||.|+..+..   ++++.|++++++. +.+|..|+||||+|+..++.+      +...++++
T Consensus       360 s~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI-N~kD~~G~TPLh~Aa~~~n~e------ivelLLs~  432 (631)
T PHA02792        360 KNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI-NKIDKHGRSILYYCIESHSVS------LVEWLIDN  432 (631)
T ss_pred             HcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc-ccccccCcchHHHHHHcCCHH------HHHHHHHC
Confidence            9999987665544467999998877664   4688889999886 556999999999999988753      44677788


Q ss_pred             cccccccccCCCchhHHHHH
Q 008977          332 SRLLIAEDVNGNTPLHVVAA  351 (547)
Q Consensus       332 ~~~~~~~d~~G~T~Lh~A~~  351 (547)
                      |++++.+|..|+||||+|+.
T Consensus       433 GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        433 GADINITTKYGSTCIGICVI  452 (631)
T ss_pred             CCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999976

>PF13962 PGG: Domain of unknown function

Probab=99.95  E-value=2e-28  Score=199.88  Aligned_cols=111  Identities=41%  Similarity=0.665  Sum_probs=97.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhcccCCCcccCCCCCCCCccccccCc-ccchhhhhhHHHHHHHHHHHHHHHhcccc
Q 008977          394 EEALKEMQSLHTVVATLIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNA-GFQAFVVSDVIAMVLSVSAIFIYFLTPIK  472 (547)
Q Consensus       394 ~~~~~~~~~~~~vVA~Liatv~faa~~t~PGg~~~~~~~~~G~~~~~~~~-~f~~F~~~~~~a~~~S~~~~~~~~~~~~~  472 (547)
                      +||+++++++++|||+|||||||||+||||||+||+++ +.|+|++.+++ .|++|+++|++||++|++++++++. .+.
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~-~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~-~~~   78 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD-DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLIS-GLD   78 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc-CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            38999999999999999999999999999999999864 78999999888 9999999999999999999999883 221


Q ss_pred             c-ccccchhhhHHHHHHHHHHHHHHHHHHhhchhh
Q 008977          473 T-LRQTPFLSEVPHYLILVSLLAMVVAFTTGTYAV  506 (547)
Q Consensus       473 ~-~~~~~~~~~~~~~~~~~s~~~m~~af~~~~~~v  506 (547)
                      + .+.....+.....++|+|+.+|++||++|+|+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   79 DFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            1 222245677888999999999999999999976

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.3e-26  Score=236.17  Aligned_cols=311  Identities=15%  Similarity=0.068  Sum_probs=230.7

Q ss_pred             CHHHHHHHHcCCchHH--HHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCce-ecchhhHHHHHhhcCCcccccc
Q 008977            2 DRKLFEAAAKGDIEPF--REIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEI-VSVSTKFVEHILDLSPSVLFQA   78 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l--~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~-~~~~~~~L~~~~~~~~~~~~~~   78 (547)
                      |.-|+..|+.=++++.  +.|+++|+++-.. .+|.|||       |.-...  .+. .-  ++.++.++    ...+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~t~~-------~~~~~~--~~~~~~--~~~~~~~~----~~~~~~   67 (631)
T PHA02792          4 DKILYDSCKTFNIDACSAQSLIESGANPLYE-YDGETPL-------KAYVTK--KNNNIK--NDVVILLL----SSVDYK   67 (631)
T ss_pred             hhHHHhHhhccchhHHHHHHHHHcCCCcccc-cCCCccH-------HHHHhh--hhhhHH--HHHHHHHH----hCCCcC
Confidence            4556777777766655  5588999887663 4777888       877655  332 22  45555532    234467


Q ss_pred             ccCCChHHHHHH-HcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHH-cCCHHHHHHHHhhCCC
Q 008977           79 DAKGDSPLHLAA-KKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR-LRSVDVAKILIVADPH  156 (547)
Q Consensus        79 ~~~g~t~Lh~Aa-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~-~g~~~iv~~Ll~~~~~  156 (547)
                      |.+|.+|+|+-+ .+|+.|+|++|+++|++                ++.++..|.+|+|+|+. .++.|++++|+++|++
T Consensus        68 n~~~~~~~~~~~s~n~~lElvk~LI~~GAd----------------vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad  131 (631)
T PHA02792         68 NINDFDIFEYLCSDNIDIELLKLLISKGLE----------------INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIP  131 (631)
T ss_pred             ccCCccHHHHHHHhcccHHHHHHHHHcCCC----------------cccccCCCCcceeEeecCCCChHHHHHHHHCCCC
Confidence            888999998755 58899999999999988                66778889999999966 6999999999999976


Q ss_pred             CC-----------------------------------CCCCCCCCcHHHHHHHCC-------CHHHHHHHHHhCCCCCCC
Q 008977          157 VP-----------------------------------YSANRNNETPLYMAAANG-------SVEIVAKILQKCPSPAHE  194 (547)
Q Consensus       157 ~~-----------------------------------~~~~~~g~tpL~~A~~~g-------~~~iv~~Ll~~~~~~~~~  194 (547)
                      ..                                   ...|..|.||||+|+..+       +.|+++.|+++|++++..
T Consensus       132 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~  211 (631)
T PHA02792        132 TCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYY  211 (631)
T ss_pred             cccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCcc
Confidence            21                                   124556999999999999       899999999999999999


Q ss_pred             CCCCchHHHHHHhcC--CHHHHHHHHccccc-chh-------hh--h------hc-------cCCCc-------------
Q 008977          195 GPDGKTALHAAVYTY--PTEVIKQLFLHEEK-RSL-------TA--V------RD-------KYGWT-------------  236 (547)
Q Consensus       195 ~~~g~t~Lh~A~~~~--~~~~v~~Ll~~~~~-~~~-------~~--~------~d-------~~g~t-------------  236 (547)
                      |..|.||||+|+.+.  ..|+++.|+..... ...       .+  .      .|       -+|.+             
T Consensus       212 d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~  291 (631)
T PHA02792        212 TYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRN  291 (631)
T ss_pred             CCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhh
Confidence            999999999999999  78999988732110 000       00  0      00       01111             


Q ss_pred             -----------------HHhHHHhcC--ChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccc
Q 008977          237 -----------------PLHHAAYSG--RELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA  297 (547)
Q Consensus       237 -----------------pLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  297 (547)
                                       .||.-...+  +.+++++|+++|.+...    .....+++.|+..|+.+++++|+++|++.. 
T Consensus       292 ~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r----~~~~n~~~~Aa~~gn~eIVelLIs~GADIN-  366 (631)
T PHA02792        292 NIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR----FKHINKYFQKFDNRDPKVVEYILKNGNVVV-  366 (631)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc----CCcchHHHHHHHcCCHHHHHHHHHcCCchh-
Confidence                             123233333  57899999999987631    135668999999999999999999999874 


Q ss_pred             cccCCC--CcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHh
Q 008977          298 KVDERG--WNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       298 ~~d~~g--~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                      ..|.+|  .||||.|.........   .+...++..|+++|.+|..|+||||+|+..
T Consensus       367 ~kD~~g~~~TpLh~A~~n~~~~v~---~IlklLIs~GADIN~kD~~G~TPLh~Aa~~  420 (631)
T PHA02792        367 EDDDNIINIMPLFPTLSIHESDVL---SILKLCKPYIDDINKIDKHGRSILYYCIES  420 (631)
T ss_pred             hhcCCCCChhHHHHHHHhccHhHH---HHHHHHHhcCCccccccccCcchHHHHHHc
Confidence            446664  6999998766543211   234556788999999999999999999976

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.7e-26  Score=210.57  Aligned_cols=175  Identities=21%  Similarity=0.182  Sum_probs=107.2

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcC--CHHHHHHHHhhCCC
Q 008977           79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLR--SVDVAKILIVADPH  156 (547)
Q Consensus        79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~  156 (547)
                      ...+.||||.|+..|+.++|+.|++.                   .+..|..|.||||+|+..+  +.+++++|+++|++
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~-------------------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad   78 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF-------------------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD   78 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh-------------------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC
Confidence            34567888888888888888888764                   2335677888888887644  77888888888887


Q ss_pred             CCCCCCCCCCcHHHHHHHC---CCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh--cCCHHHHHHHHcccccchhhhhhc
Q 008977          157 VPYSANRNNETPLYMAAAN---GSVEIVAKILQKCPSPAHEGPDGKTALHAAVY--TYPTEVIKQLFLHEEKRSLTAVRD  231 (547)
Q Consensus       157 ~~~~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~--~~~~~~v~~Ll~~~~~~~~~~~~d  231 (547)
                      ++...+..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||.|+.  .++.+++++|+.++   ..++.+|
T Consensus        79 vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g---adin~~d  155 (209)
T PHA02859         79 VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG---VSFLNKD  155 (209)
T ss_pred             CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC---CCccccc
Confidence            7633345777888877653   46778888888777777777777777776654  23455555555222   2233445


Q ss_pred             cCCCcHHhH-HHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHH
Q 008977          232 KYGWTPLHH-AAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAA  277 (547)
Q Consensus       232 ~~g~tpLh~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~  277 (547)
                      .+|.||||. ++..++.+++++|+++|.+++..+  ..|.||||+|.
T Consensus       156 ~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d--~~g~tpl~la~  200 (209)
T PHA02859        156 FDNNNILYSYILFHSDKKIFDFLTSLGIDINETN--KSGYNCYDLIK  200 (209)
T ss_pred             CCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCC--CCCCCHHHHHh
Confidence            555555553 233444555555555444433221  23444444444

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.8e-25  Score=203.81  Aligned_cols=178  Identities=20%  Similarity=0.128  Sum_probs=150.6

Q ss_pred             cccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCC--CHHHHHHHHHhCCCCCCCC-CCCchHHH
Q 008977          127 TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANG--SVEIVAKILQKCPSPAHEG-PDGKTALH  203 (547)
Q Consensus       127 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~-~~g~t~Lh  203 (547)
                      ..+.+.||||+|+..|+.++++.|++..    ...|..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh   92 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALH   92 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHH
Confidence            3667899999999999999999999752    256889999999999854  8999999999999999986 48999999


Q ss_pred             HHHhc---CCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh--cCChHHHHHHhccCCCcceecCCCCCchHHHH-HH
Q 008977          204 AAVYT---YPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY--SGRELTSKLLLDHDKSAAFIGGKDRNMTALHL-AA  277 (547)
Q Consensus       204 ~A~~~---~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~-A~  277 (547)
                      +|+..   ++.+++++|+++   +..++.+|.+|.||||.|+.  .++.+++++|+++|.+++..+  ..|.||||. |+
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~---gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d--~~g~t~Lh~~a~  167 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDS---GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKD--FDNNNILYSYIL  167 (209)
T ss_pred             HHHHhCccccHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccc--CCCCcHHHHHHH
Confidence            98764   478999999944   45567889999999999876  467999999999998876543  469999996 56


Q ss_pred             HcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhc
Q 008977          278 ASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSL  314 (547)
Q Consensus       278 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  314 (547)
                      ..++.+++++|++.+.+. +.+|..|+||||+|..++
T Consensus       168 ~~~~~~iv~~Ll~~Gadi-~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        168 FHSDKKIFDFLTSLGIDI-NETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             hcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhhh
Confidence            678999999999999876 556899999999998654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=5.1e-25  Score=216.92  Aligned_cols=212  Identities=13%  Similarity=0.024  Sum_probs=174.9

Q ss_pred             hhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHH
Q 008977           61 TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR  140 (547)
Q Consensus        61 ~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~  140 (547)
                      ++.|.+++...+..++..+.+|     +|+..+..|++++|+.++++...          -..+-.++..++|+||+++.
T Consensus        61 ~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~----------~~~~~~~~~~~~~~L~~~~~  125 (437)
T PHA02795         61 VDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDI----------FSIIIKNCNSVQDLLLYYLS  125 (437)
T ss_pred             HHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccch----------hhhhhhccccccHHHHHHHH
Confidence            6777777777888888887777     99999999999999999887321          00011467779999999999


Q ss_pred             --cCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC------CCCchHHHHHHhcCCHH
Q 008977          141 --LRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG------PDGKTALHAAVYTYPTE  212 (547)
Q Consensus       141 --~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~------~~g~t~Lh~A~~~~~~~  212 (547)
                        .|+.+++++|+++|++++.   .++.||+|.|+..|+.+++++|+++|++.....      ..+.+++|.|...++.+
T Consensus       126 n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~e  202 (437)
T PHA02795        126 NAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLE  202 (437)
T ss_pred             hcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHH
Confidence              8999999999999999873   355899999999999999999999997543221      34778899999999999


Q ss_pred             HHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCC--------HHH
Q 008977          213 VIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH--------IMV  284 (547)
Q Consensus       213 ~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~--------~~~  284 (547)
                      +++.|+.+   +...+.+|..|.||||+|+..|+.+++++|+++|++++..+  ..|.||||+|+..|+        .++
T Consensus       203 Ive~LIs~---GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d--~~G~TpLh~Aa~~g~~~~~~~~~~eI  277 (437)
T PHA02795        203 IYKLCIPY---IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVM--SNGYTCLDVAVDRGSVIARRETHLKI  277 (437)
T ss_pred             HHHHHHhC---cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--CCCCCHHHHHHHcCCcccccccHHHH
Confidence            99999944   34567889999999999999999999999999998887654  359999999999884        689


Q ss_pred             HHHHhhcCCCc
Q 008977          285 VDRILSSCDGC  295 (547)
Q Consensus       285 v~~Ll~~~~~~  295 (547)
                      ++.|++++++.
T Consensus       278 velLL~~gadI  288 (437)
T PHA02795        278 LEILLREPLSI  288 (437)
T ss_pred             HHHHHhCCCCC
Confidence            99999888765

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.93  E-value=1.3e-26  Score=237.68  Aligned_cols=315  Identities=20%  Similarity=0.183  Sum_probs=277.0

Q ss_pred             CCHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccccc
Q 008977            1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADA   80 (547)
Q Consensus         1 ~~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~   80 (547)
                      +++.|-.||..|+.|.+..|+.+|.++..+|..|-++|       .+|+-.  ||..+  |+.|+.   ...+.-.+.|.
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~pl-------Imaata--gh~tv--V~~llk---~ha~veaQsdr  822 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPL-------IMAATA--GHITV--VQDLLK---AHADVEAQSDR  822 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhh-------hhhccc--CchHH--HHHHHh---hhhhhhhhccc
Confidence            46778899999999999999999999999999999999       999999  99999  998855   34445556899


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  160 (547)
                      .++|+|-+||..|+.++|++||..+++.+                .++-...|||.+|...|..++++.|+..|.+++..
T Consensus       823 tkdt~lSlacsggr~~vvelLl~~ganke----------------hrnvsDytPlsla~Sggy~~iI~~llS~GseInSr  886 (2131)
T KOG4369|consen  823 TKDTMLSLACSGGRTRVVELLLNAGANKE----------------HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSR  886 (2131)
T ss_pred             ccCceEEEecCCCcchHHHHHHHhhcccc----------------ccchhhcCchhhhcCcchHHHHHHHhhcccccccc
Confidence            99999999999999999999999998743                34667889999999999999999999999998854


Q ss_pred             C-CCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCC-CCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHH
Q 008977          161 A-NRNNETPLYMAAANGSVEIVAKILQKCPSPAH-EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL  238 (547)
Q Consensus       161 ~-~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpL  238 (547)
                      . .+.|.+||.+|...|+.+.++.|++.|.|+|. ...+.+|+|-+|+..|+.+++.+||   .+......+-+.|.|||
T Consensus       887 tgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLL---a~~anvehRaktgltpl  963 (2131)
T KOG4369|consen  887 TGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLL---AAQANVEHRAKTGLTPL  963 (2131)
T ss_pred             cccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHH---HHhhhhhhhcccCCccc
Confidence            3 45789999999999999999999999999987 4456789999999999999999999   55666788899999999


Q ss_pred             hHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCccc
Q 008977          239 HHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQ  318 (547)
Q Consensus       239 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  318 (547)
                      +-++..|..++=++|+..|+|.+.-.......|+|-+++..||...|+.|+...+. ...++.+|+|+|.+|+..+..  
T Consensus       964 me~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~l-- 1040 (2131)
T KOG4369|consen  964 MEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGAL-- 1040 (2131)
T ss_pred             chhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCcc--
Confidence            99999999999999999999988665554567999999999999999999976655 467799999999999988774  


Q ss_pred             ccceeeecccccccccccccccCCCchhHHHHHhhcc
Q 008977          319 SSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRL  355 (547)
Q Consensus       319 ~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~~  355 (547)
                          ....++.+++++.+..|+.-+++++-|.+.+..
T Consensus      1041 ----ss~~il~~~~ad~d~qdnr~~S~~maafRKgh~ 1073 (2131)
T KOG4369|consen 1041 ----SSCPILVSSVADADQQDNRTNSRTMAAFRKGHF 1073 (2131)
T ss_pred             ----ccchHHhhcccChhhhhcccccccHHHHHhchh
Confidence                345678889999999999999999999988753

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.4e-25  Score=218.18  Aligned_cols=227  Identities=12%  Similarity=-0.004  Sum_probs=183.0

Q ss_pred             HHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccc------ccccCCChHHHHHHH
Q 008977           18 REIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLF------QADAKGDSPLHLAAK   91 (547)
Q Consensus        18 ~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~------~~~~~g~t~Lh~Aa~   91 (547)
                      ++++.+|.+++....+|            +|+..  +..++  +++|+.    .+..++      .++.+++|+||+|+.
T Consensus        66 ~~~~~~~~~i~~~~~~~------------~~~~~--~~k~~--~~~l~s----~~~~~~~~~~~~~~~~~~~~~L~~~~~  125 (437)
T PHA02795         66 DYFRIHRDNIDQYIVDR------------LFAYI--TYKDI--ISALVS----KNYMEDIFSIIIKNCNSVQDLLLYYLS  125 (437)
T ss_pred             HHHHHcCcchhhhhhhh------------HHhhc--chHHH--HHHHHh----cccccchhhhhhhccccccHHHHHHHH
Confidence            45666777776665443            56777  77888  888866    555555      678889999999999


Q ss_pred             --cCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC-----CCC
Q 008977           92 --KGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA-----NRN  164 (547)
Q Consensus        92 --~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~-----~~~  164 (547)
                        .|+.++|++|+++|++.                +.  .++.||||.|+..|+.+++++|+++|++.....     +..
T Consensus       126 n~~n~~eiV~~LI~~GADI----------------n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        126 NAYVEIDIVDFMVDHGAVI----------------YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             hcCCCHHHHHHHHHCCCCC----------------CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence              99999999999999983                33  345899999999999999999999997543222     134


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhc
Q 008977          165 NETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYS  244 (547)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~  244 (547)
                      +.+|+|.|+..++.|++++|+++|++++.+|..|.||||+|+..|+.+++++|+++   +..++.+|..|+||||+|+..
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~---GAdIN~~d~~G~TpLh~Aa~~  264 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLEN---GANVNAVMSNGYTCLDVAVDR  264 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHc
Confidence            78999999999999999999999999999999999999999999999999999944   455778899999999999999


Q ss_pred             CC--------hHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcC
Q 008977          245 GR--------ELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSC  292 (547)
Q Consensus       245 g~--------~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  292 (547)
                      |+        .+++++|+++|++.+...     .+++..  ...+.++++.++++.
T Consensus       265 g~~~~~~~~~~eIvelLL~~gadI~~~~-----~~~~~~--~~~n~~~ik~lI~y~  313 (437)
T PHA02795        265 GSVIARRETHLKILEILLREPLSIDCIK-----LAILNN--TIENHDVIKLCIKYF  313 (437)
T ss_pred             CCcccccccHHHHHHHHHhCCCCCCchh-----HHhhhc--ccchHHHHHHHHHHH
Confidence            84        699999999998775432     222221  122678888888764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=6.1e-25  Score=219.56  Aligned_cols=256  Identities=24%  Similarity=0.270  Sum_probs=210.8

Q ss_pred             CCHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccccc
Q 008977            1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADA   80 (547)
Q Consensus         1 ~~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~   80 (547)
                      |+..+..|++.||.+.+..+++..        .+...+       -.+..                    ..+..+..|.
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~--------~~r~~~-------l~~~t--------------------rsds~n~qd~   47 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSK--------KGRSGL-------LFFTT--------------------RSDSHNLQDY   47 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCC--------CCCCCC-------CCCCC--------------------CCccccccCc
Confidence            567899999999999999999762        222222       11111                    2333455678


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  160 (547)
                      +|.|+||.|+.+|+.+++++|+++.+.                ++..+..|.+|||+|+..|+.++++.++.++..++ .
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~----------------ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~n-a  110 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEAL----------------LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILN-A  110 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhh----------------hhhhhccCcceEEehhhcCcchHHHHHHhcccCCC-c
Confidence            999999999999999999999987543                66778899999999999999999999999985555 7


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchh-----hhhhccCCC
Q 008977          161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSL-----TAVRDKYGW  235 (547)
Q Consensus       161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~-----~~~~d~~g~  235 (547)
                      .+..|.||||.|++.|+.+++.+|+++++++...++.+.|+|..|++.|..++++.|++..-....     ...++-.+-
T Consensus       111 ~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~  190 (854)
T KOG0507|consen  111 VNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAI  190 (854)
T ss_pred             ccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCc
Confidence            888999999999999999999999999999999999999999999999999999999843110000     123455677


Q ss_pred             cHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHH
Q 008977          236 TPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMV  312 (547)
Q Consensus       236 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  312 (547)
                      +|||+|+++|+.++++.|++.|.+.++...   .-|+||.|+..|..++|+.|++.+... ..+|.+|+|.|.+-..
T Consensus       191 ~plHlaakngh~~~~~~ll~ag~din~~t~---~gtalheaalcgk~evvr~ll~~gin~-h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  191 YPLHLAAKNGHVECMQALLEAGFDINYTTE---DGTALHEAALCGKAEVVRFLLEIGINT-HIKNQHGQTALDIIID  263 (854)
T ss_pred             CCcchhhhcchHHHHHHHHhcCCCcccccc---cchhhhhHhhcCcchhhhHHHhhcccc-ccccccchHHHHHHHh
Confidence            899999999999999999999999887654   458999999999999999999998775 5669999999987664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1.6e-24  Score=237.31  Aligned_cols=253  Identities=20%  Similarity=0.185  Sum_probs=183.8

Q ss_pred             CHHHHHHHHcCCchHHHHHhhh--hhhhhhcccCCCceeccCCccce-eEeeecCCceecchhhHHHHHhhcCCcccccc
Q 008977            2 DRKLFEAAAKGDIEPFREIARD--ELESIVTDLMNNTVLYGNITASH-LTLQTEEGEIVSVSTKFVEHILDLSPSVLFQA   78 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~--~~~~~~~~~~g~t~L~~~~~~lh-~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~   78 (547)
                      +.+++.|+++||.+.++.++++  +.++|..|..|.|+|       | .|+.+  ++.++  ++.|++    .+.    .
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~L-------h~~A~~~--~~~ei--v~lLl~----~g~----~   78 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSAL-------FVAAIEN--ENLEL--TELLLN----LSC----R   78 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHH-------HHHHHhc--ChHHH--HHHHHh----CCC----C
Confidence            3678999999999999999999  889998998899999       9 88888  88888  888866    333    6


Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC
Q 008977           79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP  158 (547)
Q Consensus        79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~  158 (547)
                      +..|+||||.|+. |+.+.++.++........+....  ..........+..|.||||+|+..|+.+++++|+++|++++
T Consensus        79 ~~~G~T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~--~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~  155 (743)
T TIGR00870        79 GAVGDTLLHAISL-EYVDAVEAILLHLLAAFRKSGPL--ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP  155 (743)
T ss_pred             CCcChHHHHHHHh-ccHHHHHHHHHHHhhcccccCch--hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            7889999999987 44444555544432211100000  00000011234579999999999999999999999999887


Q ss_pred             CCC-------------CCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC---------HHHHHH
Q 008977          159 YSA-------------NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP---------TEVIKQ  216 (547)
Q Consensus       159 ~~~-------------~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~v~~  216 (547)
                      ...             ...|+||||.|+..|+.+++++|+++|++++..|..|+||||+|+..+.         ..+.+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~  235 (743)
T TIGR00870       156 ARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNF  235 (743)
T ss_pred             cCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            321             1358999999999999999999999999999999999999999998862         234444


Q ss_pred             HHcccccchhh----hhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHH
Q 008977          217 LFLHEEKRSLT----AVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAA  278 (547)
Q Consensus       217 Ll~~~~~~~~~----~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  278 (547)
                      ++.........    +..|.+|.||||+|+..|+.+++++|++.+.+.....  .....|.+.+..
T Consensus       236 l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~--a~~~~~~~~~~~  299 (743)
T TIGR00870       236 ALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFV--AWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceee--ccCcchHhHhhh
Confidence            44333332222    5678899999999999999999999998543322111  134556665543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1.7e-24  Score=185.33  Aligned_cols=238  Identities=21%  Similarity=0.219  Sum_probs=192.5

Q ss_pred             ccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCc
Q 008977           31 DLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPR  110 (547)
Q Consensus        31 ~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~  110 (547)
                      +..|.+.+       -.+...  ++.+.  .....   .-+++-+...+..|..++|.|+-+|+.+.+..++.+++.   
T Consensus        59 ~~lge~~~-------~~~~~s--~nsd~--~v~s~---~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~r---  121 (296)
T KOG0502|consen   59 NALGESLL-------TVAVRS--GNSDV--AVQSA---QLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGAR---  121 (296)
T ss_pred             HhcCCccc-------chhhhc--CCcHH--HHHhh---ccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeeccccc---
Confidence            34666666       777777  77666  55543   336666677788899999999999999999999988776   


Q ss_pred             hhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCC
Q 008977          111 DLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS  190 (547)
Q Consensus       111 ~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~  190 (547)
                                   .+..+-.+.+|+.+++.+.+.+++..+.++.   .+..|+.|.|||.+|+..|+.++|++|++.|++
T Consensus       122 -------------gnevs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd  185 (296)
T KOG0502|consen  122 -------------GNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD  185 (296)
T ss_pred             -------------CCccccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCC
Confidence                         3455778899999999999888887776643   337799999999999999999999999999999


Q ss_pred             CCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCc
Q 008977          191 PAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNM  270 (547)
Q Consensus       191 ~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~  270 (547)
                      ++.......++|.+|++.|..+++++|+.   +.-.++..|.+|-|||-+|++.++.++++.|++.|++.....+  .|+
T Consensus       186 p~~lgk~resALsLAt~ggytdiV~lLL~---r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~d--sGy  260 (296)
T KOG0502|consen  186 PDALGKYRESALSLATRGGYTDIVELLLT---REVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDD--SGY  260 (296)
T ss_pred             hhhhhhhhhhhHhHHhcCChHHHHHHHHh---cCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccc--cCC
Confidence            99988889999999999999999999993   3344778899999999999999999999999999988876543  599


Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHH
Q 008977          271 TALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLH  308 (547)
Q Consensus       271 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  308 (547)
                      +++..|+..|+. +|+..+++..... .+|+.-+||+|
T Consensus       261 ~~mdlAValGyr-~Vqqvie~h~lkl-~Q~~~~~~~~~  296 (296)
T KOG0502|consen  261 WIMDLAVALGYR-IVQQVIEKHALKL-CQDSEKRTPLH  296 (296)
T ss_pred             cHHHHHHHhhhH-HHHHHHHHHHHHH-hhcccCCCCCC
Confidence            999999999987 8888887766543 33666666654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=1.3e-23  Score=230.29  Aligned_cols=241  Identities=18%  Similarity=0.085  Sum_probs=179.5

Q ss_pred             CccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHH-HHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHH
Q 008977           42 ITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLH-LAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE  120 (547)
Q Consensus        42 ~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh-~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  120 (547)
                      +.+++.|+..  |+.+.  ++.+++.  ..+.+++..|..|+|||| .|+.+++.+++++|++++.              
T Consensus        18 ~~~~l~A~~~--g~~~~--v~~lL~~--~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~--------------   77 (743)
T TIGR00870        18 EKAFLPAAER--GDLAS--VYRDLEE--PKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC--------------   77 (743)
T ss_pred             HHHHHHHHHc--CCHHH--HHHHhcc--ccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC--------------
Confidence            3444999999  99998  8888651  126677888999999999 8999999999999998754              


Q ss_pred             HHHhcccccCCCCHhHHHHHcC---CHHHHHHHHhhCCCC---------CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC
Q 008977          121 RQMLGMTNEEQNTPLHEAVRLR---SVDVAKILIVADPHV---------PYSANRNNETPLYMAAANGSVEIVAKILQKC  188 (547)
Q Consensus       121 ~~~l~~~~~~g~t~Lh~A~~~g---~~~iv~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  188 (547)
                            .+..|.||||.|+..+   ..++++.+.+.+++.         ....+..|.||||+|+.+|+.++++.|+++|
T Consensus        78 ------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~G  151 (743)
T TIGR00870        78 ------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERG  151 (743)
T ss_pred             ------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCC
Confidence                  3778999999998732   233444444444321         1122357999999999999999999999999


Q ss_pred             CCCCCCC--------------CCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcC---------
Q 008977          189 PSPAHEG--------------PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSG---------  245 (547)
Q Consensus       189 ~~~~~~~--------------~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g---------  245 (547)
                      ++++.++              ..|++|||.|+..++.+++++|++   .+..++.+|..|+||||+|+..+         
T Consensus       152 Adv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~---~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l  228 (743)
T TIGR00870       152 ASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE---DPADILTADSLGNTLLHLLVMENEFKAEYEEL  228 (743)
T ss_pred             CCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc---CCcchhhHhhhhhHHHHHHHhhhhhhHHHHHH
Confidence            9987542              258999999999999999999994   44567888999999999999986         


Q ss_pred             ChHHHHHHhccCCCcce-----ecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHH
Q 008977          246 RELTSKLLLDHDKSAAF-----IGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMV  312 (547)
Q Consensus       246 ~~~~v~~Ll~~~~~~~~-----~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  312 (547)
                      ...+.+.+++.+.....     ...+.+|.||||+|+..|+.++++.|++..... .+.....+.+.+.+..
T Consensus       229 ~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~-kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       229 SCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQ-KKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhc-ceeeccCcchHhHhhh
Confidence            23345556554443211     112446999999999999999999999854332 2224455666666543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=4.5e-23  Score=206.33  Aligned_cols=254  Identities=22%  Similarity=0.200  Sum_probs=207.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR  163 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  163 (547)
                      +=|--|++.|+.+.|..||+...........   .....-.+.+|..|.|+||.|+.+|+.+++++|++..+-+. ..+.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~---~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ld-l~d~   80 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFF---TTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLD-LCDT   80 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCC---CCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhh-hhhc
Confidence            4577899999999999999964431100000   01112267788899999999999999999999999988776 5678


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977          164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY  243 (547)
Q Consensus       164 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~  243 (547)
                      .|.+|||+|+..|+.|+++.++.++..++..+..|.+|||.|++.++.+++.+|+.++.++.   .+|..+.|+|.+|++
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~---i~nns~~t~ldlA~q  157 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF---IRNNSKETVLDLASR  157 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc---ccCcccccHHHHHHH
Confidence            99999999999999999999999999899999999999999999999999999996666655   468999999999999


Q ss_pred             cCChHHHHHHhccCCCccee------cCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcc
Q 008977          244 SGRELTSKLLLDHDKSAAFI------GGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLL  317 (547)
Q Consensus       244 ~g~~~~v~~Ll~~~~~~~~~------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  317 (547)
                      .|+.++++.|+...-.....      ...-.+.+|+|+|+++||.++++.|++.+-+++ ...+.| |+||.|+.+|..+
T Consensus       158 fgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din-~~t~~g-talheaalcgk~e  235 (854)
T KOG0507|consen  158 FGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDIN-YTTEDG-TALHEAALCGKAE  235 (854)
T ss_pred             hhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcc-cccccc-hhhhhHhhcCcch
Confidence            99999999999862221111      111246789999999999999999999998874 435555 9999999999864


Q ss_pred             cccceeeecccccccccccccccCCCchhHHHHHh
Q 008977          318 QSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       318 ~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                            +...+++.|.....+|..|.|+|++....
T Consensus       236 ------vvr~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  236 ------VVRFLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             ------hhhHHHhhccccccccccchHHHHHHHhc
Confidence                  44566777888899999999999987643

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=7.4e-22  Score=217.43  Aligned_cols=178  Identities=17%  Similarity=0.174  Sum_probs=155.5

Q ss_pred             ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977          128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY  207 (547)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~  207 (547)
                      +.++.++||.|+..|+.++++.|++.|.+++ ..|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||.|+.
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            3356789999999999999999999999987 789999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHH
Q 008977          208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDR  287 (547)
Q Consensus       208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  287 (547)
                      .|+.++++.|+.....     .....|.++||.|+..|+.++++.|+++|++++..+  .+|.||||+|+..|+.+++++
T Consensus       601 ~g~~~iv~~L~~~~~~-----~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d--~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        601 AKHHKIFRILYHFASI-----SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSED--HQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             hCCHHHHHHHHhcCcc-----cCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHCCcHHHHHH
Confidence            9999999999843322     124567899999999999999999999999887654  469999999999999999999


Q ss_pred             HhhcCCCccccccCCC-CcHHHHHHHhc
Q 008977          288 ILSSCDGCCAKVDERG-WNFLHFAMVSL  314 (547)
Q Consensus       288 Ll~~~~~~~~~~d~~g-~t~Lh~A~~~~  314 (547)
                      |++++++. +..|.+| .||++++....
T Consensus       674 Ll~~GAdv-~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        674 LIMNGADV-DKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHcCCCC-CCCCCCCCCCHHHHHHHHH
Confidence            99999886 4457777 99999886543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.88  E-value=3.6e-23  Score=177.18  Aligned_cols=240  Identities=21%  Similarity=0.184  Sum_probs=205.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCC
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN  162 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~  162 (547)
                      -..+..+...|-.+.-..|......                  ..+..|..-+-.+.+.|+.+++..+...+++.+...+
T Consensus        32 ~a~~~~~~~m~~t~p~~~l~~~~s~------------------~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~   93 (296)
T KOG0502|consen   32 IAELFEQVEMGTTEPRCALTAEISA------------------LRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETD   93 (296)
T ss_pred             HHHHHHHhhccccchhHHHHHHHHH------------------HHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCC
Confidence            4456666666666555555543221                  3466788888899999999999999998888877888


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHH
Q 008977          163 RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA  242 (547)
Q Consensus       163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~  242 (547)
                      .+|.+.++.++-.|+.+.+..++.++...+..+--+.+|+.+++...+.+.+..+.     ...++..|+.|.|||.+|+
T Consensus        94 p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~-----~n~VN~~De~GfTpLiWAa  168 (296)
T KOG0502|consen   94 PEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLV-----NNKVNACDEFGFTPLIWAA  168 (296)
T ss_pred             chhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHh-----hccccCccccCchHhHHHH
Confidence            89999999999999999999999999999999999999999999999888877665     2347788999999999999


Q ss_pred             hcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccce
Q 008977          243 YSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGL  322 (547)
Q Consensus       243 ~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~  322 (547)
                      ..|+..+|++|++.|+++.....  ...++|.+|++.|..++|++|+...++. +.-|.+|-|||-+|++.++.      
T Consensus       169 a~G~i~vV~fLL~~GAdp~~lgk--~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhv------  239 (296)
T KOG0502|consen  169 AKGHIPVVQFLLNSGADPDALGK--YRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHV------  239 (296)
T ss_pred             hcCchHHHHHHHHcCCChhhhhh--hhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChH------
Confidence            99999999999999999987754  4789999999999999999999999997 55699999999999988874      


Q ss_pred             eeecccccccccccccccCCCchhHHHHHhhc
Q 008977          323 VIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR  354 (547)
Q Consensus       323 ~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~  354 (547)
                      .+.+.++..|++++..|..|++++++|++.|.
T Consensus       240 kcve~Ll~sGAd~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  240 KCVESLLNSGADVTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             HHHHHHHhcCCCcccccccCCcHHHHHHHhhh
Confidence            46677888999999999999999999998854

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.88  E-value=4.1e-23  Score=212.29  Aligned_cols=280  Identities=19%  Similarity=0.154  Sum_probs=238.2

Q ss_pred             ccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHH
Q 008977           43 TASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ  122 (547)
Q Consensus        43 ~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  122 (547)
                      |+|..||.+  |+.+.  ++.|+.    .+..+..+|..|.+||.+|+-.||..+|+.|+++.++..             
T Consensus       759 t~LT~acag--gh~e~--vellv~----rganiehrdkkgf~plImaatagh~tvV~~llk~ha~ve-------------  817 (2131)
T KOG4369|consen  759 TNLTSACAG--GHREE--VELLVV----RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE-------------  817 (2131)
T ss_pred             ccccccccC--ccHHH--HHHHHH----hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhh-------------
Confidence            555999999  99999  998866    688889999999999999999999999999999876531             


Q ss_pred             HhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC--CCCch
Q 008977          123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG--PDGKT  200 (547)
Q Consensus       123 ~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~--~~g~t  200 (547)
                        ...|+.+.|+|-+||..|..+++++||..|++-. .++....|||.+|..-|..+++..|+..|+.++.+.  ..|..
T Consensus       818 --aQsdrtkdt~lSlacsggr~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgis  894 (2131)
T KOG4369|consen  818 --AQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGIS  894 (2131)
T ss_pred             --hhcccccCceEEEecCCCcchHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcc
Confidence              2357889999999999999999999999998876 678888999999999999999999999999888753  46889


Q ss_pred             HHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcC
Q 008977          201 ALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASG  280 (547)
Q Consensus       201 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g  280 (547)
                      ||++|..+|+.+.++.|+  +...++-.....+-+|.|-+|+-.|+.+++.+||.+.+....+..  .|.|||.-++..|
T Consensus       895 PLmlatmngh~~at~~ll--~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRak--tgltplme~AsgG  970 (2131)
T KOG4369|consen  895 PLMLATMNGHQAATLSLL--QPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAK--TGLTPLMEMASGG  970 (2131)
T ss_pred             hhhhhhhccccHHHHHHh--cccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcc--cCCcccchhhcCC
Confidence            999999999999999999  333343334456778999999999999999999998776665543  5999999999999


Q ss_pred             CHHHHHHHhhcCCCcccccc-CCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhccc
Q 008977          281 HIMVVDRILSSCDGCCAKVD-ERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLS  356 (547)
Q Consensus       281 ~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  356 (547)
                      .+|+-+.|+..|+|.+...- ....|+|-+++..|+..      ...+++...+-+..+|++|+|+|-+|+..+.++
T Consensus       971 yvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~k------fv~~lln~~atv~v~NkkG~T~Lwla~~Gg~ls 1041 (2131)
T KOG4369|consen  971 YVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTK------FVPKLLNGDATVRVPNKKGCTVLWLASAGGALS 1041 (2131)
T ss_pred             ccccchhhhhcccccccCCCCCcCCccceeecCCCchh------hhHHhhCCccceecccCCCCcccchhccCCccc
Confidence            99999999999998755433 33558999999999853      335566667888999999999999998876544

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=5.5e-22  Score=218.45  Aligned_cols=179  Identities=20%  Similarity=0.212  Sum_probs=153.9

Q ss_pred             CCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchh
Q 008977           33 MNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDL  112 (547)
Q Consensus        33 ~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~  112 (547)
                      ++.++|       |.|+..  |+.++  ++.|++    .+.+++..|.+|.||||+||..|+.+++++|+++|++     
T Consensus       524 ~~~~~L-------~~Aa~~--g~~~~--l~~Ll~----~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-----  583 (823)
T PLN03192        524 NMASNL-------LTVAST--GNAAL--LEELLK----AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-----  583 (823)
T ss_pred             cchhHH-------HHHHHc--CCHHH--HHHHHH----CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-----
Confidence            455666       999999  99888  888866    6778899999999999999999999999999998876     


Q ss_pred             hhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCC
Q 008977          113 QRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA  192 (547)
Q Consensus       113 ~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~  192 (547)
                                 ++.+|.+|+||||+|+..|+.+++++|++.+....   ...+.+|||.|+..|+.++++.|+++|++++
T Consensus       584 -----------in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin  649 (823)
T PLN03192        584 -----------VHIRDANGNTALWNAISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD  649 (823)
T ss_pred             -----------CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHCCCCCC
Confidence                       56789999999999999999999999998765533   4567799999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCC-CcHHhHHHhcCChH
Q 008977          193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYG-WTPLHHAAYSGREL  248 (547)
Q Consensus       193 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g-~tpLh~A~~~g~~~  248 (547)
                      ..|.+|.||||.|+..|+.+++++|+.++.   .++..|..| .||++++......+
T Consensus       650 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA---dv~~~~~~g~~t~~~l~~~~~~~~  703 (823)
T PLN03192        650 SEDHQGATALQVAMAEDHVDMVRLLIMNGA---DVDKANTDDDFSPTELRELLQKRE  703 (823)
T ss_pred             CCCCCCCCHHHHHHHCCcHHHHHHHHHcCC---CCCCCCCCCCCCHHHHHHHHHHhh
Confidence            999999999999999999999999995444   455667777 89998886654433

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=2.3e-20  Score=171.87  Aligned_cols=187  Identities=24%  Similarity=0.254  Sum_probs=127.5

Q ss_pred             CCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHH
Q 008977           93 GDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMA  172 (547)
Q Consensus        93 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  172 (547)
                      .+++.|+..|..-.....       ......+|+-|.+|+|+||||+..+|+++|+.||+.|..-....|+.|.||++++
T Consensus       237 a~pe~V~~~l~~f~als~-------~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLa  309 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSP-------PLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLA  309 (452)
T ss_pred             CCHHHHHHHHHHHHhcCh-------HHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHH
Confidence            467777666554333222       2234558899999999999999999999999999998877778899999999998


Q ss_pred             HHC-----CCHHHHHHHHHhCCCCCC-CCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCC
Q 008977          173 AAN-----GSVEIVAKILQKCPSPAH-EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR  246 (547)
Q Consensus       173 ~~~-----g~~~iv~~Ll~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~  246 (547)
                      +..     .+.++|..|.+.| ++|. -...|+|+|++|+..|+.++++.|+   ..+.++|.+|.+|.|+|+.|+..|+
T Consensus       310 ALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LL---acgAdVNiQDdDGSTALMCA~EHGh  385 (452)
T KOG0514|consen  310 ALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALL---ACGADVNIQDDDGSTALMCAAEHGH  385 (452)
T ss_pred             HHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHH---HccCCCccccCCccHHHhhhhhhCh
Confidence            853     3456777777655 2333 2335777777777777777777777   4445566677777777777777777


Q ss_pred             hHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhc
Q 008977          247 ELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS  291 (547)
Q Consensus       247 ~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  291 (547)
                      .|++++||... ..+..-.|.+|.|+|.+|-..||.||.-+|..+
T Consensus       386 kEivklLLA~p-~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  386 KEIVKLLLAVP-SCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHHHHHHhccC-cccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            77777777542 222222233477777777777777776666543

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=1.4e-19  Score=160.62  Aligned_cols=134  Identities=16%  Similarity=0.197  Sum_probs=115.4

Q ss_pred             ccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCC----HHHHHHH
Q 008977           75 LFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS----VDVAKIL  150 (547)
Q Consensus        75 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~----~~iv~~L  150 (547)
                      ++.+|..|.||||+|++.|+.++++.|+......          .....++.+|..|.||||+|+..|+    .+++++|
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~----------~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~L   83 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGD----------CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHL   83 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccc----------hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHH
Confidence            5567889999999999999999999997643100          0112367889999999999999999    5899999


Q ss_pred             HhhCCCCCCCCC-CCCCcHHHHHHHCCCHHHHHHHHH-hCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHc
Q 008977          151 IVADPHVPYSAN-RNNETPLYMAAANGSVEIVAKILQ-KCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFL  219 (547)
Q Consensus       151 l~~~~~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  219 (547)
                      ++.|++++ .++ ..|.||||+|+..++.+++++|++ .+++++..+.+|.||||+|+..++.++++.|+.
T Consensus        84 l~~gadin-~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741         84 IELGADIN-AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             HHcCCCCC-CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999987 555 489999999999999999999997 589999999999999999999999999999984

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=1.2e-20  Score=182.98  Aligned_cols=228  Identities=26%  Similarity=0.304  Sum_probs=146.7

Q ss_pred             HHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCC
Q 008977            4 KLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGD   83 (547)
Q Consensus         4 ~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~   83 (547)
                      .++.|+..||.+-++.|+..|..++..+.+|.|+|       |-+|..  .+.+|  ++++++    .+..+++.|..|+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTal-------hq~~id--~~~e~--v~~l~e----~ga~Vn~~d~e~w  107 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTAL-------HQACID--DNLEM--VKFLVE----NGANVNAQDNEGW  107 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhH-------HHHHhc--ccHHH--HHHHHH----hcCCccccccccC
Confidence            46678888888888888888877777777888888       888888  88888  888877    6778888888888


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR  163 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  163 (547)
                      ||||.|+.+||.+++++|+.+|++                +...|.+|..|+..+..--..+++..-...          
T Consensus       108 tPlhaaascg~~~i~~~li~~gA~----------------~~avNsdg~~P~dl~e~ea~~~~l~~~~~r----------  161 (527)
T KOG0505|consen  108 TPLHAAASCGYLNIVEYLIQHGAN----------------LLAVNSDGNMPYDLAEDEATLDVLETEMAR----------  161 (527)
T ss_pred             CcchhhcccccHHHHHHHHHhhhh----------------hhhccCCCCCccccccCcchhHHHHHHHHH----------
Confidence            888888888888888888888776                334566666666655443333333332221          


Q ss_pred             CCCcHHHHHHHCCCHH---HHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhH
Q 008977          164 NNETPLYMAAANGSVE---IVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHH  240 (547)
Q Consensus       164 ~g~tpL~~A~~~g~~~---iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~  240 (547)
                      .|.+ +-.+-..-...   =++..+..|...+..+..|.|.||.|..+|..++.++|++++..   ++.+|.+||||||.
T Consensus       162 ~gi~-iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~---~~~~D~dgWtPlHA  237 (527)
T KOG0505|consen  162 QGID-IEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS---VNIKDYDGWTPLHA  237 (527)
T ss_pred             hccc-HHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC---cccccccCCCcccH
Confidence            1111 11111111111   12223335666666655677777777777777777777643332   44567777777777


Q ss_pred             HHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHH
Q 008977          241 AAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAA  278 (547)
Q Consensus       241 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  278 (547)
                      |+.-|..+++++|+++|++.+....  .|.||+.+|..
T Consensus       238 AA~Wg~~~~~elL~~~ga~~d~~t~--~g~~p~dv~de  273 (527)
T KOG0505|consen  238 AAHWGQEDACELLVEHGADMDAKTK--MGETPLDVADE  273 (527)
T ss_pred             HHHhhhHhHHHHHHHhhcccchhhh--cCCCCccchhh
Confidence            7777777777777777766655443  36666666543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=2e-19  Score=170.91  Aligned_cols=157  Identities=17%  Similarity=0.135  Sum_probs=126.4

Q ss_pred             ccccccCCCh-HHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhccc----ccCCCCHhHHHHHcCCHHHHHH
Q 008977           75 LFQADAKGDS-PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMT----NEEQNTPLHEAVRLRSVDVAKI  149 (547)
Q Consensus        75 ~~~~~~~g~t-~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~----~~~g~t~Lh~A~~~g~~~iv~~  149 (547)
                      +..+|..|.| +||.|++.|+.+++++|+++|++                ++.+    +..|.||||+|+..|+.+++++
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd----------------iN~~~~~sd~~g~TpLh~Aa~~~~~eivkl   88 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGAD----------------PEAPFPLSENSKTNPLIYAIDCDNDDAAKL   88 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC----------------ccccCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            3456677765 56667777899999999999887                3333    4689999999999999999999


Q ss_pred             HHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhh
Q 008977          150 LIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAV  229 (547)
Q Consensus       150 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~  229 (547)
                      |+++|++++...+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++..+.  +      ..
T Consensus        89 LL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~------~~  160 (300)
T PHA02884         89 LIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--D------NE  160 (300)
T ss_pred             HHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--C------Cc
Confidence            999999988445667999999999999999999999999999999999999999999988888775554  1      12


Q ss_pred             hccCCCcHHhHHHhcCChHHHHHHhccCC
Q 008977          230 RDKYGWTPLHHAAYSGRELTSKLLLDHDK  258 (547)
Q Consensus       230 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~  258 (547)
                      .+..+.+|++++   ++.++++.|+.++.
T Consensus       161 ~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        161 ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            366677888865   36788888887764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.82  E-value=5.6e-20  Score=162.32  Aligned_cols=130  Identities=12%  Similarity=0.112  Sum_probs=84.3

Q ss_pred             cccccccCCChHHHHHHHcCCH----HHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHH---
Q 008977           74 VLFQADAKGDSPLHLAAKKGDA----AIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDV---  146 (547)
Q Consensus        74 ~~~~~~~~g~t~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~i---  146 (547)
                      +.++.+.++.++||.||+.|+.    +++++|++.+..                ++.+|..|.||||+|+..|+.+.   
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~----------------~~~~d~~g~t~Lh~Aa~~g~~~~~~~   75 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL----------------LHRYDHHGRQCTHMVAWYDRANAVMK   75 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh----------------hhccCCCCCcHHHHHHHhCccCHHHH
Confidence            3444555666777777777776    344445544433                44556677777777777666443   


Q ss_pred             HHHHHhhCCCCCCCCC-CCCCcHHHHHHHCCCHHHHHHHHH-hCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcc
Q 008977          147 AKILIVADPHVPYSAN-RNNETPLYMAAANGSVEIVAKILQ-KCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH  220 (547)
Q Consensus       147 v~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  220 (547)
                      +++|++.|++++ .++ ..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..++.+++++|+.+
T Consensus        76 i~~Ll~~Gadin-~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  150 (166)
T PHA02743         76 IELLVNMGADIN-ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN  150 (166)
T ss_pred             HHHHHHcCCCCC-CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            667777777665 344 467777777777777777777774 5777777777777777777777777777777743

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=2.1e-19  Score=165.59  Aligned_cols=162  Identities=27%  Similarity=0.297  Sum_probs=132.2

Q ss_pred             hhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHc-----CCHHHHH
Q 008977           25 LESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKK-----GDAAIVK   99 (547)
Q Consensus        25 ~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~-----g~~~~v~   99 (547)
                      .-+|..|.+|||.|       ||++.+  ++.++  |+.|   ++.+..+++++|.-|+||+++|+..     .+.++|.
T Consensus       259 yvVNlaDsNGNTAL-------HYsVSH--aNF~V--V~~L---LDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~  324 (452)
T KOG0514|consen  259 YVVNLADSNGNTAL-------HYAVSH--ANFDV--VSIL---LDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVE  324 (452)
T ss_pred             HHhhhhcCCCCeee-------eeeecc--cchHH--HHHH---hccCcccccccccccccHHHHHHHHhhcchhhHHHHH
Confidence            34567788899999       999999  88888  8888   6678888889999999999988863     4677888


Q ss_pred             HHHHHhhcCCchhhhhhhhHHHHHhccc-ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCH
Q 008977          100 FLIKFAKKQPRDLQRGVKSAERQMLGMT-NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSV  178 (547)
Q Consensus       100 ~Ll~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  178 (547)
                      .|.+.|.                 +|.+ ...|+|+|++|+..|+.++++.||..|++++ .+|.+|.|+|+.|+..|+.
T Consensus       325 ~LF~mgn-----------------VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA~EHGhk  386 (452)
T KOG0514|consen  325 RLFKMGD-----------------VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCAAEHGHK  386 (452)
T ss_pred             HHHhccC-----------------cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhhhhhChH
Confidence            8887653                 2332 3568888888888888888888888888887 7888888888888888888


Q ss_pred             HHHHHHHHhC-CCCCCCCCCCchHHHHHHhcCCHHHHHHHH
Q 008977          179 EIVAKILQKC-PSPAHEGPDGKTALHAAVYTYPTEVIKQLF  218 (547)
Q Consensus       179 ~iv~~Ll~~~-~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  218 (547)
                      |++++||... ++....|.+|.|+|.+|...|+.|+..+|.
T Consensus       387 EivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  387 EIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLY  427 (452)
T ss_pred             HHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHH
Confidence            8888888764 677778888888888888888888887776

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.81  E-value=2.2e-18  Score=175.36  Aligned_cols=199  Identities=24%  Similarity=0.310  Sum_probs=157.8

Q ss_pred             ccceeEeeecCCceecchhhHHHHHhhc-----CCccccccccCCChHHHHHHH---cCCHHHHHHHHHHhhcCCchhhh
Q 008977           43 TASHLTLQTEEGEIVSVSTKFVEHILDL-----SPSVLFQADAKGDSPLHLAAK---KGDAAIVKFLIKFAKKQPRDLQR  114 (547)
Q Consensus        43 ~~lh~A~~~~~g~~~~~~~~~L~~~~~~-----~~~~~~~~~~~g~t~Lh~Aa~---~g~~~~v~~Ll~~~~~~~~~~~~  114 (547)
                      .++..|...  +..+.  .+.+....+.     ....++.+..-|+|+||.|..   .++.++++.|++.-+...+++- 
T Consensus       103 ~~~~~~~~~--~~l~~--l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~-  177 (782)
T KOG3676|consen  103 DALFIADSE--GALSD--LDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIY-  177 (782)
T ss_pred             hhhhhcccc--ccHHH--HhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhh-
Confidence            445667666  66555  5555443211     124566778889999999997   4567999999997654322211 


Q ss_pred             hhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC--------CC--------------CCCCcHHHHH
Q 008977          115 GVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS--------AN--------------RNNETPLYMA  172 (547)
Q Consensus       115 ~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~--------~~--------------~~g~tpL~~A  172 (547)
                                ......|+||||.|+.+.+.++|++|++.|++++..        .|              ..|+.||.+|
T Consensus       178 ----------~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfA  247 (782)
T KOG3676|consen  178 ----------TSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFA  247 (782)
T ss_pred             ----------hhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHH
Confidence                      122567999999999999999999999999987631        11              1478999999


Q ss_pred             HHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHH
Q 008977          173 AANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL  252 (547)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~  252 (547)
                      |.-++.|++++|+++|+|++..|..|+|.||..+.....++..++++++.+ .+...+|+.|.|||.+|++.|..++.+.
T Consensus       248 AC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk~emf~~  326 (782)
T KOG3676|consen  248 ACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGKKEMFQH  326 (782)
T ss_pred             HHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHHHHHhhhHHHHHH
Confidence            999999999999999999999999999999999999888999999977776 5567788999999999999999999999


Q ss_pred             HhccC
Q 008977          253 LLDHD  257 (547)
Q Consensus       253 Ll~~~  257 (547)
                      ++++.
T Consensus       327 ile~~  331 (782)
T KOG3676|consen  327 ILERR  331 (782)
T ss_pred             HHHhh
Confidence            99874

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=5.8e-20  Score=178.20  Aligned_cols=207  Identities=23%  Similarity=0.211  Sum_probs=152.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCC
Q 008977           85 PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRN  164 (547)
Q Consensus        85 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  164 (547)
                      .+.-|+..|..+=|+.|+..+++                .+..|.+|.|+||.+|.-.+.+||++|+++|++++ ..|..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~----------------~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d~e  105 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGAS----------------PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQDNE  105 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCC----------------ccccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccccc
Confidence            46678889999999999998866                35679999999999999999999999999999998 88999


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHc-----------------------cc
Q 008977          165 NETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFL-----------------------HE  221 (547)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~-----------------------~~  221 (547)
                      ++||||.|+..|+..++++|+++|++....+.+|..|+..+......+++..-..                       --
T Consensus       106 ~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l  185 (527)
T KOG0505|consen  106 GWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWL  185 (527)
T ss_pred             cCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999999998888888777665443322222211110                       00


Q ss_pred             ccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccC
Q 008977          222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDE  301 (547)
Q Consensus       222 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~  301 (547)
                      ..+.....++..|.|.||.|+.+|..++.++|+++|.++...+.  +|+||||.|+..|+.++.+.|++++.+. +....
T Consensus       186 ~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~--dgWtPlHAAA~Wg~~~~~elL~~~ga~~-d~~t~  262 (527)
T KOG0505|consen  186 NAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDY--DGWTPLHAAAHWGQEDACELLVEHGADM-DAKTK  262 (527)
T ss_pred             hccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccc--cCCCcccHHHHhhhHhHHHHHHHhhccc-chhhh
Confidence            11222334444577777777777777777777777766655543  3777777777777777777777766665 33356


Q ss_pred             CCCcHHHHHH
Q 008977          302 RGWNFLHFAM  311 (547)
Q Consensus       302 ~g~t~Lh~A~  311 (547)
                      .|.||+.+|.
T Consensus       263 ~g~~p~dv~d  272 (527)
T KOG0505|consen  263 MGETPLDVAD  272 (527)
T ss_pred             cCCCCccchh
Confidence            6677766654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=3.5e-19  Score=157.26  Aligned_cols=137  Identities=13%  Similarity=0.029  Sum_probs=118.3

Q ss_pred             cccccCCCCHhHHHHHcCCH----HHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHH---HHHHHHhCCCCCCCC-C
Q 008977          125 GMTNEEQNTPLHEAVRLRSV----DVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI---VAKILQKCPSPAHEG-P  196 (547)
Q Consensus       125 ~~~~~~g~t~Lh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~i---v~~Ll~~~~~~~~~~-~  196 (547)
                      +..+.++.++||.||+.|+.    +++++|++.++.++ ..|..|+||||+|+..|+.+.   +++|+++|++++.++ .
T Consensus        14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~-~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~   92 (166)
T PHA02743         14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLH-RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELG   92 (166)
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhh-ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCC
Confidence            34567888999999999998    56667888888765 778899999999999988654   899999999999988 5


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceec
Q 008977          197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIG  264 (547)
Q Consensus       197 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~  264 (547)
                      .|.||||+|+..++.+++++|+  ...+...+.+|..|.||||+|+..++.+++++|+++|++.+...
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll--~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~  158 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLC--RQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPL  158 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHH--hccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Confidence            8999999999999999999998  22345567789999999999999999999999999998776543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.9e-19  Score=157.53  Aligned_cols=135  Identities=15%  Similarity=0.121  Sum_probs=107.3

Q ss_pred             ccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCH---HHHHHHH
Q 008977           75 LFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSV---DVAKILI  151 (547)
Q Consensus        75 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~---~iv~~Ll  151 (547)
                      .+.+|.+|.||||+|++.|+  +++++...+...         ...+..++..|..|.||||+|+..|+.   +++++|+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~---------~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll   78 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGG--VTDLLAFKNAIS---------DENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLM   78 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhc---------chhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHH
Confidence            45678899999999999998  344444332211         112334556789999999999999987   4688999


Q ss_pred             hhCCCCCCCCC-CCCCcHHHHHHHCCCHHHHHHHHHh-CCCCCCCCCCCchHHHHHHhcCCHHHHHHHHccc
Q 008977          152 VADPHVPYSAN-RNNETPLYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE  221 (547)
Q Consensus       152 ~~~~~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~  221 (547)
                      +.|++++ .++ ..|.||||+|+..|+.+++++|+++ |++++..+..|.||||+|+..++.++++.|+..+
T Consensus        79 ~~gadin-~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         79 EWGADIN-GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             HcCCCcc-ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999887 455 6899999999999999999999974 8898888889999999999999999998888444

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=3.7e-19  Score=157.91  Aligned_cols=134  Identities=16%  Similarity=0.166  Sum_probs=106.0

Q ss_pred             HHhcccccCCCCHhHHHHHcCCHHHHHHHHhh------CCCCCCCCCCCCCcHHHHHHHCCC----HHHHHHHHHhCCCC
Q 008977          122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA------DPHVPYSANRNNETPLYMAAANGS----VEIVAKILQKCPSP  191 (547)
Q Consensus       122 ~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~------~~~~~~~~~~~g~tpL~~A~~~g~----~~iv~~Ll~~~~~~  191 (547)
                      .+++.+|..|.||||+|++.|+.++++.|+..      +++++ .+|..|.||||+|+..|+    .+++++|++.|+++
T Consensus        12 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in-~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi   90 (169)
T PHA02741         12 EMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALN-ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI   90 (169)
T ss_pred             HHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhh-ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence            34566788999999999999999999988642      34544 678889999999999988    58888999999888


Q ss_pred             CCCCC-CCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCC
Q 008977          192 AHEGP-DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDK  258 (547)
Q Consensus       192 ~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~  258 (547)
                      +.++. .|.||||+|+..++.+++++|+.  ..+...+..|.+|+||||+|+..++.++++.|++.+.
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~--~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCC--QPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            88774 78888888888888888888872  2234456667788888888888888888888887653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.3e-18  Score=163.72  Aligned_cols=157  Identities=10%  Similarity=0.060  Sum_probs=130.2

Q ss_pred             hcccccCCCC-HhHHHHHcCCHHHHHHHHhhCCCCCCC---CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCC-CCCC
Q 008977          124 LGMTNEEQNT-PLHEAVRLRSVDVAKILIVADPHVPYS---ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE-GPDG  198 (547)
Q Consensus       124 l~~~~~~g~t-~Lh~A~~~g~~~iv~~Ll~~~~~~~~~---~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~-~~~g  198 (547)
                      +..+|+.|.| +||.|+..|+.+++++|+++|++++..   .+..|.||||+|+..|+.+++++|+++|++++.. +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            4456777766 567777889999999999999998743   2568999999999999999999999999999985 5689


Q ss_pred             chHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHH
Q 008977          199 KTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAA  278 (547)
Q Consensus       199 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  278 (547)
                      .||||.|+..++.++++.|+.+   +..++.+|..|.||||+|+..++.+++..+...+       .+..+.+|.+++  
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~---GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--  172 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSY---GADINIQTNDMVTPIELALMICNNFLAFMICDNE-------ISNFYKHPKKIL--  172 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc-------ccccccChhhhh--
Confidence            9999999999999999999944   4456678999999999999999998886665432       123577888875  


Q ss_pred             cCCHHHHHHHhhcCC
Q 008977          279 SGHIMVVDRILSSCD  293 (547)
Q Consensus       279 ~g~~~~v~~Ll~~~~  293 (547)
                       ++.|+++.|+.+..
T Consensus       173 -~n~ei~~~Lish~v  186 (300)
T PHA02884        173 -INFDILKILVSHFI  186 (300)
T ss_pred             -ccHHHHHHHHHHHH
Confidence             47899999988754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=7.1e-19  Score=153.95  Aligned_cols=135  Identities=17%  Similarity=0.113  Sum_probs=106.3

Q ss_pred             HHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCC--C----CCCCCCCCCCcHHHHHHHCCCH---HHHHHHHHhCCCCC
Q 008977          122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADP--H----VPYSANRNNETPLYMAAANGSV---EIVAKILQKCPSPA  192 (547)
Q Consensus       122 ~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~--~----~~~~~~~~g~tpL~~A~~~g~~---~iv~~Ll~~~~~~~  192 (547)
                      ...+.+|..|.||||+|++.|+.  ++++...+.  +    .....|..|.||||+|+..|+.   +++++|++.|++++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            34667789999999999999984  333332221  1    1224588999999999999986   46889999999999


Q ss_pred             CCC-CCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCc
Q 008977          193 HEG-PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSA  260 (547)
Q Consensus       193 ~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  260 (547)
                      .++ ..|+||||+|+..++.+++++|+.  ..+...+.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~--~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCN--QPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHh--CCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            887 489999999999999999999983  223456677888999999999989999999998888665

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=8e-18  Score=139.19  Aligned_cols=144  Identities=19%  Similarity=0.230  Sum_probs=123.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCC
Q 008977           85 PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRN  164 (547)
Q Consensus        85 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  164 (547)
                      -+.+|+..+....|+.||+..++.               +|.+|.+|.||||.|+.+|+.+|++.|+..|++.. .+...
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~---------------vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~  129 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANH---------------VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNE  129 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccc---------------ccccccccccHHHHHHhcCchHHHHHHHHccCCcc-ccccc
Confidence            567899999999999999976653               78999999999999999999999999999999987 77889


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHH-HHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977          165 NETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTE-VIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY  243 (547)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~-~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~  243 (547)
                      |+||||.||..++.+++-.|+++|+|++.......||||.|+...+.. .+++|+  ......+...+..+.||+.+|-+
T Consensus       130 GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll--~dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  130 GWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLL--HDRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             CccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHh--hccccChhhhcCccchHHHHHHH
Confidence            999999999999999999999999999999989999999999876654 455555  33334455667778888888877


Q ss_pred             cCC
Q 008977          244 SGR  246 (547)
Q Consensus       244 ~g~  246 (547)
                      .+-
T Consensus       208 T~~  210 (228)
T KOG0512|consen  208 TSM  210 (228)
T ss_pred             hhh
Confidence            654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.70  E-value=3.6e-16  Score=129.46  Aligned_cols=144  Identities=25%  Similarity=0.230  Sum_probs=115.6

Q ss_pred             HhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHH
Q 008977          134 PLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEV  213 (547)
Q Consensus       134 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  213 (547)
                      .+-.|+..+....|+.|++..++..+.+|.+|.||||-|+.+|+.+|++.|+..|++++.+...|.||||-||.-++.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            45678889999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcccccchhhhhhccCCCcHHhHHHhcCChH-HHHHHhc-cCCCcceecCCCCCchHHHHHHHcCCH
Q 008977          214 IKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL-TSKLLLD-HDKSAAFIGGKDRNMTALHLAAASGHI  282 (547)
Q Consensus       214 v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~-~v~~Ll~-~~~~~~~~~~~~~g~tpL~~A~~~g~~  282 (547)
                      +..|++++   ..++.......||||+|+...+.. .+.+|+. ++.++..  .+..+.||+.+|-+.+-.
T Consensus       146 a~~LLqhg---aDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~--~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  146 AGRLLQHG---ADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGL--KNNLEETAFDIARRTSMS  211 (228)
T ss_pred             HHHHHhcc---CcccccccccchhhHHhhcccchHHHHHHHhhccccChhh--hcCccchHHHHHHHhhhh
Confidence            99999544   446777788889999999876644 4444443 3323322  233578899888776543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=2.3e-17  Score=147.38  Aligned_cols=117  Identities=31%  Similarity=0.372  Sum_probs=54.9

Q ss_pred             CccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHH
Q 008977           72 PSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILI  151 (547)
Q Consensus        72 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll  151 (547)
                      ..+++.-|..|.+|||+||+.||..+|+.|+..|+.                +|..|....||||+|+..||-++|+.|+
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgar----------------vn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR----------------VNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhcccc----------------cccccCCCCcchhhhhhcccHHHHHHHH
Confidence            333444444444444444444444444444444443                3333444444444444444444444444


Q ss_pred             hhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977          152 VADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA  205 (547)
Q Consensus       152 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A  205 (547)
                      ++.++++ ..|..|.|||||||..|.-.+.+-|+..|+.++..+++|.|||..|
T Consensus        88 ~~kadvn-avnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   88 SRKADVN-AVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHhcccc-hhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            4444443 4444444444444444444444444444444444444444444433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.68  E-value=4.8e-17  Score=145.36  Aligned_cols=134  Identities=26%  Similarity=0.360  Sum_probs=114.2

Q ss_pred             hcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHH
Q 008977          124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALH  203 (547)
Q Consensus       124 l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh  203 (547)
                      +|.-|..|.+|||+|++.|+..+++.|+.+|+.++ ..|....||||+|+..|+.++|+.|+++.+|+|..+..|.||||
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rgarvn-~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplh  105 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVN-STNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLH  105 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhcccccc-cccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchh
Confidence            67789999999999999999999999999999998 77888899999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcc
Q 008977          204 AAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAA  261 (547)
Q Consensus       204 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  261 (547)
                      |||.-|...+.+-|+   ..+..++..+++|.|||..|--.-...+.+.--++|.+++
T Consensus       106 yacfwgydqiaedli---~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  106 YACFWGYDQIAEDLI---SCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             hhhhhcHHHHHHHHH---hccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            999999999999999   4556677789999999987754333223333333454444

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.66  E-value=1.8e-15  Score=127.32  Aligned_cols=124  Identities=31%  Similarity=0.536  Sum_probs=96.5

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977           78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV  157 (547)
Q Consensus        78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  157 (547)
                      +|.+|.||||+|++.|+.+++++|++.+..                .+..+..|.||||.|+..++.+++++|++.++..
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~----------------~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~   66 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD----------------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV   66 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC----------------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            456788888888888888888888887654                2345777888888888888888888888887655


Q ss_pred             CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHH
Q 008977          158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLF  218 (547)
Q Consensus       158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  218 (547)
                      . ..+..+.||+|.|+..++.+++++|++++.+.+..+..+.||+++|...++.+++++|+
T Consensus        67 ~-~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          67 N-ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             c-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            4 55677788888888888888888888888777777777888888888887777777653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=8.2e-16  Score=120.97  Aligned_cols=89  Identities=33%  Similarity=0.502  Sum_probs=74.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCC
Q 008977           86 LHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNN  165 (547)
Q Consensus        86 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g  165 (547)
                      ||+||+.|+.+++++|++.+.+                +   +. |+||||+|+..|+.+++++|++.|++++ ..|..|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~----------------~---~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g   59 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD----------------I---NL-GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNG   59 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST----------------T---TS-SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTS
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC----------------C---CC-CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCC
Confidence            7899999999999999997654                1   22 8889999999999999999999998886 677889


Q ss_pred             CcHHHHHHHCCCHHHHHHHHHhCCCCCCCC
Q 008977          166 ETPLYMAAANGSVEIVAKILQKCPSPAHEG  195 (547)
Q Consensus       166 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~  195 (547)
                      .||||+|+..|+.+++++|+++|++++.+|
T Consensus        60 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   60 NTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             SBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            999999999999999999999998887654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.64  E-value=1.4e-15  Score=155.22  Aligned_cols=198  Identities=22%  Similarity=0.212  Sum_probs=159.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHc---CCHHHHHHHHhhCCCCCCC
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL---RSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~  160 (547)
                      .++..|...|..+....|++.+.....       .....-++.+...|.|.||.|..+   ++.++++.|++..|++.+.
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~-------r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind  175 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKY-------RLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLIND  175 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhh-------hhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhh
Confidence            678888888888888888776532100       001122455667899999999974   5568999999987765432


Q ss_pred             ----CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCC---------C--------------CCCchHHHHHHhcCCHHH
Q 008977          161 ----ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE---------G--------------PDGKTALHAAVYTYPTEV  213 (547)
Q Consensus       161 ----~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~---------~--------------~~g~t~Lh~A~~~~~~~~  213 (547)
                          ....|+||||+|+.+.+.++|++|++.|+|++.+         |              ..|+.||..|+..++.|+
T Consensus       176 ~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~ei  255 (782)
T KOG3676|consen  176 IYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEI  255 (782)
T ss_pred             hhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHH
Confidence                3457999999999999999999999999998641         1              137889999999999999


Q ss_pred             HHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhc
Q 008977          214 IKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS  291 (547)
Q Consensus       214 v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  291 (547)
                      +++|++   .+.+++.+|..|+|.||..+..-..++.+.++++|+.......+..|.|||-+|++.|+.++.+.+++.
T Consensus       256 vrlLl~---~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  256 VRLLLA---HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHh---cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999994   556688899999999999999999999999999999833333445699999999999999999999997

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.62  E-value=9.9e-15  Score=122.71  Aligned_cols=123  Identities=37%  Similarity=0.494  Sum_probs=89.6

Q ss_pred             cccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHH
Q 008977          127 TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV  206 (547)
Q Consensus       127 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~  206 (547)
                      +|..|.||||.|+..|+.+++++|++.++... ..+..|.+|+|.|+..++.+++++|++.+++++..+..|.+|+|.|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~-~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            35678888888888888888888888877653 66778888888888888888888888888776666777777777777


Q ss_pred             hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHH
Q 008977          207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL  253 (547)
Q Consensus       207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  253 (547)
                      ..++.+++++|+..+   ...+..+..|.||++.|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHG---ADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcC---CCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            777777777777322   22344456666666666666666666655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.56  E-value=2.3e-14  Score=112.63  Aligned_cols=82  Identities=30%  Similarity=0.411  Sum_probs=67.9

Q ss_pred             hHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHH
Q 008977          135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVI  214 (547)
Q Consensus       135 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v  214 (547)
                      ||+|++.|+.+++++|++.++++..     |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.+++.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            6888889999999999988777653     78899999998888999999988888888888888888888888888888


Q ss_pred             HHHHccc
Q 008977          215 KQLFLHE  221 (547)
Q Consensus       215 ~~Ll~~~  221 (547)
                      ++|++++
T Consensus        76 ~~Ll~~g   82 (89)
T PF12796_consen   76 KLLLEHG   82 (89)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            8888443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.50  E-value=2.1e-13  Score=100.87  Aligned_cols=105  Identities=23%  Similarity=0.307  Sum_probs=91.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCC
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN  162 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~  162 (547)
                      +--+.+++++|..+-|+..+..+.+                ++. -..|++|||+|+.+|+.+++++|+..|++++ .+|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~n----------------Vn~-~~ggR~plhyAAD~GQl~ilefli~iGA~i~-~kD   64 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLN----------------VNE-IYGGRTPLHYAADYGQLSILEFLISIGANIQ-DKD   64 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHcccc----------------HHH-HhCCcccchHhhhcchHHHHHHHHHhccccC-Ccc
Confidence            3457889999999999998887643                221 2378999999999999999999999999997 889


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977          163 RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA  205 (547)
Q Consensus       163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A  205 (547)
                      +.|.|||-.|+..|+.++|++|+++|++.....++|.+.+..+
T Consensus        65 KygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   65 KYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             ccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999999999999999999999999999998776554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.41  E-value=1.8e-12  Score=121.40  Aligned_cols=129  Identities=35%  Similarity=0.472  Sum_probs=103.5

Q ss_pred             cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCC-----HHHHH
Q 008977           74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS-----VDVAK  148 (547)
Q Consensus        74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~-----~~iv~  148 (547)
                      .....+..+.+++|.++..+..+++++++..+.+                ++.++..|.||||.|+..|+     .++++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~  128 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGAD----------------VNAKDADGDTPLHLAALNGNPPEGNIEVAK  128 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCC----------------cccccCCCCcHHHHHHhcCCcccchHHHHH
Confidence            3345566678888888888888888888887766                45678888888888888888     88888


Q ss_pred             HHHhhCC--CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHH
Q 008977          149 ILIVADP--HVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLF  218 (547)
Q Consensus       149 ~Ll~~~~--~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  218 (547)
                      .|++.|+  +.....|..|.||||+|+..|+.++++.|++.|++++..+..|.|+++.|+..++.++++.++
T Consensus       129 ~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~  200 (235)
T COG0666         129 LLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLL  200 (235)
T ss_pred             HHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHH
Confidence            8888888  566577888888888888888888888888888888887777888888888888877777777

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.37  E-value=1.3e-12  Score=96.71  Aligned_cols=91  Identities=20%  Similarity=0.246  Sum_probs=82.1

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK   81 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~   81 (547)
                      |..+.+++++|+++.++.....|.++|.+- .|.+||       |+|+..  |+.++  +++++.    .+++++.+|+.
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~pl-------hyAAD~--GQl~i--lefli~----iGA~i~~kDKy   66 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPL-------HYAADY--GQLSI--LEFLIS----IGANIQDKDKY   66 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccc-------hHhhhc--chHHH--HHHHHH----hccccCCcccc
Confidence            567889999999999999999998887665 667777       999999  99999  999977    58889999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQ  108 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~  108 (547)
                      |-|||..|+..||.++|++||++|++.
T Consensus        67 gITPLLsAvwEGH~~cVklLL~~GAdr   93 (117)
T KOG4214|consen   67 GITPLLSAVWEGHRDCVKLLLQNGADR   93 (117)
T ss_pred             CCcHHHHHHHHhhHHHHHHHHHcCccc
Confidence            999999999999999999999999873

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.35  E-value=3.6e-11  Score=112.56  Aligned_cols=131  Identities=31%  Similarity=0.365  Sum_probs=105.6

Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC-----HHHHHHHHcccccchhhhhhccCC
Q 008977          160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP-----TEVIKQLFLHEEKRSLTAVRDKYG  234 (547)
Q Consensus       160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~-----~~~v~~Ll~~~~~~~~~~~~d~~g  234 (547)
                      ..+..+.++++.++..+..+++++++..+.+++..+..|.||||+|+..++     .++++.|+..+......+.+|..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            455667888888888888888888888888888888888888888888888     888888884333214566678889


Q ss_pred             CcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcC
Q 008977          235 WTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSC  292 (547)
Q Consensus       235 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  292 (547)
                      .||||+|+..|+.++++.|++.+++....  +..|.|+++.|+..++.++++.+++.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSR--NSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCccc--ccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999889999999888777655  346889999999999999999888865

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.33  E-value=2.9e-12  Score=89.75  Aligned_cols=54  Identities=37%  Similarity=0.696  Sum_probs=44.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHH
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILI  151 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll  151 (547)
                      |.||||+|++.|+.+++++|++++.+                ++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d----------------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD----------------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG----------------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999998766                6778999999999999999999999986

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.32  E-value=1.6e-11  Score=110.27  Aligned_cols=121  Identities=19%  Similarity=0.208  Sum_probs=112.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA  161 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  161 (547)
                      -..||.-++..|+.+-...||.-..+                ++..|..|.|+|..|+..|+.+++++|++.|++++...
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~----------------vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~q   75 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ----------------VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQ   75 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh----------------hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccc
Confidence            36799999999999999999875332                77889999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHH
Q 008977          162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLF  218 (547)
Q Consensus       162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  218 (547)
                      +..+.||||+|+.+|+.++.+.|++.|+.+...+.-|+|+-..|+.-|+.++|..+-
T Consensus        76 hg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   76 HGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             ccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999988764

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.28  E-value=9e-12  Score=133.75  Aligned_cols=104  Identities=23%  Similarity=0.281  Sum_probs=91.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCC
Q 008977           85 PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRN  164 (547)
Q Consensus        85 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  164 (547)
                      .|+.|+..|+.+.|+.|++.+++                ++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad----------------in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~  147 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD----------------PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKD  147 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC----------------CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCC
Confidence            58899999999999999998876                56779999999999999999999999999999987 78999


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHh-------CCCCCCCCCCCchHHHHH
Q 008977          165 NETPLYMAAANGSVEIVAKILQK-------CPSPAHEGPDGKTALHAA  205 (547)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~-------~~~~~~~~~~g~t~Lh~A  205 (547)
                      |.||||+|+..|+.+++++|+++       +++.+..+..|.+|+..+
T Consensus       148 G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        148 GKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             CCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            99999999999999999999998       677766666666665433

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.23  E-value=2.5e-11  Score=84.93  Aligned_cols=54  Identities=33%  Similarity=0.563  Sum_probs=27.1

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHH
Q 008977          131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL  185 (547)
Q Consensus       131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  185 (547)
                      |.||||+|++.|+.+++++|++.+.+++ ..|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            4555555555555555555555555554 33555555555555555555555553

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.20  E-value=1.3e-10  Score=124.95  Aligned_cols=108  Identities=26%  Similarity=0.242  Sum_probs=92.7

Q ss_pred             CHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHH
Q 008977          133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTE  212 (547)
Q Consensus       133 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~  212 (547)
                      +.|+.|+..|+.+.++.|++.|++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            35889999999999999999999987 77999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcc----cccchhhhhhccCCCcHHhHH
Q 008977          213 VIKQLFLH----EEKRSLTAVRDKYGWTPLHHA  241 (547)
Q Consensus       213 ~v~~Ll~~----~~~~~~~~~~d~~g~tpLh~A  241 (547)
                      ++++|+.+    ...+...+..+..|.+|+..+
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            99999965    112333444566666665544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.20  E-value=1.8e-11  Score=86.10  Aligned_cols=56  Identities=34%  Similarity=0.472  Sum_probs=26.0

Q ss_pred             HHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977          150 LIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA  205 (547)
Q Consensus       150 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A  205 (547)
                      |+++++......|..|.||||+|+..|+.+++++|++.|++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45566333346777777777777777777777777777777777777777777765

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.20  E-value=1.5e-11  Score=86.57  Aligned_cols=54  Identities=30%  Similarity=0.546  Sum_probs=33.0

Q ss_pred             hcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHH
Q 008977           69 DLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA  138 (547)
Q Consensus        69 ~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A  138 (547)
                      +.++.+++.+|..|.||||+||..|+.++|++|++.+.+                ++.+|..|.||||+|
T Consensus         3 ~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d----------------~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    3 EHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD----------------PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ---T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------------------TT---TTS--HHHH-
T ss_pred             ccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC----------------CCCCcCCCCCHHHhC
Confidence            334678899999999999999999999999999988776                678899999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=8.2e-11  Score=114.09  Aligned_cols=117  Identities=23%  Similarity=0.217  Sum_probs=89.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCC
Q 008977           85 PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRN  164 (547)
Q Consensus        85 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  164 (547)
                      .|.-|+..|..|+|+..+....+                ....|++|-|+||-|+..||.+||++|++.|++++ ..|.+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~D----------------pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSd  615 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTD----------------PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSD  615 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcC----------------CCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCC
Confidence            34557788999999988876555                34568889999999999999999999999999987 78899


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHhCCCCCC-CCCCCchHHHHHH--hcCCHHHHHHHH
Q 008977          165 NETPLYMAAANGSVEIVAKILQKCPSPAH-EGPDGKTALHAAV--YTYPTEVIKQLF  218 (547)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~-~~~~g~t~Lh~A~--~~~~~~~v~~Ll  218 (547)
                      |+||||.|+..++..+++.|++.|+-+-. .-.++.|+..-|-  +.|..+|.++|.
T Consensus       616 GWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  616 GWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             CCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            99999999999999999999998865433 3345666655442  235555666655

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.10  E-value=5.3e-10  Score=100.71  Aligned_cols=121  Identities=26%  Similarity=0.304  Sum_probs=73.8

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC
Q 008977          131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP  210 (547)
Q Consensus       131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~  210 (547)
                      -..||..++..|..+-+..|++--.+++ ..|..|.|||..|+.+|+.+++++|++.|+|+|..                
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn-~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~----------------   74 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVN-QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK----------------   74 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhh-ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc----------------
Confidence            4567777777777777777776544444 56777777777777777777777777777776542                


Q ss_pred             HHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHh
Q 008977          211 TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRIL  289 (547)
Q Consensus       211 ~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  289 (547)
                                         ++..+.||||.|+.+|+.++.++|++.|+.....+.  -|+|+-.+|+.-|+-++|..+-
T Consensus        75 -------------------qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNs--vgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   75 -------------------QHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNS--VGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             -------------------cccccccHHHHHHHcCCchHHHHHHhccCccccccc--hhhhHHHHHHHhcchHHHHHHh
Confidence                               233345555555555555555555555554444332  2555555555555555554443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=1.1e-10  Score=113.27  Aligned_cols=118  Identities=24%  Similarity=0.215  Sum_probs=101.5

Q ss_pred             eeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhc
Q 008977           46 HLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLG  125 (547)
Q Consensus        46 h~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~  125 (547)
                      .-|+..  |.+++  |+.++.    .-.+..+.|..|-|+||-|+..||.+||++|++.|++                +|
T Consensus       555 LDaaLe--GEldl--Vq~~i~----ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan----------------VN  610 (752)
T KOG0515|consen  555 LDAALE--GELDL--VQRIIY----EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN----------------VN  610 (752)
T ss_pred             Hhhhhc--chHHH--HHHHHH----hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc----------------cc
Confidence            556777  88888  777765    3455677899999999999999999999999999988                78


Q ss_pred             ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHH--HHCCCHHHHHHHHHh
Q 008977          126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMA--AANGSVEIVAKILQK  187 (547)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~  187 (547)
                      ..|.+|.||||.|+.+++..+++.|++.|+.+-...-.++.|+..-+  ...|..++.++|..-
T Consensus       611 a~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  611 AADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             CccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            88999999999999999999999999999988777777888887766  357888899998753

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.65  E-value=6.1e-08  Score=95.16  Aligned_cols=94  Identities=28%  Similarity=0.414  Sum_probs=50.5

Q ss_pred             ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCC
Q 008977           77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPH  156 (547)
Q Consensus        77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  156 (547)
                      .++.+..|.||+|+..|+-++|+++|++++.              +++++.++.|.|+||.|+..++-.+.++|++.|+.
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~--------------elld~~de~get~lhkaa~~~~r~vc~~lvdagas  959 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPS--------------ELLDMADETGETALHKAACQRNRAVCQLLVDAGAS  959 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCH--------------HHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh
Confidence            3444455555555555555555555555432              23444455555555555555555555555555555


Q ss_pred             CCCCCCCCCCcHHHHHHHCCCHHHHHHHH
Q 008977          157 VPYSANRNNETPLYMAAANGSVEIVAKIL  185 (547)
Q Consensus       157 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  185 (547)
                      +. ..|..|.||-.-|-+.|..++.-+|-
T Consensus       960 l~-ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  960 LR-KTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             he-ecccCCCChHHHHHhcCCchHHHHHh
Confidence            43 44555555555555555555555543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.54  E-value=3.7e-08  Score=100.95  Aligned_cols=88  Identities=18%  Similarity=0.339  Sum_probs=78.9

Q ss_pred             cCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccc-cCCCCHhHHHHHcCCHHHHH
Q 008977           70 LSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTN-EEQNTPLHEAVRLRSVDVAK  148 (547)
Q Consensus        70 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~iv~  148 (547)
                      .+....+..|..|+|+||+|+..|..+++++||++|.+                +..+| +.|.||||.|+..|+.|++.
T Consensus        40 ~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid----------------v~vqD~ESG~taLHRaiyyG~idca~  103 (1267)
T KOG0783|consen   40 SCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID----------------VFVQDEESGYTALHRAIYYGNIDCAS  103 (1267)
T ss_pred             hhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce----------------eeeccccccchHhhHhhhhchHHHHH
Confidence            35566788999999999999999999999999999887                55556 46999999999999999999


Q ss_pred             HHHhhCCCCCCCCCCCCCcHHHHHHH
Q 008977          149 ILIVADPHVPYSANRNNETPLYMAAA  174 (547)
Q Consensus       149 ~Ll~~~~~~~~~~~~~g~tpL~~A~~  174 (547)
                      .|+.+|..+. ..|++|.+||..-++
T Consensus       104 lLL~~g~SL~-i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  104 LLLSKGRSLR-IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHhcCCceE-EecccCCCHHHHHhh
Confidence            9999998876 899999999999886

>PF13606 Ank_3: Ankyrin repeat

Probab=98.46  E-value=2.3e-07  Score=55.38  Aligned_cols=27  Identities=41%  Similarity=0.629  Sum_probs=13.4

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHhCCCC
Q 008977          165 NETPLYMAAANGSVEIVAKILQKCPSP  191 (547)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~  191 (547)
                      |+||||+|+..|+.|++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            445555555555555555555554444

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.46  E-value=1.4e-07  Score=96.79  Aligned_cols=85  Identities=19%  Similarity=0.163  Sum_probs=79.7

Q ss_pred             HhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHH
Q 008977          123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTAL  202 (547)
Q Consensus       123 ~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~L  202 (547)
                      +.+++|..|+|+||.|+..+..+++++|+++|.++.-.....|.||||-|+..|+.|++-.||++|.+....|.+|.+||
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence            36788999999999999999999999999999999866667899999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 008977          203 HAAVY  207 (547)
Q Consensus       203 h~A~~  207 (547)
                      ..-++
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            98876

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.44  E-value=2.1e-07  Score=91.52  Aligned_cols=122  Identities=22%  Similarity=0.308  Sum_probs=106.0

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCC-cccccccc
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSP-SVLFQADA   80 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~-~~~~~~~~   80 (547)
                      ...|..|+..+|+-.++....+|-+.-.++.+..+.|       |+|+..  |+-++  |+|++.   ..+ ++++..|.
T Consensus       867 seeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sll-------h~a~~t--g~~ei--vkyild---h~p~elld~~de  932 (1004)
T KOG0782|consen  867 SEEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLL-------HYAAKT--GNGEI--VKYILD---HGPSELLDMADE  932 (1004)
T ss_pred             cHHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHH-------HHHHhc--CChHH--HHHHHh---cCCHHHHHHHhh
Confidence            4568899999999888888877767667777788888       999999  99999  999955   454 45678899


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA  153 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  153 (547)
                      .|+|+||-|+..++-.+.++|++.|+.                +...|..|.||-..|-+.|..+.+.+|-.+
T Consensus       933 ~get~lhkaa~~~~r~vc~~lvdagas----------------l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  933 TGETALHKAACQRNRAVCQLLVDAGAS----------------LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hhhHHHHHHHHhcchHHHHHHHhcchh----------------heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999999999999887                667899999999999999999999998753

>PF13606 Ank_3: Ankyrin repeat

Probab=98.43  E-value=3.2e-07  Score=54.77  Aligned_cols=29  Identities=31%  Similarity=0.450  Sum_probs=27.1

Q ss_pred             CCCCHhHHHHHcCCHHHHHHHHhhCCCCC
Q 008977          130 EQNTPLHEAVRLRSVDVAKILIVADPHVP  158 (547)
Q Consensus       130 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~  158 (547)
                      +|+||||+||+.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            48999999999999999999999998875

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.41  E-value=8.8e-07  Score=86.00  Aligned_cols=94  Identities=19%  Similarity=0.255  Sum_probs=86.4

Q ss_pred             cccccCCCC------HhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCC
Q 008977          125 GMTNEEQNT------PLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG  198 (547)
Q Consensus       125 ~~~~~~g~t------~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g  198 (547)
                      ..+|++|.+      -||..++.|+.+..-.|+..|++.++.....|.||||.|++.|+..-+++|+-+|+|+...|.+|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            455666655      48999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             chHHHHHHhcCCHHHHHHHH
Q 008977          199 KTALHAAVYTYPTEVIKQLF  218 (547)
Q Consensus       199 ~t~Lh~A~~~~~~~~v~~Ll  218 (547)
                      .||+.+|-..|+-++.+.|+
T Consensus       201 mtP~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLV  220 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHH
Confidence            99999999999998888776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.36  E-value=7.2e-07  Score=54.92  Aligned_cols=31  Identities=29%  Similarity=0.373  Sum_probs=19.8

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC
Q 008977          165 NETPLYMAAANGSVEIVAKILQKCPSPAHEG  195 (547)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~  195 (547)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5666666666666666666666666665543

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.34  E-value=5.5e-07  Score=87.01  Aligned_cols=90  Identities=23%  Similarity=0.300  Sum_probs=60.1

Q ss_pred             ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC-CCCCCCCCCCchHHHHHH
Q 008977          128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC-PSPAHEGPDGKTALHAAV  206 (547)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~g~t~Lh~A~  206 (547)
                      +.++..++.+|++.|....++.+.-.|.++. .+|.+.+|+||.||..|+.+++++|++.. .+++.+|+.|+|||.-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~-~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLE-TKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccccc-ccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            3445556667777777777666666666665 56666677777777777777777776654 556666667777777777


Q ss_pred             hcCCHHHHHHHH
Q 008977          207 YTYPTEVIKQLF  218 (547)
Q Consensus       207 ~~~~~~~v~~Ll  218 (547)
                      ..++.+++++|-
T Consensus       582 ~F~h~~v~k~L~  593 (622)
T KOG0506|consen  582 HFKHKEVVKLLE  593 (622)
T ss_pred             hcCcHHHHHHHH
Confidence            777776666665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.32  E-value=6.5e-07  Score=55.10  Aligned_cols=28  Identities=43%  Similarity=0.781  Sum_probs=26.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcC
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQ  108 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~  108 (547)
                      +|.||||+|+..|+.+++++|++++++.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            5899999999999999999999998873

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.31  E-value=0.00024  Score=74.58  Aligned_cols=120  Identities=20%  Similarity=0.223  Sum_probs=93.4

Q ss_pred             eeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhc
Q 008977           46 HLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLG  125 (547)
Q Consensus        46 h~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~  125 (547)
                      ..|+..  |+...  |+.+++......-+++..|.-|+++|+.|+.+.+.|++++|+++..                   
T Consensus        30 L~a~E~--gd~~~--V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~-------------------   86 (822)
T KOG3609|consen   30 LLAHEN--GDVPL--VAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSS-------------------   86 (822)
T ss_pred             HHHHHc--CChHH--HHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcc-------------------
Confidence            467777  88888  8888776555445678899999999999999999999999988632                   


Q ss_pred             ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC---------CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCC
Q 008977          126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHV---------PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA  192 (547)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~  192 (547)
                         . -..+|.+|+..|..+.|+.++.+-...         +...-..+.||+.+||..++.||++.|+++|+.+.
T Consensus        87 ---~-~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   87 ---E-EGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             ---c-cchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence               1 156888999999999999999753221         11223356799999999999999999999997653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.31  E-value=9.9e-07  Score=86.83  Aligned_cols=89  Identities=24%  Similarity=0.301  Sum_probs=74.2

Q ss_pred             cceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHH
Q 008977           44 ASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQM  123 (547)
Q Consensus        44 ~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  123 (547)
                      |||+++..  ...+.  ....+. .+ ....+..+|..|+||||+|+..||.+.++.|+..+++                
T Consensus        23 ~lh~~~~~--~~~~s--l~~el~-~~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad----------------   80 (560)
T KOG0522|consen   23 PLHWAVVT--TDSDS--LEQELL-AK-VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD----------------   80 (560)
T ss_pred             ccchhhhc--cchhh--HHHHHh-hh-hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC----------------
Confidence            36999888  66655  554433 22 4567788999999999999999999999999999887                


Q ss_pred             hcccccCCCCHhHHHHHcCCHHHHHHHHhhC
Q 008977          124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVAD  154 (547)
Q Consensus       124 l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~  154 (547)
                      +..+|.+|.+|||.|+..|+.+++..++.+-
T Consensus        81 v~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   81 VSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             ccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence            5678999999999999999999998888753

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.29  E-value=9e-07  Score=85.55  Aligned_cols=89  Identities=24%  Similarity=0.290  Sum_probs=79.5

Q ss_pred             HHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCC
Q 008977            4 KLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGD   83 (547)
Q Consensus         4 ~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~   83 (547)
                      .+++|++.||+..++.+.-.|.|.+..|.+..|+|       |+|+..  |+.+.  +++|++   .+..+.+.+|.-|+
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaL-------HvAAaE--G~v~v--~kfl~~---~~kv~~~~kDRw~r  574 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTAL-------HVAAAE--GHVEV--VKFLLN---ACKVDPDPKDRWGR  574 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccccccccccchhh-------eeeccc--CceeH--HHHHHH---HHcCCCChhhccCC
Confidence            46899999999999999999999999997777777       999999  99999  999966   46677778999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhh
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAK  106 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~  106 (547)
                      |||.-|...+|.+++++|-+...
T Consensus       575 tPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  575 TPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             CcchHhHhcCcHHHHHHHHHHhc
Confidence            99999999999999999987643

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.26  E-value=3.7e-06  Score=81.75  Aligned_cols=94  Identities=21%  Similarity=0.317  Sum_probs=80.9

Q ss_pred             cccCCCh------HHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHH
Q 008977           78 ADAKGDS------PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILI  151 (547)
Q Consensus        78 ~~~~g~t------~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll  151 (547)
                      +|.+|.|      -||..++.|+.+..-.||..|++.+.               ...+.|.||||.|++.|+.--+++|+
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~---------------~hpekg~TpLHvAAk~Gq~~Q~ElL~  187 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANF---------------FHPEKGNTPLHVAAKAGQILQAELLA  187 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCC---------------CCcccCCchhHHHHhccchhhhhHHh
Confidence            4555554      49999999999999999999987422               22467999999999999999999999


Q ss_pred             hhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHh
Q 008977          152 VADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK  187 (547)
Q Consensus       152 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  187 (547)
                      -+|+++. ..|.+|.||+.+|-..|+.++.+.|++.
T Consensus       188 vYGAD~~-a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  188 VYGADPG-AQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             hccCCCC-CCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            9999987 8999999999999999999988877753

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.25  E-value=2.9e-06  Score=84.06  Aligned_cols=60  Identities=30%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             cCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCC
Q 008977          129 EEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP  189 (547)
Q Consensus       129 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  189 (547)
                      .+|.|+||+||+.|++.+.++|+=+|.++. .+|..|.|+|+||-+.|..|++..|+++|+
T Consensus       659 ~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  659 GDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDAHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             CCCcchhhhhhhhcchhHHHHHHHhCccce-ecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            344455555555555555555554444443 444455555555555555555555555443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.10  E-value=5.1e-06  Score=81.99  Aligned_cols=87  Identities=26%  Similarity=0.387  Sum_probs=52.6

Q ss_pred             cHHHHHHHCCCHHHHHHHHH--hCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhc
Q 008977          167 TPLYMAAANGSVEIVAKILQ--KCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYS  244 (547)
Q Consensus       167 tpL~~A~~~g~~~iv~~Ll~--~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~  244 (547)
                      -|+|.+.-....+-....+.  .+..++.+|..|+||||.|+..|+.+.++.|+.   .......++.+|++|||.|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~---a~Adv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLS---AGADVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHh---cCCCccccccccccHHHHHHHc
Confidence            34777666555544443222  223445566667777777777777777777762   3333455667777777777777


Q ss_pred             CChHHHHHHhcc
Q 008977          245 GRELTSKLLLDH  256 (547)
Q Consensus       245 g~~~~v~~Ll~~  256 (547)
                      |+.+++..++.+
T Consensus        99 g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 GNEQIITEVLRH  110 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            776666666654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.09  E-value=9.2e-06  Score=84.90  Aligned_cols=129  Identities=17%  Similarity=0.231  Sum_probs=99.1

Q ss_pred             HHHHHHHHcCCchHHHHHhhh----hhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccc
Q 008977            3 RKLFEAAAKGDIEPFREIARD----ELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQA   78 (547)
Q Consensus         3 ~~L~~A~~~g~~~~l~~ll~~----~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~   78 (547)
                      .....|+++||.-.++..++.    ..++|+.|.-|.+.|       ++|+.+  .+.++  .++|++    .+...   
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al-------~iai~n--enle~--~eLLl~----~~~~~---   88 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLAL-------HIAIDN--ENLEL--QELLLD----TSSEE---   88 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhce-------eccccc--ccHHH--HHHHhc----Ccccc---
Confidence            356789999999999999886    367888898888888       999999  99999  999866    22211   


Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC
Q 008977           79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP  158 (547)
Q Consensus        79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~  158 (547)
                          ..+|.+|+..|..++|+.++.+....+..-. .     .+.-...-..+-|||..||..+|.||++.|+++|..+.
T Consensus        89 ----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~-~-----~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   89 ----GDALLLAIAVGSVPLVELLLVHFVDAPYLER-S-----GDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHhcccccchhcc-c-----cccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence                4589999999999999999998554321100 0     00011223457899999999999999999999998876


Q ss_pred             C
Q 008977          159 Y  159 (547)
Q Consensus       159 ~  159 (547)
                      .
T Consensus       159 ~  159 (822)
T KOG3609|consen  159 I  159 (822)
T ss_pred             C
Confidence            3

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.03  E-value=1.3e-05  Score=79.48  Aligned_cols=88  Identities=22%  Similarity=0.205  Sum_probs=60.6

Q ss_pred             hHHHHHcCCHHHHHHHHhhCCCC---CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCH
Q 008977          135 LHEAVRLRSVDVAKILIVADPHV---PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT  211 (547)
Q Consensus       135 Lh~A~~~g~~~iv~~Ll~~~~~~---~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~  211 (547)
                      |-.|+...++..+-+|+.+|...   ....+.+|+|+||+||..|+..+.++|+-+|+|+..+|..|+|+|.||-..|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            44566666666677777665432   122345667777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcccc
Q 008977          212 EVIKQLFLHEE  222 (547)
Q Consensus       212 ~~v~~Ll~~~~  222 (547)
                      +++..|++++.
T Consensus       708 ec~d~llq~gc  718 (749)
T KOG0705|consen  708 ECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHcCC
Confidence            77777775554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.92  E-value=1.4e-05  Score=86.03  Aligned_cols=90  Identities=24%  Similarity=0.307  Sum_probs=74.2

Q ss_pred             ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977          128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY  207 (547)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~  207 (547)
                      -..|.|+||.|+..|...++++|++.|++++ ..|..|.+|+|.+...|+...+..++++|++++..+.+|..++++|..
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn-~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVN-ALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcch-hhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhh
Confidence            3457889999999998889999999888866 788888999999999999988898999888888888889999988877


Q ss_pred             cCCHHHHHHHH
Q 008977          208 TYPTEVIKQLF  218 (547)
Q Consensus       208 ~~~~~~v~~Ll  218 (547)
                      ..+.+.+-++.
T Consensus       732 ~~~~d~~~l~~  742 (785)
T KOG0521|consen  732 AANADIVLLLR  742 (785)
T ss_pred             hccccHHHHHh
Confidence            65555554443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.85  E-value=3.8e-05  Score=65.75  Aligned_cols=71  Identities=21%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             ccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHh
Q 008977           73 SVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIV  152 (547)
Q Consensus        73 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~  152 (547)
                      .+++.+|..|+|||++|+..|+.+.|.+|+.+|...               +...|..|.+++.+|-+.|+.++++.|.+
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~---------------vgv~d~ssldaaqlaek~g~~~fvh~lfe   67 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF---------------VGVTDESSLDAAQLAEKGGAQAFVHSLFE   67 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCccc---------------ccccccccchHHHHHHhcChHHHHHHHHH
Confidence            456778888999999999999999999999888433               45678888899999999999999998888


Q ss_pred             hCCCCC
Q 008977          153 ADPHVP  158 (547)
Q Consensus       153 ~~~~~~  158 (547)
                      ...+..
T Consensus        68 ~~~ets   73 (223)
T KOG2384|consen   68 NDRETS   73 (223)
T ss_pred             HhccCC
Confidence            765544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.83  E-value=4.5e-05  Score=72.05  Aligned_cols=73  Identities=26%  Similarity=0.362  Sum_probs=62.7

Q ss_pred             CCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977          132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA  205 (547)
Q Consensus       132 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A  205 (547)
                      .--|.+||+.|..+.++.|++.|.+++ ..|....+||++|+..||.+++++|+++|+-......+|...+.-|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            345889999999999999999999998 8899999999999999999999999999987666555666654333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.80  E-value=2.2e-05  Score=83.89  Aligned_cols=130  Identities=23%  Similarity=0.268  Sum_probs=104.7

Q ss_pred             CCCCCCCCcHHHHHHHCCCHHHHHHHHHh-CCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          159 YSANRNNETPLYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                      ......|.+.+|+++..+..-+++.+++- |......|.+|...+|.++ .++.+.+-+++  .+.+..++.+|..|+||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~--~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPI--SADGVAIDIRDRNGWTP  644 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEE--eecccccccccCCCCcc
Confidence            35567889999999999999999999996 7767777888888999955 45556665555  56777788999999999


Q ss_pred             HhHHHhcCChHHHHHHhccCCCcceecC----CCCCchHHHHHHHcCCHHHHHHHhhc
Q 008977          238 LHHAAYSGRELTSKLLLDHDKSAAFIGG----KDRNMTALHLAAASGHIMVVDRILSS  291 (547)
Q Consensus       238 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~----~~~g~tpL~~A~~~g~~~~v~~Ll~~  291 (547)
                      ||+|+.+|+..++..|.+.|++......    .-.|.|+-.+|..+|+..+.-+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999999987766553322    12488999999999998887777654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.74  E-value=6.4e-05  Score=71.05  Aligned_cols=74  Identities=20%  Similarity=0.269  Sum_probs=60.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR  163 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  163 (547)
                      --|..||+.|+.+.|++|++.|.+                +|..|+...+||.+|+.+||.+++++|+++|+-..  +|.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn----------------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~--rdt   99 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN----------------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS--RDT   99 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC----------------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc--ccc
Confidence            458999999999999999998876                77889999999999999999999999999998643  444


Q ss_pred             -CCCcHHHHHHHCC
Q 008977          164 -NNETPLYMAAANG  176 (547)
Q Consensus       164 -~g~tpL~~A~~~g  176 (547)
                       +|.-. |+++.+.
T Consensus       100 f~G~RC-~YgaLnd  112 (516)
T KOG0511|consen  100 FDGDRC-HYGALND  112 (516)
T ss_pred             cCcchh-hhhhhhH
Confidence             45444 4444443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.72  E-value=3.3e-05  Score=82.65  Aligned_cols=127  Identities=24%  Similarity=0.165  Sum_probs=100.1

Q ss_pred             ccccccCCChHHHHHHHcCCHHHHHHHHHH-hhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977           75 LFQADAKGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA  153 (547)
Q Consensus        75 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  153 (547)
                      .......|+|.+|+++..+...+++.+++. +..                ....|.+|.-.+|. |..++.+.+-+|+..
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~----------------~~eld~d~qgV~hf-ca~lg~ewA~ll~~~  629 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG----------------DLELDRDGQGVIHF-CAALGYEWAFLPISA  629 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccC----------------chhhcccCCChhhH-hhhcCCceeEEEEee
Confidence            345677899999999999999999999885 222                12346677777777 566777777777765


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCC------CCCCCCchHHHHHHhcCCHHHHHHHH
Q 008977          154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA------HEGPDGKTALHAAVYTYPTEVIKQLF  218 (547)
Q Consensus       154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~------~~~~~g~t~Lh~A~~~~~~~~v~~Ll  218 (547)
                      +..-...+|..|+||||+|+..|+..++..|++.|+++.      ...+.|.|+-..|-.+|+..+..+|-
T Consensus       630 ~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~ls  700 (975)
T KOG0520|consen  630 DGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLS  700 (975)
T ss_pred             cccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHh
Confidence            444445899999999999999999999999998886554      34567899999999999988877775

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.52  E-value=0.00011  Score=79.15  Aligned_cols=90  Identities=23%  Similarity=0.345  Sum_probs=79.9

Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC
Q 008977           80 AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY  159 (547)
Q Consensus        80 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~  159 (547)
                      ..|.|+||.|+..|..-++++|++++++                ++..|..|++|+|.+...|+...+..|++++++.+ 
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~----------------vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~-  716 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD----------------VNALDSKGRTPLHHATASGHTSIACLLLKRGADPN-  716 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc----------------chhhhccCCCcchhhhhhcccchhhhhcccccccc-
Confidence            4578999999999999999999999887                67889999999999999999999999999999887 


Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHH
Q 008977          160 SANRNNETPLYMAAANGSVEIVAKILQ  186 (547)
Q Consensus       160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~  186 (547)
                      ..+..|.+|+.+|....+.+++-++.-
T Consensus       717 a~~~~~~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  717 AFDPDGKLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             ccCccCcchhhHHhhhccccHHHHHhh
Confidence            789999999999987766666555543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.04  E-value=0.0015  Score=56.20  Aligned_cols=69  Identities=12%  Similarity=0.055  Sum_probs=58.1

Q ss_pred             hcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCC
Q 008977          124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA  192 (547)
Q Consensus       124 l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~  192 (547)
                      +|.+|..|.||++.|+..|+.+.+.+|+.+|....-..|..+.+.+.+|-+.|..+++..|.+.-.+-.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets   73 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETS   73 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCC
Confidence            677888999999999999999999999999855555888899999999999999999999888754433

>smart00248 ANK ankyrin repeats

Probab=96.03  E-value=0.013  Score=33.66  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=12.1

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhhCC
Q 008977          131 QNTPLHEAVRLRSVDVAKILIVADP  155 (547)
Q Consensus       131 g~t~Lh~A~~~g~~~iv~~Ll~~~~  155 (547)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3445555555555555555544443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.99  E-value=0.013  Score=33.67  Aligned_cols=29  Identities=38%  Similarity=0.575  Sum_probs=26.0

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCCC
Q 008977          164 NNETPLYMAAANGSVEIVAKILQKCPSPA  192 (547)
Q Consensus       164 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~  192 (547)
                      .|.||+|+|+..++.++++.|++.+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            37899999999999999999999988653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.67  E-value=0.015  Score=57.57  Aligned_cols=63  Identities=21%  Similarity=0.170  Sum_probs=43.1

Q ss_pred             HHHHHHHHhhCCCCCCC-----CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHH
Q 008977          144 VDVAKILIVADPHVPYS-----ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV  206 (547)
Q Consensus       144 ~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~  206 (547)
                      .+.+++|.+++...+..     .+..-.|+||+|+.+|..+++.+||+.|+|+..+|..|+||...+.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            45666666665554422     1223457788888888888888888888888777777888776665

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.49  E-value=0.21  Score=43.29  Aligned_cols=135  Identities=16%  Similarity=0.039  Sum_probs=91.2

Q ss_pred             HhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHH
Q 008977          134 PLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEV  213 (547)
Q Consensus       134 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  213 (547)
                      .|..|+..+...+++..-+...+-    -...++.+..||+..+.|+|+++-+.-.-     .+-.+.+..|....+.++
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i-----~~~~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI-----YNPEDIFDIAFAKKDLSL  119 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC-----CCchhhhhhhhhccchhH
Confidence            567799999999998877643211    23457889999999999999999554322     234466778888887765


Q ss_pred             HHHHHcccccchhhhh-hccCCC-------cHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHH
Q 008977          214 IKQLFLHEEKRSLTAV-RDKYGW-------TPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVV  285 (547)
Q Consensus       214 v~~Ll~~~~~~~~~~~-~d~~g~-------tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  285 (547)
                      ...    +.. -+.+. ....+.       .-|..|+..|-...+...+++|.+.        ..++|..|++.++..++
T Consensus       120 ysl----GY~-l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~--------~~~vls~Av~ynhRkIL  186 (192)
T PF03158_consen  120 YSL----GYK-LLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV--------DIIVLSQAVKYNHRKIL  186 (192)
T ss_pred             HHH----HHH-HHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc--------cHHHHHHHHHhhHHHHH
Confidence            321    100 00000 000111       2367899999999988888888643        34899999999999999


Q ss_pred             HHHhh
Q 008977          286 DRILS  290 (547)
Q Consensus       286 ~~Ll~  290 (547)
                      .+++.
T Consensus       187 ~yfi~  191 (192)
T PF03158_consen  187 DYFIR  191 (192)
T ss_pred             HHhhc
Confidence            88764

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.88  E-value=0.1  Score=52.03  Aligned_cols=45  Identities=18%  Similarity=0.160  Sum_probs=39.8

Q ss_pred             ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHH
Q 008977          128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAA  173 (547)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  173 (547)
                      +.--.|+||+|+.+|.-+++.+||+.+.+.. .+|..|.||..++.
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~-~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDPS-TKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCch-hcccCCCCcccccc
Confidence            3346799999999999999999999997664 89999999999887

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.79  E-value=0.52  Score=42.27  Aligned_cols=23  Identities=17%  Similarity=0.167  Sum_probs=18.3

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhh
Q 008977          131 QNTPLHEAVRLRSVDVAKILIVA  153 (547)
Q Consensus       131 g~t~Lh~A~~~g~~~iv~~Ll~~  153 (547)
                      -.+++-+|+.++..+++.+|+..
T Consensus       179 A~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhh
Confidence            45788888888888888888874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=91.27  E-value=3.3  Score=40.76  Aligned_cols=120  Identities=9%  Similarity=0.065  Sum_probs=59.9

Q ss_pred             ccccCCCCHhHHHHHcCCHHHHHHHHhh--CCCCCCCCCCCCCcHHHHHHHCCCHH----HHHHHHHhCCCCCCCCCCCc
Q 008977          126 MTNEEQNTPLHEAVRLRSVDVAKILIVA--DPHVPYSANRNNETPLYMAAANGSVE----IVAKILQKCPSPAHEGPDGK  199 (547)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~--~~~~~~~~~~~g~tpL~~A~~~g~~~----iv~~Ll~~~~~~~~~~~~g~  199 (547)
                      ..|..|+..+..+...++.+..+.+++.  +.-.....+..|...+.-.......+    +++.+.++-. .-..|..|.
T Consensus       124 ~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~-~L~~d~~Gn  202 (322)
T cd07920         124 VKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHAL-ELVQDQFGN  202 (322)
T ss_pred             hhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHhcCCchh
Confidence            3467788787777777766665555542  11112234556666666666654433    2333332211 112456676


Q ss_pred             hHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCC
Q 008977          200 TALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR  246 (547)
Q Consensus       200 t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~  246 (547)
                      ..+..+...+..+..+.++..-......-..++.|...+..+...+.
T Consensus       203 ~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~  249 (322)
T cd07920         203 YVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHAS  249 (322)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCC
Confidence            66666666665544444332111111112345556555555555543

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=90.29  E-value=1  Score=39.16  Aligned_cols=134  Identities=14%  Similarity=0.062  Sum_probs=82.7

Q ss_pred             eeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhc
Q 008977           46 HLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLG  125 (547)
Q Consensus        46 h~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~  125 (547)
                      .-|+.+  +...+  ++...+.+...       -...++.+-.||+..+.|+|+|+-+.-.                   
T Consensus        51 ~HAVk~--nmL~I--Lqkyke~L~~~-------~~~~q~LFElAC~~qkydiV~WI~qnL~-------------------  100 (192)
T PF03158_consen   51 YHAVKY--NMLSI--LQKYKEDLENE-------RYLNQELFELACEEQKYDIVKWIGQNLH-------------------  100 (192)
T ss_pred             HHHHHc--CcHHH--HHHHHHHhhcc-------hhHHHHHHHHHHHHccccHHHHHhhccC-------------------
Confidence            667777  77666  66664433211       1234678888888888999988844311                   


Q ss_pred             ccccCCCCHhHHHHHcCCHHHH----HHHHhhCCCCCCCCCC--CCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCc
Q 008977          126 MTNEEQNTPLHEAVRLRSVDVA----KILIVADPHVPYSANR--NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGK  199 (547)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~iv----~~Ll~~~~~~~~~~~~--~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~  199 (547)
                        -.+-.+-+-.|...++.+..    +++.++.... ...|.  --..-|..|+.+|-...+...+++|.+.+      .
T Consensus       101 --i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~------~  171 (192)
T PF03158_consen  101 --IYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD------I  171 (192)
T ss_pred             --CCCchhhhhhhhhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc------H
Confidence              22334566677777766543    2233322111 00010  01134677888888888888888887653      3


Q ss_pred             hHHHHHHhcCCHHHHHHHH
Q 008977          200 TALHAAVYTYPTEVIKQLF  218 (547)
Q Consensus       200 t~Lh~A~~~~~~~~v~~Ll  218 (547)
                      ++|..|+.+++..++.+++
T Consensus       172 ~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  172 IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHhhHHHHHHHhh
Confidence            7888888888888887776

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=89.26  E-value=1.7  Score=39.14  Aligned_cols=94  Identities=14%  Similarity=0.145  Sum_probs=52.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHH--cCCHHHHHHHHhhCC---CC
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR--LRSVDVAKILIVADP---HV  157 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~--~g~~~iv~~Ll~~~~---~~  157 (547)
                      .++|.+|..++..+++.+|+.+-.-...+.           ..+..  +..-+.++..  ..+..++++.+++|-   +-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv-----------~~~~~--~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~  246 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDV-----------ASMEK--ELYDIEYLLSEHSASYKVLEYFINRGLVDVNK  246 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchh-----------hhcCc--chhhHHHHHhhcCCcHHHHHHHHhccccccch
Confidence            578899998999999999988643211111           11111  1112223322  234556666666542   22


Q ss_pred             CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCC
Q 008977          158 PYSANRNNETPLYMAAANGSVEIVAKILQKCP  189 (547)
Q Consensus       158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  189 (547)
                      ...+-..|.|-|--|.+.++.|++..|+++|+
T Consensus       247 ~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  247 KFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             hhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            22344466677777777777777777776665

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.47  E-value=0.82  Score=34.03  Aligned_cols=48  Identities=25%  Similarity=0.306  Sum_probs=33.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA  153 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  153 (547)
                      ...+..|+..|+.|+++.+++.+..                       ....+..|+..-+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~-----------------------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP-----------------------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-----------------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            3467788888888888888764321                       13467788888888888888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.91  E-value=1.6  Score=32.52  Aligned_cols=47  Identities=15%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             CHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHh
Q 008977          133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK  187 (547)
Q Consensus       133 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  187 (547)
                      ..+..|+..|+.|+++.+++.+ ...       ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~-------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD-------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH-------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3567777777777777777543 111       3557777777777777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	547
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-14
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-13
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-07
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		8e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-09
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-07
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-07
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		9e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-05
1uoh_A	226	Human Gankyrin Length = 226		2e-06
1uoh_A	226	Human Gankyrin Length = 226		1e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-06
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		7e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-05
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		7e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-04
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		5e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 118/273 (43%), Gaps = 41/273 (15%)
Query: 84  SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS 143
           +PLH+A+  G   IVK L          LQRG          ++N +  TPLH A R   
Sbjct: 16  TPLHVASFMGHLPIVKNL----------LQRGASP------NVSNVKVETPLHMAARAGH 59
Query: 144 VDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALH 203
            +VAK L+     V   A ++++TPL+ AA  G   +V  +L+   +P      G T LH
Sbjct: 60  TEVAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 118
Query: 204 AAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFI 263
            A      E +  L    EK +  A   K G+TPLH AA  G+   ++LLL+ D      
Sbjct: 119 IAAREGHVETVLALL---EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175
Query: 264 GGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAM------VSLDLL 317
           G     +T LH+A    ++ +V ++L    G        G+  LH A       V+  LL
Sbjct: 176 G--KNGLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232
Query: 318 QSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
           Q  G               AE V G TPLH+ A
Sbjct: 233 QYGGSA------------NAESVQGVTPLHLAA 253

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEK 223
           N  TPL++AA NG +E+V  +L+       +  +G+T LH A      EV+K L    E 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL---EA 57
Query: 224 RSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHI 282
            +    +DK G TPLH AA +G     KLLL+   + A +  KD+N  T LHLAA +GH+
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAARNGHL 114
Query: 283 MVVDRILSS 291
            VV  +L +
Sbjct: 115 EVVKLLLEA 123

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 21/123 (17%)
Query: 234 GWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSC 292
           G TPLH AA +G     KLLL+   + A +  KD+N  T LHLAA +GH+ VV  +L + 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 293 DGCCAKVDERGWNFLHFAMVS-----LDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLH 347
               AK D+ G   LH A  +     + LL  +G  +            A+D NG TPLH
Sbjct: 59  ADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----------AKDKNGRTPLH 106
Query: 348 VVA 350
           + A
Sbjct: 107 LAA 109

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 27/222 (12%)
Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           +AD  GD+PLH+A  +G+   V  L+   ++  R+L             + N  + TPLH
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD------------IYNNLRQTPLH 51
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH--- 193
            AV      V ++L+ A    P + +R+ +T  ++A  + S   +  +L    +P     
Sbjct: 52  LAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSA-APGTLDL 109
Query: 194 --EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
                DG TALH AV T   E ++ L   E    + AV  K G +PL HA  +      +
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLL--ERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 252 LLLDH--DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS 291
           LLL H  + +A    G     +ALH A+  G + +V  ++ S
Sbjct: 168 LLLQHGANVNAQMYSGS----SALHSASGRGLLPLVRTLVRS 205

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQL 217
           P +++ +  TPL+ AA NG  EIV  +L K   P  +  DG+T LH A      E++K L
Sbjct: 30  PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 89
Query: 218 FLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
                K +    +D  G TPLH+AA +G +   KLLL
Sbjct: 90  L---SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
           L EA      D  +IL+     V  + + N  TPL++AAANG +EIV  +L+        
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
              G T LH A Y    E+++ L  H    +     D+ GWTPLH AA SG+    ++LL
Sbjct: 69  DSAGITPLHLAAYDGHLEIVEVLLKHGADVN---AYDRAGWTPLHLAALSGQLEIVEVLL 125
Query: 255 DH 256
            H
Sbjct: 126 KH 127

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 127 TNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKI 184
           ++ +  TPLH A      +V K+L+   ADP+   S   + +TPL++AA NG  E+V  +
Sbjct: 33  SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS---DGKTPLHLAAENGHKEVVKLL 89
Query: 185 LQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYS 244
           L +   P  +  DGKT LH A      EV+K L     + +     D  G TPL  A   
Sbjct: 90  LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL---SQGADPNTSDSDGRTPLDLAREH 146
Query: 245 GRELTSKLL 253
           G E   KLL
Sbjct: 147 GNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 169 LYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTA 228
           L  AA NG+ + V  +L+          DGKT LH A      EV+K L     + +   
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLL---SQGADPN 64
Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDH--DKSAAFIGGKDRNMTALHLAAASGHIMVVD 286
            +D  G TPLH AA +G +   KLLL    D +A    GK    T LHLAA +GH  VV 
Sbjct: 65  AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK----TPLHLAAENGHKEVVK 120
Query: 287 RILS 290
            +LS
Sbjct: 121 LLLS 124

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
           EA    + D  K LI     V  S + +  TPL+ AA NG  E+V  ++ K      +  
Sbjct: 10  EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
           DG+T LH A      EV+K L     K +    +D  G TPLHHAA +G +   KLL+  
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLI---SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-- 123
Query: 257 DKSAAFIGGKDRNMTALHLAAASGHIMVV 285
            K A          T L LA   G+  VV
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEVV 152

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEK 223
           N  TPL++AA NG +E+V  +L+       +  +G+T LH A      EV+K L    E 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL---EA 57
Query: 224 RSLTAVRDKYGWTPLHHAAYSGRELTSKLLLD 255
            +    +DK G TPLH AA +G     KLLL+
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
           +G+T LH A      EV+K L    E  +    +DK G TPLH AA +G     KLLL+ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE- 56
Query: 257 DKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSS 291
             + A +  KD+N  T LHLAA +GH+ VV  +L +
Sbjct: 57  --AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 73  SVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN 132
           S+  + D    + LH A   G   IV+FL          LQ GV   ++   G +     
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVPVNDKDDAGWS----- 75
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
            PLH A      ++ K L+V   HV  + N+N  TPL+ AA+    EI   +L+   +P 
Sbjct: 76  -PLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
            +     TA+H A      +++  L  +   ++ T ++D  G TPLH A    R   +K 
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFY---KASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 253 LL 254
           L+
Sbjct: 191 LV 192

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 144 VDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-GKTAL 202
           +D  K  I+AD  +    ++++ T L+ A + G  EIV  +LQ    P ++  D G + L
Sbjct: 19  LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPL 77
Query: 203 HAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAF 262
           H A      E++K L +   K +     ++ G TPLH+AA   R   + +LL+     A 
Sbjct: 78  HIAASAGXDEIVKALLV---KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGAN 131
Query: 263 IGGKDR-NMTALHLAAASGHIMVVDRIL 289
              KD  + TA+H AAA G++ +V  +L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILL 159

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 73  SVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN 132
           S+  + D    + LH A   G   IV+FL          LQ GV   ++   G +     
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVPVNDKDDAGWS----- 75
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
            PLH A      ++ K L+V   HV  + N+N  TPL+ AA+    EI   +L+   +P 
Sbjct: 76  -PLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
            +     TA+H A      +++  L  +   ++ T ++D  G TPLH A    R   +K 
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFY---KASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 253 LL 254
           L+
Sbjct: 191 LV 192

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 144 VDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-GKTAL 202
           +D  K  I+AD  +    ++++ T L+ A + G  EIV  +LQ    P ++  D G + L
Sbjct: 19  LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPL 77
Query: 203 HAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAF 262
           H A      E++K L +   K +     ++ G TPLH+AA   R   + +LL+     A 
Sbjct: 78  HIAASAGRDEIVKALLV---KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGAN 131
Query: 263 IGGKDR-NMTALHLAAASGHIMVVDRIL 289
              KD  + TA+H AAA G++ +V  +L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILL 159

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 65/154 (42%), Gaps = 23/154 (14%)
Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
           G SPLH+AA  G A ++  L+K                     G  N +Q  PLH A + 
Sbjct: 86  GSSPLHVAALHGRADLIPLLLKHGANA----------------GARNADQAVPLHLACQQ 129
Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTA 201
               V K L+ ++   P   + +  TPL  A + G  E+VA +LQ   S       G TA
Sbjct: 130 GHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 202 LHAAVYTYPTEVIKQLFLHE------EKRSLTAV 229
           LH AV      V++ L LH        KR  TAV
Sbjct: 189 LHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 19/204 (9%)
Query: 89  AAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAK 148
           A   GD  +V++L+++ ++   D +  V +A+ +             H   +      A+
Sbjct: 18  AVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFC-----------HPLCQCPKCAPAQ 66
Query: 149 ILIVADPHVPYSAN---RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA 205
             +   P      N   ++  +PL++AA +G  +++  +L+   +      D    LH A
Sbjct: 67  KRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLA 126
Query: 206 VYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGG 265
                 +V+K L    +  +    +D  G TPL +A   G      LLL H   A+    
Sbjct: 127 CQQGHFQVVKCLL---DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH--GASINAS 181
Query: 266 KDRNMTALHLAAASGHIMVVDRIL 289
            ++  TALH A    H+ VV+ +L
Sbjct: 182 NNKGNTALHEAVIEKHVFVVELLL 205

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
           +D+ G +PLH AAK+G   IVK LI              K A+   +   + +  TPLH 
Sbjct: 33  SDSDGRTPLHYAAKEGHKEIVKLLIS-------------KGAD---VNAKDSDGRTPLHY 76
Query: 138 AVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD 197
           A +    ++ K+LI     V  + + +  TPL+ AA  G  EIV  ++ K         D
Sbjct: 77  AAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSD 135
Query: 198 GKTALHAAVYTYPTEVIKQL 217
           G+T L  A      E++K L
Sbjct: 136 GRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 169 LYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTA 228
           L  AA NG+ + V  +++          DG+T LH A      E++K L     K +   
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLI---SKGADVN 64
Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDR 287
            +D  G TPLH+AA  G +   KLL+      A +  KD +  T LH AA  GH  +V  
Sbjct: 65  AKDSDGRTPLHYAAKEGHKEIVKLLI---SKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 288 ILS 290
           ++S
Sbjct: 122 LIS 124

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 8/148 (5%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
           L EA R    D  +IL+     V  + +++  TPL++AA  G +EIV  +L+       +
Sbjct: 6   LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
             DG T LH A      E+++ L    +  +    +DK G+TPLH AA  G     ++LL
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 255 DHDKSAAFIGGKDR-NMTALHLAAASGH 281
              K+ A +  +D+   T   LA   GH
Sbjct: 122 ---KAGADVNAQDKFGKTPFDLAIREGH 146

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 48/226 (21%)
Query: 58  SVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVK 117
           S  T+ V  +L+    + + A+  G + LH A    +  +VKFL++              
Sbjct: 50  SGDTEEVLRLLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENGAN---------- 98
Query: 118 SAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYM------ 171
                 +   + E   PLH A     +D+A+ LI    HV  + N   +TPL +      
Sbjct: 99  ------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAM 151
Query: 172 ----------------AAANGSVEIVAKILQKCPSPAH-----EGPDGKTALHAAVYTYP 210
                           AA      I+ +  ++  +  H         G TALH A     
Sbjct: 152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211
Query: 211 TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
           TEV+K L    + R    ++D  GWTPLH AA+ G+E   ++L+++
Sbjct: 212 TEVLKLLI---QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 6/169 (3%)
Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
           M ++ + +PLH A     VD+  +L+ A  ++  + + +  TPL  AA N  +E V  ++
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 186 QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSG 245
           +       +  +G T LH A      EV++  +L    +     +D  GWTP+  A    
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQ--YLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 246 RELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS-CD 293
                KLLL    S   I   + N+  LH AA SG + + + +L++ CD
Sbjct: 123 HVDLVKLLLS-KGSDINIRDNEENI-CLHWAAFSGCVDIAEILLAAKCD 169

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
           L EA R    D  +IL+     V  + +++  TPL++AA  G +EIV  +L+       +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
             DG T LH A      E+++ L    +  +    +DK G+TPLH AA  G     ++LL
Sbjct: 77  DKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 255 DHDKSAAFIGGKDR-NMTALHLAAASGH 281
              K+ A +  +D+   TA  ++  +G+
Sbjct: 134 ---KAGADVNAQDKFGKTAFDISIDNGN 158

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
           L EA R    D  +IL+     V  + +++  TPL++AA  G +EIV  +L+       +
Sbjct: 6   LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
             DG T LH A      E+++ L    +  +    +DK G+TPLH AA  G     ++LL
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 255 DHDKSAAFIGGKDR-NMTALHLAAASGH 281
              K+ A +  +D+   T   LA  +G+
Sbjct: 122 ---KAGADVNAQDKFGKTPFDLAIDNGN 146

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
           DG T LH A      E+++ L    +  +    +DK G+TPLH AA  G     ++LL  
Sbjct: 34  DGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-- 88
Query: 257 DKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSS 291
            K+ A +  KD++  T LHLAA  GH+ +V+ +L +
Sbjct: 89  -KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 20/187 (10%)
Query: 73  SVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN 132
           S+  + D    + LH A   G   IV+FL          LQ GV   ++   G +     
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVPVNDKDDAGWS----- 75
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
            PLH A      ++ K L+     V  + N+N  TPL+ AA+    EI   +L+   +P 
Sbjct: 76  -PLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
            +     TA+H A      ++I  L  +   ++ T ++D  G TPLH A    R   +KL
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYY---KASTNIQDTEGNTPLHLACDEERVEEAKL 190
Query: 253 LLDHDKS 259
           L+    S
Sbjct: 191 LVSQGAS 197

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 151 IVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-GKTALHAAVYTY 209
           I+AD  +    ++++ T L+ A + G  EIV  +LQ    P ++  D G + LH A    
Sbjct: 26  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAG 84
Query: 210 PTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR- 268
             E++K L     K +     ++ G TPLH+AA   R   + +LL+     A    KD  
Sbjct: 85  RDEIVKALL---GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGANPDAKDHY 138
Query: 269 NMTALHLAAASGHIMVVDRIL 289
             TA+H AAA G++ ++  +L
Sbjct: 139 EATAMHRAAAKGNLKMIHILL 159

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 20/187 (10%)
Query: 73  SVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN 132
           S+  + D    + LH A   G   IV+FL          LQ GV   ++   G +     
Sbjct: 32  SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVPVNDKDDAGWS----- 76
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
            PLH A      ++ K L+     V  + N+N  TPL+ AA+    EI   +L+   +P 
Sbjct: 77  -PLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
            +     TA+H A      ++I  L  +   ++ T ++D  G TPLH A    R   +KL
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYY---KASTNIQDTEGNTPLHLACDEERVEEAKL 191
Query: 253 LLDHDKS 259
           L+    S
Sbjct: 192 LVSQGAS 198

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 151 IVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-GKTALHAAVYTY 209
           I+AD  +    ++++ T L+ A + G  EIV  +LQ    P ++  D G + LH A    
Sbjct: 27  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAG 85
Query: 210 PTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR- 268
             E++K L     K +     ++ G TPLH+AA   R   + +LL+     A    KD  
Sbjct: 86  RDEIVKALL---GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGANPDAKDHY 139
Query: 269 NMTALHLAAASGHIMVVDRIL 289
             TA+H AAA G++ ++  +L
Sbjct: 140 EATAMHRAAAKGNLKMIHILL 160

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
           +PLH A R     V ++LI+    +    NR ++TPL++AA++G  +IV K+LQ      
Sbjct: 36  SPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
                G   LH A +    +V + L  +    +L ++ +KYG  P+  A    REL
Sbjct: 95  AVNEHGNVPLHYACFWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLREL 147

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
           G T LH  V     E+I+ L  +    + +   DK GWTPLH AAY G     ++LL   
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNAS---DKSGWTPLHLAAYRGHLEIVEVLL--- 100
Query: 258 KSAAFIGGKD-RNMTALHLAAASGHIMVVDRIL 289
           K  A +   D +  T LHLAA  GH+ +V+ +L
Sbjct: 101 KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 5/165 (3%)
Query: 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK 187
           ++E  T LH A     +D+ K  I     V       N TPL+ A   G + +V ++++ 
Sbjct: 39  DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 188 CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRE 247
              P+    +G + +H A     T ++  L     K     + D+ G TPL  AAY    
Sbjct: 99  GADPSLIDGEGCSCIHLAAQFGHTSIVAYLI---AKGQDVDMMDQNGMTPLMWAAYRTHS 155
Query: 248 LT-SKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS 291
           +  ++LLL  + S   +G K    TALH A  +G+  V+  +L +
Sbjct: 156 VDPTRLLLTFNVSVN-LGDKYHKNTALHWAVLAGNTTVISLLLEA 199

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
           EA R    D  +IL+     V  + N +  TPL++AA+NG +EIV  +L+          
Sbjct: 20  EAARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNGADVNASDL 78
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
            G T LH A  T   E+++ L  H    +     D  G TPLH AA  G     ++LL H
Sbjct: 79  TGITPLHLAAATGHLEIVEVLLKHGADVN---AYDNDGHTPLHLAAKYGHLEIVEVLLKH 135

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
           +PLH A R     V ++LI+    +    NR ++TPL++AA++G  +IV K+LQ      
Sbjct: 41  SPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
                G   LH A +    +V + L  +    +L ++ +KYG  P+  A    REL
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLREL 152

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
           G T LH A +    E+++ L  H    +    RD  GWTPLH AA +G     ++LL   
Sbjct: 47  GSTPLHLAAWIGHPEIVEVLLKH---GADVNARDTDGWTPLHLAADNGHLEIVEVLL--- 100
Query: 258 KSAAFIGGKDR-NMTALHLAAASGHIMVVDRIL 289
           K  A +  +D   +T LHLAA  GH+ +V+ +L
Sbjct: 101 KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRIL 289
           D  GWTPLH AAY G     ++LL   K+ A +   D   +T LHLAA  GH+ VV+ +L
Sbjct: 44  DHVGWTPLHLAAYFGHLEIVEVLL---KNGADVNADDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 290 SSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSR 333
            +     A  D  G+  LH A  ++  L+   +++KH    N++
Sbjct: 101 KNGADVNAN-DHNGFTPLHLA-ANIGHLEIVEVLLKHGADVNAQ 142

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 54/133 (40%), Gaps = 3/133 (2%)
Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
           +G  N E +  L EA +   V+  K L                TPL+ AA    V +V  
Sbjct: 3   MGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 62
Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY 243
           +LQ       +   G   LH A      EV + L  H    ++  V D + +TPLH AA 
Sbjct: 63  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAA 119
Query: 244 SGRELTSKLLLDH 256
            G+    KLLL H
Sbjct: 120 KGKYEICKLLLQH 132

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 230 RDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRI 288
           RD  GWTPLH AA+ G     ++LL   K+ A +  KD   +T LHLAA  GH+ +V+ +
Sbjct: 43  RDFTGWTPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 289 LSSCDGCCAKVDERGWNFLHFA 310
           L +     A  D  G+  LH A
Sbjct: 100 LKNGADVNAS-DSHGFTPLHLA 120

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
           M N E +  L EA +   V+  K L                TPL+ AA    V +V  +L
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 186 QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSG 245
           Q       +   G   LH A      EV + L  H    ++  V D + +TPLH AA  G
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKG 119
Query: 246 RELTSKLLLDH 256
           +    KLLL H
Sbjct: 120 KYEICKLLLQH 130

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 163 RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEE 222
           ++  TPL+ AA NG  E V K+L K         DG T LH A      E++K L     
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA--- 63
Query: 223 KRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
           K +    R K G TP H A  +G     KLL
Sbjct: 64  KGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
           L EA R    D  +IL+     V  + + + +TPL++AA  G +EIV  +L+        
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
              G T LH A      E+++ L  +    + T   D YG+TPLH AA +G     ++LL
Sbjct: 77  DKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT---DTYGFTPLHLAADAGHLEIVEVLL 133
Query: 255 DHDKSAAFIGGKDR 268
              K  A +  +D+
Sbjct: 134 ---KYGADVNAQDK 144

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
           G T LH A  T   E+++ L  +          D YG TPLH AA +G     ++LL H 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGAD---VNAWDNYGATPLHLAADNGHLEIVEVLLKH- 102
Query: 258 KSAAFIGGKD-RNMTALHLAAASGHIMVVDRIL 289
              A +  KD    T LHLAA  GH+ +V+ +L
Sbjct: 103 --GADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 3/133 (2%)
Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
           + + N E +  L EA +   V+  K L                TPL+ AA    V +V  
Sbjct: 5   ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY 243
           +LQ       +   G   LH A      EV + L  H    ++  V D + +TPLH AA 
Sbjct: 65  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAA 121
Query: 244 SGRELTSKLLLDH 256
            G+    KLLL H
Sbjct: 122 KGKYEICKLLLQH 134

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRIL 289
           D  GWTPLH AAY G     ++LL   K+ A +   D    T LHLAA  GH+ +V+ +L
Sbjct: 44  DVVGWTPLHLAAYWGHLEIVEVLL---KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLL 100
Query: 290 SSCDGCCAKVDERGWNFLHFA 310
            +     AK D+ G   LH A
Sbjct: 101 KNGADVNAK-DDNGITPLHLA 120

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
           TPLH AV   ++ V +IL+        +   +  TPL +AA      +V  ++       
Sbjct: 86  TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN 145
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
                GKTALH A     TE +  L +H   R     +D    TPL  AA  G    SK 
Sbjct: 146 AADNSGKTALHWAAAVNNTEAVNILLMHHANRD---AQDDKDETPLFLAAREGSYEASKA 202
Query: 253 LLDH 256
           LLD+
Sbjct: 203 LLDN 206

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS- 190
           N PLH+A         + L+ + P +    +++   PL+ + +  + EI + +L K  + 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 191 PAHEGPD--GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
              + PD  G T  H A      EV+K L+    K  L  + ++ G T LH A       
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFE 121
Query: 249 TSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFL 307
            S+ L+++  S      KD+ N   LH AA+ G + +++ +           D++GW  L
Sbjct: 122 VSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 308 HFAM 311
             A+
Sbjct: 179 FHAL 182

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS- 190
           N PLH+A         + L+ + P +    +++   PL+ + +  + EI + +L K  + 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 191 PAHEGPD--GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
              + PD  G T  H A      EV+K L+    K  L  + ++ G T LH A       
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFE 121
Query: 249 TSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFL 307
            S+ L+++  S      KD+ N   LH AA+ G + +++ +           D++GW  L
Sbjct: 122 VSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 308 HFAM 311
             A+
Sbjct: 179 FHAL 182

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS- 190
           N PLH+A         + L+ + P +    +++   PL+ + +  + EI + +L K  + 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 191 PAHEGPD--GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
              + PD  G T  H A      EV+K L+    K  L  + ++ G T LH A       
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFE 121
Query: 249 TSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFL 307
            S+ L+++  S      KD+ N   LH AA+ G + +++ +           D++GW  L
Sbjct: 122 VSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 308 HFAM 311
             A+
Sbjct: 179 FHAL 182

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
           L EA R    D  +IL+     V  +A+    TPL++AA +G +EIV  +L+        
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
              G T LH A Y    E+++ L    +  +     D  G TPLH AA  G     ++LL
Sbjct: 77  DVFGYTPLHLAAYWGHLEIVEVLL---KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 255 DH 256
            H
Sbjct: 134 KH 135

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
           L EA R    D  +IL+ A+     + +    TPL+MAAA G +EIV  +L+        
Sbjct: 6   LLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
             +G T LH A      E+++ L  +    +    +D  G TPL+ AAY G     ++LL
Sbjct: 65  DTNGTTPLHLAASLGHLEIVEVLLKYGADVN---AKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 255 DH 256
            H
Sbjct: 122 KH 123

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
           +TPLH A R+  +++ ++L+     V  + + +  TPL++AA  G +EIV  +L+     
Sbjct: 48  DTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
             +   G T LH A  T   E+++ L  +    +    +DK+G T    +  +G E  ++
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN---AQDKFGKTAFDISIDNGNEDLAE 163
Query: 252 LL 253
           +L
Sbjct: 164 IL 165

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
           G+T LH A        ++ L    +  S   V+D  GWTPLH A   G     +LLL H 
Sbjct: 10  GETLLHIASIKGDIPSVEYLL---QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 258 KSAAFIGGKDRNMTALHLAAASGHIMVVDRILS 290
                 G   +N + LH AA +GH+ +V  +LS
Sbjct: 67  ALVNTTGY--QNDSPLHDAAKNGHVDIVKLLLS 97

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
           EA R    D  +IL+     V  + + +  TPL++AA  G +EIV  +L+          
Sbjct: 20  EAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
            G T LH A      E+++ L  H     + AV D +G TPLH AA  G     ++LL H
Sbjct: 79  XGSTPLHLAALIGHLEIVEVLLKH--GADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKH 135

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 20/140 (14%)
Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           Q    GDS LHLA    + A+   +I+  K             +   L   N  Q TPLH
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVK------------GDLAFLNFQNNLQQTPLH 50
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP----- 191
            AV     ++A+ L+ A         R N TPL++A   G +  V  + Q C +P     
Sbjct: 51  LAVITNQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQSCTTPHLHSI 109
Query: 192 -AHEGPDGKTALH-AAVYTY 209
                 +G T LH A+++ Y
Sbjct: 110 LKATNYNGHTCLHLASIHGY 129

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 172 AAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRD 231
           ++  G  ++V +I+ +   P+    +G TALH AV    TE++K  FL +   ++ A  D
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVK--FLVQFGVNVNAA-D 100
Query: 232 KYGWTPLHHAAYSGRELTSKLLLD 255
             GWTPLH AA        K L++
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVE 124

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 165 NETPLYM---AAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE 221
           N  PL +   ++  G  ++V +I+ +   P+    +G TALH AV    TE++K  FL +
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVK--FLVQ 91
Query: 222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLD 255
              ++ A  D  GWTPLH AA        K L++
Sbjct: 92  FGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVE 124

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 77/198 (38%), Gaps = 19/198 (9%)
Query: 130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP 189
           E N  L +AV+   VD+ + L+    +V +       TPL+ A      +IV  +L+   
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 190 SPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELT 249
            P     +G T    A      +++K LFL   K +     D YG+T    AA  G+   
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLK-LFL--SKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 250 SKLLL------------DHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA 297
            K L               D+     GG     TAL  AA  GH+ V+  +L        
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGG----ATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 298 KVDERGWNFLHFAMVSLD 315
             D  G N L  A++S D
Sbjct: 177 ACDNMGRNALIHALLSSD 194

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 20/135 (14%)
Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
           GDS LHLA    + A+   +I+  K             +   L   N  Q TPLH AV  
Sbjct: 5   GDSFLHLAIIHEEKALTMEVIRQVK------------GDLAFLNFQNNLQQTPLHLAVIT 52
Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP------AHEG 195
              ++A+ L+ A         R N TPL++A   G +  V  + Q C +P          
Sbjct: 53  NQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 111
Query: 196 PDGKTALH-AAVYTY 209
            +G T LH A+++ Y
Sbjct: 112 YNGHTCLHLASIHGY 126

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
           EA R    D  +IL+     V  + + +  TPL++AA  G +EIV  +L+          
Sbjct: 20  EAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
            G T LH A      E+++ L  H     + AV D +G TPLH AA  G     ++LL H
Sbjct: 79  MGSTPLHLAALIGHLEIVEVLLKH--GADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKH 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	547
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-38
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-37
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-35
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-29
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-24
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-28
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-27
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-33
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-33
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-29
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-23
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-18
2rfa_A	232	Transient receptor potential cation channel subfa	8e-31
2rfa_A	232	Transient receptor potential cation channel subfa	1e-25
2rfa_A	232	Transient receptor potential cation channel subfa	4e-23
2rfa_A	232	Transient receptor potential cation channel subfa	4e-16
2rfa_A	232	Transient receptor potential cation channel subfa	8e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-30
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-24
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-30
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-29
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-20
2pnn_A	273	Transient receptor potential cation channel subfa	6e-29
2pnn_A	273	Transient receptor potential cation channel subfa	2e-25
2pnn_A	273	Transient receptor potential cation channel subfa	4e-22
2pnn_A	273	Transient receptor potential cation channel subfa	2e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-27
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-27
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-26
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-21
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-26
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-26
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-25
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-25
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-19
2etb_A	256	Transient receptor potential cation channel subfam	6e-25
2etb_A	256	Transient receptor potential cation channel subfam	2e-24
2etb_A	256	Transient receptor potential cation channel subfam	9e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-05

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  144 bits (366), Expect = 3e-38
 Identities = 81/290 (27%), Positives = 119/290 (41%), Gaps = 63/290 (21%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
               G +PLH+A+  G   IVK L+          QRG          ++N +  TPLH 
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLL----------QRGAS------PNVSNVKVETPLHM 53

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           A R    +VAK L+   A  +   +  ++++TPL+ AA  G   +V  +L+   +P    
Sbjct: 54  AARAGHTEVAKYLLQNKAKVN---AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLD 255
             G T LH A      E +  L    EK +  A   K G+TPLH AA  G+   ++LLL+
Sbjct: 111 TAGHTPLHIAAREGHVETVLALL---EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167

Query: 256 HDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNFLHFAM 311
            D   A      +N +T LH+A    ++ +V  +L                G+  LH A 
Sbjct: 168 RD---AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR----GGSPHSPAWNGYTPLHIA- 219

Query: 312 VSLDLLQSSGLVIKHPTVRNS----RLLI-------AEDVNGNTPLHVVA 350
                             +N     R L+       AE V G TPLH+ A
Sbjct: 220 ----------------AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  143 bits (363), Expect = 8e-38
 Identities = 78/287 (27%), Positives = 111/287 (38%), Gaps = 57/287 (19%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
           ++ K ++PLH+AA+ G   + K+L++             K   +       ++  TPLH 
Sbjct: 43  SNVKVETPLHMAARAGHTEVAKYLLQ----------NKAKVNAK------AKDDQTPLHC 86

Query: 138 AVRLRSVDVAKILI--VADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           A R+   ++ K+L+   A+P++   A     TPL++AA  G VE V  +L+K  S A   
Sbjct: 87  AARIGHTNMVKLLLENNANPNL---ATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
             G T LH A       V + L                  K G TPLH A +       K
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-------GKNGLTPLHVAVHHNNLDIVK 196

Query: 252 LLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFA 310
           LLL              N  T LH+AA    + V  R L    G       +G   LH A
Sbjct: 197 LLLPRG---GSPHSPAWNGYTPLHIAAKQNQVEVA-RSLLQYGGSANAESVQGVTPLHLA 252

Query: 311 -------MVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
                  MV   LL S                   + +G TPLH+VA
Sbjct: 253 AQEGHAEMV--ALLLSKQANGN-----------LGNKSGLTPLHLVA 286

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  143 bits (363), Expect = 1e-37
 Identities = 69/285 (24%), Positives = 102/285 (35%), Gaps = 50/285 (17%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
            A   G +PLH+A    +  IVK L+           RG                 TPLH
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLP----------RGGS------PHSPAWNGYTPLH 217

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
            A +   V+VA+ L+      +     +    TPL++AA  G  E+VA +L K  +    
Sbjct: 218 IAAKQNQVEVARSLLQYGGSANAE---SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTS 250
              G T LH         V   L  H    +          + G+TPLH A++ G     
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-------TRMGYTPLHVASHYGNIKLV 327

Query: 251 KLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNF 306
           K LL H    A +  K +   + LH AA  GH  +V  +L +  G  A  +E    G   
Sbjct: 328 KFLLQHQ---ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN--G--ASPNEVSSDGTTP 380

Query: 307 LHFAMV--SLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVV 349
           L  A     + +     +V    +          D +  +    V
Sbjct: 381 LAIAKRLGYISVTDVLKVVTDETSFVL-----VSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (357), Expect = 6e-37
 Identities = 76/284 (26%), Positives = 115/284 (40%), Gaps = 55/284 (19%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
              KG +PLH+AAK G   + + L+          +R              +   TPLH 
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLL----------ERDAH------PNAAGKNGLTPLHV 185

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           AV   ++D+ K+L+     PH   S   N  TPL++AA    VE+   +LQ   S   E 
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLD 255
             G T LH A      E++  L     K++   + +K G TPLH  A  G    + +L+ 
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLL---SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299

Query: 256 HDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNFLHFA- 310
           H      +    R   T LH+A+  G+I +V  +L       A V+ +   G++ LH A 
Sbjct: 300 HG---VMVDATTRMGYTPLHVASHYGNIKLVKFLLQH--Q--ADVNAKTKLGYSPLHQAA 352

Query: 311 ------MVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHV 348
                 +V   LL  +G                   +G TPL +
Sbjct: 353 QQGHTDIV--TLLLKNGASPN-----------EVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  135 bits (343), Expect = 5e-35
 Identities = 69/280 (24%), Positives = 105/280 (37%), Gaps = 76/280 (27%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
           A   G +PLH+AA++G    V  L+          ++              ++  TPLH 
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALL----------EKEAS------QACMTKKGFTPLHV 152

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           A +   V VA++L+   A P+   +A +N  TPL++A  + +++IV  +L +  SP    
Sbjct: 153 AAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
            +G T LH A      EV + L  +      +          G TPLH AA  G      
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-------SVQGVTPLHLAAQEGHAEMVA 262

Query: 252 LLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFA 310
           LLL      A     +++ +T LHL A  GH+ V D ++         VD          
Sbjct: 263 LLLSKQ---ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK----HGVMVDAT-------- 307

Query: 311 MVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
                                          G TPLHV +
Sbjct: 308 ----------------------------TRMGYTPLHVAS 319

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  102 bits (257), Expect = 1e-23
 Identities = 61/206 (29%), Positives = 81/206 (39%), Gaps = 41/206 (19%)

Query: 160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFL 219
               +  TPL++A+  G + IV  +LQ+  SP       +T LH A     TEV K L  
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 220 HEEKRSLTA---VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHL 275
           ++      A    + K   TPLH AA  G     KLLL+++   A          T LH+
Sbjct: 69  NK------AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN---ANPNLATTAGHTPLHI 119

Query: 276 AAASGHIMVVDRILSSCDGCCAKVDER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRNS 332
           AA  GH+  V  +L       A        G+  LH A          G       V  +
Sbjct: 120 AAREGHVETVLALLEK--E--ASQACMTKKGFTPLHVAA-------KYG----KVRV--A 162

Query: 333 RLLI-------AEDVNGNTPLHVVAA 351
            LL+       A   NG TPLH VA 
Sbjct: 163 ELLLERDAHPNAAGKNGLTPLH-VAV 187

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.5 bits (249), Expect = 1e-22
 Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 38/199 (19%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           +  G +PLHL A++G   +   LI          + GV                TPLH A
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLI----------KHGVMVDAT------TRMGYTPLHVA 318

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
               ++ + K L+   AD +   +  +   +PL+ AA  G  +IV  +L+   SP     
Sbjct: 319 SHYGNIKLVKFLLQHQADVN---AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375

Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
           DG T L  A       V   L +  ++ S   V DK+  +            T   +LD 
Sbjct: 376 DGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDV 426

Query: 257 DKSAAFIGGKDRNMTALHL 275
                    +D     +  
Sbjct: 427 --------SEDEGEELISF 437

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  140 bits (355), Expect = 5e-38
 Identities = 60/304 (19%), Positives = 92/304 (30%), Gaps = 75/304 (24%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
              GD+ LHLA        + FL+                A  + L + N+   T LH A
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLL----------GFS---AGHEYLDLQNDLGQTALHLA 52

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
             L      + L    A   V   A R   T L++A    +      +LQ  PS   +  
Sbjct: 53  AILGEASTVEKLYAAGAGVLV---AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

Query: 197 DGKT--------------ALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPL 238
           D                 A   +      E   +        E +       +  G TPL
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-------NYDGHTPL 162

Query: 239 HHAAYSGRELTSKLLLDHDKSAAFIGGKDRNM--TALHLAAASGHIMVVDRILSSCDGCC 296
           H A         +LL D     A +   +     T LHLA  +    V++ +L +  G  
Sbjct: 163 HVAVIHKDAEMVRLLRDAG---ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA--G-- 215

Query: 297 AKVDER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLI-------AEDVNGNTPL 346
           A    R   G   L  A++             +P +  +RLL         +  +  +P 
Sbjct: 216 ADPTARMYGGRTPLGSALLR-----------PNPIL--ARLLRAHGAPEPEDGGDKLSPC 262

Query: 347 HVVA 350
               
Sbjct: 263 SSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  119 bits (302), Expect = 1e-30
 Identities = 50/250 (20%), Positives = 80/250 (32%), Gaps = 42/250 (16%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
            +  G + LHLAA  G+A+ V+ L             G                +T LH 
Sbjct: 41  QNDLGQTALHLAAILGEASTVEKLYA----------AGAGVLVA------ERGGHTALHL 84

Query: 138 AVRLRSVDVAKILI---------VADPHVPYSANRNNETP----LYMAAANGSVEIVAKI 184
           A R+R+   A +L+          +D ++  S +   +T        +  N   E   + 
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 185 LQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYS 244
                    E  DG T LH AV     E+++ L        L       G TPLH A  +
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA--GADLNKPEPTCGRTPLHLAVEA 202

Query: 245 GRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER- 302
                 +LLL      A    +     T L  A    + ++   + +      A   E  
Sbjct: 203 QAASVLELLLKAG---ADPTARMYGGRTPLGSALLRPNPILARLLRAH----GAPEPEDG 255

Query: 303 --GWNFLHFA 310
               +    +
Sbjct: 256 GDKLSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  117 bits (296), Expect = 7e-30
 Identities = 38/218 (17%), Positives = 66/218 (30%), Gaps = 25/218 (11%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
           A+  G + LHLA +         L++     PRD      +        T +  + P   
Sbjct: 74  AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS---QDCTPDTSHAPAAV 130

Query: 138 AVRLR-SVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP-AH 193
             +     +                  N +  TPL++A  +   E+V  +          
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEA---ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 194 EGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELT 249
           E   G+T LH AV      V++ L         +          G TPL  A      + 
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR-------MYGGRTPLGSALLRPNPIL 240

Query: 250 SKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVD 286
           ++LL  H    A       + ++    + +       D
Sbjct: 241 ARLLRAHG---APEPEDGGDKLSPCSSSGSDSDSDNRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  111 bits (280), Expect = 1e-27
 Identities = 43/257 (16%), Positives = 68/257 (26%), Gaps = 54/257 (21%)

Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV 181
            G   E+ +T LH AV  +       L+   A        N   +T L++AA  G    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 182 AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH------EEKRSLTA----VRD 231
            K+             G TALH A           L         +   +          
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 232 KYGWTPLHHAA-YSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRIL 289
                P    +  +          D       +  ++ +  T LH+A       +V  + 
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWR---LQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 290 SSCDGCCAKVDERGWNF----LHFAMVSLDLLQSSGLVIKHPTVRNS----RLLI----- 336
            +     A +++         LH A                     +     LL+     
Sbjct: 179 DA----GADLNKPEPTCGRTPLHLA-----------------VEAQAASVLELLLKAGAD 217

Query: 337 --AEDVNGNTPLHVVAA 351
             A    G TPL   A 
Sbjct: 218 PTARMYGGRTPLG-SAL 233

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  137 bits (347), Expect = 3e-37
 Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 48/251 (19%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           +AD  GD+PLH+A  +G+   V  L+   ++  R+            L + N  + TPLH
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE------------LDIYNNLRQTPLH 51

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
            AV      V ++L+   A P    + +R+ +T  ++A  + S   +  +L      A  
Sbjct: 52  LAVITTLPSVVRLLVTAGASPM---ALDRHGQTAAHLACEHRSPTCLRALLDSA---APG 105

Query: 195 GPD-------GKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAY 243
             D       G TALH AV T   E ++ L       +          K G +PL HA  
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI------KSGRSPLIHAVE 159

Query: 244 SGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER 302
           +      +LLL H    A +  +  +  +ALH A+  G + +V  ++ S  G  A    +
Sbjct: 160 NNSLSMVQLLLQHG---ANVNAQMYSGSSALHSASGRGLLPLVRTLVRS--G--ADSSLK 212

Query: 303 ---GWNFLHFA 310
                  L  A
Sbjct: 213 NCHNDTPLMVA 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  124 bits (314), Expect = 1e-32
 Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 35/221 (15%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           +    +PLHLA      ++V+ L+            G            +    T  H A
Sbjct: 43  NNLRQTPLHLAVITTLPSVVRLLVT----------AGASPMAL------DRHGQTAAHLA 86

Query: 139 VRLRSVDVAKILIVADPHVPY---SANRNNETPLYMAAANGSVEIVAKILQKCPSP-AHE 194
              RS    + L+ +         + N +  T L++A      E V  +L++     A +
Sbjct: 87  CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD 146

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTS 250
              G++ L  AV      +++ L  H      +          G + LH A+  G     
Sbjct: 147 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-------MYSGSSALHSASGRGLLPLV 199

Query: 251 KLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
           + L+      A    K+ +  T L +A +   I ++    +
Sbjct: 200 RTLVRSG---ADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  102 bits (258), Expect = 4e-25
 Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 27/184 (14%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D  G +  HLA +      ++ L+  A     DL+              N +  T LH A
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA------------RNYDGLTALHVA 123

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
           V     +  ++L+   AD        ++  +PL  A  N S+ +V  +LQ   +   +  
Sbjct: 124 VNTECQETVQLLLERGADIDA--VDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
            G +ALH+A       +++ L         K       + +  TPL  A         + 
Sbjct: 182 SGSSALHSASGRGLLPLVRTLVRSGADSSLK-------NCHNDTPLMVARSRRVIDILRG 234

Query: 253 LLDH 256
               
Sbjct: 235 KATR 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  136 bits (345), Expect = 1e-36
 Identities = 69/297 (23%), Positives = 103/297 (34%), Gaps = 60/297 (20%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           A  + +  L  A +  D  +V+ L++  A    ++                 E   TPLH
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE----------------EEGGWTPLH 44

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
            AV++   D+ ++L+   ADP       +N  TP  +AA  GSV+++   L K       
Sbjct: 45  NAVQMSREDIVELLLRHGADPV---LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLH-------EEKRSLTAVRDKYGWTPLHHAAYSGRE 247
              G TA   A      + +K L+          + +       K G T L  AA  G  
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 248 LTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRI---LSSCDGCCAKVDER- 302
              K+LLD     A +   D     AL  A  S     V+ I   L       A V+ R 
Sbjct: 162 EVLKILLDEMG--ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG---ADVNVRG 216

Query: 303 --GWNFLHFA-------MVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
             G   L  A       +V   LL+   + I              D +G T L +  
Sbjct: 217 ERGKTPLILAVEKKHLGLVQR-LLEQEHIEIN-----------DTDSDGKTALLLAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (301), Expect = 2e-30
 Identities = 47/238 (19%), Positives = 69/238 (28%), Gaps = 56/238 (23%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
               G +P  LAA  G   ++K  +           +G    E       +    T   E
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFL----------SKGADVNEC------DFYGFTAFME 111

Query: 138 AVRLRSVDVAKILIVA---------DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC 188
           A     V   K L                     +   T L  AA  G VE++ KIL   
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL-KILL-- 168

Query: 189 PSPAHEGPD-------GKTALHAAVY----TYPTEVIKQLFLH----EEKRSLTAVRDKY 233
                 G D       G+ AL  A+     +    +   L  H      +        + 
Sbjct: 169 ---DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-------GER 218

Query: 234 GWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
           G TPL  A         + LL+ +     I   D +  TAL LA       + + +  
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  106 bits (266), Expect = 1e-25
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 36/195 (18%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRG----VKSAERQMLGMTNEEQNT 133
            D  G +    AA  G    +KFL K          RG    ++   ++      +   T
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYK----------RGANVNLRRKTKEDQERLRKGGAT 150

Query: 134 PLHEAVRLRSVDVAKILIV---ADPHVPYSANRNNETPLYMAAANGS---VEIVAKIL-Q 186
            L +A     V+V KIL+    AD +   + +      L  A  +     VE +  +L  
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVN---ACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 187 KCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH-----EEKRSLTAVRDKYGWTPLHHA 241
                   G  GKT L  AV      ++++L         +        D  G T L  A
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT-------DSDGKTALLLA 260

Query: 242 AYSGRELTSKLLLDH 256
                +  ++LL   
Sbjct: 261 VELKLKKIAELLCKR 275

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  131 bits (331), Expect = 3e-35
 Identities = 49/227 (21%), Positives = 74/227 (32%), Gaps = 37/227 (16%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           Q    GDS LHLA    + A+   +I+  K     L               N  Q TPLH
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN------------FQNNLQQTPLH 50

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
            AV     ++A+ L+    DP +    +    TPL++A   G +  V  + Q C +P   
Sbjct: 51  LAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107

Query: 195 GP------DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYS 244
                   +G T LH A       +++ L         +          G T LH A   
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ------EPCNGRTALHLAVDL 161

Query: 245 GRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
                  LLL      A +        +   L        +  ++  
Sbjct: 162 QNPDLVSLLLKCG---ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 205

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  115 bits (291), Expect = 1e-29
 Identities = 39/215 (18%), Positives = 65/215 (30%), Gaps = 39/215 (18%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           +    +PLHLA       I + L+                 +     + +   NTPLH A
Sbjct: 42  NNLQQTPLHLAVITNQPEIAEALLG-------------AGCD---PELRDFRGNTPLHLA 85

Query: 139 VRLRSVDVAKILI--VADPHVPY---SANRNNETPLYMAAANGSVEIVAKIL--QKCPSP 191
                +    +L      PH+     + N N  T L++A+ +G + IV ++L        
Sbjct: 86  CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV-ELLVSLGADVN 144

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRE 247
           A E  +G+TALH AV     +++  L                    G++P          
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-------TYQGYSPYQLTWGRPST 197

Query: 248 LTSKLLLDHDKSAAFIGGKDRNM-TALHLAAASGH 281
              + L                          S  
Sbjct: 198 RIQQQLGQLT---LENLQMLPESEDEESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 98.8 bits (247), Expect = 1e-23
 Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 53/215 (24%)

Query: 162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-------GKTALHAAVYTYPTEVI 214
             + ++ L++A  +    +  +++++      +           +T LH AV T   E+ 
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKG---DLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 215 KQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH---DKSAAFIGGKD 267
           + L       E +       D  G TPLH A   G   +  +L          + +   +
Sbjct: 62  EALLGAGCDPELR-------DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114

Query: 268 RN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER----GWNFLHFAMVSLDLLQSSGL 322
            N  T LHLA+  G++ +V  +L S     A V+ +    G   LH A+     LQ+  L
Sbjct: 115 YNGHTCLHLASIHGYLGIV-ELLVSLG---ADVNAQEPCNGRTALHLAV----DLQNPDL 166

Query: 323 VIKHPTVRNSRLLI-------AEDVNGNTPLHVVA 350
           V          LL+            G +P  +  
Sbjct: 167 V---------SLLLKCGADVNRVTYQGYSPYQLTW 192

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 74.5 bits (184), Expect = 3e-15
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 20/137 (14%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           +  G + LHLA+  G   IV+ L+            G     +           T LH A
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLV----------SLGADVNAQ-----EPCNGRTALHLA 158

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
           V L++ D+  +L+   AD +          +P  +     S  I  ++ Q         P
Sbjct: 159 VDLQNPDLVSLLLKCGADVN---RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215

Query: 197 DGKTALHAAVYTYPTEV 213
           + +        +  TE 
Sbjct: 216 ESEDEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 21/107 (19%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           Q    G + LHLA    +  +V  L+K               A+   +     +  +P  
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLLLK-------------CGAD---VNRVTYQGYSPYQ 189

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV 181
                 S  + + L     +          +E        +   E  
Sbjct: 190 LTWGRPSTRIQQQLGQLTLENL---QMLPESEDEESYDTESEFTEFT 233

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  129 bits (328), Expect = 7e-35
 Identities = 50/242 (20%), Positives = 90/242 (37%), Gaps = 41/242 (16%)

Query: 82  GDSPLHLAAKKGD-AAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR 140
            + PLH A  + +   + + L            +     ++      +++   PLH +V 
Sbjct: 2   SNYPLHQACMENEFFKVQELLH----------SKPSLLLQK------DQDGRIPLHWSVS 45

Query: 141 LRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD- 197
            ++ ++   L+    + ++    + +  TP ++A + G++E+V  +  +   P       
Sbjct: 46  FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN 105

Query: 198 -GKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
            G T LH AV     EV + L  +      K       DK+   PLH AA  G     +L
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIK-------DKFNQIPLHRAASVGSLKLIEL 158

Query: 253 LLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNFLH 308
           L       + +  +D+   T L  A A GH      +L    G  A+ D     G     
Sbjct: 159 LCGLG--KSAVNWQDKQGWTPLFHALAEGHGDAA-VLLVEKYG--AEYDLVDNKGAKAED 213

Query: 309 FA 310
            A
Sbjct: 214 VA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  118 bits (299), Expect = 9e-31
 Identities = 43/209 (20%), Positives = 69/209 (33%), Gaps = 35/209 (16%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D  G  PLH +       I  FL+              K     +    ++   TP H A
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLS-------------KMENVNLDDYPDDSGWTPFHIA 79

Query: 139 VRLRSVDVAKILIV----ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
             + +++V K L       D +          T L++A      E+   +++   S   +
Sbjct: 80  CSVGNLEVVKSLYDRPLKPDLN---KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLH-----EEKRSLTAVRDKYGWTPLHHAAYSGRELT 249
               +  LH A      ++I+ L          +       DK GWTPL HA   G    
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ-------DKQGWTPLFHALAEGHGDA 189

Query: 250 SKLLLDHDKSAAFIGGKDRN-MTALHLAA 277
           + LL++     A     D     A  +A 
Sbjct: 190 AVLLVEKYG--AEYDLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  117 bits (296), Expect = 2e-30
 Identities = 48/241 (19%), Positives = 80/241 (33%), Gaps = 49/241 (20%)

Query: 132 NTPLHEAVRLRSVD-VAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV------- 181
           N PLH+A        V ++L    +        +++   PL+ + +  + EI        
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLL---QKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 182 AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA 241
             +        +    G T  H A      EV+K L+    K  L       G T LH A
Sbjct: 60  ENVNLD----DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLA 114

Query: 242 AYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVD 300
                   S+ L+++    A +  KD+     LH AA+ G + +++ +        + V+
Sbjct: 115 VGKKWFEVSQFLIENG---ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK---SAVN 168

Query: 301 ER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLI--------AEDVNGNTPLHVV 349
            +   GW  L  A     L +  G            LL+          D  G     V 
Sbjct: 169 WQDKQGWTPLFHA-----LAEGHGDAAV--------LLVEKYGAEYDLVDNKGAKAEDVA 215

Query: 350 A 350
            
Sbjct: 216 L 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  100 bits (252), Expect = 2e-24
 Identities = 48/196 (24%), Positives = 65/196 (33%), Gaps = 25/196 (12%)

Query: 165 NETPLYMAAANGSVEIVAKILQKCPSPAHEG-PDGKTALHAAVYTYPTEVIKQLFLHEEK 223
           +  PL+ A        V ++L   PS   +   DG+  LH +V     E+   L    E 
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 224 RSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHI 282
            +L    D  GWTP H A   G     K L D       +       +T LHLA      
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWF 120

Query: 283 MVVDRILSSCDGCCAKVDER---GWNFLHFAMV--SLD---LLQSSGLVIKHPTVRNSRL 334
            V   ++ +     A V  +       LH A    SL    LL   G    +        
Sbjct: 121 EVSQFLIEN----GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN-------- 168

Query: 335 LIAEDVNGNTPLHVVA 350
              +D  G TPL    
Sbjct: 169 --WQDKQGWTPLFHAL 182

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 97.1 bits (243), Expect = 3e-23
 Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 35/186 (18%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D  G +P H+A   G+  +VK L     K   +                  +  T LH A
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI--------------TNQGVTCLHLA 114

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG- 195
           V  +  +V++ LI   A        ++ N+ PL+ AA+ GS++++  +     S  +   
Sbjct: 115 VGKKWFEVSQFLIENGASVR---IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLH-----EEKRSLTAVRDKYGWTPLHHAAYSGRELTS 250
             G T L  A+     +    L        +         D  G      A         
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV-------DNKGAKAEDVALNEQ---VK 221

Query: 251 KLLLDH 256
           K  L++
Sbjct: 222 KFFLNN 227

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  133 bits (338), Expect = 8e-35
 Identities = 54/291 (18%), Positives = 84/291 (28%), Gaps = 59/291 (20%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
            +  G + LHLA K G     K+L             G   +              P+H 
Sbjct: 49  QNRFGCTALHLACKFGCVDTAKYLAS----------VGEVHSLW--------HGQKPIHL 90

Query: 138 AVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIV-AKILQKCPSPAHEGP 196
           AV     D+   L+         A    + P  +       E+       K         
Sbjct: 91  AVMANKTDLVVALVEG-------AKERGQMPESLLNECDEREVNEIGSHVK-------HC 136

Query: 197 DGKTALHAAVYTYP--TEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTS 250
            G+TALH  V   P   E+IK L         K       DK   TPL  A         
Sbjct: 137 KGQTALHWCVGLGPEYLEMIKILVQLGASPTAK-------DKADETPLMRAMEFRNREAL 189

Query: 251 KLLLDHDKSA--AFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCA-KVDERGWNF 306
            L++D   S     +   ++   + LH A       V  R +    G      D      
Sbjct: 190 DLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM--GIDVNMEDNEHTVP 247

Query: 307 LHFA-------MVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
           L+ +       +    L ++   +I+     N   ++ + V     +   A
Sbjct: 248 LYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA 298

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  128 bits (325), Expect = 4e-33
 Identities = 55/291 (18%), Positives = 93/291 (31%), Gaps = 72/291 (24%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
           +D +    +H+AA+KG    V+ LI          + GV    +      N    T LH 
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLI----------ETGVSPTIQ------NRFGCTALHL 59

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           A +   VD AK L            +  + + P+++A      ++V   L +        
Sbjct: 60  ACKFGCVDTAKYLASVGEVH-----SLWHGQKPIHLAVMANKTDLV-VALVE-----GAK 108

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL--TSKLL 253
             G+            EV +           + V+   G T LH     G E     K+L
Sbjct: 109 ERGQMPESLLNECDEREVNEI---------GSHVKHCKGQTALHWCVGLGPEYLEMIKIL 159

Query: 254 LDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDR-ILSSCDGCCAKVDER---GWNFLH 308
           +      A    KD+   T L  A    +   +D  + +       ++D     G + LH
Sbjct: 160 VQLG---ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH 216

Query: 309 FAMV--SLDLLQSSGLVIKHPTVRNSRLLI-------AEDVNGNTPLHVVA 350
           +A++    D       V            +        ED     PL++  
Sbjct: 217 WAILINWED-------VAM--------RFVEMGIDVNMEDNEHTVPLYLSV 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  126 bits (320), Expect = 2e-32
 Identities = 45/304 (14%), Positives = 92/304 (30%), Gaps = 62/304 (20%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQN----TPLH 136
           G  P+HLA       +V  L++   ++         +  ER++  + +  ++    T LH
Sbjct: 84  GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH 143

Query: 137 EAVRL--RSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
             V L    +++ KIL+   A P    + ++ +ETPL  A    + E +  ++       
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPT---AKDKADETPLMRAMEFRNREAL-DLMMDTVPSK 199

Query: 193 H------EGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAA 242
                      G + LH A+     +V  +          +       D     PL+ + 
Sbjct: 200 SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME-------DNEHTVPLYLSV 252

Query: 243 YSGRELTSKLLLDH-----DKSAAFIGGKDRNM------TALHLAAASGHIMVVDRILSS 291
            +   L +K LL        ++  +  G             +  AA      V+  +   
Sbjct: 253 RAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312

Query: 292 CDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLI-------AEDVNGNT 344
            D         G              +++  V +        + +           +   
Sbjct: 313 LDEVVRS-LNTGAGGAVKR-----KKKAAPAVKR--------MKLAPSAPVRTRSRSRAR 358

Query: 345 PLHV 348
              V
Sbjct: 359 SSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  102 bits (257), Expect = 6e-24
 Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 38/198 (19%)

Query: 160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFL 219
            ++  N   +++AA  G  + V ++++   SP  +   G TALH A      +  K L  
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 220 HEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAAS 279
             E          +G  P+H A  + +      L++          K+R      L    
Sbjct: 75  VGEV-----HSLWHGQKPIHLAVMANKTDLVVALVEG--------AKERGQMPESLLNEC 121

Query: 280 GHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLI--- 336
               V +           K   +G   LH+           GL  ++  +   ++L+   
Sbjct: 122 DEREVNEIGSH------VK-HCKGQTALHWC---------VGLGPEYLEM--IKILVQLG 163

Query: 337 ----AEDVNGNTPLHVVA 350
               A+D    TPL    
Sbjct: 164 ASPTAKDKADETPLMRAM 181

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 25/176 (14%), Positives = 45/176 (25%), Gaps = 46/176 (26%)

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
           +    +H A     T+ +++L         +       +++G T LH A   G   T+K 
Sbjct: 19  ENMEKIHVAARKGQTDEVRRLIETGVSPTIQ-------NRFGCTALHLACKFGCVDTAKY 71

Query: 253 LLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMV 312
           L                   +HLA  +    +V  ++           ERG         
Sbjct: 72  LASVG---EVHSLWH-GQKPIHLAVMANKTDLVVALVE-------GAKERGQMPESLL-- 118

Query: 313 SLDLLQSSGLVIKHPTVRNSRLLIAE------DVNGNTPLHVVAAVCRLSHRVAGL 362
                                  + E         G T LH    +      +  +
Sbjct: 119 ----------------NECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI 158

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 82.6 bits (205), Expect = 3e-17
 Identities = 22/175 (12%), Positives = 44/175 (25%), Gaps = 31/175 (17%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           + +G+S LH A       +    +          + G+       + M + E   PL+ +
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFV----------EMGID------VNMEDNEHTVPLYLS 251

Query: 139 VRLRSVDVAKILI--VADPHV----------PYSANRNNETPLYMAAANGSVEIVAKILQ 186
           VR   V + K L+       +                     +  AA     E++  + +
Sbjct: 252 VRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE 311

Query: 187 KCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA 241
           K          G              V +              R +        +
Sbjct: 312 KLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP---VRTRSRSRARSSAVS 363

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  133 bits (336), Expect = 9e-35
 Identities = 65/303 (21%), Positives = 98/303 (32%), Gaps = 82/303 (27%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
            D  G  PLH A   G   + + L+K               A    +   +  Q TPLHE
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLK-------------HGAC---VNAMDLWQFTPLHE 130

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           A     V+V  +L+   ADP      N + ++ + MA      E +              
Sbjct: 131 AASKNRVEVCSLLLSHGADPT---LVNCHGKSAVDMAPTPELRERLTYEF---------- 177

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSG---RELTSKL 252
             G + L AA      +V K L L          + +   T LH A  S    R+  ++L
Sbjct: 178 -KGHSLLQAAREADLAKVKKTLALEIIN----FKQPQSHETALHCAVASLHPKRKQVAEL 232

Query: 253 LLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNFLH 308
           LL      A +  K+++ MT LH+AA   H  V++ +        AK++     G   LH
Sbjct: 233 LLRKG---ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH----GAKMNALDSLGQTALH 285

Query: 309 FAMVSLDLLQSSGLVIKHPTVRNSRLLIAE------------DVNGNTPLHVVAAVCR-- 354
            A                       L                 + G T   +     +  
Sbjct: 286 RA------------------ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQI 327

Query: 355 LSH 357
           LS 
Sbjct: 328 LSE 330

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  124 bits (313), Expect = 2e-31
 Identities = 53/300 (17%), Positives = 89/300 (29%), Gaps = 64/300 (21%)

Query: 64  VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQM 123
              + D S   +   + K D  L  A    +  ++  L              V       
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP----------LNVN------ 50

Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV 181
              ++  ++TPLH A     V + ++L+   AD H     ++    PL+ A + G  E+ 
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA---KDKGGLVPLHNACSYGHYEVT 107

Query: 182 AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTP 237
             +L+             T LH A      EV   L  H              + +G + 
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV-------NCHGKSA 160

Query: 238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA 297
           +  A                              +L  AA    +  V + L+  +    
Sbjct: 161 VDMAPTPELRERLTYEFKG--------------HSLLQAAREADLAKVKKTLAL-EIINF 205

Query: 298 KVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLI-------AEDVNGNTPLHVVA 350
           K  +     LH A     L      V +        LL+        ++ +  TPLHV A
Sbjct: 206 KQPQSHETALHCA--VASLHPKRKQVAE--------LLLRKGANVNEKNKDFMTPLHVAA 255

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  121 bits (307), Expect = 9e-31
 Identities = 63/286 (22%), Positives = 95/286 (33%), Gaps = 66/286 (23%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D +  +PLHLAA      IV+ L+          Q G        +   ++    PLH A
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLL----------QHGAD------VHAKDKGGLVPLHNA 98

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
                 +V ++L+   A  +     +    TPL+ AA+   VE+ + +L     P     
Sbjct: 99  CSYGHYEVTELLLKHGACVNA---MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155

Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
            GK+A+  A      E +   F               G + L  A  +      K L   
Sbjct: 156 HGKSAVDMAPTPELRERLTYEF--------------KGHSLLQAAREADLAKVKKTLALE 201

Query: 257 DKSAAFIGGKDRNMTALHLAAASGHIMVVD--RILSSCDGCCAKVDER---GWNFLHFA- 310
                       + TALH A AS H        +L       A V+E+       LH A 
Sbjct: 202 ---IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG---ANVNEKNKDFMTPLHVAA 255

Query: 311 ------MVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
                 ++  ++L   G  +            A D  G T LH  A
Sbjct: 256 ERAHNDVM--EVLHKHGAKMN-----------ALDSLGQTALHRAA 288

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (288), Expect = 4e-28
 Identities = 50/233 (21%), Positives = 77/233 (33%), Gaps = 40/233 (17%)

Query: 127 TNEEQNTPLHEAVRLR-SVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
           T E +   L EA R      +  +L     + H   +++    TPL++AA    V IV  
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNCH---ASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLH 239
           +LQ       +   G   LH A      EV + L  H              D + +TPLH
Sbjct: 77  LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM-------DLWQFTPLH 129

Query: 240 HAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAK 298
            AA   R     LLL H    A     + +  +A+ +A        +             
Sbjct: 130 EAASKNRVEVCSLLLSHG---ADPTLVNCHGKSAVDMAPTPELRERL------------T 174

Query: 299 VDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAA 351
            + +G + L  A    DL +    +              +  +  T LH   A
Sbjct: 175 YEFKGHSLLQAA-READLAKVKKTLALEIIN------FKQPQSHETALHCAVA 220

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  103 bits (260), Expect = 2e-24
 Identities = 34/224 (15%), Positives = 70/224 (31%), Gaps = 47/224 (20%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIK------FAKKQPRD------LQRGVKSAERQMLG 125
            +  G S + +A        + +  K       A++              +   +     
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ----- 207

Query: 126 MTNEEQNTPLHEAVR---LRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEI 180
              +   T LH AV     +   VA++L+   A+ +     N++  TPL++AA     ++
Sbjct: 208 --PQSHETALHCAVASLHPKRKQVAELLLRKGANVN---EKNKDFMTPLHVAAERAHNDV 262

Query: 181 VAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWT 236
           +  + +           G+TALH A      +  + L  +                 G+T
Sbjct: 263 MEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII-------SLQGFT 315

Query: 237 PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASG 280
                         + +L        +   D +   L  A+ +G
Sbjct: 316 AAQMGN-----EAVQQILSES---TPMRTSDVD-YRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 45/131 (34%)

Query: 232 KYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS 291
           ++G + L              L D   SA  +   +     L  AA SG+   +  +L+ 
Sbjct: 2   EFGKSALD-------------LADP--SAKAVLTGEYKKDELLEAARSGNEEKLMALLTP 46

Query: 292 CDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAE-------DVN--- 341
            +  C   D R    LH A                     +R+ I +       DV+   
Sbjct: 47  LNVNCHASDGRKSTPLHLA------------------AGYNRVRIVQLLLQHGADVHAKD 88

Query: 342 --GNTPLHVVA 350
             G  PLH   
Sbjct: 89  KGGLVPLHNAC 99

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  129 bits (326), Expect = 2e-34
 Identities = 55/244 (22%), Positives = 84/244 (34%), Gaps = 46/244 (18%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
                SPLH AA+ G   I   L+          Q G        +   +E+Q TPL EA
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLV----------QAGAN------IDTCSEDQRTPLMEA 51

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL--QKCPSPAHE 194
                ++  K LI   A        +    T L++AA  G  E+V + L          +
Sbjct: 52  AENNHLEAVKYLIKAGALVD---PKDAEGSTCLHLAAKKGHYEVV-QYLLSNGQMDVNCQ 107

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTS 250
              G T +  A      +++K L         +       D      LH AA+SG    +
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-------DNEENICLHWAAFSGCVDIA 160

Query: 251 KLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNF 306
           ++LL        +   + +  + LH+AA       V   LS      + V  +   G   
Sbjct: 161 EILLAAK---CDLHAVNIHGDSPLHIAARENRYDCVVLFLSR----DSDVTLKNKEGETP 213

Query: 307 LHFA 310
           L  A
Sbjct: 214 LQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  126 bits (319), Expect = 2e-33
 Identities = 42/218 (19%), Positives = 75/218 (34%), Gaps = 31/218 (14%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
                 +PL  AA+      VK+LIK           G     +      + E +T LH 
Sbjct: 40  CSEDQRTPLMEAAENNHLEAVKYLIK----------AGALVDPK------DAEGSTCLHL 83

Query: 138 AVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD 197
           A +    +V + L+          +    TP+  A     V++V  +L K         +
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143

Query: 198 GKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
               LH A ++   ++ + L                 + +G +PLH AA   R     L 
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAV-------NIHGDSPLHIAARENRYDCVVLF 196

Query: 254 LDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
           L  D   + +  K++   T L  A+ +  +    ++  
Sbjct: 197 LSRD---SDVTLKNKEGETPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  120 bits (303), Expect = 3e-31
 Identities = 56/242 (23%), Positives = 90/242 (37%), Gaps = 46/242 (19%)

Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
           M ++ + +PLH A     VD+  +L+   A+     + + +  TPL  AA N  +E V  
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANID---TCSEDQRTPLMEAAENNHLEAVKY 62

Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH-----EEKRSLTAVRDKYGWTPL 238
           +++       +  +G T LH A      EV++ L  +       +       D  GWTP+
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ-------DDGGWTPM 115

Query: 239 HHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCA 297
             A         KLLL      + I  +D      LH AA SG + +   IL +      
Sbjct: 116 IWATEYKHVDLVKLLLSKG---SDINIRDNEENICLHWAAFSGCVDIA-EILLAAKCDLH 171

Query: 298 KVDERGWNFLHFAMV--SLDLLQSSGLVIKHPTVRNSRLLI-------AEDVNGNTPLHV 348
            V+  G + LH A      D        +         L +        ++  G TPL  
Sbjct: 172 AVNIHGDSPLHIAARENRYD-------CVV--------LFLSRDSDVTLKNKEGETPLQC 216

Query: 349 VA 350
            +
Sbjct: 217 AS 218

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  106 bits (267), Expect = 3e-26
 Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 31/190 (16%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
            DA+G + LHLAAKKG   +V++L+            G      Q     ++   TP+  
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLS----------NGQMDVNCQ-----DDGGWTPMIW 117

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           A   + VD+ K+L+   +D ++    +      L+ AA +G V+I   +L          
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINI---RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
             G + LH A      + +            K       +K G TPL  A+ + +  ++ 
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-------NKEGETPLQCASLNSQVWSAL 227

Query: 252 LLLDHDKSAA 261
            +    + +A
Sbjct: 228 QMSKALQDSA 237

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  130 bits (330), Expect = 1e-33
 Identities = 55/346 (15%), Positives = 111/346 (32%), Gaps = 72/346 (20%)

Query: 31  DLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAA 90
               N + + ++  +          +         ++   +     + + +    LH  A
Sbjct: 51  KRQRNELQHYSLYPNPQGYGNGNDFLGDF---NHTNLQIPT-----EPEPESPIKLHTEA 102

Query: 91  KKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKIL 150
             G  AI + + +            V   +            T LH      S + ++ L
Sbjct: 103 A-GSYAITEPITR----------ESVNIID-------PRHNRTVLHWIASNSSAEKSEDL 144

Query: 151 IVADPHVPYSA-------NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALH 203
           IV +     +A       + +  TPL +A       +VA +++    P       ++ALH
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALH 204

Query: 204 AAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRE---LTSKLLLDH---- 256
            A       ++  +    + +      D+ G T L   A++       ++KLL++     
Sbjct: 205 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

Query: 257 -DKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNFLHFAM 311
               AA    +     TALH AA   ++ +V + L    G  +  D++   G   +  A 
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIV-KYLVGEKG--SNKDKQDEDGKTPIMLAA 321

Query: 312 V--SLDLLQSSGLVIKHPTVRNSRLLI-------AEDVNGNTPLHV 348
               ++       V+          LI       A D   +T   +
Sbjct: 322 QEGRIE-------VVM--------YLIQQGASVEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  130 bits (329), Expect = 1e-33
 Identities = 53/302 (17%), Positives = 83/302 (27%), Gaps = 68/302 (22%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
                 P       G+  +  F                   E         E    LH  
Sbjct: 58  QHYSLYPNPQGYGNGNDFLGDFNHT----------NLQIPTEP------EPESPIKLHTE 101

Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIV-AKILQKCPSPAHEGPD 197
               S  + + +     ++     R+N T L+  A+N S E     I+ +       G D
Sbjct: 102 AA-GSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158

Query: 198 -------GKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGR 246
                    T L  AV      ++  L                 +K   + LH AA +  
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-------NKSERSALHQAAANRD 211

Query: 247 ELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDR----------ILSSCDGC 295
                 +L+  K    I   DRN MTAL + A +     V            +       
Sbjct: 212 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 271

Query: 296 CAKVDERGWNFLHFA-------MVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHV 348
                 +G   LH+A       +V   L+   G                +D +G TP+ +
Sbjct: 272 KDSEKYKGRTALHYAAQVSNMPIVKY-LVGEKGSNKD-----------KQDEDGKTPIML 319

Query: 349 VA 350
            A
Sbjct: 320 AA 321

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  128 bits (323), Expect = 8e-33
 Identities = 51/244 (20%), Positives = 84/244 (34%), Gaps = 55/244 (22%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D   ++PL LA       +V +L+K               A+     + N+ + + LH+A
Sbjct: 163 DCDENTPLMLAVLARRRRLVAYLMK-------------AGAD---PTIYNKSERSALHQA 206

Query: 139 VRLRSVDVAKILIVADPHVPYSAN-----RNNETPLYMAAANGSVEIV----------AK 183
              R   +   ++          +     RN  T L + A N   + V          AK
Sbjct: 207 AANRDFGMMVYML---NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263

Query: 184 ILQKCPSPAHEG-PDGKTALHAAVYTYPTEVIKQLFLH-----EEKRSLTAVRDKYGWTP 237
           +     +        G+TALH A       ++K L        +++       D+ G TP
Sbjct: 264 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ-------DEDGKTP 316

Query: 238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCC 296
           +  AA  GR      L+      A +   D    TA  LA A+ H  +V  I   C    
Sbjct: 317 IMLAAQEGRIEVVMYLIQQG---ASVEAVDATDHTARQLAQANNHHNIV-DIFDRCR--- 369

Query: 297 AKVD 300
            + +
Sbjct: 370 PERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  124 bits (314), Expect = 1e-31
 Identities = 53/250 (21%), Positives = 85/250 (34%), Gaps = 34/250 (13%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
                 + LH  A    A   + LI    K+   +  G        +   + ++NTPL  
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC--IAAGAD------VNAMDCDENTPLML 172

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH-- 193
           AV  R   +   L+   ADP      N++  + L+ AAAN    ++  +L          
Sbjct: 173 AVLARRRRLVAYLMKAGADPT---IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE 229

Query: 194 -EGPDGKTALHAAVYTYPTEVI---KQLFLH-----EEKRSLTAVRDKYGWTPLHHAAYS 244
               +G TAL    +    + +   K L         +  +        G T LH+AA  
Sbjct: 230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289

Query: 245 GRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER- 302
                 K L+      +    +D +  T + LAA  G I VV  ++    G  A V+   
Sbjct: 290 SNMPIVKYLVGE--KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ--G--ASVEAVD 343

Query: 303 --GWNFLHFA 310
                    A
Sbjct: 344 ATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 29/150 (19%)

Query: 202 LHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAA 261
           ++A+V+  P E        EEK              L  A+Y G     +  L H     
Sbjct: 12  INASVWMPPMEN-------EEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYS--- 61

Query: 262 FIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMV-SLDLLQSS 320
                   +        +G+  + D    +      + +      LH     S  + +  
Sbjct: 62  --------LYPNPQGYGNGNDFLGD-FNHTNLQIPTEPEPESPIKLHTEAAGSYAITE-- 110

Query: 321 GLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
             + +        + I +  +  T LH +A
Sbjct: 111 -PITRE------SVNIIDPRHNRTVLHWIA 133

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  125 bits (318), Expect = 2e-33
 Identities = 50/232 (21%), Positives = 82/232 (35%), Gaps = 31/232 (13%)

Query: 64  VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQM 123
           +   +    S+  Q D  G++ LHLAA+   +   K L+          +    +  +  
Sbjct: 7   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL----------EASADANIQ-- 54

Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
               +    TPLH AV   +  V +ILI        +   +  TPL +AA      ++  
Sbjct: 55  ----DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 110

Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLH 239
           ++            GK+ALH A      +    L  +    + +       +    TPL 
Sbjct: 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-------NNREETPLF 163

Query: 240 HAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
            AA  G   T+K+LLDH    A     D        +A    H  +V  +  
Sbjct: 164 LAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  110 bits (277), Expect = 7e-28
 Identities = 44/233 (18%), Positives = 65/233 (27%), Gaps = 63/233 (27%)

Query: 127 TNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKI 184
           T+    T LH A R    D AK L+   AD +     +    TPL+ A +  +  +  +I
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADAN---IQDNMGRTPLHAAVSADAQGVF-QI 76

Query: 185 L--QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPL 238
           L   +         DG T L  A       +++ L                 D  G + L
Sbjct: 77  LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-------DDLGKSAL 129

Query: 239 HHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCA 297
           H AA       + +LL +    A    ++    T L LAA  G       +L       A
Sbjct: 130 HWAAAVNNVDAAVVLLKNG---ANKDMQNNREETPLFLAAREGSYETAKVLLDH--F--A 182

Query: 298 KVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
             D                                      D     P  +  
Sbjct: 183 NRDIT------------------------------------DHMDRLPRDIAQ 199

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  109 bits (275), Expect = 2e-27
 Identities = 41/202 (20%), Positives = 65/202 (32%), Gaps = 40/202 (19%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D  G +PLH A       + + LI+          R      R        +  TPL  A
Sbjct: 55  DNMGRTPLHAAVSADAQGVFQILIR---------NRATDLDAR------MHDGTTPLILA 99

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
            RL    + + LI   AD +     +   ++ L+ AAA  +V+    +L+   +   +  
Sbjct: 100 ARLAVEGMLEDLINSHADVNA---VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
             +T L  A      E  K L  H    +         D     P   A         +L
Sbjct: 157 REETPLFLAAREGSYETAKVLLDHFANRDIT-------DHMDRLPRDIAQERMHHDIVRL 209

Query: 253 LLDHDKSAAFIGGKDRNMTALH 274
           L ++           R+   LH
Sbjct: 210 LDEY--------NLVRS-PQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.7 bits (146), Expect = 3e-10
 Identities = 29/140 (20%), Positives = 39/140 (27%), Gaps = 45/140 (32%)

Query: 212 EVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-M 270
            VI          SL    D+ G T LH AA   R   +K LL+     A    +D    
Sbjct: 5   AVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS---ADANIQDNMGR 59

Query: 271 TALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVR 330
           T LH A ++    V                               +L  +          
Sbjct: 60  TPLHAAVSADAQGVFQ-----------------------------ILIRNRATDLD---- 86

Query: 331 NSRLLIAEDVNGNTPLHVVA 350
                 A   +G TPL + A
Sbjct: 87  ------ARMHDGTTPLILAA 100

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  126 bits (318), Expect = 2e-33
 Identities = 50/224 (22%), Positives = 83/224 (37%), Gaps = 39/224 (17%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPL 135
           Q D +  + LH AA      +VK+ I   A                       +  +TPL
Sbjct: 37  QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG----------------GDLNSTPL 80

Query: 136 HEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH 193
           H A R   + +   L+   ADP +    +    + +++AA  G   IVA ++ K      
Sbjct: 81  HWATRQGHLSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137

Query: 194 EGPDGKTALH-AAVYTYPTEVIKQLFLH----EEKRSLTAVRDKY-GWTPLHHAAYSGRE 247
              +G T L  AA  T+  +  + L                 DKY   T LH A  +G  
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG-------DKYHKNTALHWAVLAGNT 190

Query: 248 LTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
               LLL+     A +  ++    +AL LA    ++ +++ +  
Sbjct: 191 TVISLLLEAG---ANVDAQNIKGESALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  125 bits (317), Expect = 4e-33
 Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 44/246 (17%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
             D      +  A + G     + L+          + G        +   ++E  T LH
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELV----------EAGYD------VRQPDKENVTLLH 47

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
            A     +D+ K  I   A           N TPL+ A   G + +V ++++    P+  
Sbjct: 48  WAAINNRIDLVKYYISKGAIVDQL--GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGREL-T 249
             +G + +H A     T ++  L       +         D+ G TPL  AAY    +  
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-------DQNGMTPLMWAAYRTHSVDP 158

Query: 250 SKLLLDHDKSAAFIGGKDRN--MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GW 304
           ++LLL  +     +   D+    TALH A  +G+  V+  +L +     A VD +   G 
Sbjct: 159 TRLLLTFN---VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA----GANVDAQNIKGE 211

Query: 305 NFLHFA 310
           + L  A
Sbjct: 212 SALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 97.5 bits (244), Expect = 3e-23
 Identities = 38/183 (20%), Positives = 61/183 (33%), Gaps = 34/183 (18%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
             +PLH A ++G  ++V  L+          + G   +        + E  + +H A + 
Sbjct: 76  NSTPLHWATRQGHLSMVVQLM----------KYGADPSLI------DGEGCSCIHLAAQF 119

Query: 142 RSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANG-SVEIVAKILQKCPSP-AHEGPD 197
               +   LI    D       ++N  TPL  AA    SV+    +L    S    +   
Sbjct: 120 GHTSIVAYLIAKGQDVD---MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYH 176

Query: 198 GKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
             TALH AV    T VI  L       + +       +  G + L  A           L
Sbjct: 177 KNTALHWAVLAGNTTVISLLLEAGANVDAQ-------NIKGESALDLAKQRKNVWMINHL 229

Query: 254 LDH 256
            + 
Sbjct: 230 QEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 84.8 bits (211), Expect = 1e-18
 Identities = 36/174 (20%), Positives = 49/174 (28%), Gaps = 51/174 (29%)

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
                +  A      E  ++L        +        DK   T LH AA + R    K 
Sbjct: 8   YSTWDIVKATQYGIYERCRELVEAGYDVRQP-------DKENVTLLHWAAINNRIDLVKY 60

Query: 253 LLDH--DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNFL 307
            +            G D N T LH A   GH+ +V +++    G  A        G + +
Sbjct: 61  YISKGAIVDQL---GGDLNSTPLHWATRQGHLSMVVQLMKY--G--ADPSLIDGEGCSCI 113

Query: 308 HFAMVSLDLLQSSGLVIKHPTVRNS----RLLI-------AEDVNGNTPLHVVA 350
           H A                            LI         D NG TPL   A
Sbjct: 114 HLA-----------------AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 67.5 bits (166), Expect = 7e-13
 Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 40/137 (29%)

Query: 230 RDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRI 288
            D Y    +  A   G     + L++       +   D+  +T LH AA +  I +V   
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAG---YDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 289 LSSCDGCCAKVDERGWNF----LHFAMVSLDLLQSSGLVIKHPTVRNS----RLLI---- 336
           +S   G  A VD+ G +     LH+A                 T +        L+    
Sbjct: 62  ISK--G--AIVDQLGGDLNSTPLHWA-----------------TRQGHLSMVVQLMKYGA 100

Query: 337 ---AEDVNGNTPLHVVA 350
                D  G + +H+ A
Sbjct: 101 DPSLIDGEGCSCIHLAA 117

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  125 bits (317), Expect = 1e-32
 Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 36/214 (16%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
             A   SPLH A   G  + VK L+          + G +            + +TPL  
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILL----------KHGAQVNGV------TADWHTPLFN 131

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           A    S D   +L+   A          +  +P++ AA  G VE V  ++    +  H+ 
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLHE---EKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
               T L+ A        +K+L        +        K   +PLH    +  E  + L
Sbjct: 188 SHLGTPLYLACENQQRACVKKLLESGADVNQ-------GKGQDSPLHAVVRTASEELACL 240

Query: 253 LLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVV 285
           L+D     A    K+      + L      +  +
Sbjct: 241 LMDFG---ADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  125 bits (316), Expect = 2e-32
 Identities = 45/238 (18%), Positives = 78/238 (32%), Gaps = 37/238 (15%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
                SP+H AA  G    ++ LI              +      + +   +  +PLHEA
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLIS-------------QGWA---VNIITADHVSPLHEA 99

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
                +   KIL+   A  +       +  TPL+ A  +GS + V  +LQ   S      
Sbjct: 100 CLGGHLSCVKILLKHGAQVNG---VTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPES 155

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
           D  + +H A      E +  L  +    + K         +  TPL+ A  + +    K 
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYGGNIDHK-------ISHLGTPLYLACENQQRACVKK 208

Query: 253 LLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFA 310
           LL+     A +       + LH    +    +   +L          +  G   +   
Sbjct: 209 LLESG---ADVNQGKGQDSPLHAVVRTASEELA-CLLMDFGADTQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  117 bits (295), Expect = 1e-29
 Identities = 46/279 (16%), Positives = 84/279 (30%), Gaps = 65/279 (23%)

Query: 88  LAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDV 146
           + +          L+   +     D ++               + + P          D 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQ------------GGMDGSKPAGPR------DF 42

Query: 147 AKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV 206
             I ++++P +      ++ +P++ AA +G    +  ++ +  +      D  + LH A 
Sbjct: 43  PGIRLLSNPLM--GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEAC 100

Query: 207 YTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAF 262
                  +K L  H                   TPL +A  SG      LLL H    A 
Sbjct: 101 LGGHLSCVKILLKHGAQVNGV-------TADWHTPLFNACVSGSWDCVNLLLQHG---AS 150

Query: 263 IGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGL 322
           +  +    + +H AA  GH+  V   L +  G            L+ A            
Sbjct: 151 VQPESDLASPIHEAARRGHVECV-NSLIAYGGNIDHKISHLGTPLYLA------------ 197

Query: 323 VIKHPTVRNSRLLIAE-------DVN----GNTPLHVVA 350
                   N +    +       DVN     ++PLH V 
Sbjct: 198 ------CENQQRACVKKLLESGADVNQGKGQDSPLHAVV 230

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.3 bits (207), Expect = 7e-18
 Identities = 28/182 (15%), Positives = 48/182 (26%), Gaps = 59/182 (32%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           Q ++   SP+H AA++G    V  LI            G     +           TPL+
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLI----------AYGGNIDHK------ISHLGTPLY 195

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
            A   +     K L+   AD +      +  ++PL+      S E+   ++         
Sbjct: 196 LACENQQRACVKKLLESGADVN----QGKGQDSPLHAVVRTASEELACLLMDF------- 244

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
                    A                         ++  G  P+         L    L 
Sbjct: 245 --------GADTQ---------------------AKNAEGKRPVELVPPES-PLAQLFLE 274

Query: 255 DH 256
             
Sbjct: 275 RE 276

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  121 bits (306), Expect = 2e-31
 Identities = 51/214 (23%), Positives = 79/214 (36%), Gaps = 31/214 (14%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           Q D  G++ LHLAA+   +   K L++              SA+     + +    TPLH
Sbjct: 52  QTDRTGETALHLAARYSRSDAAKRLLE-------------ASAD---ANIQDNMGRTPLH 95

Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
            AV   +  V +ILI        +   +  TPL +AA      ++  ++           
Sbjct: 96  AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 155

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
            GK+ALH A      +    L  +    + +       +    TPL  AA  G   T+K+
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-------NNREETPLFLAAREGSYETAKV 208

Query: 253 LLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVV 285
           LLDH    A     D        +A    H  +V
Sbjct: 209 LLDHF---ANRDITDHMDRLPRDIAQERMHHDIV 239

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  120 bits (304), Expect = 3e-31
 Identities = 50/262 (19%), Positives = 78/262 (29%), Gaps = 68/262 (25%)

Query: 79  DAKGDSPLHLAAKKGDAA-------------IVKFLIKFAKKQPRDLQRGVKSAERQMLG 125
              G +PL +A+  G                ++   I           +G       +  
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY----------QGAS-----LHN 51

Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
            T+    T LH A R    D AK L+   AD +     +    TPL+ A +  +  +  +
Sbjct: 52  QTDRTGETALHLAARYSRSDAAKRLLEASADAN---IQDNMGRTPLHAAVSADAQGVF-Q 107

Query: 184 ILQKCPSPAHEGPD-------GKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDK 232
           IL +     +   D       G T L  A       +++ L                 D 
Sbjct: 108 ILIR-----NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-------DD 155

Query: 233 YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSS 291
            G + LH AA       + +LL +    A    ++    T L LAA  G       +L  
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLKNG---ANKDMQNNREETPLFLAAREGSYETAKVLLDH 212

Query: 292 CDGCCAKVDER---GWNFLHFA 310
                A  D            A
Sbjct: 213 --F--ANRDITDHMDRLPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  104 bits (261), Expect = 2e-25
 Identities = 38/184 (20%), Positives = 60/184 (32%), Gaps = 31/184 (16%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D  G +PLH A       + + LI+          R      R        +  TPL  A
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQILIR---------NRATDLDAR------MHDGTTPLILA 131

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
            RL    + + LI   AD +   + +   ++ L+ AAA  +V+    +L+   +   +  
Sbjct: 132 ARLAVEGMLEDLINSHADVN---AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 188

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
             +T L  A      E  K L  H    +         D     P   A         +L
Sbjct: 189 REETPLFLAAREGSYETAKVLLDHFANRDIT-------DHMDRLPRDIAQERMHHDIVRL 241

Query: 253 LLDH 256
           L   
Sbjct: 242 LDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  102 bits (257), Expect = 9e-25
 Identities = 46/242 (19%), Positives = 74/242 (30%), Gaps = 69/242 (28%)

Query: 128 NEEQNTPLHEAVR-------------LRSVDVAKILIVADPHVPYSANRNNETPLYMAAA 174
             +  TPL  A                 +  V    I     +    +R  ET L++AA 
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 175 NGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH-----EEKRSLTAV 229
               +   ++L+       +   G+T LHAAV      V + L  +     + +      
Sbjct: 67  YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR------ 120

Query: 230 RDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRI 288
               G TPL  AA    E   + L++     A +   D    +ALH AAA  ++     +
Sbjct: 121 -MHDGTTPLILAARLAVEGMLEDLINSH---ADVNAVDDLGKSALHWAAAVNNVDAAVVL 176

Query: 289 LSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHV 348
           L +  G  A  D +                                    +    TPL +
Sbjct: 177 LKN--G--ANKDMQ------------------------------------NNREETPLFL 196

Query: 349 VA 350
            A
Sbjct: 197 AA 198

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.4 bits (158), Expect = 1e-11
 Identities = 36/153 (23%), Positives = 48/153 (31%), Gaps = 56/153 (36%)

Query: 229 VRDKYGWTPLHHAAYSGRELTS-------------KLLLDH--DKSAAFIGGKDRN-MTA 272
           VR   G+TPL  A+ SG  L +                +              DR   TA
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ----TDRTGETA 60

Query: 273 LHLAAASGHIMVVDRILSSCDGCCAKV---DERGWNFLHFAMVSLDLLQSSGLVIKHPTV 329
           LHLAA         R+L       A     D  G   LH A                   
Sbjct: 61  LHLAARYSRSDAAKRLLE----ASADANIQDNMGRTPLHAA-----------------VS 99

Query: 330 RNS----RLLI---AEDVN-----GNTPLHVVA 350
            ++    ++LI   A D++     G TPL + A
Sbjct: 100 ADAQGVFQILIRNRATDLDARMHDGTTPLILAA 132

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  122 bits (309), Expect = 2e-31
 Identities = 52/244 (21%), Positives = 80/244 (32%), Gaps = 51/244 (20%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           A+  G + LH A    +  +VKFL++  A     D                  E   PLH
Sbjct: 69  ANVDGLTALHQACIDDNVDMVKFLVENGANINQPD-----------------NEGWIPLH 111

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
            A     +D+A+ LI   A      + N   +TPL +A      E++   + +      +
Sbjct: 112 AAASCGYLDIAEYLISQGAHVG---AVNSEGDTPLDIAEEEAMEELLQNEVNR------Q 162

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTS 250
           G D + A          +  + L                  K G T LH AA  G     
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRH-------AKSGGTALHVAAAKGYTEVL 215

Query: 251 KLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNF 306
           KLL+        +  KD +  T LH AA  G       ++ +       ++     G   
Sbjct: 216 KLLIQAR---YDVNIKDYDGWTPLHAAAHWGKEEACRILVEN--L--CDMEAVNKVGQTA 268

Query: 307 LHFA 310
              A
Sbjct: 269 FDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  113 bits (286), Expect = 2e-28
 Identities = 53/318 (16%), Positives = 93/318 (29%), Gaps = 93/318 (29%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
           ADAK      L    G    ++  +           +  K+  +        +       
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVV----------KRKKTKVK-------FDDGAVFLA 46

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           A      +    L+   AD +    AN +  T L+ A  + +V++V  +++   +     
Sbjct: 47  ACSSGDTEEVLRLLERGADIN---YANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
            +G   LHAA      ++ + L                 +  G TPL  A     E   +
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAV-------NSEGDTPLDIAEEEAMEELLQ 156

Query: 252 LLLDH--------DKSAAFIG----------------GKDRN-MTALHLAAASGHIMVVD 286
             ++          K    I                    ++  TALH+AAA G+  V+ 
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 287 RILSSCDGCCAKVDER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRNS----RLLI--- 336
            ++         V+ +   GW  LH A                          R+L+   
Sbjct: 217 LLIQ----ARYDVNIKDYDGWTPLHAA-----------------AHWGKEEACRILVENL 255

Query: 337 ----AEDVNGNTPLHVVA 350
               A +  G T   V  
Sbjct: 256 CDMEAVNKVGQTAFDVAD 273

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (283), Expect = 7e-28
 Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 34/233 (14%)

Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
           M + +Q         + S    +  +V      V +    ++      A ++G  E V +
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF----DDGAVFLAACSSGDTEEVLR 58

Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLH 239
           +L++     +   DG TALH A      +++K L  +     +        D  GW PLH
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-------DNEGWIPLH 111

Query: 240 HAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAK 298
            AA  G    ++ L+      A +G  +    T L +A       ++   ++        
Sbjct: 112 AAASCGYLDIAEYLISQG---AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168

Query: 299 VDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAA 351
             +     +         L S  +                  +G T LHV AA
Sbjct: 169 ARKEEERIMLRDAR--QWLNSGHINDV-----------RHAKSGGTALHVAAA 208

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 98.3 bits (246), Expect = 5e-23
 Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 38/185 (20%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           +++GD+PL +A ++    +++  +    +Q  D+                        E 
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVN---RQGVDI-------------------EAARKEE 173

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
            R+   D  + L     +        ++  T L++AAA G  E++  ++Q       +  
Sbjct: 174 ERIMLRDARQWLNSGHINDV---RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
           DG T LHAA +    E  + L  +    E         +K G T    A         +L
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVENLCDMEAV-------NKVGQTAFDVADEDILGYLEEL 283

Query: 253 LLDHD 257
               +
Sbjct: 284 QKKQN 288

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  119 bits (301), Expect = 3e-31
 Identities = 34/240 (14%), Positives = 73/240 (30%), Gaps = 39/240 (16%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           +    G   +  A    +      L               +  +   +    +  +T   
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYI-------------EEGD---IIYITDMSDTNWW 50

Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
           +        +     VA+         + + PL+ AA  G++  + + L           
Sbjct: 51  KGTSKGRTGLIPSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK 104

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH-----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
            G TAL+ A +    ++++ LF        ++       +K G T LH AA+ G     +
Sbjct: 105 AGSTALYWACHGGHKDIVEMLFTQPNIELNQQ-------NKLGDTALHAAAWKGYADIVQ 157

Query: 252 LLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFA 310
           LLL      A    ++     A  +A  +    ++ +     D      +   +     +
Sbjct: 158 LLLAKG---ARTDLRNIEKKLAFDMATNAACASLL-KKKQGTDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  110 bits (276), Expect = 8e-28
 Identities = 29/217 (13%), Positives = 56/217 (25%), Gaps = 54/217 (24%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
               D+       KG   ++       +                      E  + PLHEA
Sbjct: 42  TDMSDTNWWKGTSKGRTGLIPSNYVAEQ---------------------AESIDNPLHEA 80

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
            +  ++   +  +      +     ++   T LY A   G  +IV  +            
Sbjct: 81  AKRGNLSWLRECLDNRVGVNG---LDKAGSTALYWACHGGHKDIVEMLF------TQPNI 131

Query: 197 D-------GKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSG 245
           +       G TALHAA +    ++++ L       + +       +         A  + 
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-------NIEKKLAFDMATNAA 184

Query: 246 RELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGH 281
                K     D   A     +         +    H
Sbjct: 185 CASLLKKKQGTD---AVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.5 bits (246), Expect = 1e-23
 Identities = 29/208 (13%), Positives = 63/208 (30%), Gaps = 46/208 (22%)

Query: 158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQL 217
           P    +  +  ++ A          ++  +     +      T          T +I   
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 218 FLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLA 276
           ++ E        + +    PLH AA  G     +  LD+      + G D+   TAL+ A
Sbjct: 65  YVAE--------QAESIDNPLHEAAKRGNLSWLRECLDNR---VGVNGLDKAGSTALYWA 113

Query: 277 AASGHIMVVDRILSSCDGCCAKVDER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRNS- 332
              GH  +V+ + +  +    +++++   G   LH A                   +   
Sbjct: 114 CHGGHKDIVEMLFTQPN---IELNQQNKLGDTALHAA-----------------AWKGYA 153

Query: 333 ---RLLI-------AEDVNGNTPLHVVA 350
              +LL+         ++       +  
Sbjct: 154 DIVQLLLAKGARTDLRNIEKKLAFDMAT 181

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 30/183 (16%), Positives = 64/183 (34%), Gaps = 25/183 (13%)

Query: 66  HILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLG 125
               +  + + +     D+PLH AAK+G+ + ++  +             V         
Sbjct: 57  RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD----------NRVGVNGL---- 102

Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIV---ADPHVPYSANRNNETPLYMAAANGSVEIVA 182
             ++  +T L+ A      D+ ++L      + +     N+  +T L+ AA  G  +IV 
Sbjct: 103 --DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ---QNKLGDTALHAAAWKGYADIVQ 157

Query: 183 KILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA 242
            +L K         + K A   A       ++K+    +  R+L    +   +     + 
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL---SNAEDYLDDEDSD 214

Query: 243 YSG 245
              
Sbjct: 215 LEH 217

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  117 bits (297), Expect = 4e-31
 Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 39/210 (18%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
              +    +    ++G+A  V+  +        DL               ++   +PLH 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLD---NTENDLN------------QGDDHGFSPLHW 45

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           A R     V ++LI+  A  +V    NR ++TPL++AA++G  +IV K+LQ         
Sbjct: 46  ACREGRSAVVEMLIMRGARINV---MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN 102

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
             G   LH A +    +V + L  +              +KYG  P+  A    REL  +
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGALVSIC-------NKYGEMPVDKAKAPLRELLRE 155

Query: 252 LLLDHDKSAAFIGGKDRNMTALHLAAASGH 281
                        G++ N          G 
Sbjct: 156 RAEKM--------GQNLNRIPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  103 bits (260), Expect = 5e-26
 Identities = 25/175 (14%), Positives = 62/175 (35%), Gaps = 29/175 (16%)

Query: 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIV------ 181
           + E    +    R  +    ++ +    +     + +  +PL+ A   G   +V      
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 182 -AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWT 236
            A+I               T LH A      +++++L  +              +++G  
Sbjct: 62  GARINVM-------NRGDDTPLHLAASHGHRDIVQKLLQYKADINAV-------NEHGNV 107

Query: 237 PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
           PLH+A + G++  ++ L+ +    A +   ++     +  A A    ++ +R   
Sbjct: 108 PLHYACFWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.6 bits (200), Expect = 7e-18
 Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 51/176 (28%)

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAV----RDKYGWTPLHHAAYSGRELTSK 251
           P+    +           ++    +      T       D +G++PLH A   GR    +
Sbjct: 3   PEFMDDIFTQCREGNAVAVRLWLDN------TENDLNQGDDHGFSPLHWACREGRSAVVE 56

Query: 252 LLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKV---DERGWNFL 307
           +L+      A I   +R   T LHLAA+ GH  +V ++L       A +   +E G   L
Sbjct: 57  MLIMRG---ARINVMNRGDDTPLHLAASHGHRDIVQKLLQY--K--ADINAVNEHGNVPL 109

Query: 308 HFAMVSLDLLQSSGLVIKHPTVRNSRLLIAE-------DVN-----GNTPLHVVAA 351
           H+A                      +  +AE        V+     G  P+    A
Sbjct: 110 HYA------------------CFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 147

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  118 bits (299), Expect = 8e-31
 Identities = 52/240 (21%), Positives = 84/240 (35%), Gaps = 55/240 (22%)

Query: 82  GDSPLHLAAKKGDA-AIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR 140
            +SPL LAAK+ D  A+ K L             G +  +R           T LH A  
Sbjct: 3   WESPLLLAAKENDVQALSKLLKF----------EGCEVHQR------GAMGETALHIAAL 46

Query: 141 LRSVDVAKILIVADPHVPY----SANRNNETPLYMAAANGSVEIV-------------AK 183
             +++ A +L+ A P + +    S     +T L++A  N +V +V             A 
Sbjct: 47  YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARAT 106

Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLH 239
                  P +    G+  L  A      E+++ L  H      +       D  G T LH
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ-------DSLGNTVLH 159

Query: 240 HAAYSGRELT----SKLLLDHD-----KSAAFIGGKDRNMTALHLAAASGHIMVVDRILS 290
                  +        LLL +D     KS   +      +T   LA   G+I++   ++ 
Sbjct: 160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ-GLTPFKLAGVEGNIVMFQHLMQ 218

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 96.9 bits (242), Expect = 4e-23
 Identities = 43/216 (19%), Positives = 64/216 (29%), Gaps = 45/216 (20%)

Query: 166 ETPLYMAAANGSVEIVAKILQKCPSPAH------EGPDGKTALHAAVYTYPTEVIKQLFL 219
           E+PL +AA    V+ ++K+L+              G  G+TALH A      E    L  
Sbjct: 4   ESPLLLAAKENDVQALSKLLKF-----EGCEVHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 220 H--EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH-------DKSAAFIGGKDRNM 270
              E            G T LH A  +      + LL            + F       +
Sbjct: 59  AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118

Query: 271 ----TALHLAAASGHIMVVDRILSSCDGCCAKV---DERGWNFLHFA---------MVSL 314
                 L  AA  G   +V  ++    G  A +   D  G   LH               
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIEH--G--ADIRAQDSLGNTVLHILILQPNKTFACQMY 174

Query: 315 DLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
           +LL S        ++         +  G TP  +  
Sbjct: 175 NLLLSYDGGDHLKSLEL-----VPNNQGLTPFKLAG 205

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 76.9 bits (190), Expect = 4e-16
 Identities = 34/182 (18%), Positives = 58/182 (31%), Gaps = 51/182 (28%)

Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTA---VRDKYGWTPLHHAAYSGRELTSKLLL 254
            ++ L  A      + + +L               R   G T LH AA       + +L+
Sbjct: 3   WESPLLLAAKENDVQALSKLLK-----FEGCEVHQRGAMGETALHIAALYDNLEAAMVLM 57

Query: 255 DH--DKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS------------SCDGCCAKV 299
           +   +     +  +     TALH+A  + ++ +V  +L+                    +
Sbjct: 58  EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117

Query: 300 DERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNS----RLLI-------AEDVNGNTPLHV 348
              G + L FA                     S    RLLI       A+D  GNT LH+
Sbjct: 118 IYYGEHPLSFA-----------------ACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160

Query: 349 VA 350
           + 
Sbjct: 161 LI 162

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 22/134 (16%)

Query: 233 YGWTPLHHAAYSGR-ELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
              +PL  AA     +  SKLL         +  +     TALH+AA   ++     ++ 
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFE---GCEVHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 291 -----SCDGCCAKVDERGWNFLHFA-------MVSLDLLQSSGLVI--KHPTVRNSRLLI 336
                  +   ++    G   LH A       +V    L + G  +  +           
Sbjct: 59  AAPELVFEPMTSE-LYEGQTALHIAVINQNVNLV--RALLARGASVSARATGSVFHYRPH 115

Query: 337 AEDVNGNTPLHVVA 350
                G  PL   A
Sbjct: 116 NLIYYGEHPLSFAA 129

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  116 bits (294), Expect = 2e-30
 Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 46/230 (20%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
             +  + L  A ++    + + L               +  E       + E NTPL+ A
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD----------TTYQVDEV------DTEGNTPLNIA 46

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL--QKCPSPAHE 194
           V    +++AK LI   AD +     N  +++P   A A G  EI+   +     P     
Sbjct: 47  VHNNDIEIAKALIDRGADIN---LQNSISDSPYLYAGAQGRTEIL-AYMLKHATPDLNKH 102

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLH-----EEKRSLTAVRDKYGWTPLHHAAYS----- 244
              G  AL  A      + +K L        + +       + +G+T L  A        
Sbjct: 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ-------NDFGYTALIEAVGLREGNQ 155

Query: 245 GRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCD 293
             +   KLL+++    A    KD +  TA+  A   G+  +  +IL+  +
Sbjct: 156 LYQDIVKLLMENG---ADQSIKDNSGRTAMDYANQKGYTEIS-KILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  105 bits (266), Expect = 1e-26
 Identities = 41/191 (21%), Positives = 66/191 (34%), Gaps = 35/191 (18%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
            D +G++PL++A    D  I K LI           RG     +      N   ++P   
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALID----------RGADINLQ------NSISDSPYLY 78

Query: 138 AVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL--QKCPSPAHEG 195
           A      ++   ++          NR     L  AA  G ++ V K+L          + 
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV-KLLLEDGREDIDFQN 137

Query: 196 PDGKTALHAAVYTYP-----TEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGR 246
             G TAL  AV          +++K L  +      K       D  G T + +A   G 
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK-------DNSGRTAMDYANQKGY 190

Query: 247 ELTSKLLLDHD 257
              SK+L  ++
Sbjct: 191 TEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  101 bits (254), Expect = 7e-25
 Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 35/202 (17%)

Query: 162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH- 220
                  L  A    + ++   +            +G T L+ AV+    E+ K L    
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 221 ---EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLA 276
                +       +    +P  +A   GR      +L H      +   +R    AL  A
Sbjct: 63  ADINLQ-------NSISDSPYLYAGAQGRTEILAYMLKHA--TPDLNKHNRYGGNALIPA 113

Query: 277 AASGHIMVVDRILSSCDGCCAKVDER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRNSR 333
           A  GHI  V  +L    G    +D +   G+  L  A+   +  Q    ++K        
Sbjct: 114 AEKGHIDNVKLLLED--GR-EDIDFQNDFGYTALIEAVGLREGNQLYQDIVK-------- 162

Query: 334 LLI-------AEDVNGNTPLHV 348
           LL+        +D +G T +  
Sbjct: 163 LLMENGADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  100 bits (252), Expect = 1e-24
 Identities = 40/208 (19%), Positives = 66/208 (31%), Gaps = 46/208 (22%)

Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV-- 181
           M   E    L  A +  +  V +IL             +    TPL +A  N  +EI   
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVD---EVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 182 -----AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH-----EEKRSLTAVRD 231
                A I  +            +    A     TE++  +  H      +        +
Sbjct: 58  LIDRGADINLQ-------NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-------N 103

Query: 232 KYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAAS-----GHIMVV 285
           +YG   L  AA  G     KLLL+  +    I  ++    TAL  A         +  +V
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGR--EDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161

Query: 286 DRILSSCDGCCAKVDER---GWNFLHFA 310
             ++ +  G  A    +   G   + +A
Sbjct: 162 KLLMEN--G--ADQSIKDNSGRTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 66.3 bits (163), Expect = 9e-13
 Identities = 17/138 (12%), Positives = 38/138 (27%), Gaps = 40/138 (28%)

Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDR 287
           ++       L  A     +   ++L D       +   D    T L++A  +  I +   
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTT---YQVDEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 288 ILSSCDGCCAKVDER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRNS----RLLI---A 337
           ++    G  A ++ +     +   +A                   +        ++    
Sbjct: 58  LIDR--G--ADINLQNSISDSPYLYA-----------------GAQGRTEILAYMLKHAT 96

Query: 338 EDVN-----GNTPLHVVA 350
            D+N     G   L   A
Sbjct: 97  PDLNKHNRYGGNALIPAA 114

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  116 bits (293), Expect = 2e-30
 Identities = 42/227 (18%), Positives = 66/227 (29%), Gaps = 56/227 (24%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
            D  G+    +  +K     + FL    +                     +    TPL  
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLR-NYR---------------------DSYNRTPLMV 41

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV-------AKILQKC 188
           A  L   +    L+            +    T L  A  N  + I        + +  K 
Sbjct: 42  ACMLGMENAIDKLVENFDKLE---DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK- 97

Query: 189 PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYS 244
                    GKT L  ++    +E+   L  H     ++       +  G TPL  A+  
Sbjct: 98  ------DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR-------NLEGETPLIVASKY 144

Query: 245 GRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
           GR    K LL+     A I  +D   +TA   A   G   V+     
Sbjct: 145 GRSEIVKKLLELG---ADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  102 bits (258), Expect = 1e-25
 Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 46/194 (23%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D+   +PL +A   G    +  L++             K  ++      + E +T L  A
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLVE----------NFDKLEDK------DIEGSTALIWA 75

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV-------AKILQKCP 189
           V+   + +A+ L+   ++ +     + + +TPL  +   G  E+        A +  +  
Sbjct: 76  VKNNRLGIAEKLLSKGSNVNT---KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR-- 130

Query: 190 SPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSG 245
                  +G+T L  A     +E++K+L         +       D  G T    A   G
Sbjct: 131 -----NLEGETPLIVASKYGRSEIVKKLLELGADISAR-------DLTGLTAEASARIFG 178

Query: 246 RELTSKLLLDHDKS 259
           R+   K+  +  ++
Sbjct: 179 RQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 91.7 bits (229), Expect = 1e-21
 Identities = 35/207 (16%), Positives = 60/207 (28%), Gaps = 56/207 (27%)

Query: 160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFL 219
             ++N E    +       +     L+      +     +T L  A        I +L  
Sbjct: 3   HMDKNGEIVEKIKDEKSINQN-LDFLRN-----YRDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 220 H----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALH 274
           +    E+K       D  G T L  A  + R   ++ LL      + +  KD +  T L 
Sbjct: 57  NFDKLEDK-------DIEGSTALIWAVKNNRLGIAEKLLSKG---SNVNTKDFSGKTPLM 106

Query: 275 LAAASGHIMVVDRILSSCDGCCAKVDER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRN 331
            +   G+  +    L       A V++R   G   L  A                 +   
Sbjct: 107 WSIIFGYSEMS-YFLLEHG---ANVNDRNLEGETPLIVA-----------------SKYG 145

Query: 332 S----RLLI-------AEDVNGNTPLH 347
                + L+       A D+ G T   
Sbjct: 146 RSEIVKKLLELGADISARDLTGLTAEA 172

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.9 bits (131), Expect = 1e-08
 Identities = 21/138 (15%), Positives = 35/138 (25%), Gaps = 45/138 (32%)

Query: 228 AVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVD 286
           +  DK G                  L ++         +D    T L +A   G    + 
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNY---------RDSYNRTPLMVACMLGMENAI- 51

Query: 287 RILSSCDGCCAKVDER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRNS----RLLI--- 336
             L        K++++   G   L +A                    N       L+   
Sbjct: 52  DKLVENF---DKLEDKDIEGSTALIWA-----------------VKNNRLGIAEKLLSKG 91

Query: 337 ----AEDVNGNTPLHVVA 350
                +D +G TPL    
Sbjct: 92  SNVNTKDFSGKTPLMWSI 109

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  117 bits (296), Expect = 8e-30
 Identities = 41/221 (18%), Positives = 71/221 (32%), Gaps = 39/221 (17%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN-TPLH 136
           AD  G S  + A    +  +V  L+            G            N  +N  PLH
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLN----------AGAL---------KNLLENEFPLH 67

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
           +A  L    + KIL+    D       +    T LY A  +G+++ V   ++K       
Sbjct: 68  QAATLEDTKIVKILLFSGLDDSQ---FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124

Query: 195 GPDG-KTALHAAVYTYPTEVIKQLFLHEEKRSLTAV--RDKYGWTPLHHAAYSGRELTSK 251
           G  G KT+ + AV      ++                       + +H    +G      
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEI------PSTFDLAILLSCIHITIKNGHVDMMI 178

Query: 252 LLLDHDKSAAFIGGKDRNM--TALHLAAASGHIMVVDRILS 290
           LLLD+          +  +    + LA  +  I ++  +  
Sbjct: 179 LLLDYM---TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK 216

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  116 bits (292), Expect = 3e-29
 Identities = 35/236 (14%), Positives = 74/236 (31%), Gaps = 47/236 (19%)

Query: 128 NEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
           +   ++  + A+   +V +   L+   A  ++       NE PL+ AA     +IV  +L
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGALKNL-----LENEFPLHQAATLEDTKIVKILL 82

Query: 186 QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGW-TPLHH 240
                 +     G TAL+ AV +   + +K                    K GW T  +H
Sbjct: 83  FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-------GKTGWKTSFYH 135

Query: 241 AAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVD 300
           A            L               ++ +H+   +GH+ ++  +L          +
Sbjct: 136 AVMLNDVSIVSYFLSE---IPSTFDLAILLSCIHITIKNGHVDMMILLLDY--M--TSTN 188

Query: 301 ER---GW-NFLHFAMV--SLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
                 +   +  A+    ++       +++         L   D+N  +      
Sbjct: 189 TNNSLLFIPDIKLAIDNKDIE-------MLQ--------ALFKYDINIYSANLENV 229

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =   99 bits (250), Expect = 1e-23
 Identities = 34/249 (13%), Positives = 72/249 (28%), Gaps = 59/249 (23%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
            + PLH AA   D  IVK L+            G+  ++       +++ NT L+ AV  
Sbjct: 62  NEFPLHQAATLEDTKIVKILLF----------SGLDDSQF------DDKGNTALYYAVDS 105

Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTA 201
            ++   K+ +  +  + +      +T  Y A     V IV+  L + PS   +     + 
Sbjct: 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSC 164

Query: 202 LHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHH----------------- 240
           +H  +     +++  L  +              +   + P                    
Sbjct: 165 IHITIKNGHVDMMILLLDYMTSTNTN-------NSLLFIPDIKLAIDNKDIEMLQALFKY 217

Query: 241 ----------AAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRIL 289
                              +K++++                  +        I+  ++ L
Sbjct: 218 DINIYSANLENVLLDDAEIAKMIIEKH---VEYKSDSYTKDLDIVKNNKLDEIISKNKEL 274

Query: 290 SSCDGCCAK 298
                 C K
Sbjct: 275 RLMYVNCVK 283

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 68.3 bits (168), Expect = 7e-13
 Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 48/185 (25%)

Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
           G         T+ ++ +K     ++        D +G +  ++A           LL+  
Sbjct: 1   GMDLSRIN--TWKSKQLKSFLSSKDTFK----ADVHGHSASYYAIADNNVRLVCTLLNAG 54

Query: 258 KSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKV---DERGWNFLHFA---- 310
              A     + N   LH AA      +V  +L S  G        D++G   L++A    
Sbjct: 55  ---ALKNLLE-NEFPLHQAATLEDTKIVKILLFS--G--LDDSQFDDKGNTALYYAVDSG 106

Query: 311 ---MVSLDLLQSSGLVIK-----------HPTVRNS-----RLLI------AEDVNGNTP 345
               V   L       +            +  V  +        +       +     + 
Sbjct: 107 NMQTV--KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC 164

Query: 346 LHVVA 350
           +H+  
Sbjct: 165 IHITI 169

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  115 bits (289), Expect = 3e-29
 Identities = 47/289 (16%), Positives = 78/289 (26%), Gaps = 73/289 (25%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           +   +G     +  K G +                      +A+         E  TP  
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSY-------------IAAD------VVSEYETPWW 50

Query: 137 EAVRLRSVDVAKILIV-ADPHVPYSANRNNETPLYMAAANGSVEIV-------AKILQKC 188
            A R         L+   D     + + N  T L   A  GS + V       A +  + 
Sbjct: 51  TAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR- 106

Query: 189 PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYS 244
                +   G TALH A      EV++ L       E +       D+ G T L  A   
Sbjct: 107 -----DMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-------DERGLTALELAREI 154

Query: 245 GRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGW 304
            +       +        IG +   +  +       +  V + I+            +G 
Sbjct: 155 LKTTPKGNPMQF---GRRIGLEK--VINVLEGQVFEYAEVDE-IVEK--------RGKGK 200

Query: 305 NFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDV--NGNTPLHVVAA 351
           +  +      D      +   H         +AEDV  +    L    A
Sbjct: 201 DVEYLVRWK-DGGDCEWVKGVH---------VAEDVAKDYEDGLEYAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  111 bits (281), Expect = 3e-28
 Identities = 43/262 (16%), Positives = 72/262 (27%), Gaps = 49/262 (18%)

Query: 40  GNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVK 99
               A    ++ ++G      +        ++  V     ++ ++P   AA+K D   + 
Sbjct: 12  AGEGAMEYLIEWKDGH-----SPSWVPSSYIAADV----VSEYETPWWTAARKADEQALS 62

Query: 100 FLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY 159
            L++       D                 E   T L     L S    ++L  A   + +
Sbjct: 63  QLLEDRDVDAVD-----------------ENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105

Query: 160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFL 219
              R   T L+MAA     E+V  +++       E   G TAL  A     T        
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ 165

Query: 220 HEEKRSLTAV-------------------RDKYGWTPLHHAAYSGRELTSKLLLDHDKSA 260
              +  L  V                   +   G    +   +        +   H    
Sbjct: 166 FGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVH---V 222

Query: 261 AFIGGKDRNMTALHLAAASGHI 282
           A    KD     L  A A   I
Sbjct: 223 AEDVAKD-YEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 89.6 bits (223), Expect = 2e-20
 Identities = 41/220 (18%), Positives = 65/220 (29%), Gaps = 48/220 (21%)

Query: 161 ANRNNE---TPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQL 217
            +R          +   +G               A    + +T    A      + + QL
Sbjct: 8   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA---ADVVSEYETPWWTAARKADEQALSQL 64

Query: 218 FLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN--MT 271
            L     +         D+ G T L   A  G +   +LL +     A +  +D    +T
Sbjct: 65  -LEDRDVDAV-------DENGRTALLFVAGLGSDKCVRLLAEAG---ADLDHRDMRGGLT 113

Query: 272 ALHLAAASGHIMVVDRILSSCDGCCAKV---DERGWNFLHFA-------MVSLDLLQ--- 318
           ALH+AA      VV+ ++    G  A +   DERG   L  A             +Q   
Sbjct: 114 ALHMAAGYVRPEVVEALVEL--G--ADIEVEDERGLTALELAREILKTTPKGN-PMQFGR 168

Query: 319 SSGLVIKHPTVRNSRLLIAEDVN-------GNTPLHVVAA 351
             GL      +       AE          G    ++V  
Sbjct: 169 RIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRW 208

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  114 bits (288), Expect = 6e-29
 Identities = 47/239 (19%), Positives = 68/239 (28%), Gaps = 48/239 (20%)

Query: 76  FQADAKGDSPLHLA---AKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQ 131
           F+    G + L  A      G    +  L+    K             +    G T    
Sbjct: 48  FKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQT---- 103

Query: 132 NTPLHEAVRLRSVDVAKILI-------------VADPHVPYSANRNNETPLYMAAANGSV 178
              LH A+  R++ +  +L+                           E PL +AA    +
Sbjct: 104 --ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 179 EIVAKILQKCPSPAH---EGPDGKTALHAAVYTYPTEVIKQLFLHE-------------E 222
            IV  +LQ    PA        G T LHA V      V    F+                
Sbjct: 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221

Query: 223 KRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH 281
              L  + ++ G TPL  AA SG+      +L  +                H AA   H
Sbjct: 222 TLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH---------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  104 bits (261), Expect = 2e-25
 Identities = 41/313 (13%), Positives = 80/313 (25%), Gaps = 96/313 (30%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
                  +  A  + +   ++ L+ F ++     +R   S  +       E   T L +A
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRS---KKRLTDSEFKD-----PETGKTCLLKA 61

Query: 139 V---RLRSVDVAKILIVADPHV----------PYSANRNNETPLYMAAANGSVEIV---- 181
           +        D   +L+                   +    +T L++A    ++ +V    
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 182 ---AKILQKC-------PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRD 231
              A +                    G+  L  A  T    ++K L  +  + +  + RD
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181

Query: 232 KYGWTPLHHAAYSGRELTS---------KLLLDHDKS----AAFIGGKDRN-MTALHLAA 277
             G T LH                      +L                +R  +T L LAA
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241

Query: 278 ASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIA 337
           +SG I V+                                                 ++ 
Sbjct: 242 SSGKIGVL-----------------------------------------------AYILQ 254

Query: 338 EDVNGNTPLHVVA 350
            +++     H  A
Sbjct: 255 REIHEPECRHAAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 95.6 bits (238), Expect = 4e-22
 Identities = 40/271 (14%), Positives = 84/271 (30%), Gaps = 47/271 (17%)

Query: 5   LFEAAAKGDIEPFREIAR--DELESIVTDLMNNTVLYGNITASHL-TLQTEEG--EIVSV 59
           +F+A A+ + +    +       +  +TD        G  T      L    G  + +++
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGK-TCLLKAMLNLHNGQNDTIAL 75

Query: 60  ---STKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRG 115
                +  + +     +    +  KG + LH+A ++ +  +V  L++  A  Q       
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 116 VKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILI-----VADPHVPYSANRNNETPLY 170
            K  + +      E    PL  A     + + K L+      AD     + +    T L+
Sbjct: 136 FKKTKGRPGFYFGE---LPLSLAACTNQLAIVKFLLQNSWQPADIS---ARDSVGNTVLH 189

Query: 171 MAAANGS----------------VEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVI 214
                                  + + AK+             G T L  A  +    V+
Sbjct: 190 ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL 249

Query: 215 KQLFLHEEKRSLTAVRDKYGWTPLHHAAYSG 245
              ++ +        R+ +     H AA+  
Sbjct: 250 A--YILQ--------REIHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 90.2 bits (224), Expect = 2e-20
 Identities = 41/234 (17%), Positives = 67/234 (28%), Gaps = 46/234 (19%)

Query: 162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD--------GKTALHAAVYTYP--- 210
              +   ++ A A  + + +  +L           D        GKT L  A+       
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 211 TEVIKQLF-----LHEEKRSLTAV---RDKYGWTPLHHAAYSGRELTSKLLLDH------ 256
            + I  L          K+ + A        G T LH A          LL+++      
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 257 -DKSAAFIGGKDRN-----MTALHLAAASGHIMVVDRILSSCDGCCAKV---DERGWNFL 307
                 F   K R         L LAA +  + +V + L       A +   D  G   L
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV-KFLLQNSWQPADISARDSVGNTVL 188

Query: 308 HFA--------MVSLDLLQSSGLVIKH--PTVRNSRLLIAEDVNGNTPLHVVAA 351
           H            +  +      ++          +L    +  G TPL  +AA
Sbjct: 189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA-LAA 241

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  107 bits (271), Expect = 1e-27
 Identities = 35/179 (19%), Positives = 63/179 (35%), Gaps = 19/179 (10%)

Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
           +  +H+      +D  K  +    ++    +    TPL  A+A G +E V  +L+    P
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRE 247
                + ++AL  A     T+++  L                 D  G TPL +A      
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDINIY-------DWNGGTPLLYAVRGNHV 115

Query: 248 LTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWN 305
              + LL      A +  +  +  T + LA A G+  V   I +       K+ +    
Sbjct: 116 KCVEALLARG---ADLTTEADSGYTPMDLAVALGYRKVQQVIENH--I--LKLFQSNLV 167

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  100 bits (251), Expect = 7e-25
 Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 32/182 (17%)

Query: 82  GDS-PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR 140
           GDS  +H  A +G+   +K  +                    ++   +E   TPL  A  
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHL---------------RKGDNLVNKPDERGFTPLIWASA 45

Query: 141 LRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
              ++  + L+   ADPH+     +  E+ L +A+  G  +IV  +L++         +G
Sbjct: 46  FGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102

Query: 199 KTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
            T L  AV     + ++ L         +          G+TP+  A   G     +++ 
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTE-------ADSGYTPMDLAVALGYRKVQQVIE 155

Query: 255 DH 256
           +H
Sbjct: 156 NH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 82.1 bits (204), Expect = 2e-18
 Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 32/166 (19%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
            D +G +PL  A+  G+   V+FL++               A+     +  +E+ + L  
Sbjct: 32  PDERGFTPLIWASAFGEIETVRFLLE-------------WGAD---PHILAKERESALSL 75

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           A      D+  +L+    D ++    + N  TPL  A     V+ V  +L +      E 
Sbjct: 76  ASTGGYTDIVGLLLERDVDINI---YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA 132

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTP 237
             G T +  AV     +V + +  H     +        +     P
Sbjct: 133 DSGYTPMDLAVALGYRKVQQVIENHILKLFQS-------NLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 64.0 bits (157), Expect = 3e-12
 Identities = 29/129 (22%), Positives = 38/129 (29%), Gaps = 31/129 (24%)

Query: 234 GWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSC 292
               +H  A  G     K  L        +   D    T L  A+A G I  V  +L   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKG--DNLVNKPDERGFTPLIWASAFGEIETVRFLLEW- 58

Query: 293 DGCCAKVDER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLI-------AEDVNG 342
            G  A          + L  A        S+G    +  +    LL+         D NG
Sbjct: 59  -G--ADPHILAKERESALSLA--------STG---GYTDI--VGLLLERDVDINIYDWNG 102

Query: 343 NTPLHVVAA 351
            TPL   A 
Sbjct: 103 GTPLL-YAV 110

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  109 bits (274), Expect = 2e-27
 Identities = 44/237 (18%), Positives = 78/237 (32%), Gaps = 29/237 (12%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
                +LA       + + ++               +        T+++  T LH A   
Sbjct: 7   NIMICNLAYSGKLDELKERILA----------DKSLATR------TDQDSRTALHWACSA 50

Query: 142 RSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGK 199
              ++ + L+      +     +    +PL++AA+ G  EIV  +L K         +G 
Sbjct: 51  GHTEIVEFLLQLGVPVN---DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC 107

Query: 200 TALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKS 259
           T LH A      E+   L            +D Y  T +H AA  G      +LL +   
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHILLFY--- 161

Query: 260 AAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLD 315
            A    +D    T LHLA     +     +++       + ++     L  A   L 
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE-NKEEKTPLQVAKGGLG 217

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 94.2 bits (234), Expect = 4e-22
 Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 26/213 (12%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D    + LH A   G   IV+FL+          Q GV   ++      ++   +PLH A
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLL----------QLGVPVNDK------DDAGWSPLHIA 80

Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
                 ++ K L+V   HV  + N+N  TPL+ AA+    EI   +L+   +P  +    
Sbjct: 81  ASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139

Query: 199 KTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDK 258
            TA+H A      +++  L  ++   +   ++D  G TPLH A    R   +K L+    
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTN---IQDTEGNTPLHLACDEERVEEAKFLVTQ-- 194

Query: 259 SAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
             A I  +++   T L +A   G + ++ + L+
Sbjct: 195 -GASIYIENKEEKTPLQVAK--GGLGLILKRLA 224

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 91.9 bits (228), Expect = 3e-21
 Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH--- 220
           +N     +A +    E+  +IL           D +TALH A     TE+++ L      
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 221 -EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAA 278
             +K       D  GW+PLH AA +G +   K LL      A +   ++N  T LH AA+
Sbjct: 66  VNDK-------DDAGWSPLHIAASAGXDEIVKALLVK---GAHVNAVNQNGCTPLHYAAS 115

Query: 279 SGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAE 338
                +   +L       AK D      +H A      L+   +++ +    N +     
Sbjct: 116 KNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAK-GNLKMVHILLFYKASTNIQ----- 168

Query: 339 DVNGNTPLHVVA 350
           D  GNTPLH+  
Sbjct: 169 DTEGNTPLHLAC 180

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 80.3 bits (198), Expect = 3e-17
 Identities = 44/179 (24%), Positives = 67/179 (37%), Gaps = 22/179 (12%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
            D  G SPLH+AA  G   IVK L+                     +   N+   TPLH 
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAH----------------VNAVNQNGCTPLHY 112

Query: 138 AVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD 197
           A      ++A +L+    +   + +  + T ++ AAA G++++V  +L    S   +  +
Sbjct: 113 AASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171

Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
           G T LH A      E  K L           + +K   TPL  A   G        L  
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIY---IENKEEKTPLQVAK--GGLGLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 35/181 (19%)

Query: 5   LFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFV 64
           L  AA+ G  E  + +          +    T L       H        EI  +    +
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPL-------HYAASKNRHEIAVM---LL 126

Query: 65  EHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQML 124
           E   +         D    + +H AA KG+  +V  L+ +                    
Sbjct: 127 EGGANPD-----AKDHYDATAMHRAAAKGNLKMVHILLFYKAS----------------T 165

Query: 125 GMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKI 184
            + + E NTPLH A     V+ AK L+     + Y  N+  +TPL +A   G + ++   
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAK--GGLGLI-LK 221

Query: 185 L 185
            
Sbjct: 222 R 222

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  108 bits (272), Expect = 5e-27
 Identities = 45/245 (18%), Positives = 70/245 (28%), Gaps = 34/245 (13%)

Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
              L    R          I     V    N      L  ++  G  ++V +I+ +   P
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRE 247
           +    +G TALH AV    TE++K L                 D  GWTPLH AA     
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA-------DSDGWTPLHCAASCNNV 116

Query: 248 LTSKLLLDHDKSAAFIGGKDRN----MTALHLAAASGHIMVVDRILSSCDGCCAKVDER- 302
              K L++     A +     +              G+      +         K+    
Sbjct: 117 QVCKFLVESG---AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV----QEKMGIMN 169

Query: 303 --GWNFLHFAMVS----LDLLQSSGLVIKH-PTVRNSRLLIAE--DVNGNTPLHVVAAVC 353
                 L          L + +   + I H           A   D  G  P +++    
Sbjct: 170 KGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229

Query: 354 RLSHR 358
           R+  R
Sbjct: 230 RIKPR 234

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  106 bits (266), Expect = 4e-26
 Identities = 37/216 (17%), Positives = 55/216 (25%), Gaps = 40/216 (18%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           +  G   L    +          I            G++          N      L ++
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIA----------HGMRVKF-------NPLPLALLLDS 44

Query: 139 VRLRSVDVAKILI--VADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
                 D+ + +I  V DP      N    T L+ A   G  EIV K L         G 
Sbjct: 45  SLEGEFDLVQRIIYEVDDPS---LPNDEGITALHNAVCAGHTEIV-KFL------VQFGV 94

Query: 197 D-------GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELT 249
           +       G T LH A      +V K L             D             G    
Sbjct: 95  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154

Query: 250 SKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMV 284
           S+ L         +G  ++  + AL          +
Sbjct: 155 SQFLYGVQ---EKMGIMNKGVIYALWDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 93.4 bits (233), Expect = 9e-22
 Identities = 31/213 (14%), Positives = 70/213 (32%), Gaps = 38/213 (17%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
            +    + L  ++ +G+  +V+ +I                       + N+E  T LH 
Sbjct: 33  FNPLPLALLLDSSLEGEFDLVQRIIY----------EVDD------PSLPNDEGITALHN 76

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV-------AKILQKC 188
           AV     ++ K L+    + +   +A+ +  TPL+ AA+  +V++        A +    
Sbjct: 77  AVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133

Query: 189 PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
               +            +    T+  + L+  +EK     + +K     L        + 
Sbjct: 134 ----YSDMQTAADKCEEMEEGYTQCSQFLYGVQEK---MGIMNKGVIYALWDYEPQNDD- 185

Query: 249 TSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH 281
             +L +        I  +D +      A  +  
Sbjct: 186 --ELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 30/183 (16%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPL 135
             + +G + LH A   G   IVKFL++F       D                  +  TPL
Sbjct: 65  LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD-----------------SDGWTPL 107

Query: 136 HEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH 193
           H A    +V V K L+   A       ++             G  +    +         
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167

Query: 194 EGPDGKTALHAAVYTYPTEVIKQ-----LFLH-----EEKRSLTAVRDKYGWTPLHHAAY 243
                  AL         E+  +       +H     E +     + DK G+ P +    
Sbjct: 168 MNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227

Query: 244 SGR 246
             R
Sbjct: 228 YPR 230

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 31/133 (23%)

Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS 290
           +  G   L     +    T    + H      +      +  L  ++  G   +V RI+ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHG---MRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 291 SCDGCCAKV---DERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLI-------AEDV 340
                       ++ G   LH A+        +G       V   + L+       A D 
Sbjct: 59  E--V--DDPSLPNDEGITALHNAV-------CAG---HTEIV---KFLVQFGVNVNAADS 101

Query: 341 NGNTPLHVVAAVC 353
           +G TPLH  AA C
Sbjct: 102 DGWTPLH-CAASC 113

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  105 bits (265), Expect = 9e-27
 Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 24/168 (14%)

Query: 132 NTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP 189
           +  +H+      +      I      +     +    TPL  AAA+G + +V  +LQ   
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 190 SPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSG 245
            P   G   ++AL  A     T+++K L        E        D  G TPL +A +  
Sbjct: 61  DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY-------DWNGGTPLLYAVHGN 113

Query: 246 RELTSKLLLDH--DKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
                K+LL+   D +      +  +   ++ LA A G+  V   I S
Sbjct: 114 HVKCVKMLLESGADPTI-----ETDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  103 bits (259), Expect = 5e-26
 Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 32/181 (17%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
               +H  A +G+   +   I+          +         +  T+EE  TPL  A   
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIE----------QENV------INHTDEEGFTPLMWAAAH 46

Query: 142 RSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGK 199
             + V + L+   ADP +     +  E+ L +A + G  +IV  +L           +G 
Sbjct: 47  GQIAVVEFLLQNGADPQL---LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG 103

Query: 200 TALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLD 255
           T L  AV+    + +K L         +          G+  +  A   G     +++  
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADPTIE-------TDSGYNSMDLAVALGYRSVQQVIES 156

Query: 256 H 256
           H
Sbjct: 157 H 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 95.5 bits (239), Expect = 3e-23
 Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 22/155 (14%)

Query: 164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH--- 220
            N   ++  AA G +  +A  +++     H   +G T L  A       V++ L  +   
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 221 -EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAA 278
            +          K   + L  A   G     K+LLD       +   D N  T L  A  
Sbjct: 62  PQLL-------GKGRESALSLACSKGYTDIVKMLLDCG---VDVNEYDWNGGTPLLYAVH 111

Query: 279 SGHIMVVDRILSSCDGCCAKVDER---GWNFLHFA 310
             H+  V  +L S  G  A        G+N +  A
Sbjct: 112 GNHVKCVKMLLES--G--ADPTIETDSGYNSMDLA 142

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 42/169 (24%)

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
               ++H          +                    D+ G+TPL  AA  G+    + 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHT-------DEEGFTPLMWAAAHGQIAVVEF 54

Query: 253 LLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNFLH 308
           LL +    A      +   +AL LA + G+  +V ++L  C      V+E    G   L 
Sbjct: 55  LLQNG---ADPQLLGKGRESALSLACSKGYTDIV-KMLLDCG---VDVNEYDWNGGTPLL 107

Query: 309 FAMVSLDLLQSSGLVIKHPTVRNSRLLI-------AEDVNGNTPLHVVA 350
           +A+                 V   ++L+        E  +G   + +  
Sbjct: 108 YAV-------HGN---HVKCV---KMLLESGADPTIETDSGYNSMDLAV 143

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 65.9 bits (162), Expect = 7e-13
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 22/110 (20%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
                +S L LA  KG   IVK L+            GV       +   +    TPL  
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLD----------CGVD------VNEYDWNGGTPLLY 108

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
           AV    V   K+L+   ADP +      +    + +A A G   +  +++
Sbjct: 109 AVHGNHVKCVKMLLESGADPTI---ETDSGYNSMDLAVALGYRSVQ-QVI 154

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  104 bits (263), Expect = 2e-26
 Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 20/166 (12%)

Query: 132 NTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP 189
              L EA R    D  +IL+   AD +   + + +  TPL++AA NG +EIV  +L+   
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVN---AEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71

Query: 190 SPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSG 245
                   G T L  A      E+++ L  +              D  G TPLH AA  G
Sbjct: 72  DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN-------DMEGHTPLHLAAMFG 124

Query: 246 RELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
                ++LL +    A +  +D+   TA  ++  +G+  + + +  
Sbjct: 125 HLEIVEVLLKNG---ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  103 bits (261), Expect = 3e-26
 Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 32/190 (16%)

Query: 74  VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNT 133
                 +     L  AA+ G    V+ L+            G            +    T
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEVRILMA----------NGADVNAE------DASGWT 49

Query: 134 PLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
           PLH A     +++ ++L+   AD +   + +    TPL +AA  G +EIV  +L+     
Sbjct: 50  PLHLAAFNGHLEIVEVLLKNGADVN---AVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRE 247
                +G T LH A      E+++ L  +      +       DK+G T    +  +G E
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ-------DKFGKTAFDISIDNGNE 159

Query: 248 LTSKLLLDHD 257
             +++L   +
Sbjct: 160 DLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 91.3 bits (228), Expect = 1e-21
 Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 36/162 (22%)

Query: 164 NNETPLYMAAANGSVEIV-------AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQ 216
           +    L  AA  G  + V       A +  +          G T LH A +    E+++ 
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAE-------DASGWTPLHLAAFNGHLEIVEV 65

Query: 217 LFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MT 271
           L  +              D  G TPL  AA  G     ++LL +    A +   D    T
Sbjct: 66  LLKNGADVNAV-------DHAGMTPLRLAALFGHLEIVEVLLKNG---ADVNANDMEGHT 115

Query: 272 ALHLAAASGHIMVVDRILSSCDGCCAKV---DERGWNFLHFA 310
            LHLAA  GH+ +V+ +L +  G  A V   D+ G      +
Sbjct: 116 PLHLAAMFGHLEIVEVLLKN--G--ADVNAQDKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.1 bits (173), Expect = 2e-14
 Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 55/164 (33%)

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRE 247
            H G D    L  A      + ++ L  +      +       D  GWTPLH AA++G  
Sbjct: 8   HHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAE-------DASGWTPLHLAAFNGHL 60

Query: 248 LTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNF 306
              ++LL +    A +   D   MT L LAA  GH+ +V+ +L +  G  A V+      
Sbjct: 61  EIVEVLLKNG---ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN--G--ADVNAN---- 109

Query: 307 LHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
                                           D+ G+TPLH+ A
Sbjct: 110 --------------------------------DMEGHTPLHLAA 121

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  106 bits (267), Expect = 2e-26
 Identities = 43/218 (19%), Positives = 67/218 (30%), Gaps = 44/218 (20%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
               L  AA  G+  +V+  +K               ++       NEE  T LH A+  
Sbjct: 21  PLVLLLDAALTGELEVVQQAVK----------EMNDPSQP------NEEGITALHNAICG 64

Query: 142 RSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV-------AKILQKCPSPA 192
            +  +   LI   A+ +   S + +  TPL+ AA+     I        A I     S  
Sbjct: 65  ANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS-- 119

Query: 193 HEGPDGKTALHAAVYTYPT--EVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTS 250
               DG TA            +    L   E+      + +      L   +    E   
Sbjct: 120 ----DGATAFEKCDPYREGYADCATYLADVEQSMG---LMNSGAVYALWDYS---AEFGD 169

Query: 251 KLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDR 287
           +L     +S   +  +D    T    AA  G    V R
Sbjct: 170 ELSFREGESVT-VLRRDGPEETDWWWAALHGQEGYVPR 206

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 92.3 bits (230), Expect = 2e-21
 Identities = 38/220 (17%), Positives = 62/220 (28%), Gaps = 42/220 (19%)

Query: 148 KILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA 205
           + ++     P     A  N    L  AA  G +E+V + +++   P+    +G TALH A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 206 VYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAA 261
           +      ++  L                 D +GWTPLH AA     +    L+ H    A
Sbjct: 62  ICGANYSIVDFLITAGANVNSP-------DSHGWTPLHCAASCNDTVICMALVQHG---A 111

Query: 262 FIGGKDRN--MTALHLAAAS--GHIMVVDRILSSCDGCCAKVDER---GWNFLHFA---- 310
            I     +   TA         G+      +          +          L       
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCATYLADV----EQSMGLMNSGAVYALWDYSAEF 167

Query: 311 MVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
              L   +   + +              D    T     A
Sbjct: 168 GDELSFREGESVTVL-----------RRDGPEETDWWWAA 196

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 85.4 bits (212), Expect = 5e-19
 Identities = 33/176 (18%), Positives = 51/176 (28%), Gaps = 28/176 (15%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           Q + +G + LH A    + +IV FLI            G            +    TPLH
Sbjct: 49  QPNEEGITALHNAICGANYSIVDFLI----------TAGANVNSP------DSHGWTPLH 92

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNN-ETPLYMAAA--NGSVEIVAKILQKCPSP 191
            A       +   L+   A      +   ++  T          G  +    +     S 
Sbjct: 93  CAASCNDTVICMALVQHGAAIF---ATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRE 247
                    AL      +  E+    F   E  ++   RD    T    AA  G+E
Sbjct: 150 GLMNSGAVYALWDYSAEFGDEL---SFREGESVTVLR-RDGPEETDWWWAALHGQE 201

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  104 bits (261), Expect = 2e-26
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 17/159 (10%)

Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
              L EA R    D  +IL+        + +    +PL++AA  G       +L+   S 
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRE 247
                  +T LH A       +++ L  H      K       D    T LH A     +
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-------DMLKMTALHWATEHNHQ 113

Query: 248 LTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVV 285
              +LL+ +    A +  + +   TA  ++  +G+  + 
Sbjct: 114 EVVELLIKYG---ADVHTQSKFCKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 98.6 bits (247), Expect = 2e-24
 Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 47/185 (25%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
               L  AA+ G    V+ L+            G           T+    +PLH A + 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMA----------NGAPFT-------TDWLGTSPLHLAAQY 44

Query: 142 RSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV-------AKILQKCPSPA 192
                 ++L+          +  + + TPL+MAA+ G   IV       A +  K     
Sbjct: 45  GHFSTTEVLLRAGVSRD---ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK----- 96

Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGREL 248
                  TALH A      EV++ L  +      +        K+  T    +  +G E 
Sbjct: 97  --DMLKMTALHWATEHNHQEVVELLIKYGADVHTQ-------SKFCKTAFDISIDNGNED 147

Query: 249 TSKLL 253
            +++L
Sbjct: 148 LAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 89.8 bits (224), Expect = 2e-21
 Identities = 39/155 (25%), Positives = 55/155 (35%), Gaps = 23/155 (14%)

Query: 164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH--- 220
           +    L  AA  G  + V +IL    +P      G + LH A         + L      
Sbjct: 1   DLGKKLLEAARAGQDDEV-RILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 221 -EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAA 278
            + +        K   TPLH AA  G     ++LL H    A +  KD   MTALH A  
Sbjct: 60  RDAR-------TKVDRTPLHMAASEGHANIVEVLLKHG---ADVNAKDMLKMTALHWATE 109

Query: 279 SGHIMVVDRILSSCDGCCAKVDER---GWNFLHFA 310
             H  VV+ ++    G  A V  +          +
Sbjct: 110 HNHQEVVELLIKY--G--ADVHTQSKFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.7 bits (172), Expect = 2e-14
 Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 54/158 (34%)

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH---EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
           D    L  A      + ++ L  +             D  G +PLH AA  G   T+++L
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-------DWLGTSPLHLAAQYGHFSTTEVL 53

Query: 254 LDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMV 312
           L           + +   T LH+AA+ GH  +V+ +L       A V+ +          
Sbjct: 54  LRAG---VSRDARTKVDRTPLHMAASEGHANIVEVLLK----HGADVNAK---------- 96

Query: 313 SLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
                                     D+   T LH   
Sbjct: 97  --------------------------DMLKMTALHWAT 108

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  104 bits (262), Expect = 2e-26
 Identities = 44/191 (23%), Positives = 64/191 (33%), Gaps = 46/191 (24%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           +++ D  L  AAK GD   VK L            + V   +          Q+TPLH A
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCT---------VQSVNCRDI------EGRQSTPLHFA 49

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV-------AKILQKCP 189
                V V + L+   AD H   + ++    PL+ A + G  E+        A +     
Sbjct: 50  AGYNRVSVVEYLLQHGADVH---AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-- 104

Query: 190 SPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSG 245
                     T LH A      E+ K L  H     +K       ++ G TPL       
Sbjct: 105 -----DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK-------NRDGNTPLDLVKDGD 152

Query: 246 RELTSKLLLDH 256
            +    LL   
Sbjct: 153 TD-IQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  100 bits (251), Expect = 7e-25
 Identities = 46/171 (26%), Positives = 59/171 (34%), Gaps = 30/171 (17%)

Query: 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIV------ 181
           N E +  L EA +   V+  K L                TPL+ AA    V +V      
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 182 -AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWT 236
            A +  K          G   LH A      EV + L  H              D + +T
Sbjct: 65  GADVHAK-------DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-------DLWKFT 110

Query: 237 PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVD 286
           PLH AA  G+    KLLL H    A    K+R+  T L L    G   + D
Sbjct: 111 PLHEAAAKGKYEICKLLLQHG---ADPTKKNRDGNTPLDL-VKDGDTDIQD 157

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 88.6 bits (221), Expect = 8e-21
 Identities = 47/198 (23%), Positives = 65/198 (32%), Gaps = 58/198 (29%)

Query: 161 ANRNN--ETPLYMAAANGSVEIVAKILQKCPSPAHEG-PDGKTALHAAVYTYPTEVIKQL 217
           A  N+  +  L  AA  G VE V K+         +      T LH A       V++ L
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 218 FLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTA 272
             H      K       DK G  PLH+A   G    ++LL+ H    A +   D    T 
Sbjct: 62  LQHGADVHAK-------DKGGLVPLHNACSYGHYEVAELLVKHG---AVVNVADLWKFTP 111

Query: 273 LHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNS 332
           LH AAA G   +   +L    G  A   ++                              
Sbjct: 112 LHEAAAKGKYEICKLLLQH--G--ADPTKK------------------------------ 137

Query: 333 RLLIAEDVNGNTPLHVVA 350
                 + +GNTPL +V 
Sbjct: 138 ------NRDGNTPLDLVK 149

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  103 bits (260), Expect = 3e-26
 Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 20/170 (11%)

Query: 128 NEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
            E     L  A     ++    L+    + +   + N    T L      G+ EI  ++L
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVN---AQNGFGRTAL-QVMKLGNPEIARRLL 57

Query: 186 QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHA 241
            +  +P  +   G   +H A      + ++ L         +       D  G  PLH A
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-------DNEGNLPLHLA 110

Query: 242 AYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
           A  G     + L+ H   A+ +G ++    TA  LA   G   VV  + +
Sbjct: 111 AKEGHLRVVEFLVKHT--ASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 97.8 bits (245), Expect = 3e-24
 Identities = 34/190 (17%), Positives = 63/190 (33%), Gaps = 48/190 (25%)

Query: 81  KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR 140
              + L  AA +GD   +  L+          Q  V    +      N    T L    +
Sbjct: 4   PWGNELASAAARGDLEQLTSLL----------QNNVNVNAQ------NGFGRTALQVM-K 46

Query: 141 LRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV-------AKILQKCPSP 191
           L + ++A+ L++  A+P +    +R     ++ AA  G ++ +       A +  +    
Sbjct: 47  LGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE---- 99

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLH-----EEKRSLTAVRDKYGWTPLHHAAYSGR 246
                +G   LH A       V++ L  H       +       +  G T    A   GR
Sbjct: 100 ---DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR-------NHKGDTACDLARLYGR 149

Query: 247 ELTSKLLLDH 256
                L+  +
Sbjct: 150 NEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 91.7 bits (229), Expect = 6e-22
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 16/152 (10%)

Query: 164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH--- 220
                L  AAA G +E +  +LQ   +   +   G+TAL         E+ ++L L    
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGAN 62

Query: 221 -EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAA 278
            + K       D+ G+  +H AA +G   T + LL+     A +  +D      LHLAA 
Sbjct: 63  PDLK-------DRTGFAVIHDAARAGFLDTLQTLLEFQ---ADVNIEDNEGNLPLHLAAK 112

Query: 279 SGHIMVVDRILSSCDGCCAKVDERGWNFLHFA 310
            GH+ VV+ ++          + +G      A
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.9 bits (162), Expect = 5e-13
 Identities = 28/159 (17%), Positives = 43/159 (27%), Gaps = 56/159 (35%)

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
                L +A      E +  L  +      +       + +G T L        E  ++ 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQ-------NGFGRTALQVMKLGNPE-IARR 55

Query: 253 LLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAM 311
           LL      A    KDR     +H AA +G +  +  +L       A V+           
Sbjct: 56  LLLRG---ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ----ADVNIE--------- 99

Query: 312 VSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
                                      D  GN PLH+ A
Sbjct: 100 ---------------------------DNEGNLPLHLAA 111

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 62.4 bits (153), Expect = 1e-11
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 19/108 (17%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
           D  G + +H AA+ G    ++ L++F A     D                  E N PLH 
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED-----------------NEGNLPLHL 109

Query: 138 AVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
           A +   + V + L+          N   +T   +A   G  E+V  ++
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV-SLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.5 bits (104), Expect = 3e-05
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 15/73 (20%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D +G+ PLHLAAK+G   +V+FL+K              +   +     N + +T    A
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK----------HTASNVGHR-----NHKGDTACDLA 144

Query: 139 VRLRSVDVAKILI 151
                 +V  ++ 
Sbjct: 145 RLYGRNEVVSLMQ 157

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  103 bits (260), Expect = 6e-26
 Identities = 36/203 (17%), Positives = 56/203 (27%), Gaps = 50/203 (24%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           +   +G     +  K G +                      +A+         E  TP  
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSY-------------IAAD------VVSEYETPWW 49

Query: 137 EAVRLRSVDVAKILIV-ADPHVPYSANRNNETPLYMAAANGSVEIV-------AKILQKC 188
            A R         L+   D     + + N  T L   A  GS + V       A +  + 
Sbjct: 50  TAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR- 105

Query: 189 PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYS 244
                +   G TALH A      EV++ L       E +       D+ G T L  A   
Sbjct: 106 -----DMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-------DERGLTALELAREI 153

Query: 245 GRELTSKLLLDHDKSAAFIGGKD 267
            +       +        IG + 
Sbjct: 154 LKTTPKGNPMQF---GRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 99.9 bits (250), Expect = 1e-24
 Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 33/176 (18%)

Query: 127 TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQ 186
           T  E         +                V        ETP + AA     + ++++L 
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLL- 64

Query: 187 KCPSPAHEGPD-------GKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGW 235
                  E  D       G+TAL         + ++ L       + +        + G 
Sbjct: 65  -------EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD------MRGGL 111

Query: 236 TPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
           T LH AA   R    + L++     A I  +D   +TAL LA            + 
Sbjct: 112 TALHMAAGYVRPEVVEALVELG---ADIEVEDERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 91.0 bits (227), Expect = 2e-21
 Identities = 33/159 (20%), Positives = 52/159 (32%), Gaps = 27/159 (16%)

Query: 161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH 220
                     +   +G               A    + +T    A      + + QL L 
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIA---ADVVSEYETPWWTAARKADEQALSQL-LE 65

Query: 221 ----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN--MTALH 274
               +         D+ G T L   A  G +   +LL +     A +  +D    +TALH
Sbjct: 66  DRDVDAV-------DENGRTALLFVAGLGSDKCVRLLAEAG---ADLDHRDMRGGLTALH 115

Query: 275 LAAASGHIMVVDRILSSCDGCCAKV---DERGWNFLHFA 310
           +AA      VV+ ++    G  A +   DERG   L  A
Sbjct: 116 MAAGYVRPEVVEALVEL--G--ADIEVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 20/143 (13%), Positives = 30/143 (20%), Gaps = 38/143 (26%)

Query: 221 EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASG 280
           E  + + +     G          G   +                     T    AA   
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-----VSEYETPWWTAARKA 55

Query: 281 HIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAE-- 338
               + ++L   D   A  DE G   L F                               
Sbjct: 56  DEQALSQLLEDRD-VDAV-DENGRTALLFV------------------AGLGSDKCVRLL 95

Query: 339 -----DVN------GNTPLHVVA 350
                D++      G T LH+ A
Sbjct: 96  AEAGADLDHRDMRGGLTALHMAA 118

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  101 bits (255), Expect = 1e-25
 Identities = 37/181 (20%), Positives = 62/181 (34%), Gaps = 31/181 (17%)

Query: 81  KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR 140
           +    L  AA +GD   V+ L+          +  V           N    T L   + 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLL---------HRELVHPDAL------NRFGKTALQVMMF 45

Query: 141 LRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
             S  +A  L+   A P+V    + +  +P++ AA  G ++ +  +++           G
Sbjct: 46  -GSTAIALELLKQGASPNV---QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG 101

Query: 199 KTALHAAVYTYPTEVIKQLFLH---EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLD 255
              +H AV    T V+  L        +       D  G TPL  A   G +    +L  
Sbjct: 102 ALPIHLAVQEGHTAVVSFLAAESDLHRR-------DARGLTPLELALQRGAQDLVDILQG 154

Query: 256 H 256
           H
Sbjct: 155 H 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 98.6 bits (247), Expect = 2e-24
 Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 17/164 (10%)

Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
              L  A     V   + L+  +   P + NR  +T L      GS  I  ++L++  SP
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASP 61

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRE 247
             +   G + +H A  T   + +K L  H              D  G  P+H A   G  
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-------DGTGALPIHLAVQEGHT 114

Query: 248 LTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
                L       + +  +D   +T L LA   G   +VD +  
Sbjct: 115 AVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 94.4 bits (236), Expect = 6e-23
 Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 25/155 (16%)

Query: 165 NETPLYMAAANGSVEIVAKILQKCPSPAHE-GPDGKTALHAAVYTYPTEVIKQLFLH--- 220
               L  AAA G V+ V ++L +           GKTAL   ++   T +  +L      
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS-TAIALELLKQGAS 60

Query: 221 -EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAA 278
              +       D  G +P+H AA +G   T K+L++H    A +   D      +HLA  
Sbjct: 61  PNVQ-------DTSGTSPVHDAARTGFLDTLKVLVEHG---ADVNVPDGTGALPIHLAVQ 110

Query: 279 SGHIMVVDRILSSCDGCCAKVDER---GWNFLHFA 310
            GH  VV  + +      + +  R   G   L  A
Sbjct: 111 EGHTAVVSFLAAE-----SDLHRRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 65.5 bits (161), Expect = 8e-13
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 27/114 (23%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN---TP 134
            D  G SP+H AA+ G    +K L++               A+       N        P
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVE-------------HGAD------VNVPDGTGALP 104

Query: 135 LHEAVRLRSVDVAKILIV-ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK 187
           +H AV+     V   L   +D H     +    TPL +A   G+ ++V  ILQ 
Sbjct: 105 IHLAVQEGHTAVVSFLAAESDLHR---RDARGLTPLELALQRGAQDLV-DILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.5 bits (109), Expect = 6e-06
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 21/90 (23%)

Query: 268 RNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHP 327
           R    L  AAA G +  V R+L         ++  G   L             G      
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM--------MFG----ST 48

Query: 328 TVRNSRLLI-------AEDVNGNTPLHVVA 350
            +  +  L+        +D +G +P+H  A
Sbjct: 49  AI--ALELLKQGASPNVQDTSGTSPVHDAA 76

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  103 bits (258), Expect = 6e-25
 Identities = 40/216 (18%), Positives = 69/216 (31%), Gaps = 41/216 (18%)

Query: 76  FQADAKGDSPLHLAA---KKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN 132
           F+  + G + L  A      G    +  L+  A+K            E       +    
Sbjct: 40  FREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK-------TGNMREFINSPFRDVYYR 92

Query: 133 --TPLHEAVRLRSVDVAKILI-------------VADPHVPYSANRNNETPLYMAAANGS 177
             T LH A+  R     ++L+                P          E PL +AA    
Sbjct: 93  GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

Query: 178 VEIVAKILQKCPSPAH---EGPDGKTALHAAVY---------TYPTEVIKQLFLH----E 221
             IV  + +     A    +   G T LHA V           + T++   L +      
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212

Query: 222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
              +L A+ +  G +PL  AA +G+    + ++  +
Sbjct: 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 94.1 bits (234), Expect = 8e-22
 Identities = 39/247 (15%), Positives = 68/247 (27%), Gaps = 49/247 (19%)

Query: 85  PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS- 143
            L     +G    ++ L+ F     + L    +       G       T L +A+   S 
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLT--DEEFREPSTG------KTCLPKALLNLSA 59

Query: 144 --VDVAKILIVADPHVPYSANRNN----------ETPLYMAAANGSVEIV-------AKI 184
              D   IL+             N          +T L++A        V       A +
Sbjct: 60  GRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119

Query: 185 LQKC-------PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP 237
             +                 G+  L  A  T    ++  L  +  K++    +D  G T 
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTV 179

Query: 238 LHHAAYSGRELTS---------KLLLDHD----KSAAFIGGKDRN-MTALHLAAASGHIM 283
           LH                     LLL                + + ++ L +AA +G I 
Sbjct: 180 LHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG 239

Query: 284 VVDRILS 290
           +   I+ 
Sbjct: 240 IFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 85.6 bits (212), Expect = 6e-19
 Identities = 42/230 (18%), Positives = 69/230 (30%), Gaps = 45/230 (19%)

Query: 165 NETPLYMAAANGSVEIVAKILQKCPS--------PAHEGPDGKTALHAAVYTYP---TEV 213
           N   L+   + GS + +  +L    +           E   GKT L  A+        + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 214 IKQLFLHEEKRSLTAV--------RDKYGWTPLHHAAYSGRELTSKLLLDH-------DK 258
           I  L    EK                  G T LH A     +   +LL++         +
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 259 SAAFIGGKDRNM-----TALHLAAASGHIMVVDRILSSCDGCCAKV---DERGWNFLHFA 310
              F    +          L LAA +    +V   L+      A +   D RG   LH  
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIV-HYLTENGHKQADLRRQDSRGNTVLHAL 183

Query: 311 MVSLD--------LLQSSGLVIKHPTVRNSRLLIAEDVN--GNTPLHVVA 350
           +   D        + +   L++           +   +N  G +PL + A
Sbjct: 184 VAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (257), Expect = 6e-25
 Identities = 49/273 (17%), Positives = 82/273 (30%), Gaps = 42/273 (15%)

Query: 3   RKLFEAAAKGDIEPFREIAR--DELESIVTDLMNNTVLYGNITASHL-TLQTEEG--EIV 57
            +LF   ++G  E    +          +TD        G  T      L  ++G    +
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGK-TCLMKAVLNLQDGVNACI 62

Query: 58  SVSTKFVEHILDLSPSVLFQADAK---GDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQ 113
               +  +   +  P V  Q   +   G S LH+A +K     VK L++  A    R   
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA-- 120

Query: 114 RGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILI-----VADPHVPYSANRNNETP 168
                  ++  G        PL  A   +  DV   L+      A        +    T 
Sbjct: 121 --CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA---TDSLGNTV 175

Query: 169 LYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTA 228
           L+                             +AL   +Y    ++  +L        L  
Sbjct: 176 LHALVMIADNS-----------------PENSALVIHMYDGLLQMGARLC---PTVQLEE 215

Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAA 261
           + +  G TPL  AA  G+    + +L  + S A
Sbjct: 216 ISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  101 bits (253), Expect = 2e-24
 Identities = 39/249 (15%), Positives = 63/249 (25%), Gaps = 54/249 (21%)

Query: 85  PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS- 143
            L     +G    +  L+++ +   + L     +              T L +AV     
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE--------GSTGKTCLMKAVLNLQD 56

Query: 144 --VDVAKILIVADPHVPYSANRNN----------ETPLYMAAANGSVEIV---------- 181
                   L+  D          N           + L++A    S++ V          
Sbjct: 57  GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116

Query: 182 ---AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL 238
              A               G+  L  A  T   +V+  L  +  + +     D  G T L
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

Query: 239 HH----------------AAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGH 281
           H                   Y G       L             +   +T L LAA  G 
Sbjct: 177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTV---QLEEISNHQGLTPLKLAAKEGK 233

Query: 282 IMVVDRILS 290
           I +   IL 
Sbjct: 234 IEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 76.4 bits (188), Expect = 9e-16
 Identities = 42/247 (17%), Positives = 64/247 (25%), Gaps = 67/247 (27%)

Query: 165 NETPLYMAAANGSVEIVAKILQK--------CPSPAHEGPDGKTALHAAVYTYP---TEV 213
           +   L+   + G  E +  +L+           S   EG  GKT L  AV          
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 214 IKQLFLHEEKRSLTAV--------RDKYGWTPLHHAAYSGRELTSKLLLDH-------DK 258
           I  L   ++                   G + LH A         KLL+++         
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 259 SAAFIGGKDRNM----TALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSL 314
              F   +          L LAA +    VV   L       A ++              
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVV-TYLLENPHQPASLE-------------- 166

Query: 315 DLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQELSKNVG 374
                                 A D  GNT LH +  +   S   + L   + +    +G
Sbjct: 167 ----------------------ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG 204

Query: 375 RGQYPNG 381
               P  
Sbjct: 205 ARLCPTV 211

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 92.5 bits (231), Expect = 2e-22
 Identities = 32/166 (19%), Positives = 51/166 (30%), Gaps = 19/166 (11%)

Query: 125 GMTNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVA 182
           G + E     L  A     V+  + L+   A+P+     N     P+ +    GS  +  
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALLEAGANPNA---PNSYGRRPIQVMM-MGSARVAE 61

Query: 183 KILQKCPSPAHEGPDGKT-ALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA 241
            +L     P    P   T  +H A      + +    LH     L   RD +G  P+  A
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV--VLHRAGARLDV-RDAWGRLPVDLA 118

Query: 242 AYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVD 286
              G    ++ L                      + AA G   + D
Sbjct: 119 EELGHRDVARYLRAA--------AGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.1 bits (209), Expect = 2e-19
 Identities = 38/159 (23%), Positives = 54/159 (33%), Gaps = 24/159 (15%)

Query: 160 SANRNNE---TPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQ 216
           +A  + E     L  AAA G VE V  +L+   +P      G+  +   +      V + 
Sbjct: 4   AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAEL 62

Query: 217 LFLHEEKRSLTA---VRDKYGWT-PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MT 271
           L LH       A     D    T P+H AA  G   T  +L       A +  +D     
Sbjct: 63  LLLHG------AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG---ARLDVRDAWGRL 113

Query: 272 ALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFA 310
            + LA   GH  V   + +      A    RG N     
Sbjct: 114 PVDLAEELGHRDVARYLRA------AAGGTRGSNHARID 146

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 90.5 bits (226), Expect = 7e-22
 Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 30/139 (21%)

Query: 132 NTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV-------A 182
              L EA R    D  +IL+   AD +   + +    TPLY+A A+G +EIV       A
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVN---AKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 183 KILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPL 238
            +             G T LH A +    E+ + L  H      +       DK+G T  
Sbjct: 72  DVNAV-------DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-------DKFGKTAF 117

Query: 239 HHAAYSGRELTSKLLLDHD 257
             +  +G E  +++L   +
Sbjct: 118 DISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 89.0 bits (222), Expect = 3e-21
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 31/150 (20%)

Query: 153 ADPHVPYSANRNNETPLYMAAANGSVEIV-------AKILQKCPSPAHEGPDGKTALHAA 205
           +  H  + ++      L  AA  G  + V       A +  K          G T L+ A
Sbjct: 4   SHHHHHHGSDLG--KKLLEAARAGQDDEVRILMANGADVNAK-------DEYGLTPLYLA 54

Query: 206 VYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAA 261
                 E+++ L  +              D  G+TPLH AA+ G    +++LL H    A
Sbjct: 55  TAHGHLEIVEVLLKNGADVNAV-------DAIGFTPLHLAAFIGHLEIAEVLLKHG---A 104

Query: 262 FIGGKDRN-MTALHLAAASGHIMVVDRILS 290
            +  +D+   TA  ++  +G+  + + +  
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 22/109 (20%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D  G +PL+LA   G   IV+ L+K           G            +    TPLH A
Sbjct: 44  DEYGLTPLYLATAHGHLEIVEVLLK----------NGADVNAV------DAIGFTPLHLA 87

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
             +  +++A++L+   AD +   + ++  +T   ++  NG+ ++  +IL
Sbjct: 88  AFIGHLEIAEVLLKHGADVN---AQDKFGKTAFDISIGNGNEDLA-EIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 39/132 (29%)

Query: 234 GWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSC 292
               L  AA +G++   ++L+ +    A +  KD   +T L+LA A GH+ +V+ +L + 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANG---ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN- 69

Query: 293 DGCCAKVDER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRNS----RLLI-------AE 338
            G  A V+     G+  LH A                           +L+       A+
Sbjct: 70  -G--ADVNAVDAIGFTPLHLA-----------------AFIGHLEIAEVLLKHGADVNAQ 109

Query: 339 DVNGNTPLHVVA 350
           D  G T   +  
Sbjct: 110 DKFGKTAFDISI 121

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 94.3 bits (234), Expect = 2e-21
 Identities = 39/238 (16%), Positives = 78/238 (32%), Gaps = 38/238 (15%)

Query: 58  SVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVK 117
           S+  +  +   +   ++    D  G++PLH      +  +VK L+K           G  
Sbjct: 107 SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK----------HGSN 156

Query: 118 SAERQMLGMTNEEQNTPLHEAVR----LRSVDVAKILIVADPHVPYSANRNNETPLYMAA 173
                     +    + L +AV+      S     +L    P +    +  N T L+   
Sbjct: 157 RLYG------DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL-ILEDSMNRTILHHII 209

Query: 174 ANGSVE------------IVAKILQKCPSPAHEGPDGKTALH-AAVYTYPTEVIKQLFLH 220
               +             ++  I++K   P   G + K +            +++ L L 
Sbjct: 210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269

Query: 221 EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAA 277
               ++   +D  G T L+ AA  G       LLD+    A     +++ +  +   A
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG---ADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 80.5 bits (198), Expect = 1e-16
 Identities = 32/259 (12%), Positives = 78/259 (30%), Gaps = 34/259 (13%)

Query: 110 RDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPL 169
           +++   + +                 H +      +V         ++    + +  TPL
Sbjct: 76  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 135

Query: 170 YMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYT---YPTEVIKQLFLHEEKRSL 226
           +   +  ++E+V  +++   +  +    G++ L  AV +   Y +   + L   +     
Sbjct: 136 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL--DYLYPC 193

Query: 227 TAVRDKYGWTPLHHAA----YSGRELTSKLLLDH------DKSAAFIGGKDRNMTALHLA 276
             + D    T LHH       +G    +K  LD        K    I        +    
Sbjct: 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253

Query: 277 AASGHIMVVDRILSSCDGCCAKVDER---GWNFLHFAMV--SLDLLQSSGLVIKH---PT 328
                   +   L         ++ +   G   L+ A    ++ ++     ++ +   P 
Sbjct: 254 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD---ALLDYGADPF 310

Query: 329 VRNSRLLIAEDVNGNTPLH 347
           + N         +G  P+ 
Sbjct: 311 IANK--------SGLRPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.3 bits (143), Expect = 8e-10
 Identities = 35/219 (15%), Positives = 55/219 (25%), Gaps = 43/219 (19%)

Query: 136 HEAVRLRSVDVAKILIVADPHVPYSANRNN--ETPLYMAAANGSVEIVAKILQKCPSPAH 193
           H+          KI+      V     +    E  L         E+   +     +   
Sbjct: 32  HDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNS 91

Query: 194 EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
           EG           +    + +   F +  + +L    D++G TPLH           K L
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLNLNIPVDEHGNTPLHWLTSIANLELVKHL 150

Query: 254 LDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMV 312
           + H    +     D    + L  A  S +            G    +             
Sbjct: 151 VKHG---SNRLYGDNMGESCLVKAVKSVNNYDS--------GTFEAL------------- 186

Query: 313 SLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAA 351
            LD L                 LI ED    T LH +  
Sbjct: 187 -LDYLYPC--------------LILEDSMNRTILHHIII 210

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 87.9 bits (219), Expect = 6e-21
 Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 16/141 (11%)

Query: 127 TNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKI 184
           TN    T LH A     +   + L+   +DP+V    +    TPL+ A  +G +++V  +
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELL 62

Query: 185 LQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHH 240
           LQ        G    + LH A      +++K L  +              + +G  P+ +
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV-------NIFGLRPVDY 115

Query: 241 AAYSGRELTSKLLLDHDKSAA 261
                 +    L   ++ S+A
Sbjct: 116 TDDESMKSLLLLPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 85.9 bits (214), Expect = 3e-20
 Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 15/130 (11%)

Query: 161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH 220
            N   ET L++A+  G +  V  +LQ    P  +   G T LH A      +V++ L  H
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 221 ----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHL 275
                              +PLH AA +G     KLLL +    A     +   +  +  
Sbjct: 66  KALVNTT-------GYQNDSPLHDAAKNGHVDIVKLLLSYG---ASRNAVNIFGLRPVDY 115

Query: 276 AAASGHIMVV 285
                   ++
Sbjct: 116 TDDESMKSLL 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 72.5 bits (179), Expect = 1e-15
 Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 22/122 (18%)

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
            G+T LH A        ++ L  +      K       D  GWTPLH A   G     +L
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPNVK-------DHAGWTPLHEACNHGHLKVVEL 61

Query: 253 LLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNFLH 308
           LL H    A +        + LH AA +GH+ +V  +LS   G  A  +     G   + 
Sbjct: 62  LLQHK---ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY--G--ASRNAVNIFGLRPVD 114

Query: 309 FA 310
           + 
Sbjct: 115 YT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.1 bits (152), Expect = 8e-12
 Identities = 29/137 (21%), Positives = 44/137 (32%), Gaps = 41/137 (29%)

Query: 230 RDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRI 288
            +  G T LH A+  G   + + LL +    +    KD    T LH A   GH+ VV+ +
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNG---SDPNVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 289 LSSCDGCCAKVDER---GWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAE------- 338
           L       A V+       + LH A                   +N  + I +       
Sbjct: 63  LQH--K--ALVNTTGYQNDSPLHDA------------------AKNGHVDIVKLLLSYGA 100

Query: 339 DVN-----GNTPLHVVA 350
             N     G  P+    
Sbjct: 101 SRNAVNIFGLRPVDYTD 117

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 86.6 bits (216), Expect = 1e-20
 Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 15/127 (11%)

Query: 164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH--- 220
           N  TPL++AA NG +E+V  +L+       +  +G+T LH A      EV+K L      
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 221 -EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAA 278
              K       DK G TPLH AA +G     KLLL+     A +  KD+N  T LHLAA 
Sbjct: 61  VNAK-------DKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAAR 110

Query: 279 SGHIMVV 285
           +GH+ VV
Sbjct: 111 NGHLEVV 117

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 86.2 bits (215), Expect = 2e-20
 Identities = 47/138 (34%), Positives = 64/138 (46%), Gaps = 30/138 (21%)

Query: 132 NTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV-------A 182
            TPLH A R   ++V K+L+   AD +     ++N  TPL++AA NG +E+V       A
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 183 KILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPL 238
            +  K         +G+T LH A      EV+K L         K       DK G TPL
Sbjct: 60  DVNAK-------DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-------DKNGRTPL 105

Query: 239 HHAAYSGRELTSKLLLDH 256
           H AA +G     KLLL+ 
Sbjct: 106 HLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 64.3 bits (158), Expect = 1e-12
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 22/110 (20%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
            D  G +PLHLAA+ G   +VK L++               A+   +   ++   TPLH 
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLE-------------AGAD---VNAKDKNGRTPLHL 74

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
           A R   ++V K+L+   AD +   + ++N  TPL++AA NG +E+V K+L
Sbjct: 75  AARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVV-KLL 120

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 86.0 bits (214), Expect = 3e-20
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH 220
              +++  L  AAA G VE V ++L+    P      G+  +   +     +V + L LH
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLH 66

Query: 221 EEKRSLTA---VRDKYGWT-PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHL 275
                  A     D    T P+H AA  G   T  +L       A +   D      + L
Sbjct: 67  G------AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG---ARLDVCDAWGRLPVDL 117

Query: 276 AAASGHIMVVDRILS 290
           A   GH  +   + +
Sbjct: 118 AEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 77.9 bits (193), Expect = 2e-17
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 10/132 (7%)

Query: 128 NEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
               +  L  A     V+  + L+   ADP+     NR    P+ +    GS ++   +L
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPNA---LNRFGRRPIQVMM-MGSAQVAELLL 64

Query: 186 QKCPSPAHEGPDGKT-ALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYS 244
                P    P   T  +H A      + +    LH     L    D +G  P+  A   
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLV--VLHRAGARLDV-CDAWGRLPVDLAEEQ 121

Query: 245 GRELTSKLLLDH 256
           G    ++ L   
Sbjct: 122 GHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 59.4 bits (145), Expect = 7e-11
 Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 34/135 (25%)

Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDR 287
           +        L  AA  G+  T + LL+     A     +R     + +    G   V + 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAG---ADPNALNRFGRRPIQV-MMMGSAQVAEL 62

Query: 288 ILSSCDGCCAKV---DERGWNF-LHFAMVSLDLLQSSGLVIKHPTVRNSRLLI------- 336
           +L    G  A+    D       +H A          G            +L        
Sbjct: 63  LLLH--G--AEPNCADPATLTRPVHDAA-------REG----FLDT--LVVLHRAGARLD 105

Query: 337 AEDVNGNTPLHVVAA 351
             D  G  P+  +A 
Sbjct: 106 VCDAWGRLPVD-LAE 119

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 24/112 (21%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPL 135
             +  G  P+ +    G A + + L+   A+    D                      P+
Sbjct: 40  ALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCAD----------------PATLTRPV 82

Query: 136 HEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
           H+A R   +D   +L    A   V    +     P+ +A   G  +I  + L
Sbjct: 83  HDAAREGFLDTLVVLHRAGARLDV---CDAWGRLPVDLAEEQGHRDIA-RYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 16/68 (23%)

Query: 84  SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS 143
            P+H AA++G    +  L +               A    L + +     P+  A     
Sbjct: 80  RPVHDAAREGFLDTLVVLHR-------------AGAR---LDVCDAWGRLPVDLAEEQGH 123

Query: 144 VDVAKILI 151
            D+A+ L 
Sbjct: 124 RDIARYLH 131

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 84.0 bits (209), Expect = 1e-19
 Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 19/131 (14%)

Query: 162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH- 220
               +     A  NG ++ V   + K          G+  LH A      E+++ L L  
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 221 ---EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH--DKSAAFIGGKDRN-MTALH 274
                        DK+  TPL  A Y G     KLLL    DK+      K  + +TA  
Sbjct: 64  ADINAP-------DKHHITPLLSAVYEGHVSCVKLLLSKGADKTV-----KGPDGLTAFE 111

Query: 275 LAAASGHIMVV 285
                    ++
Sbjct: 112 ATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 75.1 bits (186), Expect = 1e-16
 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 21/136 (15%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
            D     A K GD   VK  +              K  +   +  T E    PLH A   
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVA-------------KGED---VNRTLEGGRKPLHYAADC 50

Query: 142 RSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGK 199
             +++ + L++  AD +     ++++ TPL  A   G V  V  +L K      +GPDG 
Sbjct: 51  GQLEILEFLLLKGADINA---PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL 107

Query: 200 TALHAAVYTYPTEVIK 215
           TA  A        +++
Sbjct: 108 TAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.5 bits (148), Expect = 1e-11
 Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 23/107 (21%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
               G  PLH AA  G   I++FL+   A     D                 +   TPL 
Sbjct: 36  TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD-----------------KHHITPLL 78

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV 181
            AV    V   K+L+   AD  V      +  T            ++
Sbjct: 79  SAVYEGHVSCVKLLLSKGADKTV---KGPDGLTAFEATDNQAIKALL 122

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 84.7 bits (210), Expect = 3e-19
 Identities = 27/189 (14%), Positives = 61/189 (32%), Gaps = 36/189 (19%)

Query: 84  SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS 143
             +  AA  G       L +          +G +  E       +  ++  L++ +R  +
Sbjct: 8   RTVSAAAMLGTYEDFLELFE----------KGYEDKE-------SVLKSNILYDVLRNNN 50

Query: 144 ----VDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKI------LQKCPSP 191
                 ++  LI   AD        +   T  +     G  +I          L+K    
Sbjct: 51  DEARYKISMFLINKGADIKS---RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI 107

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHE----EKRSLTAVRDKYGWTPLHHAAYSGRE 247
                  K  +   ++ Y  +  + + L++    +      ++DK+G T L       + 
Sbjct: 108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167

Query: 248 LTSKLLLDH 256
           +  K++ D+
Sbjct: 168 IALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 80.5 bits (199), Expect = 8e-18
 Identities = 20/170 (11%), Positives = 43/170 (25%), Gaps = 14/170 (8%)

Query: 133 TPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS 190
             +  A  L + +    L     +       +      L         +I   ++ K   
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 191 PAHEGPDGKTALHAAVYTYPTEVIKQLFLHE---EKRSLTAVRDKYGWTPLHHAAYSG-- 245
                 +G T           ++     L +   EK +      K     +    ++   
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV 127

Query: 246 ----RELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
                    KL+     S   +  KD+  +TAL         + +  +  
Sbjct: 128 DENEMIPLYKLIFSQ--SGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 28/200 (14%), Positives = 52/200 (26%), Gaps = 47/200 (23%)

Query: 160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQL-- 217
           S   +    +  AA  G+ E   ++ +K              L+  +     E   ++  
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESV-LKSNILYDVLRNNNDEARYKISM 59

Query: 218 FLHEEKRSLTAVRDKYGWTPLHHAAYSGRE------LTSKLLLDHDKSAAFIGGKDRN-M 270
           FL  +   + + R K G T        G           K+ L+     A I    +   
Sbjct: 60  FLINKGADIKS-RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG---ADITALYKPYK 115

Query: 271 TALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVR 330
             +     +  +   + I                       +   +   SGL +      
Sbjct: 116 IVVFKNIFNYFVDENEMIP----------------------LYKLIFSQSGLQLL----- 148

Query: 331 NSRLLIAEDVNGNTPLHVVA 350
                  +D  G T L  V 
Sbjct: 149 ------IKDKWGLTALEFVK 162

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 83.1 bits (205), Expect = 2e-17
 Identities = 32/231 (13%), Positives = 62/231 (26%), Gaps = 32/231 (13%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
             A+      LAA+ G   ++  L +              +   +++ M   E       
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCE-------------LAPT-EIMAMIQAENYHAFRL 169

Query: 138 AVRLRSVDVAKILI--VADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           A     + V   L               N     + A   G   ++  +L      A+  
Sbjct: 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229

Query: 196 PDGKTALHAAVYTYPTEVIKQLF-LHEEKRS---------LTAVRDKYGWTPLHHAAYSG 245
                     V  +    + +L  +H+  +          +T      G+  L +     
Sbjct: 230 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 289

Query: 246 RE-----LTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
            E     +   L +   K+ A       +    L LA   G+      +LS
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 340

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 79.2 bits (195), Expect = 4e-16
 Identities = 34/249 (13%), Positives = 66/249 (26%), Gaps = 40/249 (16%)

Query: 128 NEEQNTPLHEAVR---LRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKI 184
             +       A       ++D   +L+ +D  V       N     +AA NG + ++ ++
Sbjct: 89  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRL 147

Query: 185 LQKCPSP--AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA 242
            +  P+   A    +   A   A       V+ +L       +   +     +     AA
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI-QAENYYAFRWAA 206

Query: 243 YS-GRELTSKLLLDH-------DKSAAFIG-------------GKDRNMTALHLAAASGH 281
              G       LLD        +      G                    A  L+   G 
Sbjct: 207 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 266

Query: 282 IMVVDRILSSCDGCCAKVDERGWNFLHFAMVS--LDLLQSSGLVIKHPTVRNSRLLIAED 339
             +V                +G+  L   +      LL     ++  P ++         
Sbjct: 267 FDLVT----------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP 316

Query: 340 VNGNTPLHV 348
            + N  L +
Sbjct: 317 GDANELLRL 325

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 72.7 bits (178), Expect = 5e-14
 Identities = 34/239 (14%), Positives = 66/239 (27%), Gaps = 22/239 (9%)

Query: 123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGS---VE 179
            L  T   +       +     +     + +D H        +E   ++AA  G    ++
Sbjct: 53  FLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAH---KKGIKSEVICFVAAITGCSSALD 109

Query: 180 IVAKILQKCPSPAHEGPDGKTALH-AAVYTYPTEVIKQLFLHEEKRSLTAVRDKY--GWT 236
            +  +L           +   A   AA   +   V+ +L    E      +       + 
Sbjct: 110 TLCLLLTSDEIVKVIQAENYQAFRLAAENGH-LHVLNRLC---ELAPTEIMAMIQAENYH 165

Query: 237 PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAAS-GHIMVVDRILSSCDGC 295
               AA +G       L +   + A    +  N  A   AA   GH  V+   L  C   
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI-NFLLDCPVM 224

Query: 296 CAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVR----NSRLLIAE---DVNGNTPLH 347
            A  +   + +    +        + L   H   +    +    +      + G   L 
Sbjct: 225 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLR 283

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 33/235 (14%), Positives = 61/235 (25%), Gaps = 55/235 (23%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
             A+      LAA+ G   ++  L + A  +                 M   E       
Sbjct: 159 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATA--------------MIQAENYYAFRW 204

Query: 138 AVRLRS-VDVAKILIVADPHVPYS---------------------ANRNNETPLYMAAAN 175
           A   R   +V   L+     + Y+                       +       ++  +
Sbjct: 205 AAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPD 264

Query: 176 GSVEIVAKILQKCPSPAHEGPDGKTALHAAVY---TYPTEVIKQLFLHEEKRSL--TAVR 230
           G  ++V K          E   G   L   +        + I+ L      ++L  TA  
Sbjct: 265 GVFDLVTK---------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 315

Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVV 285
                  L  A   G +    LLL      + +     N    ++    G + + 
Sbjct: 316 PGDANELLRLALRLGNQGACALLLSIP---SVLALTKAN--NYYINETGGRLDLR 365

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 12/110 (10%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
               +G   L    ++ D  ++   I+F    P  ++                + N  L 
Sbjct: 273 SECLQGFYMLRNLIRRNDEVLLD-DIRFLLSIP-GIKALAP------TATIPGDANELLR 324

Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQ 186
            A+RL +     +L+     +P           Y+    G +++ A  L+
Sbjct: 325 LALRLGNQGACALLL----SIPSVLALTKANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 28/166 (16%), Positives = 47/166 (28%), Gaps = 30/166 (18%)

Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRE---LTSKLL 253
           +    L    Y +     KQL+      S    +          AA +G      T  LL
Sbjct: 61  EQVRQLLCLYYAHYNRNAKQLW------SDAHKKGIKSEVICFVAAITGCSSALDTLCLL 114

Query: 254 LDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSC-DGCCAKVDERGWNFLHFA-- 310
           L  D+    I     N  A  LAA +GH+ V++R+         A +    ++    A  
Sbjct: 115 LTSDEIVKVIQ--AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 172

Query: 311 -----MVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAA 351
                +++   L           ++                   A 
Sbjct: 173 NGHLHVLN--RLCELAPTEATAMIQA---------ENYYAFRWAAV 207

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 76.6 bits (190), Expect = 3e-17
 Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 29/126 (23%)

Query: 161 ANRNNETPLYMAAANGSVEIV-------AKILQKCPSPAHEGPDGKTALHAAVYTYPTEV 213
            +++  TPL+ AA NG  E V       A +  +         DG T LH A      E+
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-------SKDGNTPLHLAAKNGHAEI 57

Query: 214 IKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN 269
           +K L         +        K G TP H A  +G     KLL       A +  +   
Sbjct: 58  VKLLLAKGADVNAR-------SKDGNTPEHLAKKNGHHEIVKLLDAKG---ADVNARSWG 107

Query: 270 -MTALH 274
                H
Sbjct: 108 SSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.9 bits (188), Expect = 6e-17
 Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
           DG T LH A      E +K+L         +        K G TPLH AA +G     KL
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-------SKDGNTPLHLAAKNGHAEIVKL 60

Query: 253 LLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDER---GWNFLH 308
           LL      A +  + ++  T  HLA  +GH  +V  + +   G  A V+ R     +  H
Sbjct: 61  LLAKG---ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK--G--ADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.1 bits (186), Expect = 1e-16
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 16/119 (13%)

Query: 128 NEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
           +++ NTPLH A +    +  K L+   AD +   + +++  TPL++AA NG  EIV  +L
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 186 QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHH 240
            K         DG T  H A      E++K L         +               HH
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR-------SWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.0 bits (165), Expect = 7e-14
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 35/136 (25%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
                G++PLH AAK G A  VK L+           +G     R      +++ NTPLH
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLS----------KGADVNAR------SKDGNTPLH 47

Query: 137 EAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV-------AKILQK 187
            A +    ++ K+L+   AD +     +++  TP ++A  NG  EIV       A +  +
Sbjct: 48  LAAKNGHAEIVKLLLAKGADVNA---RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

Query: 188 CPSPAHEGPDGKTALH 203
                          H
Sbjct: 105 -------SWGSSHHHH 113

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 69.7 bits (172), Expect = 4e-15
 Identities = 39/96 (40%), Positives = 48/96 (50%), Gaps = 19/96 (19%)

Query: 197 DGKTALHAAVYTYPTEVIKQLFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
           +G+T LH A      EV+K L         K       DK G TPLH AA +G     KL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-------DKNGRTPLHLAARNGHLEVVKL 53

Query: 253 LLDH--DKSAAFIGGKDRN-MTALHLAAASGHIMVV 285
           LL+   D +A     KD+N  T LHLAA +GH+ VV
Sbjct: 54  LLEAGADVNA-----KDKNGRTPLHLAARNGHLEVV 84

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 64.7 bits (159), Expect = 2e-13
 Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 25/104 (24%)

Query: 164 NNETPLYMAAANGSVEIV-------AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQ 216
           N  TPL++AA NG +E+V       A +  K         +G+T LH A      EV+K 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-------DKNGRTPLHLAARNGHLEVVKL 53

Query: 217 LFLH----EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
           L         K       DK G TPLH AA +G     KLLL+ 
Sbjct: 54  LLEAGADVNAK-------DKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 62.4 bits (153), Expect = 2e-12
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 22/106 (20%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
           G +PLHLAA+ G   +VK L++               A+   +   ++   TPLH A R 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE-------------AGAD---VNAKDKNGRTPLHLAARN 45

Query: 142 RSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
             ++V K+L+   AD +     ++N  TPL++AA NG +E+V K+L
Sbjct: 46  GHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVV-KLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.3 bits (101), Expect = 2e-05
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 18/75 (24%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
            D  G +PLHLAA+ G   +VK L++  A    +D                 +   TPLH
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-----------------KNGRTPLH 73

Query: 137 EAVRLRSVDVAKILI 151
            A R   ++V K+L+
Sbjct: 74  LAARNGHLEVVKLLL 88

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 18/120 (15%)

Query: 172 AAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH----EEKRSLT 227
            +++      + ++ +    +H G D    L  A      + ++ L  +      K    
Sbjct: 1   GSSHHHHHHSSGLVPRG---SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK---- 53

Query: 228 AVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVD 286
              DK G TPLH AA +G     KLLL+     A +  +D+   TA  ++  +G+  + +
Sbjct: 54  ---DKNGSTPLHLAARNGHLEVVKLLLEAG---ADVXAQDKFGKTAFDISIDNGNEDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 24/131 (18%)

Query: 89  AAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAK 148
            +          L+           RG              +    L EA R    D  +
Sbjct: 1   GSSHHHHHHSSGLVP----------RGSH---------MGSDLGKKLLEAARAGQDDEVR 41

Query: 149 ILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV 206
           IL+   AD     + ++N  TPL++AA NG +E+V  +L+       +   GKTA   ++
Sbjct: 42  ILMANGADVA---AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98

Query: 207 YTYPTEVIKQL 217
                ++ + L
Sbjct: 99  DNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
            +     L  AA+ G    V+ L+                A+   +   ++  +TPLH A
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMA-------------NGAD---VAAKDKNGSTPLHLA 64

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQ 186
            R   ++V K+L+   AD     + ++  +T   ++  NG+ ++  +ILQ
Sbjct: 65  ARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFDISIDNGNEDLA-EILQ 110

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 185 LQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYS 244
           L +    A+     +TALH AV +     +  +    +       +   G T LH+   +
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215

Query: 245 GRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSS 291
                 KLLL   +  A I   + +  T L +A    H    + +  +
Sbjct: 216 DNAECLKLLL---RGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.9 bits (137), Expect = 4e-09
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 18/111 (16%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
                ++ LHLA +  D   +  +          +Q          L     + +T LH 
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFL-------VQNSGN------LDKQTGKGSTALHY 211

Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQ 186
                + +  K+L+   A   +    N + ETPL +A           + Q
Sbjct: 212 CCLTDNAECLKLLLRGKASIEIA---NESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 43  TASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLI 102
           TA HL +++ +   + +    V++  +L      +   KG + LH      +A  +K L 
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLD-----KQTGKGSTALHYCCLTDNAECLKLL- 224

Query: 103 KFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA 153
                    L+          + + NE   TPL  A RL+     ++L  A
Sbjct: 225 ---------LRGKAS------IEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 103 KFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN 162
           ++A+K+  D    + S    +             + V L                  + +
Sbjct: 118 RYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTE-----------KIPLANGH 166

Query: 163 RNNETPLYMAAANG---SVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFL 219
             +ET L++A  +    S+ IV  ++Q   +   +   G TALH    T   E +K L  
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 220 HEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
               ++   + ++ G TPL  A     E   +LL 
Sbjct: 227 G---KASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 4e-08
 Identities = 65/463 (14%), Positives = 140/463 (30%), Gaps = 113/463 (24%)

Query: 1   MDRKLFEAAAKGDIE-PFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSV 59
           MD   FE    G+ +  +++I     ++ V +     V   ++  S L+   EE      
Sbjct: 7   MD---FET---GEHQYQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILS--KEE------ 50

Query: 60  STKFVEHILDLSPSVLFQAD-------AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDL 112
               ++HI+  S   +           +K +  +    ++      KFL+   K + R  
Sbjct: 51  ----IDHIIM-SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 113 QRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLY-M 171
               +    Q   + N+ Q    +   RL+     +  +                 +  +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-------LELRPAKNVLIDGV 158

Query: 172 AAANGSVEIVAKILQKCPSPAHEGPDGKTA-LHAAVYTYPTEVIKQL--FLHEEKRSLTA 228
             +  +  +   +            D K   L+      P  V++ L   L++   + T+
Sbjct: 159 LGSGKTW-VALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 229 VRDKYGWTPLH-HAAYSG--RELTSK------LLLDH--DKSA--AFIGG-------KDR 268
             D      L  H+  +   R L SK      L+L +  +  A  AF          + +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 269 NMTALHLAAASGHIMVVDR-----------ILSSCDGCCAKVDE-----RGWNFLHFAMV 312
            +T    AA + HI +              +L     C  +  +        N    +++
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLPREVLTTNPRRLSII 333

Query: 313 SLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVV-AAVCRLSHRVAGLPQEIQEL-- 369
                      I+            + VN +    ++ +++  L       P E +++  
Sbjct: 334 --------AESIRDGLATWDNW---KHVNCDKLTTIIESSLNVLE------PAEYRKMFD 376

Query: 370 -----SKNVGRGQYPNGILRV--QKEKDSVDEEALKEMQ--SL 403
                  +      P  +L +       S     + ++   SL
Sbjct: 377 RLSVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.8 bits (129), Expect = 5e-08
 Identities = 29/116 (25%), Positives = 38/116 (32%), Gaps = 24/116 (20%)

Query: 71  SPSVLFQADAKGDSPLHLAAKKGDAA---IVKFLIKFAKKQPRDLQRGVKSAERQMLGMT 127
            P     A A  +  LHLA K  + A   +V F+          +Q G        L   
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI----------IQNGGH------LDAK 222

Query: 128 NEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIV 181
             + NT LH A      D  K+L+   A        N   ET L +A      E  
Sbjct: 223 AADGNTALHYAALYNQPDCLKLLLKGRALVGT---VNEAGETALDIARKKHHKECE 275

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 18/161 (11%)

Query: 154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV---YTYP 210
              +  +    +   +  A ANG         Q  P P  + P  +  LH AV       
Sbjct: 152 PQRLWTAICNRDLLSVLEAFANG-----QDFGQPLPGPDAQAP-EELVLHLAVKVANQAS 205

Query: 211 TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN- 269
             ++  +  +         +   G T LH+AA   +    KLLL   K  A +G  +   
Sbjct: 206 LPLVDFIIQN---GGHLDAKAADGNTALHYAALYNQPDCLKLLL---KGRALVGTVNEAG 259

Query: 270 MTALHLAAASGHIMVVDRILSSCDGCCAKVD--ERGWNFLH 308
            TAL +A    H    + +  +  G  A     +  W    
Sbjct: 260 ETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVIST 300

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 23/97 (23%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
              A G++ LH AA       +K L          L+         ++G  NE   T L 
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLL----------LKGRA------LVGTVNEAGETALD 264

Query: 137 EAVRLRSVDVAKILIVADP-------HVPYSANRNNE 166
            A +    +  ++L  A         HV YS   + E
Sbjct: 265 IARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTE 301

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 22/131 (16%)

Query: 71  SPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEE 130
           +            +PL  A         +FL          LQ G        +   +  
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFL----------LQNGAN------VNQADSA 267

Query: 131 QNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC 188
              PLH A  L    +A + +   AD       +     PL +A    + +IV  +L+  
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGAR---DSEGRDPLTIAMETANADIVT-LLRLA 323

Query: 189 PSPAHEGPDGK 199
                E   G+
Sbjct: 324 KMREAEAAQGQ 334

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 36/192 (18%), Positives = 57/192 (29%), Gaps = 17/192 (8%)

Query: 103 KFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN 162
           KF  K P           R   G    +   P   ++R R   +        P     + 
Sbjct: 146 KFLTKLPEI------RGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSK--PEPPSEDLGSL 197

Query: 163 RNNETPLYMAAANGSVEIVAKILQKCPSP--AHEGPDGKTALHAAVYTYPTEVIKQLFLH 220
                    +    S+  +A  L         + G D  T L  A         + L  +
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257

Query: 221 EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAAS 279
               +     D  G  PLHHA   G    + L L   K  A +G +D      L +A  +
Sbjct: 258 ---GANVNQADSAGRGPLHHATILGHTGLACLFL---KRGADLGARDSEGRDPLTIAMET 311

Query: 280 GHIMVVDRILSS 291
            +  +V  +  +
Sbjct: 312 ANADIVTLLRLA 323

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 25/117 (21%)

Query: 77  QADAKGDSPLHLAAKKGDA---AIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNT 133
            A A  +  LHLA K  +     +V F+I          Q G        L     + NT
Sbjct: 166 DAQAPEELVLHLAVKVANQASLPLVDFII----------QNGGH------LDAKAADGNT 209

Query: 134 PLHEAVRLRSVDVAKILI--VADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC 188
            LH A      D  K+L+   A        N   ET L +A      E   ++L++ 
Sbjct: 210 ALHYAALYNQPDCLKLLLKGRALVGT---VNEAGETALDIARKKHHKECE-ELLEQA 262

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 169 LYMAAANGSVEIVAKILQ-----KCPSPAHEGP-DGKTALHAAVYT--YPTEVIKQLFLH 220
           L+ A  N  +  V +          P P  +     +  LH AV      +  +    + 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 221 EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
                    +   G T LH+AA   +    KLLL  
Sbjct: 196 NGGH--LDAKAADGNTALHYAALYNQPDCLKLLLKG 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	547
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2pnn_A	273	Transient receptor potential cation channel subfa	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.77
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.65

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.4e-47  Score=389.95  Aligned_cols=323  Identities=24%  Similarity=0.311  Sum_probs=200.2

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK   81 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~   81 (547)
                      .++||.|+..|+.+++++|+++|.+++..+..|.|+|       |+|+..  |+.++  +++|++    .+..++.+|..
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~   79 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL-------HMAARA--GHTEV--AKYLLQ----NKAKVNAKAKD   79 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHH-------HHHHHH--TCHHH--HHHHHH----HTCCSSCCCTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHH-------HHHHHc--CCHHH--HHHHHh----CCCCCCCCCCC
Confidence            3689999999999999999999999999888888888       999999  99999  999977    46778889999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhh-------hh----hhHHHHH------hcccccCCCCHhHHHHHcCCH
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQR-------GV----KSAERQM------LGMTNEEQNTPLHEAVRLRSV  144 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-------~~----~~~~~~~------l~~~~~~g~t~Lh~A~~~g~~  144 (547)
                      |.||||+|+..|+.++|++|++++++.......       +.    ....+.+      .+..+..|.||||+|+..|+.
T Consensus        80 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  159 (437)
T 1n11_A           80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV  159 (437)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999998763210000       00    0000001      122334455555555555555


Q ss_pred             HHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccc
Q 008977          145 DVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKR  224 (547)
Q Consensus       145 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  224 (547)
                      +++++|++++++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++.|++.+   
T Consensus       160 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---  235 (437)
T 1n11_A          160 RVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG---  235 (437)
T ss_dssp             HHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---
T ss_pred             HHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---
Confidence            55555555555443 34445555555555555555555555555555555555555555555555555555555222   


Q ss_pred             hhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCC
Q 008977          225 SLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGW  304 (547)
Q Consensus       225 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  304 (547)
                      ...+..+..|.||||+|+..|+.+++++|++++++.+...  ..|.||||+|+..|+.+++++|++++.+. +.+|..|+
T Consensus       236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~  312 (437)
T 1n11_A          236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGY  312 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC--TTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCC
Confidence            2234445555566666666666666666665555544332  23556666666666666666666655543 33455566


Q ss_pred             cHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHh
Q 008977          305 NFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       305 t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                      ||||+|+..++.+      +...+++.++++|.+|..|+||||+|++.
T Consensus       313 t~L~~A~~~g~~~------~v~~Ll~~gad~n~~~~~g~t~L~~A~~~  354 (437)
T 1n11_A          313 TPLHVASHYGNIK------LVKFLLQHQADVNAKTKLGYSPLHQAAQQ  354 (437)
T ss_dssp             CHHHHHHHSSCSH------HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CHHHHHHHcCcHH------HHHHHHhcCCCCCCCCCCCCCHHHHHHHC
Confidence            6666666655532      22344455566666666666666666655

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-46  Score=387.36  Aligned_cols=325  Identities=24%  Similarity=0.271  Sum_probs=280.0

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK   81 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~   81 (547)
                      .++||.|+..|+.+++++|+++|.+++..+.+|+|||       |+|+..  |+.++  +++|++    .+..++..+..
T Consensus        48 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~ga~~~~~~~~  112 (437)
T 1n11_A           48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL-------HCAARI--GHTNM--VKLLLE----NNANPNLATTA  112 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH-------HHHHHH--TCHHH--HHHHHH----HTCCTTCCCTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-------HHHHHC--CCHHH--HHHHHh----CCCCCCCCCCC
Confidence            3689999999999999999999999998888888888       999999  99999  999977    46677778888


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhh-------hh----hhHHHH------HhcccccCCCCHhHHHHHcCCH
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQR-------GV----KSAERQ------MLGMTNEEQNTPLHEAVRLRSV  144 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-------~~----~~~~~~------~l~~~~~~g~t~Lh~A~~~g~~  144 (547)
                      |.||||+|+..|+.++|++|++++.+.......       +.    ....+.      .++..+..|.||||+|+..|+.
T Consensus       113 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  192 (437)
T 1n11_A          113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL  192 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999887654221110       00    011111      1466788999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccc
Q 008977          145 DVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKR  224 (547)
Q Consensus       145 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  224 (547)
                      +++++|++++.+.. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+..+   
T Consensus       193 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~---  268 (437)
T 1n11_A          193 DIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ---  268 (437)
T ss_dssp             HHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT---
T ss_pred             HHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC---
Confidence            99999999999876 67889999999999999999999999999999999999999999999999999999999543   


Q ss_pred             hhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCC
Q 008977          225 SLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGW  304 (547)
Q Consensus       225 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  304 (547)
                      ...+..+..|.||||+|+..|+.+++++|+++|.+.+...  ..|.||||+|+..|+.+++++|++++++. +.+|..|+
T Consensus       269 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~  345 (437)
T 1n11_A          269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT--RMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGY  345 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC--SSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCC--CCCCCHHHHHHHcCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence            4456779999999999999999999999999998876654  45999999999999999999999999886 55699999


Q ss_pred             cHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhc
Q 008977          305 NFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR  354 (547)
Q Consensus       305 t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~  354 (547)
                      ||||+|+..++.+      +...|++.|++++.+|.+|+||||+|++.+.
T Consensus       346 t~L~~A~~~g~~~------iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          346 SPLHQAAQQGHTD------IVTLLLKNGASPNEVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             CHHHHHHHTTCHH------HHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             CHHHHHHHCChHH------HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc
Confidence            9999999999863      4456778899999999999999999998743

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.6e-40  Score=327.86  Aligned_cols=288  Identities=18%  Similarity=0.135  Sum_probs=247.7

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhccc-CCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccccc
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTDL-MNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADA   80 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~-~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~   80 (547)
                      +++|+.|+++|++++|+.|+++|++++..+. .|.|||       |+|+..  |+.++  +++|++    .+..++.++.
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpL-------h~A~~~--g~~~i--v~~Ll~----~ga~~~~~~~   90 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-------HNAVQM--SREDI--VELLLR----HGADPVLRKK   90 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHH-------HHHHHc--CCHHH--HHHHHH----cCCchhhhcc
Confidence            3679999999999999999999999997764 488888       999999  99999  999977    6888889999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC-
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY-  159 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~-  159 (547)
                      .+.+|++.++..++.+++..+++.+.+                ++.+|..|.||||+|+..|+.+++++|+++|++++. 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~  154 (337)
T 4g8k_A           91 NGATPFILAAIAGSVKLLKLFLSKGAD----------------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR  154 (337)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCchhHHHHhcccchhhHHhhhccch----------------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchh
Confidence            999999999999999999999988766                667899999999999999999999999999987653 


Q ss_pred             --------CCCCCCCcHHHHHHHCCCHHHHHHHHH-hCCCCCCCCCCCchHHHHHHhcCC----HHHHHHHHcccccchh
Q 008977          160 --------SANRNNETPLYMAAANGSVEIVAKILQ-KCPSPAHEGPDGKTALHAAVYTYP----TEVIKQLFLHEEKRSL  226 (547)
Q Consensus       160 --------~~~~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~~  226 (547)
                              ..+..|.||||+|+..|+.+++++|++ .|++++..+..|.|++|.++..+.    .+++++|+++   +..
T Consensus       155 ~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~---gad  231 (337)
T 4g8k_A          155 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GAD  231 (337)
T ss_dssp             CCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT---TCC
T ss_pred             hccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC---CCC
Confidence                    234578999999999999999999996 489999999999999998876544    3577888843   445


Q ss_pred             hhhhccCCCcHHhHHHhcCChHHHHHHhcc-CCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCc
Q 008977          227 TAVRDKYGWTPLHHAAYSGRELTSKLLLDH-DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWN  305 (547)
Q Consensus       227 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  305 (547)
                      ++.+|..|+||||+|+..|+.++++.|++. +.+++..  +..|+||||+|++.|+.++|++|+++|++.      ++.+
T Consensus       232 ~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~--d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~------n~~~  303 (337)
T 4g8k_A          232 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT--DSDGKTALLLAVELKLKKIAELLCKRGAST------DCGD  303 (337)
T ss_dssp             TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCB--CTTSCBHHHHHHHTTCHHHHHHHHTTSCSS------TTCC
T ss_pred             CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CCCC
Confidence            677899999999999999999999999985 5666554  346999999999999999999999998765      4568


Q ss_pred             HHHHHHHhcCcccccceeeecccccccccccc
Q 008977          306 FLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIA  337 (547)
Q Consensus       306 ~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~  337 (547)
                      |||+|+++++.+      +..+|+++|+++|.
T Consensus       304 ~L~~A~~~~~~~------iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          304 LVMTARRNYDHS------LVKVLLSHGAKEDF  329 (337)
T ss_dssp             HHHHHHHTTCHH------HHHHHHHTTCCC--
T ss_pred             HHHHHHHcCCHH------HHHHHHHCcCCCCC
Confidence            999999999863      44677888988875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.2e-40  Score=330.97  Aligned_cols=289  Identities=21%  Similarity=0.213  Sum_probs=247.5

Q ss_pred             HHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHH
Q 008977           19 EIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIV   98 (547)
Q Consensus        19 ~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v   98 (547)
                      .+.+.+.+.+.++..+.++|       |.|+..  |+.+.  ++.+   +...+..++.+|..|.||||+|+..|+.++|
T Consensus         9 ~l~~~~~~~~~~~~~~~~~L-------~~A~~~--g~~~~--v~~l---l~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v   74 (351)
T 3utm_A            9 DLADPSAKAVLTGEYKKDEL-------LEAARS--GNEEK--LMAL---LTPLNVNCHASDGRKSTPLHLAAGYNRVRIV   74 (351)
T ss_dssp             ---CHHHHHHHHHHHHHHHH-------HHHHHH--TCHHH--HHHH---CCTTTTTCCCSSTTCCCHHHHHHHTTCHHHH
T ss_pred             hccCCceeeeeeccccchhH-------HHHHHc--CCHHH--HHHH---HHhcCCCcccCCCCCCCHHHHHHHcCCHHHH
Confidence            45556677777777888888       999999  99888  7777   5567888899999999999999999999999


Q ss_pred             HHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCH
Q 008977           99 KFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSV  178 (547)
Q Consensus        99 ~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  178 (547)
                      ++|++++.+                ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.
T Consensus        75 ~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~  137 (351)
T 3utm_A           75 QLLLQHGAD----------------VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRV  137 (351)
T ss_dssp             HHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHcCCC----------------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCH
Confidence            999999876                56789999999999999999999999999999987 7889999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCchHHHHHHh---------------------cCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          179 EIVAKILQKCPSPAHEGPDGKTALHAAVY---------------------TYPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       179 ~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~---------------------~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                      +++++|+++|++++..+..|.+|+++|+.                     .+..+.++.++..   .......+..|.||
T Consensus       138 ~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~t~  214 (351)
T 3utm_A          138 EVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL---EIINFKQPQSHETA  214 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTT---CCTTCCCTTTCCCH
T ss_pred             HHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHh---hcccccCCCCCCCH
Confidence            99999999999999999999999887644                     4455555555522   12233457789999


Q ss_pred             HhHHHhc---CChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhc
Q 008977          238 LHHAAYS---GRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSL  314 (547)
Q Consensus       238 Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  314 (547)
                      ||+|+..   ++.+++++|+++|.+++..+  ..|.||||+|+..|+.+++++|++++.+. +.+|..|+||||+|+..+
T Consensus       215 L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~t~L~~A~~~~  291 (351)
T 3utm_A          215 LHCAVASLHPKRKQVAELLLRKGANVNEKN--KDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAG  291 (351)
T ss_dssp             HHHHHHCCSTTHHHHHHHHHHTTCCTTCCC--TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHhCccHHHHHHHHHHcCCCcCCcC--CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            9999999   55899999999998877654  46999999999999999999999999886 556999999999999999


Q ss_pred             CcccccceeeecccccccccccccccCCCchhHHHH
Q 008977          315 DLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA  350 (547)
Q Consensus       315 ~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~  350 (547)
                      +.+      +...+++.|++++.+|.+|+||+|+|.
T Consensus       292 ~~~------~v~~Ll~~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          292 HLQ------TCRLLLSYGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             CHH------HHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred             cHH------HHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence            864      445677889999999999999999974

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5e-40  Score=318.27  Aligned_cols=260  Identities=23%  Similarity=0.229  Sum_probs=227.9

Q ss_pred             eeEeeecCCceecchhhHHHHHhhcCCcccccc-ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHh
Q 008977           46 HLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQA-DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQML  124 (547)
Q Consensus        46 h~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l  124 (547)
                      |.|+..  |+.++  +++|++    .+..++.. +..|.||||+|+..|+.+++++|++++.+                +
T Consensus        10 ~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~   65 (285)
T 1wdy_A           10 IKAVQN--EDVDL--VQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD----------------P   65 (285)
T ss_dssp             HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------T
T ss_pred             HHHHHc--CCHHH--HHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------------C
Confidence            999999  99999  999966    44555555 88899999999999999999999998876                5


Q ss_pred             cccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCC----------
Q 008977          125 GMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE----------  194 (547)
Q Consensus       125 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~----------  194 (547)
                      +.++..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..          
T Consensus        66 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  144 (285)
T 1wdy_A           66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL  144 (285)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHT
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhh
Confidence            5678899999999999999999999999999887 77889999999999999999999999999998876          


Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCC----hHHHHHHhccCCCcceecCCCCCc
Q 008977          195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR----ELTSKLLLDHDKSAAFIGGKDRNM  270 (547)
Q Consensus       195 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~g~  270 (547)
                      +..|.||||.|+..++.+++++|+  ...+...+..|..|.||||+|+..++    .+++++|+++|.+++..+  ..|.
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll--~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~--~~g~  220 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG--ERGK  220 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHH--HTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCC--TTSC
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHH--HhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcC--CCCC
Confidence            778999999999999999999999  33355677889999999999999999    899999999998876554  4599


Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeeccccccccccccccc
Q 008977          271 TALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDV  340 (547)
Q Consensus       271 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~  340 (547)
                      ||||+|+..|+.+++++|++..+...+.+|.+|+||||+|++.++.+      +...+.+.|++++.+|.
T Consensus       221 t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~------i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK------IAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH------HHHHHHHHSSCSCCSSC
T ss_pred             cHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHH------HHHHHHHcCCCCCcccc
Confidence            99999999999999999999544445777999999999999998853      44677788999988874

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.8e-39  Score=313.01  Aligned_cols=259  Identities=19%  Similarity=0.166  Sum_probs=234.7

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhc-ccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccccc
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVT-DLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADA   80 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~-~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~   80 (547)
                      +++|+.|++.|+.+.+++|+++|.+++.. +..|.|+|       |+|+..  |+.++  +++|++    .+..++..|.
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~   70 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-------HNAVQM--SREDI--VELLLR----HGADPVLRKK   70 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCT
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHH-------HHHHHc--CCHHH--HHHHHH----cCCCCcccCC
Confidence            36899999999999999999999988877 66788888       999999  99999  999977    5777888999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  160 (547)
                      .|.||||+|+..|+.+++++|++++.+                ++.++..|.||||+|+..|+.+++++|++++++++..
T Consensus        71 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  134 (285)
T 1wdy_A           71 NGATPFLLAAIAGSVKLLKLFLSKGAD----------------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR  134 (285)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC----------------CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccc
Confidence            999999999999999999999999876                5677899999999999999999999999999988743


Q ss_pred             C---------CCCCCcHHHHHHHCCCHHHHHHHHHh-CCCCCCCCCCCchHHHHHHhcCC----HHHHHHHHcccccchh
Q 008977          161 A---------NRNNETPLYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYTYP----TEVIKQLFLHEEKRSL  226 (547)
Q Consensus       161 ~---------~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~~  226 (547)
                      .         +..|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..++    .+++++|+++   +..
T Consensus       135 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~---g~~  211 (285)
T 1wdy_A          135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GAD  211 (285)
T ss_dssp             CCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT---TCC
T ss_pred             cccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHc---CCC
Confidence            2         77899999999999999999999998 99999999999999999999999    8999999944   344


Q ss_pred             hhhhccCCCcHHhHHHhcCChHHHHHHhc-cCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCcc
Q 008977          227 TAVRDKYGWTPLHHAAYSGRELTSKLLLD-HDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCC  296 (547)
Q Consensus       227 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  296 (547)
                      ++.+|..|+||||+|+..|+.+++++|++ .|.+++..+  ..|.||||+|++.|+.+++++|+++|++..
T Consensus       212 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~--~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD--SDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCC--TTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccC--CCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            66789999999999999999999999999 787776553  469999999999999999999999998863

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-40  Score=335.16  Aligned_cols=303  Identities=19%  Similarity=0.178  Sum_probs=216.3

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK   81 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~   81 (547)
                      ..+|+.|+..|+.+.++.++++..+..    .-.+++       .-+...  |+.+.  +++++.         ...+..
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~--g~~~~--~~~~~~---------~~~~~~   93 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYG-------NGNDFL--GDFNH--TNLQIP---------TEPEPE   93 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCCccccchhhhhhhhcccc----CccccC-------CCCCcc--ccccc--cccccc---------cCCCCC
Confidence            457788888888888888887653332    112233       566666  77777  666533         346889


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccc-cCCCCHhHHHHHcCCHHHHHHHH--------h
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTN-EEQNTPLHEAVRLRSVDVAKILI--------V  152 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~iv~~Ll--------~  152 (547)
                      |.||||+|+..|+ +++++|++.  +                ++.+| ..|.||||+|+..|+.+++++|+        +
T Consensus        94 g~t~L~~Aa~~~~-~~~~~L~~~--~----------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~  154 (373)
T 2fo1_E           94 SPIKLHTEAAGSY-AITEPITRE--S----------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA  154 (373)
T ss_dssp             CCCHHHHHHHSSS-CCCSCCSTT--T----------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH
T ss_pred             CccHHHHHhcCCc-hHHHHhccc--c----------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999654 788777542  1                45566 78999999999999998877776        7


Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhcc
Q 008977          153 ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDK  232 (547)
Q Consensus       153 ~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~  232 (547)
                      .|.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+.++......+..|.
T Consensus       155 ~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~  233 (373)
T 2fo1_E          155 AGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  233 (373)
T ss_dssp             TCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             cCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence            888887 7899999999999999999999999999999999999999999999999999999999965544456778899


Q ss_pred             CCCcHHhHHHhcC---ChHHHHHHhccCCCcceec------CCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCC
Q 008977          233 YGWTPLHHAAYSG---RELTSKLLLDHDKSAAFIG------GKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERG  303 (547)
Q Consensus       233 ~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  303 (547)
                      .|.||||+|+..+   +.+++++|+++|.+.+...      .+..|.||||+|+..|+.+++++|++.++...+.+|.+|
T Consensus       234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g  313 (373)
T 2fo1_E          234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  313 (373)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence            9999999999998   8999999999998876521      344799999999999999999999999866667889999


Q ss_pred             CcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhc
Q 008977          304 WNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR  354 (547)
Q Consensus       304 ~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~  354 (547)
                      +||||+|+..++.+      +...|++.|++++.+|..|+||||+|+..+.
T Consensus       314 ~TpL~~A~~~g~~~------iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~  358 (373)
T 2fo1_E          314 KTPIMLAAQEGRIE------VVMYLIQQGASVEAVDATDHTARQLAQANNH  358 (373)
T ss_dssp             CCHHHHHHHHTCHH------HHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHH------HHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence            99999999999864      4456777899999999999999999998743

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.2e-39  Score=321.64  Aligned_cols=300  Identities=22%  Similarity=0.230  Sum_probs=243.5

Q ss_pred             HHHHHHHHcCCchHHHHHhhh-hhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977            3 RKLFEAAAKGDIEPFREIARD-ELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK   81 (547)
Q Consensus         3 ~~L~~A~~~g~~~~l~~ll~~-~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~   81 (547)
                      ++|+.|++.|+.+.++.++.. +.+++..+..|+|||       |+|+..  |+.++  +++|++    .+..++.+|..
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~   90 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL-------HLAAGY--NRVRI--VQLLLQ----HGADVHAKDKG   90 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTT
T ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHH-------HHHHHc--CCHHH--HHHHHH----cCCCCCccCCC
Confidence            689999999999999999886 788888888999999       999999  99999  999977    57888999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA  161 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  161 (547)
                      |.||||+|+..|+.+++++|++++++                ++.+|..|.||||+|+..|+.+++++|+++|++.. ..
T Consensus        91 g~t~L~~A~~~g~~~iv~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~  153 (351)
T 3utm_A           91 GLVPLHNACSYGHYEVTELLLKHGAC----------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LV  153 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             CCcHHHHHHHCCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cc
Confidence            99999999999999999999999876                56778999999999999999999999999999987 77


Q ss_pred             CCCCCcHHHHH---------------------HHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhc---CCHHHHHHH
Q 008977          162 NRNNETPLYMA---------------------AANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYT---YPTEVIKQL  217 (547)
Q Consensus       162 ~~~g~tpL~~A---------------------~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~---~~~~~v~~L  217 (547)
                      +..|.+|+++|                     +..+..+.++.++.........+..|.||||+|+..   +..+++++|
T Consensus       154 ~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~L  233 (351)
T 3utm_A          154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL  233 (351)
T ss_dssp             CTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHH
T ss_pred             cCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHH
Confidence            88999987764                     566777777777777766666778899999999999   557899999


Q ss_pred             HcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccc
Q 008977          218 FLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA  297 (547)
Q Consensus       218 l~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  297 (547)
                      +..   +..++.+|..|+||||+|+..|+.+++++|+++|.+++..+  ..|.||||+|+..|+.+++++|++++++. +
T Consensus       234 l~~---g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d--~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~  307 (351)
T 3utm_A          234 LRK---GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD--SLGQTALHRAALAGHLQTCRLLLSYGSDP-S  307 (351)
T ss_dssp             HHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-T
T ss_pred             HHc---CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--CCCCCHHHHHHHcCcHHHHHHHHHcCCCC-C
Confidence            943   44567789999999999999999999999999998887654  46999999999999999999999999886 5


Q ss_pred             cccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhh
Q 008977          298 KVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVC  353 (547)
Q Consensus       298 ~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~  353 (547)
                      .+|..|+||+|+|.....          ..+.+.   ......++.+++..|++.|
T Consensus       308 ~~~~~g~tal~~a~~~~~----------~~l~~~---~~~~~~~~~~~l~~A~~~g  350 (351)
T 3utm_A          308 IISLQGFTAAQMGNEAVQ----------QILSES---TPMRTSDVDYRLLEASKAG  350 (351)
T ss_dssp             CCCTTSCCHHHHSCHHHH----------HHHHHC----------------------
T ss_pred             CcCCCCCChhhhhhHHHH----------HHHHhc---cccccCcceeehhhhhccC
Confidence            679999999999843321          122221   1234567788888888764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.5e-38  Score=316.12  Aligned_cols=274  Identities=22%  Similarity=0.207  Sum_probs=238.5

Q ss_pred             CCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccccc-CCChHHHHHHHcCCHHHHHHHHHHhhcCCch
Q 008977           33 MNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADA-KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRD  111 (547)
Q Consensus        33 ~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~-~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~  111 (547)
                      +|+|+|       |.|+..  |+.++  |++|++    .+.+++.++. .|+||||+||..|+.++|++|+++|++    
T Consensus        24 ~~~t~L-------~~Av~~--g~~~~--V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~----   84 (337)
T 4g8k_A           24 EDNHLL-------IKAVQN--EDVDL--VQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD----   84 (337)
T ss_dssp             HHHHHH-------HHHHHT--TCHHH--HHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----
T ss_pred             CCChHH-------HHHHHc--CCHHH--HHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc----
Confidence            456666       999999  99999  999977    4677777665 599999999999999999999999987    


Q ss_pred             hhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCC
Q 008977          112 LQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP  191 (547)
Q Consensus       112 ~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~  191 (547)
                                  ++.++..+.++++.++..+..++++.+++.+++++ ..|..|.||||+|+..|+.+++++|+++|+++
T Consensus        85 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~  151 (337)
T 4g8k_A           85 ------------PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANV  151 (337)
T ss_dssp             ------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ------------hhhhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Confidence                        56779999999999999999999999999999987 78999999999999999999999999999887


Q ss_pred             CC----------CCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCC----hHHHHHHhccC
Q 008977          192 AH----------EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR----ELTSKLLLDHD  257 (547)
Q Consensus       192 ~~----------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~~  257 (547)
                      +.          .+..|.||||+|+..|+.+++++|+  ...+..++.+|..|.||+|.++..+.    .+++++|+++|
T Consensus       152 ~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL--~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g  229 (337)
T 4g8k_A          152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG  229 (337)
T ss_dssp             TCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHH--HHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT
T ss_pred             chhhccccccccccCCCCcHHHHHHHCCCHHHHHHHH--hccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC
Confidence            65          3456899999999999999999999  44456678889999999999887654    46889999999


Q ss_pred             CCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccc
Q 008977          258 KSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIA  337 (547)
Q Consensus       258 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~  337 (547)
                      ++++..+.  .|.||||+|+..|+.++++.|++.....++.+|.+|+||||+|++.|+.+      +...|++.|+++|.
T Consensus       230 ad~n~~d~--~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~------iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          230 ADVNVRGE--RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK------IAELLCKRGASTDC  301 (337)
T ss_dssp             CCTTCCCG--GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHH------HHHHHHTTSCSSTT
T ss_pred             CCCCCcCC--CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHH------HHHHHHHCCCCCCC
Confidence            98876543  59999999999999999999999866666788999999999999999864      44567788887765


Q ss_pred             cccCCCchhHHHHHhh
Q 008977          338 EDVNGNTPLHVVAAVC  353 (547)
Q Consensus       338 ~d~~G~T~Lh~A~~~~  353 (547)
                           .||||+|++.+
T Consensus       302 -----~~~L~~A~~~~  312 (337)
T 4g8k_A          302 -----GDLVMTARRNY  312 (337)
T ss_dssp             -----CCHHHHHHHTT
T ss_pred             -----CCHHHHHHHcC
Confidence                 46999999874

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=308.30  Aligned_cols=245  Identities=19%  Similarity=0.152  Sum_probs=196.3

Q ss_pred             CCCceeccCCccceeEeeecCCceecchhhHHHHHhhc-------CCccccccccCCChHHHHHHHcCCHHHHHHHHHHh
Q 008977           33 MNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDL-------SPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFA  105 (547)
Q Consensus        33 ~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~-------~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~  105 (547)
                      .|.|++       |+|+..  |+.+.  +..++..-..       -...++.+|.+|.||||+|+..|+.++|++|++.+
T Consensus        14 ~~~~~l-------H~Aa~~--g~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g   82 (285)
T 3d9h_A           14 LVPRGS-------HMASMD--GKQGG--MDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG   82 (285)
T ss_dssp             ---------------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHH-------HHHhhc--CCCCC--cccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            666777       999999  99766  5554331100       12335678999999999999999999999999988


Q ss_pred             hcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHH
Q 008977          106 KKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL  185 (547)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  185 (547)
                      .+                ++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+
T Consensus        83 ~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll  145 (285)
T 3d9h_A           83 WA----------------VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLL  145 (285)
T ss_dssp             CC----------------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CC----------------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHH
Confidence            76                66789999999999999999999999999999987 78999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecC
Q 008977          186 QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGG  265 (547)
Q Consensus       186 ~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~  265 (547)
                      ++|++++..+ .|.||||+|+..|+.+++++|++++   ..++.+|..|+||||+|+..|+.+++++|+++|++.+.   
T Consensus       146 ~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~---  218 (285)
T 3d9h_A          146 QHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG---GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ---  218 (285)
T ss_dssp             HTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTT---CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC---
T ss_pred             HCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC---
Confidence            9999987644 5999999999999999999999443   44677899999999999999999999999999988873   


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHh
Q 008977          266 KDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVS  313 (547)
Q Consensus       266 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  313 (547)
                      +..|.||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+.+
T Consensus       219 ~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          219 GKGQDSPLHAVVRTASEELACLLMDFGADT-QAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSCTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHhcCc
Confidence            447999999999999999999999998876 56799999999999844

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.1e-38  Score=304.60  Aligned_cols=254  Identities=20%  Similarity=0.174  Sum_probs=192.0

Q ss_pred             ccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhC
Q 008977           75 LFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVAD  154 (547)
Q Consensus        75 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~  154 (547)
                      ++.+|.+|+||||+|+..|+.++|++|++.+++..             .++.++..|.||||+|+..|+.+++++|+++|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g   68 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE-------------YLDLQNDLGQTALHLAAILGEASTVEKLYAAG   68 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG-------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc-------------cccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46689999999999999999999999999887531             26678999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCC-------------CCCCCchHHHHHHhcCCHHHHHHHHccc
Q 008977          155 PHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH-------------EGPDGKTALHAAVYTYPTEVIKQLFLHE  221 (547)
Q Consensus       155 ~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~-------------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~  221 (547)
                      ++++ ..+..|.||||+|+..|+.+++++|++++++...             ....+.++++.+...+.......++  .
T Consensus        69 a~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  145 (282)
T 1oy3_D           69 AGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD--E  145 (282)
T ss_dssp             CCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------C--C
T ss_pred             CCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhh--h
Confidence            9987 7889999999999999999999999999876432             2234566777776665554444443  3


Q ss_pred             ccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccC
Q 008977          222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDE  301 (547)
Q Consensus       222 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~  301 (547)
                      ..+...+.++..|.||||+|+..|+.+++++|+++|++++..... .|.||||+|+..|+.+++++|++++++. +.+|.
T Consensus       146 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~  223 (282)
T 1oy3_D          146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT-CGRTPLHLAVEAQAASVLELLLKAGADP-TARMY  223 (282)
T ss_dssp             CGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             hhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc
Confidence            445567788999999999999999999999999999988765432 5999999999999999999999998886 56799


Q ss_pred             CCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHh
Q 008977          302 RGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       302 ~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                      .|+||||+|+..++.+      +...+++.|++++.+|.+|+|||++|...
T Consensus       224 ~g~tpL~~A~~~~~~~------~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          224 GGRTPLGSALLRPNPI------LARLLRAHGAPEPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             TSCCHHHHHHTSSCHH------HHHHHHHTTCCCCCCC-------------
T ss_pred             CCCCHHHHHHHcCCcH------HHHHHHHcCCCcCcCCCcccccccccCCc
Confidence            9999999999999853      44677889999999999999999998765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1e-37  Score=296.91  Aligned_cols=236  Identities=22%  Similarity=0.196  Sum_probs=176.2

Q ss_pred             hhhhhcccCCCceeccCCccceeEeeecCC-------------ceecchhhHHHHHhhcCCccccccccCCChHHHHHHH
Q 008977           25 LESIVTDLMNNTVLYGNITASHLTLQTEEG-------------EIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAK   91 (547)
Q Consensus        25 ~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g-------------~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~   91 (547)
                      +|++.+|.+|.|||       |+|+..  |             +.++  +++|++   .+.......|..|.||||+|+.
T Consensus         1 ~dvn~~d~~g~tpL-------~~A~~~--g~~~~~~~~~~~~~~~~~--v~~Ll~---~g~~~~~~~d~~g~t~L~~A~~   66 (253)
T 1yyh_A            1 MDVNVRGPDGFTPL-------MIASCS--GGGLETGNSEEEEDAPAV--ISDFIY---QGASLHNQTDRTGETALHLAAR   66 (253)
T ss_dssp             -----------------------------------------------------------------CCCTTSCCHHHHHHH
T ss_pred             CCCCCCCCCCCcHH-------HHHHhc--cccccccchhhcCCChHH--HHHHHH---ccCCcccccCCCCCcHHHHHHH
Confidence            36778888999999       999997  6             7888  888855   3444445678999999999999


Q ss_pred             cCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHH
Q 008977           92 KGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYM  171 (547)
Q Consensus        92 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  171 (547)
                      .|+.++|++|++++++                ++.++..|.||||+|+..|+.+++++|++.++......+..|.||||+
T Consensus        67 ~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  130 (253)
T 1yyh_A           67 YSRSDAAKRLLEASAD----------------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL  130 (253)
T ss_dssp             TTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHH
Confidence            9999999999999876                567789999999999999999999999999884445788999999999


Q ss_pred             HHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHH
Q 008977          172 AAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK  251 (547)
Q Consensus       172 A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~  251 (547)
                      |+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++   +...+.+|..|.||||+|+..|+.++++
T Consensus       131 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN---GANKDMQNNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             HHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999954   3446678999999999999999999999


Q ss_pred             HHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCc
Q 008977          252 LLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGC  295 (547)
Q Consensus       252 ~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  295 (547)
                      +|+++|++.+..+  ..|.||+|+|+++|+.+++++|.+..+..
T Consensus       208 ~Ll~~ga~~~~~d--~~g~tpl~~A~~~g~~~i~~~l~~~~~~~  249 (253)
T 1yyh_A          208 VLLDHFANRDITD--HMDRLPRDIAQERMHHDIVRLLDLEHHHH  249 (253)
T ss_dssp             HHHHTTCCTTCCC--TTCCCHHHHHHHTTCHHHHHHHHC-----
T ss_pred             HHHHcCCCccccc--cCCCCHHHHHHHcCCHHHHHHHHHHhhhc
Confidence            9999999877654  46999999999999999999999876553

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8.8e-38  Score=314.69  Aligned_cols=258  Identities=24%  Similarity=0.247  Sum_probs=225.0

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcc-cCCCceeccCCccceeEeeecCCceecchhhHHHHH----hhcCCcccc
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTD-LMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHI----LDLSPSVLF   76 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~-~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~----~~~~~~~~~   76 (547)
                      .++||.|+..| .++++.|+..  +++..+ ..|.|+|       |+|+..  |+.++  +++|+..    +-..+.+++
T Consensus        95 ~t~L~~Aa~~~-~~~~~~L~~~--~~n~~d~~~g~t~L-------h~Aa~~--g~~~~--v~~Ll~~~~~~ll~~ga~vn  160 (373)
T 2fo1_E           95 PIKLHTEAAGS-YAITEPITRE--SVNIIDPRHNRTVL-------HWIASN--SSAEK--SEDLIVHEAKECIAAGADVN  160 (373)
T ss_dssp             CCHHHHHHHSS-SCCCSCCSTT--TTTTCCCSSCCCHH-------HHHHCT--TCCSC--CTTHHHHHHHHHHHTCCCTT
T ss_pred             ccHHHHHhcCC-chHHHHhccc--cccccCCcCCCCHH-------HHHHHC--CCHHH--HHHHHHHHHHHHHhcCCCCc
Confidence            35799999955 5788777654  455666 6788888       999999  99999  9998631    224688899


Q ss_pred             ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhC--
Q 008977           77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVAD--  154 (547)
Q Consensus        77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~--  154 (547)
                      .+|..|.||||+|+..|+.++|++|++++++                ++.++..|.||||+|+..|+.+++++|++.+  
T Consensus       161 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  224 (373)
T 2fo1_E          161 AMDCDENTPLMLAVLARRRRLVAYLMKAGAD----------------PTIYNKSERSALHQAAANRDFGMMVYMLNSTKL  224 (373)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----------------SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHH
T ss_pred             CCCCCCCCHHHHHHHcChHHHHHHHHHCCCC----------------CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCcc
Confidence            9999999999999999999999999999887                5677999999999999999999999999987  


Q ss_pred             -CCCCCCCCCCCCcHHHHHHHCC---CHHHHHHHHHhCCCCCC--------CCCCCchHHHHHHhcCCHHHHHHHHcccc
Q 008977          155 -PHVPYSANRNNETPLYMAAANG---SVEIVAKILQKCPSPAH--------EGPDGKTALHAAVYTYPTEVIKQLFLHEE  222 (547)
Q Consensus       155 -~~~~~~~~~~g~tpL~~A~~~g---~~~iv~~Ll~~~~~~~~--------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  222 (547)
                       .+++ ..+..|.||||+|+..|   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|+  ..
T Consensus       225 ~~~~~-~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll--~~  301 (373)
T 2fo1_E          225 KGDIE-ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV--GE  301 (373)
T ss_dssp             HHTTS-CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH--HH
T ss_pred             ccChh-hcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHH--Hh
Confidence             5655 77899999999999998   89999999999999875        5678999999999999999999999  44


Q ss_pred             cchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCC
Q 008977          223 KRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDG  294 (547)
Q Consensus       223 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  294 (547)
                      .+...+.+|..|+||||+|+..|+.+++++|+++|++++..+  ..|.||||+|+.+|+.+++++|++++++
T Consensus       302 ~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d--~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD--ATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC--SSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCC--CCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            446678889999999999999999999999999998887654  4599999999999999999999998775

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.6e-37  Score=294.18  Aligned_cols=224  Identities=21%  Similarity=0.184  Sum_probs=168.4

Q ss_pred             cccccccCCChHHHHHHHcC-------------CHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHH
Q 008977           74 VLFQADAKGDSPLHLAAKKG-------------DAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR  140 (547)
Q Consensus        74 ~~~~~~~~g~t~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~  140 (547)
                      +++.+|.+|.||||+|+..|             +.+++++|++.+++.               .+..|..|.||||+|+.
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~---------------~~~~d~~g~t~L~~A~~   66 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL---------------HNQTDRTGETALHLAAR   66 (253)
T ss_dssp             -----------------------------------------------------------------CCCTTSCCHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc---------------ccccCCCCCcHHHHHHH
Confidence            35778999999999999987             899999999987763               23458899999999999


Q ss_pred             cCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCC-CCCCCCCCCchHHHHHHhcCCHHHHHHHHc
Q 008977          141 LRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP-SPAHEGPDGKTALHAAVYTYPTEVIKQLFL  219 (547)
Q Consensus       141 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  219 (547)
                      .|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++++ +++..+..|.||||+|+..++.+++++|++
T Consensus        67 ~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  145 (253)
T 1yyh_A           67 YSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN  145 (253)
T ss_dssp             TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence            999999999999999987 778999999999999999999999999987 888899999999999999999999999994


Q ss_pred             ccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccc
Q 008977          220 HEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKV  299 (547)
Q Consensus       220 ~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  299 (547)
                      .   +..++.+|..|+||||+|+..|+.+++++|+++|++.+..+  ..|.||||+|+..|+.+++++|++++++. +.+
T Consensus       146 ~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~  219 (253)
T 1yyh_A          146 S---HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN--NREETPLFLAAREGSYETAKVLLDHFANR-DIT  219 (253)
T ss_dssp             T---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCC
T ss_pred             c---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHCCCHHHHHHHHHcCCCc-ccc
Confidence            3   44567788999999999999999999999999998877654  46999999999999999999999999886 566


Q ss_pred             cCCCCcHHHHHHHhcCcccc
Q 008977          300 DERGWNFLHFAMVSLDLLQS  319 (547)
Q Consensus       300 d~~g~t~Lh~A~~~~~~~~~  319 (547)
                      |..|+||||+|+++++.+..
T Consensus       220 d~~g~tpl~~A~~~g~~~i~  239 (253)
T 1yyh_A          220 DHMDRLPRDIAQERMHHDIV  239 (253)
T ss_dssp             CTTCCCHHHHHHHTTCHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHH
Confidence            99999999999999986533

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=301.53  Aligned_cols=251  Identities=19%  Similarity=0.168  Sum_probs=201.7

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhh-----------hhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhc
Q 008977            2 DRKLFEAAAKGDIEPFREIARDEL-----------ESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDL   70 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~-----------~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~   70 (547)
                      ++.||.|+++|+.+.+..++..+.           ..+..+.+|+|+|       |+|+..  |+.++  +++|++    
T Consensus        16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L-------~~Aa~~--g~~~~--v~~Ll~----   80 (285)
T 3d9h_A           16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPM-------HEAAIH--GHQLS--LRNLIS----   80 (285)
T ss_dssp             --------------------------CCSEECCCCTTCSSSCCSCCHH-------HHHHHT--TCHHH--HHHHHH----
T ss_pred             HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHH-------HHHHHc--CCHHH--HHHHHH----
Confidence            468999999999888888665421           1334566777777       999999  99999  999977    


Q ss_pred             CCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHH
Q 008977           71 SPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKIL  150 (547)
Q Consensus        71 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~L  150 (547)
                      .+..++.+|..|.||||+|+..|+.++|++|++++++                ++.+|..|.||||+|+..|+.+++++|
T Consensus        81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~L  144 (285)
T 3d9h_A           81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ----------------VNGVTADWHTPLFNACVSGSWDCVNLL  144 (285)
T ss_dssp             TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------SSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCHHHHHHHH
Confidence            5677889999999999999999999999999999876                567899999999999999999999999


Q ss_pred             HhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhh
Q 008977          151 IVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVR  230 (547)
Q Consensus       151 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~  230 (547)
                      ++.++++.  .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+..   .+ .
T Consensus       145 l~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~-~  218 (285)
T 3d9h_A          145 LQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD---VN-Q  218 (285)
T ss_dssp             HHTTCCSS--CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC---TT-C
T ss_pred             HHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC---CC-C
Confidence            99999876  345699999999999999999999999999999999999999999999999999999955443   33 3


Q ss_pred             ccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCC
Q 008977          231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCD  293 (547)
Q Consensus       231 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  293 (547)
                      +..|.||||+|+..|+.+++++|+++|++++..+  ..|.||||+|+  ++.+++++|+++..
T Consensus       219 ~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d--~~g~t~l~~A~--~~~~~~~~Ll~~~~  277 (285)
T 3d9h_A          219 GKGQDSPLHAVVRTASEELACLLMDFGADTQAKN--AEGKRPVELVP--PESPLAQLFLEREG  277 (285)
T ss_dssp             CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCGGGGSC--TTSHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--CCCCCHHHHhc--CccHHHHHHHHhhc
Confidence            8899999999999999999999999998877654  46999999999  56799999999843

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.3e-36  Score=284.55  Aligned_cols=220  Identities=25%  Similarity=0.263  Sum_probs=195.1

Q ss_pred             cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977           74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA  153 (547)
Q Consensus        74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  153 (547)
                      +++..|.+|.||||+|+..|+.+++++|++++.+                ++..+..|.||||+|+..|+.+++++|+++
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   66 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN----------------IDTCSEDQRTPLMEAAENNHLEAVKYLIKA   66 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC----------------cCccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            3566888999999999999999999999998876                566788999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC-CCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhcc
Q 008977          154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC-PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDK  232 (547)
Q Consensus       154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~  232 (547)
                      |++++ ..+..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+++++|++.   +..++.+|.
T Consensus        67 g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~  142 (237)
T 3b7b_A           67 GALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK---GSDINIRDN  142 (237)
T ss_dssp             TCCCC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCT
T ss_pred             CCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCccCC
Confidence            98876 67889999999999999999999999998 78888899999999999999999999999944   344667788


Q ss_pred             CCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHH
Q 008977          233 YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMV  312 (547)
Q Consensus       233 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  312 (547)
                      .|.||||+|+..|+.+++++|+++|.+++..+  ..|.||||+|++.|+.+++++|++++++. +.+|.+|+||||+|+.
T Consensus       143 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          143 EENICLHWAAFSGCVDIAEILLAAKCDLHAVN--IHGDSPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQCASL  219 (237)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC--TTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHSCT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHhCCHhHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            99999999999999999999999998876654  45999999999999999999999998886 5568999999999998


Q ss_pred             hcCc
Q 008977          313 SLDL  316 (547)
Q Consensus       313 ~~~~  316 (547)
                      +++.
T Consensus       220 ~~~~  223 (237)
T 3b7b_A          220 NSQV  223 (237)
T ss_dssp             TCHH
T ss_pred             HHHH
Confidence            8774

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=9e-38  Score=313.99  Aligned_cols=274  Identities=20%  Similarity=0.205  Sum_probs=228.8

Q ss_pred             HHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCC
Q 008977            3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKG   82 (547)
Q Consensus         3 ~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g   82 (547)
                      ++||.|+..|+.+++++|+++|.+++..+..|.|+|       |+|+..  |+.++  +++|++.    +.  ...+.+|
T Consensus        22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~~----g~--~~~~~~g   84 (364)
T 3ljn_A           22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-------HLACKF--GCVDT--AKYLASV----GE--VHSLWHG   84 (364)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-------HHHHHH--CCHHH--HHHHHHH----CC--CCCCBTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-------HHHHHc--CCHHH--HHHHHHC----CC--CccccCC
Confidence            689999999999999999999999999999999999       999999  99999  9999773    22  2334589


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhh-----hHHHHHhcccccCCCCHhHHHHHcC--CHHHHHHHHhhCC
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVK-----SAERQMLGMTNEEQNTPLHEAVRLR--SVDVAKILIVADP  155 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~  155 (547)
                      .||||+|+..|+.++|++|++.+.....+......     .......+.++..|.||||+|+..|  +.+++++|++.|+
T Consensus        85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga  164 (364)
T 3ljn_A           85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA  164 (364)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            99999999999999999999985432111110000     0000112347889999999999999  9999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCC-----CCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhh
Q 008977          156 HVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS-----PAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVR  230 (547)
Q Consensus       156 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~-----~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~  230 (547)
                      +++ ..|..|.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|++++   ..++.+
T Consensus       165 ~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---ad~~~~  240 (364)
T 3ljn_A          165 SPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG---IDVNME  240 (364)
T ss_dssp             CTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT---CCTTCC
T ss_pred             CCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCC
Confidence            987 7889999999999999999999999999998     8889999999999999999999999999544   446778


Q ss_pred             ccCCCcHHhHHHhcCChHHHHHHhccCCCcceec----------CCCCCchHHHHHHHcCCHHHHHHHhhcCCCccc
Q 008977          231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIG----------GKDRNMTALHLAAASGHIMVVDRILSSCDGCCA  297 (547)
Q Consensus       231 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~----------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  297 (547)
                      |..|+||||+|+..|+.+++++|++++++.....          .+..+.||++.|+..|+.+.+..|++.+.+...
T Consensus       241 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~~  317 (364)
T 3ljn_A          241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVV  317 (364)
T ss_dssp             CTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999987643322          234678999999999999888888887655433

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=6e-38  Score=315.28  Aligned_cols=256  Identities=18%  Similarity=0.171  Sum_probs=211.1

Q ss_pred             hhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHH
Q 008977           25 LESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKF  104 (547)
Q Consensus        25 ~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~  104 (547)
                      ++.+..|.+|.|+|       |+|+..  |+.++  +++|++    .+..++.+|..|.||||+|+..|+.++|++|+++
T Consensus        11 ~~~~~~d~~g~t~L-------~~Aa~~--g~~~~--v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   75 (364)
T 3ljn_A           11 LNRIKSDDENMEKI-------HVAARK--GQTDE--VRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV   75 (364)
T ss_dssp             -----CCHHHHHHH-------HHHHHH--TCHHH--HHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCccccCCCCCCHH-------HHHHHc--CCHHH--HHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            44556677888888       999999  99999  999976    5778888999999999999999999999999998


Q ss_pred             hhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh----CCCCCC----------------CCCCC
Q 008977          105 AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA----DPHVPY----------------SANRN  164 (547)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~----~~~~~~----------------~~~~~  164 (547)
                      +++.                  .+..|.||||+|+..|+.+++++|++.    +.+.+.                ..+..
T Consensus        76 g~~~------------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (364)
T 3ljn_A           76 GEVH------------------SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCK  137 (364)
T ss_dssp             CCCC------------------CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEES
T ss_pred             CCCc------------------cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCC
Confidence            8742                  245799999999999999999999998    665541                16678


Q ss_pred             CCcHHHHHHHCC--CHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHccccc--chhhhhhccCCCcHHhH
Q 008977          165 NETPLYMAAANG--SVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEK--RSLTAVRDKYGWTPLHH  240 (547)
Q Consensus       165 g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~--~~~~~~~d~~g~tpLh~  240 (547)
                      |.||||+|+..|  +.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++..  ....+..|..|+||||+
T Consensus       138 g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~  217 (364)
T 3ljn_A          138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW  217 (364)
T ss_dssp             CCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH
T ss_pred             CCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH
Confidence            999999999999  99999999999999999999999999999999999999999954332  12267788999999999


Q ss_pred             HHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccc-----------cccCCCCcHHHH
Q 008977          241 AAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA-----------KVDERGWNFLHF  309 (547)
Q Consensus       241 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-----------~~d~~g~t~Lh~  309 (547)
                      |+..|+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|++++++...           ..+..|+||++.
T Consensus       218 A~~~g~~~~v~~Ll~~gad~~~~d--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  295 (364)
T 3ljn_A          218 AILINWEDVAMRFVEMGIDVNMED--NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP  295 (364)
T ss_dssp             HHTTTCHHHHHHHHTTTCCTTCCC--TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC--CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchh
Confidence            999999999999999998887654  4699999999999999999999998765311           134556666666


Q ss_pred             HHHhcC
Q 008977          310 AMVSLD  315 (547)
Q Consensus       310 A~~~~~  315 (547)
                      |+..++
T Consensus       296 aa~~~~  301 (364)
T 3ljn_A          296 AAADPS  301 (364)
T ss_dssp             SSCCHH
T ss_pred             hhhccC
Confidence            655554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.1e-37  Score=290.37  Aligned_cols=224  Identities=26%  Similarity=0.290  Sum_probs=178.3

Q ss_pred             ccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhC
Q 008977           75 LFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVAD  154 (547)
Q Consensus        75 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~  154 (547)
                      ++.+|.+|+||||+|+..|+.+++++|++.......            .++.+|..|.||||+|+..|+.+++++|++.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   69 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR------------ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG   69 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC------------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCC------------CCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            356788889999999999999999988884322111            15667888899999999999999999999888


Q ss_pred             CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCC----CCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhh
Q 008977          155 PHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP----SPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVR  230 (547)
Q Consensus       155 ~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~----~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~  230 (547)
                      ++++ ..+..|.||||+|+..|+.+++++|++.++    +++..+..|.||||+|+..++.+++++|++.+   ...+..
T Consensus        70 ~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~  145 (241)
T 1k1a_A           70 ASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG---ADIDAV  145 (241)
T ss_dssp             CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCC
T ss_pred             CCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC---CCcccc
Confidence            8876 668888899999999999999999998887    67778888899999999999999999888443   334445


Q ss_pred             c-cCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHH
Q 008977          231 D-KYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHF  309 (547)
Q Consensus       231 d-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  309 (547)
                      + ..|.||||+|+..|+.+++++|+++|.+++..+  ..|.||||+|+..|+.+++++|++++++. +.+|..|+||||+
T Consensus       146 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~  222 (241)
T 1k1a_A          146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM--YSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMV  222 (241)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBC--TTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCTTTT
T ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCCHHHHHHHHhcCCCC-CCcCCCCCCHHHH
Confidence            5 778899999999999999999999888776553  35889999999999999999999888775 5568889999999


Q ss_pred             HHHhcCcc
Q 008977          310 AMVSLDLL  317 (547)
Q Consensus       310 A~~~~~~~  317 (547)
                      |+..++.+
T Consensus       223 A~~~~~~~  230 (241)
T 1k1a_A          223 ARSRRVID  230 (241)
T ss_dssp             CSSHHHHH
T ss_pred             HHhcCcHH
Confidence            88887754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.7e-36  Score=284.77  Aligned_cols=223  Identities=21%  Similarity=0.188  Sum_probs=195.1

Q ss_pred             hcccccCCCCHhHHHHHcCCHHHHHHHHh----hCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCc
Q 008977          124 LGMTNEEQNTPLHEAVRLRSVDVAKILIV----ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGK  199 (547)
Q Consensus       124 l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~  199 (547)
                      ++.+|.+|.||||+|+..|+.+++++|++    .+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            45679999999999999999999999997    566665 7889999999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCCHHHHHHHHcccccc-hhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHH
Q 008977          200 TALHAAVYTYPTEVIKQLFLHEEKR-SLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAA  278 (547)
Q Consensus       200 t~Lh~A~~~~~~~~v~~Ll~~~~~~-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  278 (547)
                      ||||+|+..++.+++++|+..+... ...+..|..|.||||+|+..|+.+++++|+++|.+.+.... ..|.||||+|+.
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~g~t~L~~A~~  159 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI-KSGRSPLIHAVE  159 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-cCCCcHHHHHHH
Confidence            9999999999999999999544321 24667889999999999999999999999999988876542 369999999999


Q ss_pred             cCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhcc
Q 008977          279 SGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRL  355 (547)
Q Consensus       279 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~~  355 (547)
                      .|+.+++++|++.+.+. +..|..|+||||+|+..++.+      +...+++.|++++.+|.+|+||||+|+..+..
T Consensus       160 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~------~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  229 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLP------LVRTLVRSGADSSLKNCHNDTPLMVARSRRVI  229 (241)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHH------HHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHH------HHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcH
Confidence            99999999999998886 556999999999999999864      44567788999999999999999999988654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.9e-37  Score=293.61  Aligned_cols=224  Identities=21%  Similarity=0.285  Sum_probs=169.8

Q ss_pred             ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCH-HHHHHHHhhCC
Q 008977           77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSV-DVAKILIVADP  155 (547)
Q Consensus        77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~  155 (547)
                      ++|.++.+||+.||..|+.++|++|++.+++...+        ....++..+..|.||||.|+..++. .++++|++.|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~--------~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga   77 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED--------AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL   77 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------------CCC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc--------ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC
Confidence            46777889999999999999999999987653221        1223566788999999999988875 48899999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCC
Q 008977          156 HVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGW  235 (547)
Q Consensus       156 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~  235 (547)
                      +++ ..|.+|.||||+|+..|+.+++++|++.+++++..+..|.||+|.|+..++.++++.|++.   +..++.+|..|+
T Consensus        78 dvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~---g~~~n~~d~~g~  153 (269)
T 4b93_B           78 GVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS---NAKPNKKDLSGN  153 (269)
T ss_dssp             CTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCTTCC
T ss_pred             CCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC---CCCCCCCCCCCC
Confidence            987 7899999999999999999999999999999999999999999999999999999999944   344677899999


Q ss_pred             cHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcC
Q 008977          236 TPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLD  315 (547)
Q Consensus       236 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  315 (547)
                      ||||+|+..|+.+++++|+++|++++...  ..|.||||+|+..|+.++|++|++++++. +.+|.+|+||||+|+++++
T Consensus       154 TpL~~A~~~g~~~~v~~Ll~~gadvn~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          154 TPLIYACSGGHHELVALLLQHGASINASN--NKGNTALHEAVIEKHVFVVELLLLHGASV-QVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHTTCCTTCBC--TTSCBHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCSGGGSCTTCH
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCCCccc--cCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHhCCc
Confidence            99999999999999999999999887654  46999999999999999999999999886 6679999999999987765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7e-36  Score=281.29  Aligned_cols=231  Identities=19%  Similarity=0.208  Sum_probs=207.6

Q ss_pred             hhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHH
Q 008977           25 LESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKF  104 (547)
Q Consensus        25 ~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~  104 (547)
                      ++++.++.+|.|+|       |+|+..  |+.++  +++|++    .+..++..+..|.||||+|+..|+.+++++|+++
T Consensus         2 ~~~~~~~~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   66 (237)
T 3b7b_A            2 MNFKMEHQNKRSPL-------HAAAEA--GHVDI--CHMLVQ----AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA   66 (237)
T ss_dssp             CCCCCSSCCSCCHH-------HHHHHH--TCHHH--HHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCcccccCCCCCHH-------HHHHHc--CcHHH--HHHHHH----cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            45667788899999       999999  99999  999977    5777888999999999999999999999999998


Q ss_pred             hhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHH
Q 008977          105 AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKI  184 (547)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L  184 (547)
                      +.+                ++.++..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|
T Consensus        67 g~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  130 (237)
T 3b7b_A           67 GAL----------------VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL  130 (237)
T ss_dssp             TCC----------------CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCC----------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            876                5567889999999999999999999999998544447889999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceec
Q 008977          185 LQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIG  264 (547)
Q Consensus       185 l~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~  264 (547)
                      +++|++++..+..|.||||+|+..++.+++++|++++   ..++.+|..|.||||+|+..|+.+++++|+++|++.+..+
T Consensus       131 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d  207 (237)
T 3b7b_A          131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK---CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN  207 (237)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             HHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccC
Confidence            9999999999999999999999999999999999544   4466779999999999999999999999999999887654


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHhhc
Q 008977          265 GKDRNMTALHLAAASGHIMVVDRILSS  291 (547)
Q Consensus       265 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~  291 (547)
                        ..|.||||+|+.+|+.+.+..+++.
T Consensus       208 --~~g~t~l~~A~~~~~~~~~~~l~~~  232 (237)
T 3b7b_A          208 --KEGETPLQCASLNSQVWSALQMSKA  232 (237)
T ss_dssp             --TTSCCHHHHSCTTCHHHHHHHHHHH
T ss_pred             --CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence              4699999999999999777666653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.3e-36  Score=280.94  Aligned_cols=215  Identities=22%  Similarity=0.199  Sum_probs=152.9

Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC
Q 008977           80 AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY  159 (547)
Q Consensus        80 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~  159 (547)
                      ..+.||||.|++.|+.+.++.|++.+...               ++.++..|.||||+|+..|+.+++++|++.|++++ 
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-   67 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSL---------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-   67 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGG---------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhh---------------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-
Confidence            45667777777777777777777654321               44556777777777777777777777777777665 


Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHh
Q 008977          160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH  239 (547)
Q Consensus       160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh  239 (547)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++   +...+.+|..|.||||
T Consensus        68 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~  144 (231)
T 3aji_A           68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG---GANPDAKDHYDATAMH  144 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCcHHH
Confidence            5667777777777777777777777777777777777777777777777777777777733   2334556677777777


Q ss_pred             HHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCc
Q 008977          240 HAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDL  316 (547)
Q Consensus       240 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  316 (547)
                      +|+..|+.+++++|+++|.+++..+  ..|.||||+|+..|+.+++++|++++++. +.+|..|+||||+|+..++.
T Consensus       145 ~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~  218 (231)
T 3aji_A          145 RAAAKGNLKMVHILLFYKASTNIQD--TEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGGLGL  218 (231)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCC--TTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHSCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCCccccC--CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhhHHH
Confidence            7777777777777777776665443  34777777777777777777777777665 45577777777777666553

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.7e-35  Score=277.56  Aligned_cols=215  Identities=24%  Similarity=0.246  Sum_probs=193.8

Q ss_pred             ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977          128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY  207 (547)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~  207 (547)
                      +..+++|||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence            45688999999999999999999999888777889999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHH
Q 008977          208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDR  287 (547)
Q Consensus       208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  287 (547)
                      .++.+++++|+++   +...+.+|..|.||||+|+..|+.+++++|+++|.+++...  ..|.||||+|+..|+.+++++
T Consensus        83 ~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~  157 (231)
T 3aji_A           83 AGXDEIVKALLVK---GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD--HYDATAMHRAAAKGNLKMVHI  157 (231)
T ss_dssp             HTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHH
T ss_pred             cCHHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCcHHHHHHHcCCHHHHHH
Confidence            9999999999944   34466788999999999999999999999999998876543  469999999999999999999


Q ss_pred             HhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhc
Q 008977          288 ILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR  354 (547)
Q Consensus       288 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~  354 (547)
                      |++.+.+. +.+|..|+||||+|+..++.+      +...+++.|++++.+|.+|+||||+|++.+.
T Consensus       158 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~------~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          158 LLFYKAST-NIQDTEGNTPLHLACDEERVE------EAKFLVTQGASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             HHHTTCCS-CCCCTTSCCHHHHHHHTTCHH------HHHHHHHTTCCSCCCCTTSCCHHHHSCHHHH
T ss_pred             HHhcCCCc-cccCCCCCCHHHHHHHCCCHH------HHHHHHHCCCCCCCCCCCCCCHHHHHHhhHH
Confidence            99998876 556999999999999999853      4456678899999999999999999987654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.9e-35  Score=274.44  Aligned_cols=211  Identities=23%  Similarity=0.264  Sum_probs=183.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhC--CCCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVAD--PHVPY  159 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~--~~~~~  159 (547)
                      |+||||+|++.|+.++|++|++.+++.               .+.++..|.||||+|+..|+.+++++|++.+  ++...
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~   66 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL---------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD   66 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc---------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc
Confidence            689999999999999999999987652               3446889999999999999999999999998  56554


Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHHhC--CCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          160 SANRNNETPLYMAAANGSVEIVAKILQKC--PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~--~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                      ..+..|.||||+|+..|+.+++++|+++|  ++++..+..|.||||+|+..++.+++++|+++   +...+.+|..|+||
T Consensus        67 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~  143 (228)
T 2dzn_A           67 YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN---GASVRIKDKFNQIP  143 (228)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc---CCCccccCCCCCCH
Confidence            47889999999999999999999999998  88888899999999999999999999999944   44466778899999


Q ss_pred             HhHHHhcCChHHHHHHhccC-CCcceecCCCCCchHHHHHHHcCCHHHHHHHh-hcCCCccccccCCCCcHHHHHHHh
Q 008977          238 LHHAAYSGRELTSKLLLDHD-KSAAFIGGKDRNMTALHLAAASGHIMVVDRIL-SSCDGCCAKVDERGWNFLHFAMVS  313 (547)
Q Consensus       238 Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll-~~~~~~~~~~d~~g~t~Lh~A~~~  313 (547)
                      ||+|+..|+.+++++|+++| .+.+..  +..|.||||+|+..|+.+++++|+ +.+.+. +.+|.+|+||||+|+..
T Consensus       144 L~~A~~~~~~~~v~~Ll~~g~~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~-~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          144 LHRAASVGSLKLIELLCGLGKSAVNWQ--DKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-CCBCTTSCBGGGGCSST
T ss_pred             HHHHHHcCCHHHHHHHHhcCcccccCc--CCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCcHHHHHHHH
Confidence            99999999999999999998 665544  346999999999999999999999 777765 56799999999999654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4e-34  Score=266.62  Aligned_cols=216  Identities=22%  Similarity=0.191  Sum_probs=191.0

Q ss_pred             CceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCC
Q 008977           54 GEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNT  133 (547)
Q Consensus        54 g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t  133 (547)
                      |+.++  +++|++   .+.......|..|.||||+|+..|+.+++++|++++.+                ++.++..|.|
T Consensus         2 g~~~~--i~~Ll~---~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t   60 (223)
T 2f8y_A            2 DAPAV--ISDFIY---QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD----------------ANIQDNMGRT   60 (223)
T ss_dssp             ---CC--EETTEE---TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCC
T ss_pred             CcHHH--HHHHHH---cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC----------------CCCcCCCCCC
Confidence            67778  888844   44444455689999999999999999999999999876                5667899999


Q ss_pred             HhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHH
Q 008977          134 PLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEV  213 (547)
Q Consensus       134 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  213 (547)
                      |||+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++
T Consensus        61 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  140 (223)
T 2f8y_A           61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA  140 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHH
Confidence            99999999999999999999885555789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCC
Q 008977          214 IKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCD  293 (547)
Q Consensus       214 v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  293 (547)
                      +++|+++   +...+.+|..|.||||+|+..|+.+++++|+++|++.+..+  ..|.||||+|++.|+.+++++|++++.
T Consensus       141 v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          141 AVVLLKN---GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD--HMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HHHHHHT---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHc---CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc--ccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            9999954   44567789999999999999999999999999999887654  459999999999999999999999887


Q ss_pred             Cc
Q 008977          294 GC  295 (547)
Q Consensus       294 ~~  295 (547)
                      ..
T Consensus       216 ~~  217 (223)
T 2f8y_A          216 VR  217 (223)
T ss_dssp             SS
T ss_pred             Cc
Confidence            53

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-35  Score=286.98  Aligned_cols=239  Identities=20%  Similarity=0.183  Sum_probs=201.1

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977           78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV  157 (547)
Q Consensus        78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  157 (547)
                      .+..|.||||.||..|+.++|++|++.+.+                ++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~   99 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGAD----------------INYANVDGLTALHQACIDDNVDMVKFLVENGANI   99 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCC----------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            455788999999999999999999999876                5678999999999999999999999999999998


Q ss_pred             CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                      + ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++.++  ...+...+..+..+.++
T Consensus       100 ~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll--~~~~~~~~~~~~~~~~~  176 (299)
T 1s70_B          100 N-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV--NRQGVDIEAARKEEERI  176 (299)
T ss_dssp             T-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHH--HHHTCCHHHHHHHHHHH
T ss_pred             C-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHH--hhcCCCchhhhhhhhhH
Confidence            7 77899999999999999999999999999999999999999999999999999999988  33333344444444444


Q ss_pred             HhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcc
Q 008977          238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLL  317 (547)
Q Consensus       238 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  317 (547)
                      ++.        .++.++..+...... .+..|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+..++.+
T Consensus       177 ~~~--------~~~~~l~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~  246 (299)
T 1s70_B          177 MLR--------DARQWLNSGHINDVR-HAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEE  246 (299)
T ss_dssp             HHH--------HHHHHHHHTCCCCCC-CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHH--------HHHHHHhccCcchhh-hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHH
Confidence            433        344555555444333 2347999999999999999999999998876 556999999999999999864


Q ss_pred             cccceeeecccccccccccccccCCCchhHHHHH
Q 008977          318 QSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAA  351 (547)
Q Consensus       318 ~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~  351 (547)
                            +...+++.|++++.+|..|+||||+|++
T Consensus       247 ------~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          247 ------ACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             ------HHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             ------HHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence                  4456778899999999999999999864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=271.22  Aligned_cols=221  Identities=22%  Similarity=0.238  Sum_probs=200.7

Q ss_pred             cccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCC
Q 008977           76 FQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADP  155 (547)
Q Consensus        76 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~  155 (547)
                      +..|..|.||||.|+..|+.+++++|++.+.+                ++.++..|.||||+|+..|+.+++++|++.++
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~   66 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD----------------VRQPDKENVTLLHWAAINNRIDLVKYYISKGA   66 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCC----------------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            45688899999999999999999999998876                56678999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCC
Q 008977          156 HVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGW  235 (547)
Q Consensus       156 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~  235 (547)
                      +.....+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++   +...+.++..|.
T Consensus        67 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~g~  143 (240)
T 3eu9_A           67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK---GQDVDMMDQNGM  143 (240)
T ss_dssp             CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSC
T ss_pred             cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc---CCCccccCCCCC
Confidence            98877777899999999999999999999999999999999999999999999999999999954   344667899999


Q ss_pred             cHHhHHHhcCC-hHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhc
Q 008977          236 TPLHHAAYSGR-ELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSL  314 (547)
Q Consensus       236 tpLh~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  314 (547)
                      ||||+|+..++ .+++++|++.+.+.+..... .|.||||+|+..|+.+++++|++++++. +.+|..|+||||+|++.+
T Consensus       144 t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY-HKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             CHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCTTSCBHHHHHHHTT
T ss_pred             cHHHHHHHhCChHHHHHHHHhcCCCcchhhcc-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcC
Confidence            99999997766 89999999999988766542 6999999999999999999999999876 567999999999999999


Q ss_pred             Ccc
Q 008977          315 DLL  317 (547)
Q Consensus       315 ~~~  317 (547)
                      +.+
T Consensus       222 ~~~  224 (240)
T 3eu9_A          222 NVW  224 (240)
T ss_dssp             CHH
T ss_pred             cHH
Confidence            864

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-35  Score=281.07  Aligned_cols=209  Identities=29%  Similarity=0.325  Sum_probs=148.0

Q ss_pred             HHHHHHHHcCCchHHHHHhhhhhhh--------hhcccCCCceeccCCccceeEeeecCCcee-cchhhHHHHHhhcCCc
Q 008977            3 RKLFEAAAKGDIEPFREIARDELES--------IVTDLMNNTVLYGNITASHLTLQTEEGEIV-SVSTKFVEHILDLSPS   73 (547)
Q Consensus         3 ~~L~~A~~~g~~~~l~~ll~~~~~~--------~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~-~~~~~~L~~~~~~~~~   73 (547)
                      ++|+.|+++|+.++++.|++.+.+.        +..+..|.|+|       |.|+..  ++.+ +  ++.|++    .+.
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L-------~~a~~~--~~~~~~--v~~Ll~----~Ga   77 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPL-------CQCPKC--APAQKR--LAKVPA----SGL   77 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC-------------------------------------------------------CCC
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHH-------HHHHHh--CCHHHH--HHHHHH----CCC
Confidence            5799999999999999999986542        23344455555       888877  5543 4  555544    677


Q ss_pred             cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977           74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA  153 (547)
Q Consensus        74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  153 (547)
                      +++.+|.+|+||||+|+..|+.++|++|++.+++                ++.++..|.||+|.|+..++.+++++|++.
T Consensus        78 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~----------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  141 (269)
T 4b93_B           78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN----------------AGARNADQAVPLHLACQQGHFQVVKCLLDS  141 (269)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC----------------cCccCCCCCCccccccccChHHHHHHHHHC
Confidence            7888888888888888888888888888888766                456677888888888888888888888888


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccC
Q 008977          154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKY  233 (547)
Q Consensus       154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~  233 (547)
                      |++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++   ..++.+|.+
T Consensus       142 g~~~n-~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G---ad~~~~d~~  217 (269)
T 4b93_B          142 NAKPN-KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG---ASVQVLNKR  217 (269)
T ss_dssp             TCCSC-CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT---CCSCCCCTT
T ss_pred             CCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCC
Confidence            88876 67888888888888888888888888888888888888888888888888888888888443   345667888


Q ss_pred             CCcHHhHHHhcCC
Q 008977          234 GWTPLHHAAYSGR  246 (547)
Q Consensus       234 g~tpLh~A~~~g~  246 (547)
                      |+||||+|+++++
T Consensus       218 G~TpL~~A~~~~~  230 (269)
T 4b93_B          218 QRTAVDCAEQNSK  230 (269)
T ss_dssp             SCCSGGGSCTTCH
T ss_pred             CCCHHHHHHhCCc
Confidence            8888888877664

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.6e-34  Score=270.32  Aligned_cols=213  Identities=21%  Similarity=0.188  Sum_probs=188.2

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC--CCCCC-CCCCCchHHHHHHh
Q 008977          131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC--PSPAH-EGPDGKTALHAAVY  207 (547)
Q Consensus       131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~--~~~~~-~~~~g~t~Lh~A~~  207 (547)
                      |+||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            7899999999999999999999999888778999999999999999999999999999  44444 77899999999999


Q ss_pred             cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHH
Q 008977          208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDR  287 (547)
Q Consensus       208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  287 (547)
                      .++.+++++|++++. ....+..+..|.||||+|+..|+.+++++|+++|.+.+..+  ..|.||||+|+..|+.+++++
T Consensus        82 ~~~~~~~~~Ll~~g~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPL-KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD--KFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             HCCHHHHHHHHSSSS-CCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC--TTSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHhCCC-CcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccC--CCCCCHHHHHHHcCCHHHHHH
Confidence            999999999995442 14467778999999999999999999999999998876554  469999999999999999999


Q ss_pred             HhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccc-cccccccccccCCCchhHHHHHh
Q 008977          288 ILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTV-RNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       288 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~-~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                      |++.++...+.+|..|+||||+|+..++.+      +...++ +.|++++.+|.+|+||||+|.+.
T Consensus       159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~------~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGD------AAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHH------HHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             HHhcCcccccCcCCCCCCHHHHHHHcCCHH------HHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            999996666778999999999999999864      334455 78999999999999999998643

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.2e-34  Score=280.24  Aligned_cols=255  Identities=20%  Similarity=0.135  Sum_probs=187.0

Q ss_pred             hhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhc
Q 008977           28 IVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKK  107 (547)
Q Consensus        28 ~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~  107 (547)
                      +..+.+|+|||       |+|+..  |+.++  +++|++ ....+..++.+|..|.||||+|+..|+.++|++|+++|++
T Consensus         3 ~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~-~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~   70 (282)
T 1oy3_D            3 GYVTEDGDTAL-------HLAVIH--QHEPF--LDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG   70 (282)
T ss_dssp             CCCCTTCCCHH-------HHHHHT--TCHHH--HHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CccCCCCCcHH-------HHHHHc--CCHHH--HHHHHh-cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            35567888888       999999  99999  999987 2334445888999999999999999999999999999887


Q ss_pred             CCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC------------CCCCCCcHHHHHHHC
Q 008977          108 QPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS------------ANRNNETPLYMAAAN  175 (547)
Q Consensus       108 ~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~------------~~~~g~tpL~~A~~~  175 (547)
                                      ++.++..|.||||+|+..|+.+++++|+++++.....            ....+.++++.++..
T Consensus        71 ----------------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (282)
T 1oy3_D           71 ----------------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP  134 (282)
T ss_dssp             ----------------SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------
T ss_pred             ----------------CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccc
Confidence                            5677999999999999999999999999988764311            123456777777665


Q ss_pred             CCH-HHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhcc-CCCcHHhHHHhcCChHHHHHH
Q 008977          176 GSV-EIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDK-YGWTPLHHAAYSGRELTSKLL  253 (547)
Q Consensus       176 g~~-~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~L  253 (547)
                      +.. .....+...+.+++..+..|.||||+|+..|+.+++++|++++   ..++.++. .|+||||+|+..|+.+++++|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  211 (282)
T 1oy3_D          135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG---ADLNKPEPTCGRTPLHLAVEAQAASVLELL  211 (282)
T ss_dssp             ---------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT---CCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCcCHHHHHHHcCCHHHHHHH
Confidence            543 3444555667788889999999999999999999999999443   34555554 599999999999999999999


Q ss_pred             hccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCc
Q 008977          254 LDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDL  316 (547)
Q Consensus       254 l~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  316 (547)
                      +++|++++..+  ..|.||||+|+..|+.+++++|++++++. +.+|.+|+|||++|....+.
T Consensus       212 l~~gad~~~~d--~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          212 LKAGADPTARM--YGGRTPLGSALLRPNPILARLLRAHGAPE-PEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HHTTCCTTCCC--TTSCCHHHHHHTSSCHHHHHHHHHTTCCC-CCCC----------------
T ss_pred             HHcCCCCcccc--cCCCCHHHHHHHcCCcHHHHHHHHcCCCc-CcCCCcccccccccCCcccc
Confidence            99999887654  46999999999999999999999999996 56699999999999877653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1e-34  Score=280.99  Aligned_cols=211  Identities=16%  Similarity=0.151  Sum_probs=97.0

Q ss_pred             cCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHH
Q 008977           11 KGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAA   90 (547)
Q Consensus        11 ~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa   90 (547)
                      ..+.+.++.++.++ +++..+.+|.|||       |+|+..  |+.++  +++|++    .+..++..  +|.||||+|+
T Consensus         9 ~~~~~~v~~lL~~~-~~~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~--~g~t~L~~A~   70 (285)
T 3kea_A            9 TWKSKQLKSFLSSK-DTFKADVHGHSAS-------YYAIAD--NNVRL--VCTLLN----AGALKNLL--ENEFPLHQAA   70 (285)
T ss_dssp             GCCHHHHHHHHHST-TTTCCCTTSCCHH-------HHHHHT--TCHHH--HHHHHH----TTGGGSCC--TTCCHHHHHT
T ss_pred             hcCHHHHHHHHHhC-CCCccCCCCCCHH-------HHHHHc--CCHHH--HHHHHh----CCCCCCCC--CCCCHHHHHH
Confidence            33444444433332 3344444444444       555555  55544  444433    23333333  2445555555


Q ss_pred             HcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCC-CcHH
Q 008977           91 KKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNN-ETPL  169 (547)
Q Consensus        91 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL  169 (547)
                      ..|+.++|++|++++++                ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..| .|||
T Consensus        71 ~~g~~~~v~~Ll~~ga~----------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L  133 (285)
T 3kea_A           71 TLEDTKIVKILLFSGLD----------------DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSF  133 (285)
T ss_dssp             TSSSCHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHH
T ss_pred             HcCCHHHHHHHHHCCCC----------------CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHH
Confidence            55555555555554443                23344445555555555555555555555544443 334444 4555


Q ss_pred             HHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH-HhHHHhcCChH
Q 008977          170 YMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP-LHHAAYSGREL  248 (547)
Q Consensus       170 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp-Lh~A~~~g~~~  248 (547)
                      |+|+..|+.+++++|+++|++.... ..|.||||+|+..|+.+++++|+++   +..++.+|..|+|| ||+|+..|+.+
T Consensus       134 ~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~~L~~A~~~~~~~  209 (285)
T 3kea_A          134 YHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDY---MTSTNTNNSLLFIPDIKLAIDNKDIE  209 (285)
T ss_dssp             HHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHH---HHHTCTTCCCBCCTTHHHHHHHTCHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHc---CCCCCcccCCCCChHHHHHHHcCCHH
Confidence            5555555555555555554443111 1444555555555555555555422   22334444445444 55555555555


Q ss_pred             HHHHHhccCCCc
Q 008977          249 TSKLLLDHDKSA  260 (547)
Q Consensus       249 ~v~~Ll~~~~~~  260 (547)
                      ++++|+++|+++
T Consensus       210 ~v~~Ll~~gad~  221 (285)
T 3kea_A          210 MLQALFKYDINI  221 (285)
T ss_dssp             HHHHHTTSCBCS
T ss_pred             HHHHHHHcCCCC
Confidence            555555554443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=266.04  Aligned_cols=230  Identities=20%  Similarity=0.186  Sum_probs=200.8

Q ss_pred             cccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCC
Q 008977           30 TDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQP  109 (547)
Q Consensus        30 ~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~  109 (547)
                      .+..|.++|       |.|+..  |+.++  +++|++    .+..++..+..|.||||+|+..|+.+++++|++++.+..
T Consensus         5 ~d~~~~~~l-------~~A~~~--g~~~~--~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~   69 (240)
T 3eu9_A            5 IDDYSTWDI-------VKATQY--GIYER--CRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD   69 (240)
T ss_dssp             CSCGGGCCH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cccccchHH-------HHHHHc--CChHH--HHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch
Confidence            344667777       999999  99999  999977    567788899999999999999999999999999887632


Q ss_pred             chhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCC
Q 008977          110 RDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP  189 (547)
Q Consensus       110 ~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  189 (547)
                                     ...+..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|+++|+
T Consensus        70 ---------------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  133 (240)
T 3eu9_A           70 ---------------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ  133 (240)
T ss_dssp             ---------------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ---------------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCC
Confidence                           2345669999999999999999999999999887 678999999999999999999999999999


Q ss_pred             CCCCCCCCCchHHHHHHhcCC-HHHHHHHHcccccchhhhhhcc-CCCcHHhHHHhcCChHHHHHHhccCCCcceecCCC
Q 008977          190 SPAHEGPDGKTALHAAVYTYP-TEVIKQLFLHEEKRSLTAVRDK-YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKD  267 (547)
Q Consensus       190 ~~~~~~~~g~t~Lh~A~~~~~-~~~v~~Ll~~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  267 (547)
                      +++..+..|.||||+|+..++ .+++++|+..+   ...+..+. .|.||||+|+..|+.+++++|+++|++++..+  .
T Consensus       134 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~  208 (240)
T 3eu9_A          134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN---VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN--I  208 (240)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT---CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBC--T
T ss_pred             CccccCCCCCcHHHHHHHhCChHHHHHHHHhcC---CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC--C
Confidence            999999999999999997666 78889888433   33555565 89999999999999999999999998887654  4


Q ss_pred             CCchHHHHHHHcCCHHHHHHHhhcCCCc
Q 008977          268 RNMTALHLAAASGHIMVVDRILSSCDGC  295 (547)
Q Consensus       268 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  295 (547)
                      .|.||||+|++.|+.+++++|++.+++.
T Consensus       209 ~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          209 KGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            6999999999999999999999987653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-35  Score=290.39  Aligned_cols=269  Identities=13%  Similarity=0.075  Sum_probs=200.7

Q ss_pred             CceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhh-hhhhHHHHHhcccccCCC
Q 008977           54 GEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQR-GVKSAERQMLGMTNEEQN  132 (547)
Q Consensus        54 g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~  132 (547)
                      .+.++  +++|++    .+..++..+..|.|+++     |+.++|+.|+++|.++...... ........--........
T Consensus        30 ~~~dl--v~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~   98 (327)
T 1sw6_A           30 FTHDL--TSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQ   98 (327)
T ss_dssp             CCTTC--CCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------
T ss_pred             hcCch--HHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCcc
Confidence            34566  788855    78899999999999988     9999999999999764221000 000000000000111223


Q ss_pred             CHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC--
Q 008977          133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP--  210 (547)
Q Consensus       133 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~--  210 (547)
                      +.+|.|+..+..+++++|++.|.+++...|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+  
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence            446889999999999999999999985489999999999999999999999999999999999999999999999988  


Q ss_pred             -HHHHHHHHcccccchhhhhhccCCCcHHhHHHh----cCChHHHHHHhcc--------------------CCCcceecC
Q 008977          211 -TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY----SGRELTSKLLLDH--------------------DKSAAFIGG  265 (547)
Q Consensus       211 -~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~--------------------~~~~~~~~~  265 (547)
                       .++++.|++  ......+.+|..|+||||+|+.    .|+.++++.|++.                    |.+++.  .
T Consensus       179 ~~~~~~~ll~--~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~--~  254 (327)
T 1sw6_A          179 DSGTFEALLD--YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND--K  254 (327)
T ss_dssp             HTTCHHHHHH--HHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred             cHHHHHHHHH--hhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc--c
Confidence             577777773  3334577889999999999999    8999999999987                    444443  3


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCch
Q 008977          266 KDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTP  345 (547)
Q Consensus       266 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~  345 (547)
                      +..|.||||.|+.      +++|++.+   .+.+|.+|+||||+|++.++.+      +...|++.|++++.+|.+|+||
T Consensus       255 ~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~------~v~~Ll~~Gad~~~~d~~G~Tp  319 (327)
T 1sw6_A          255 NGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNIS------IVDALLDYGADPFIANKSGLRP  319 (327)
T ss_dssp             -----CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHH------HHHHHHHTTCCTTCCCTTSCCG
T ss_pred             cccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHH------HHHHHHHcCCCCcccCCCCCCH
Confidence            4569999999986      88999883   4667999999999999999863      4456778899999999999999


Q ss_pred             hHHHHHh
Q 008977          346 LHVVAAV  352 (547)
Q Consensus       346 Lh~A~~~  352 (547)
                      ||+|++.
T Consensus       320 L~~A~~~  326 (327)
T 1sw6_A          320 VDFGAGL  326 (327)
T ss_dssp             GGGTCC-
T ss_pred             HHHHHhc
Confidence            9999865

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=8.4e-35  Score=283.98  Aligned_cols=269  Identities=19%  Similarity=0.193  Sum_probs=212.6

Q ss_pred             HHHHcCCchHHHHHhhhhhhhhhcc--cCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCCh
Q 008977            7 EAAAKGDIEPFREIARDELESIVTD--LMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDS   84 (547)
Q Consensus         7 ~A~~~g~~~~l~~ll~~~~~~~~~~--~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t   84 (547)
                      .+++.+..+.++.++....+.....  ......-+.+.||||.|+..  |+.++  +++|++    .+..++..|..|.|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~g~t   75 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSS--GDTEE--VLRLLE----RGADINYANVDGLT   75 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHH--TCHHH--HHHHHH----HCCCTTCBCTTCCB
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHc--CCHHH--HHHHHH----cCCCCcccCCCCCC
Confidence            4778888888988888754332111  11111112333444999999  99999  999977    46778889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCC
Q 008977           85 PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRN  164 (547)
Q Consensus        85 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  164 (547)
                      |||+|+..|+.++|++|++++++                ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..
T Consensus        76 ~L~~A~~~g~~~~v~~Ll~~ga~----------------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~  138 (299)
T 1s70_B           76 ALHQACIDDNVDMVKFLVENGAN----------------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSE  138 (299)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC----------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCC
Confidence            99999999999999999999877                56779999999999999999999999999999987 77999


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHh-CCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977          165 NETPLYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY  243 (547)
Q Consensus       165 g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~  243 (547)
                      |.||||+|+..|+.++++.++.. +.+++..+..+.++++        ..+..++  ..........+..|.||||+|+.
T Consensus       139 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l--~~~~~~~~~~~~~g~t~L~~A~~  208 (299)
T 1s70_B          139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWL--NSGHINDVRHAKSGGTALHVAAA  208 (299)
T ss_dssp             SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHH--HHTCCCCCCCTTTCCCHHHHHHH
T ss_pred             CCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHH--hccCcchhhhcCCCCCHHHHHHH
Confidence            99999999999999999988865 4443332222233332        2233444  22233334467889999999999


Q ss_pred             cCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHh
Q 008977          244 SGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVS  313 (547)
Q Consensus       244 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  313 (547)
                      .|+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|++++++. +.+|..|+||||+|++.
T Consensus       209 ~g~~~~v~~Ll~~g~d~~~~d--~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          209 KGYTEVLKLLIQARYDVNIKD--YDGWTPLHAAAHWGKEEACRILVENLCDM-EAVNKVGQTAFDVADED  275 (299)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCC--TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTTTSCCSG
T ss_pred             CCcHHHHHHHHHcCCCCCCcC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHH
Confidence            999999999999998887654  46999999999999999999999999886 56699999999999653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.7e-33  Score=262.36  Aligned_cols=216  Identities=19%  Similarity=0.161  Sum_probs=194.1

Q ss_pred             cCCchHHHHHhhhhhhhhhc-ccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHH
Q 008977           11 KGDIEPFREIARDELESIVT-DLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLA   89 (547)
Q Consensus        11 ~g~~~~l~~ll~~~~~~~~~-~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~A   89 (547)
                      .|+.+++++|+++|.+++.. +.+|.|+|       |+|+..  |+.++  +++|++    .+..++..|..|.||||+|
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~g~t~L~~A   65 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETAL-------HLAARY--SRSDA--AKRLLE----ASADANIQDNMGRTPLHAA   65 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchH-------HHHHHc--CCHHH--HHHHHH----cCCCCCCcCCCCCCHHHHH
Confidence            37889999999999888764 67899999       999999  99999  999977    5777888999999999999


Q ss_pred             HHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHH
Q 008977           90 AKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPL  169 (547)
Q Consensus        90 a~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  169 (547)
                      +..|+.+++++|+++++..               ++..+..|.||||+|+..|+.+++++|++.+++++ ..+..|.|||
T Consensus        66 ~~~~~~~~v~~Ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L  129 (223)
T 2f8y_A           66 VSADAQGVFQILIRNRATD---------------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSAL  129 (223)
T ss_dssp             HHTTCHHHHHHHHHBTTSC---------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHH
T ss_pred             HHcCCHHHHHHHHHcCCCC---------------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHH
Confidence            9999999999999987632               55678999999999999999999999999999987 7789999999


Q ss_pred             HHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHH
Q 008977          170 YMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELT  249 (547)
Q Consensus       170 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~  249 (547)
                      |+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++++.   ..+.+|..|.||||+|+..++.++
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~A~~~~~~~i  206 (223)
T 2f8y_A          130 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA---NRDITDHMDRLPRDIAQERMHHDI  206 (223)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC---CCccccccCCCHHHHHHHhcchHH
Confidence            99999999999999999999999999999999999999999999999995543   456779999999999999999999


Q ss_pred             HHHHhccCCCc
Q 008977          250 SKLLLDHDKSA  260 (547)
Q Consensus       250 v~~Ll~~~~~~  260 (547)
                      +++|+++|...
T Consensus       207 ~~~L~~~g~~~  217 (223)
T 2f8y_A          207 VRLLDEYNLVR  217 (223)
T ss_dssp             HHHHHHTTCSS
T ss_pred             HHHHHHcCCCc
Confidence            99999998753

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.2e-33  Score=273.49  Aligned_cols=226  Identities=19%  Similarity=0.191  Sum_probs=191.3

Q ss_pred             cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977           74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA  153 (547)
Q Consensus        74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  153 (547)
                      .++.+|..|.||||+|+..|+.++|++|++++++                ++.+  +|.||||+|+..|+.+++++|+++
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~   84 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL----------------KNLL--ENEFPLHQAATLEDTKIVKILLFS   84 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG----------------GSCC--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----------------CCCC--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence            4788999999999999999999999999999876                3333  489999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCC-chHHHHHHhcCCHHHHHHHHcccccchhhhhhcc
Q 008977          154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG-KTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDK  232 (547)
Q Consensus       154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g-~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~  232 (547)
                      |++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..++.+++++|++++...     .+.
T Consensus        85 ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~  158 (285)
T 3kea_A           85 GLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-----FDL  158 (285)
T ss_dssp             TCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT-----CCC
T ss_pred             CCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc-----ccc
Confidence            99987 688899999999999999999999999999999999999 89999999999999999999554322     233


Q ss_pred             -CCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchH-HHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHH
Q 008977          233 -YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTA-LHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFA  310 (547)
Q Consensus       233 -~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tp-L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  310 (547)
                       .|.||||+|+..|+.+++++|+++|++++..  +..|.|| ||+|+..|+.+++++|++++++... .|       +.|
T Consensus       159 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~--~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~-~~-------~~a  228 (285)
T 3kea_A          159 AILLSCIHITIKNGHVDMMILLLDYMTSTNTN--NSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS-AN-------LEN  228 (285)
T ss_dssp             STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT--CCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT-TT-------GGG
T ss_pred             cCCccHHHHHHHcChHHHHHHHHHcCCCCCcc--cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC-CC-------hhh
Confidence             8999999999999999999999999877654  3468897 9999999999999999999988633 34       244


Q ss_pred             HHhcCcccccceeeecccccccccccccc
Q 008977          311 MVSLDLLQSSGLVIKHPTVRNSRLLIAED  339 (547)
Q Consensus       311 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~d  339 (547)
                      +..++.      .+...+++.|.+++..+
T Consensus       229 ~~~~~~------~iv~~Ll~~g~~~~~~~  251 (285)
T 3kea_A          229 VLLDDA------EIAKMIIEKHVEYKSDS  251 (285)
T ss_dssp             GTTTCH------HHHHHHHHHHHHHTTCT
T ss_pred             hhcCCH------HHHHHHHHcCCCCCCcc
Confidence            555554      24455666676655443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.6e-32  Score=257.50  Aligned_cols=196  Identities=24%  Similarity=0.319  Sum_probs=169.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHH-hhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC-
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP-  158 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-  158 (547)
                      .|+||||+|++.|+.++|++|++. +.+                ++.+|..|.||||+|+..|+.+++++|++.+++.. 
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~   65 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE----------------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF   65 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC----------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc
Confidence            589999999999999999999997 554                66789999999999999999999999999998763 


Q ss_pred             ---CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCC-------------CCchHHHHHHhcCCHHHHHHHHcccc
Q 008977          159 ---YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP-------------DGKTALHAAVYTYPTEVIKQLFLHEE  222 (547)
Q Consensus       159 ---~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~-------------~g~t~Lh~A~~~~~~~~v~~Ll~~~~  222 (547)
                         ...|..|.||||+|+..|+.+++++|+++|++++..+.             .|.||||+|+..|+.+++++|+++  
T Consensus        66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--  143 (232)
T 2rfa_A           66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH--  143 (232)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT--
T ss_pred             ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC--
Confidence               35677999999999999999999999999999988665             699999999999999999999944  


Q ss_pred             cchhhhhhccCCCcHHhHHHhcCChHHH----HHHhccCCCcce----ecCCCCCchHHHHHHHcCCHHHHHHHhhcCCC
Q 008977          223 KRSLTAVRDKYGWTPLHHAAYSGRELTS----KLLLDHDKSAAF----IGGKDRNMTALHLAAASGHIMVVDRILSSCDG  294 (547)
Q Consensus       223 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v----~~Ll~~~~~~~~----~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  294 (547)
                       +..++.+|..|+||||+|+..|+.+++    ++|+++|++...    ...+..|.||||+|++.|+.+++++|+++++.
T Consensus       144 -ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          144 -GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             -TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence             445677889999999999999998887    899998886641    12344699999999999999999999998765


Q ss_pred             c
Q 008977          295 C  295 (547)
Q Consensus       295 ~  295 (547)
                      .
T Consensus       223 ~  223 (232)
T 2rfa_A          223 I  223 (232)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.3e-33  Score=265.54  Aligned_cols=217  Identities=22%  Similarity=0.206  Sum_probs=172.1

Q ss_pred             ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCC
Q 008977           77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPH  156 (547)
Q Consensus        77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  156 (547)
                      .+|.+|.||||+|+..|+.+++++|++.+.....            .++.++..|.||||+|+..|+.+++++|+++|++
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   70 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA------------FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD   70 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CC------------CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHH------------HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4688999999999999999999999987654211            1567788999999999999999999999999988


Q ss_pred             CCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCC------CCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhh
Q 008977          157 VPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP------AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVR  230 (547)
Q Consensus       157 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~------~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~  230 (547)
                      ++ ..+..|.||||+|+..|+.+++++|++.++++      +..+..|.||||+|+..++.+++++|+++   +..++.+
T Consensus        71 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~  146 (236)
T 1ikn_D           71 PE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL---GADVNAQ  146 (236)
T ss_dssp             SC-CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH---TCCTTCC
T ss_pred             CC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCC
Confidence            86 67889999999999999999999999998763      45677889999999999999999999843   3445566


Q ss_pred             cc-CCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCcc-ccccCCCCcHHH
Q 008977          231 DK-YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCC-AKVDERGWNFLH  308 (547)
Q Consensus       231 d~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~g~t~Lh  308 (547)
                      +. .|+||||+|+..|+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|++++++.. ..++..|.|+.+
T Consensus       147 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  224 (236)
T 1ikn_D          147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT--YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD  224 (236)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC--TTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc--CCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHh
Confidence            66 88999999999999999999999888776553  358899999999999999999998888654 345666777655


Q ss_pred             HHH
Q 008977          309 FAM  311 (547)
Q Consensus       309 ~A~  311 (547)
                      .+.
T Consensus       225 ~~~  227 (236)
T 1ikn_D          225 TES  227 (236)
T ss_dssp             CC-
T ss_pred             hhc
Confidence            443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-34  Score=286.40  Aligned_cols=259  Identities=15%  Similarity=0.080  Sum_probs=197.3

Q ss_pred             cCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcc---ccc----------
Q 008977           11 KGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSV---LFQ----------   77 (547)
Q Consensus        11 ~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~---~~~----------   77 (547)
                      ....+.+++|+++|++++..+..|.+++       +       |+.++  ++.|++.-- .+..   ...          
T Consensus        29 ~~~~dlv~~ll~~ga~i~~~~~~g~~~~-------~-------g~~~~--v~~Ll~~g~-~~~~~~~~~a~~~~~~~~~~   91 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPLKIMKALPSPVVND-------N-------EQKMK--LEAFLQRLL-FPEIQEMPTSLNNDSSNRNS   91 (327)
T ss_dssp             ECCTTCCCSTTTSSCCCEECBCCCCCCC-------H-------HHHHH--HHHHHHHHH-C-------------------
T ss_pred             hhcCchHHHHhhCCcccccCCCCCCccc-------C-------chhHH--HHHHHHhcc-CCccccchHhhhcccccccc
Confidence            4455678899999999999998999988       4       78888  999976321 1111   000          


Q ss_pred             -cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcc-cccCCCCHhHHHHHcCCHHHHHHHHhhCC
Q 008977           78 -ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGM-TNEEQNTPLHEAVRLRSVDVAKILIVADP  155 (547)
Q Consensus        78 -~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~  155 (547)
                       ......+.+|.|+..+..+++++|++.+.+                ++. +|..|.||||+|+..|+.+++++|+++|+
T Consensus        92 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~d----------------vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga  155 (327)
T 1sw6_A           92 EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN----------------LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS  155 (327)
T ss_dssp             ------------CHHHHHHHHHHHCTTSCCC----------------SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cccCCccchhHHHHHhhHHHHHHHHHhcCCC----------------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence             111123345888888888999999888776                667 79999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHCCC---HHHHHHHHHhC-CCCCCCCCCCchHHHHHHh----cCCHHHHHHHHcccc-----
Q 008977          156 HVPYSANRNNETPLYMAAANGS---VEIVAKILQKC-PSPAHEGPDGKTALHAAVY----TYPTEVIKQLFLHEE-----  222 (547)
Q Consensus       156 ~~~~~~~~~g~tpL~~A~~~g~---~~iv~~Ll~~~-~~~~~~~~~g~t~Lh~A~~----~~~~~~v~~Ll~~~~-----  222 (547)
                      +++ .+|..|.||||+|+..|+   .++++.|++.+ ++++..+..|.||||+|+.    .++.++++.|++...     
T Consensus       156 d~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~  234 (327)
T 1sw6_A          156 NRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK  234 (327)
T ss_dssp             CTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCC-CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhc
Confidence            987 889999999999999999   68888888887 6788899999999999999    899999999985422     


Q ss_pred             ------------cchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhh
Q 008977          223 ------------KRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS  290 (547)
Q Consensus       223 ------------~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  290 (547)
                                  .+..++.++..|.||||.|+.      +++|++++  ++.  .+..|+||||+|++.|+.+++++|++
T Consensus       235 ~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~--~n~--~d~~G~TpLh~A~~~g~~~~v~~Ll~  304 (327)
T 1sw6_A          235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM--LNA--QDSNGDTCLNIAARLGNISIVDALLD  304 (327)
T ss_dssp             GGGCCEEEC----------------CHHHHHCS------HHHHHHHT--TTC--CCTTSCCHHHHHHHHCCHHHHHHHHH
T ss_pred             ccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC--CCC--CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                        145677789999999999996      89999884  332  34579999999999999999999999


Q ss_pred             cCCCccccccCCCCcHHHHHHHhc
Q 008977          291 SCDGCCAKVDERGWNFLHFAMVSL  314 (547)
Q Consensus       291 ~~~~~~~~~d~~g~t~Lh~A~~~~  314 (547)
                      ++++. +.+|.+|+||||+|+++|
T Consensus       305 ~Gad~-~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          305 YGADP-FIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TTCCT-TCCCTTSCCGGGGTCC--
T ss_pred             cCCCC-cccCCCCCCHHHHHHhcC
Confidence            99886 667999999999998653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=4.2e-33  Score=262.16  Aligned_cols=219  Identities=19%  Similarity=0.156  Sum_probs=187.4

Q ss_pred             hcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcC
Q 008977           29 VTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQ  108 (547)
Q Consensus        29 ~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~  108 (547)
                      ..+.+|+|+|       |+|+..  |+.++  +++|++.....+..++..|..|.||||+|+..|+.++|++|++++++ 
T Consensus         3 ~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-   70 (236)
T 1ikn_D            3 QLTEDGDSFL-------HLAIIH--EEKAL--TMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-   70 (236)
T ss_dssp             ----CCCCTT-------HHHHHT--TCSSS--SSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-
T ss_pred             cCCCCCCchh-------HHHHHc--CChhH--HHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            3556788888       999999  99999  99997754444557889999999999999999999999999998876 


Q ss_pred             CchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC-----CCCCCCCCCcHHHHHHHCCCHHHHHH
Q 008977          109 PRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV-----PYSANRNNETPLYMAAANGSVEIVAK  183 (547)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~iv~~  183 (547)
                                     ++.++..|.||||+|+..|+.+++++|++.+++.     ....+..|.||||+|+..|+.+++++
T Consensus        71 ---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  135 (236)
T 1ikn_D           71 ---------------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL  135 (236)
T ss_dssp             ---------------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ---------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHH
Confidence                           5677899999999999999999999999998642     34678899999999999999999999


Q ss_pred             HHHhCCCCCCCCC-CCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcce
Q 008977          184 ILQKCPSPAHEGP-DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAF  262 (547)
Q Consensus       184 Ll~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~  262 (547)
                      |+++|++++..+. .|.||||+|+..++.+++++|+++   +..++.+|..|+||||+|+..|+.+++++|+++|++...
T Consensus       136 Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~  212 (236)
T 1ikn_D          136 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ  212 (236)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS
T ss_pred             HHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh
Confidence            9999999999987 999999999999999999999954   445677899999999999999999999999999998775


Q ss_pred             ecCCCCCchHHHHHH
Q 008977          263 IGGKDRNMTALHLAA  277 (547)
Q Consensus       263 ~~~~~~g~tpL~~A~  277 (547)
                      ...+..|.||.+.+.
T Consensus       213 ~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          213 MLPESEDEESYDTES  227 (236)
T ss_dssp             SCCCCCTTTCCCCC-
T ss_pred             cCCccchHHHHhhhc
Confidence            555556777766544

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.98  E-value=1.1e-32  Score=265.31  Aligned_cols=226  Identities=17%  Similarity=0.092  Sum_probs=174.1

Q ss_pred             cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHc---CCHHHHHHH
Q 008977           74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL---RSVDVAKIL  150 (547)
Q Consensus        74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~iv~~L  150 (547)
                      ..+..|..|.||||.|++.|+.++|+.|++.+.+...++..        .....+..|.||||+|+..   |+.+++++|
T Consensus         5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L   76 (273)
T 2pnn_A            5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTD--------SEFKDPETGKTCLLKAMLNLHNGQNDTIALL   76 (273)
T ss_dssp             ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTS--------GGGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred             cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCC--------cccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence            34567889999999999999999999999987643322110        0113578999999999987   999999999


Q ss_pred             HhhCCCCC----------CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCC--------------CCchHHHHHH
Q 008977          151 IVADPHVP----------YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP--------------DGKTALHAAV  206 (547)
Q Consensus       151 l~~~~~~~----------~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~g~t~Lh~A~  206 (547)
                      ++.|++..          ...|..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+
T Consensus        77 l~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~  156 (273)
T 2pnn_A           77 LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA  156 (273)
T ss_dssp             HHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHH
T ss_pred             HHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHH
Confidence            99875421          12567899999999999999999999999999998886              7999999999


Q ss_pred             hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCC---------hHHHHHHhccCCCcce-----ecCCCCCchH
Q 008977          207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR---------ELTSKLLLDHDKSAAF-----IGGKDRNMTA  272 (547)
Q Consensus       207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~~-----~~~~~~g~tp  272 (547)
                      ..++.+++++|++....+..++.+|..|+||||+|+..|+         .+++++|+++|++.+.     ...+..|.||
T Consensus       157 ~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~Tp  236 (273)
T 2pnn_A          157 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP  236 (273)
T ss_dssp             HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH
T ss_pred             HcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCH
Confidence            9999999999994211455677889999999999999988         7999999999887753     1234579999


Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHH
Q 008977          273 LHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFL  307 (547)
Q Consensus       273 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  307 (547)
                      ||+|++.|+.+++++|+++++.........+++|-
T Consensus       237 L~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          237 LALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            99999999999999999999855555566665553

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=2.7e-31  Score=243.17  Aligned_cols=194  Identities=24%  Similarity=0.278  Sum_probs=173.5

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC
Q 008977           79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP  158 (547)
Q Consensus        79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~  158 (547)
                      +..+.||||.|+..|+.+.++.|++.+...               ++..|..|.||||+|+..|+.+++++|+++|++++
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   66 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ---------------VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN   66 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC---------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCC---------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            356889999999999999999999876522               56778999999999999999999999999999987


Q ss_pred             CCCCCCCCcHHHHHHHCCCHHHHHHHH-HhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          159 YSANRNNETPLYMAAANGSVEIVAKIL-QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                       ..+..|.||||+|+..|+.+++++|+ ..+++++..+..|.||||+|+..++.+++++|++  ..+...+.+|..|+||
T Consensus        67 -~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~~g~t~  143 (201)
T 3hra_A           67 -LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE--DGREDIDFQNDFGYTA  143 (201)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHH--HCCCCTTCCCTTSCCH
T ss_pred             -CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCcCCCCCCCCCH
Confidence             78899999999999999999999999 5557889999999999999999999999999993  3335677889999999


Q ss_pred             HhHHHhcCC-----hHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcC
Q 008977          238 LHHAAYSGR-----ELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSC  292 (547)
Q Consensus       238 Lh~A~~~g~-----~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  292 (547)
                      ||+|+..++     .+++++|+++|++++..+  ..|.||||+|++.|+.+++++|+++|
T Consensus       144 L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          144 LIEAVGLREGNQLYQDIVKLLMENGADQSIKD--NSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHhccchhhHHHHHHHHHHCCCCCCccC--CCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999988     999999999998887654  45999999999999999999999865

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=6.8e-32  Score=257.18  Aligned_cols=199  Identities=19%  Similarity=0.131  Sum_probs=168.4

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHHHHhhcCCchhhhhhhhHHHHHhcc----cccCCCCHhHHHHHc---CCHHHHHH
Q 008977           81 KGDSPLHLAAKKGDAA----IVKFLIKFAKKQPRDLQRGVKSAERQMLGM----TNEEQNTPLHEAVRL---RSVDVAKI  149 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~---g~~~iv~~  149 (547)
                      .|+||||.|+..|+.+    ++++|++.+.+                ++.    +|..|.||||+|+..   |+.+++++
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~----------------i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~   64 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY----------------LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP   64 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC----------------TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cccccccCCCCCCCHHHHHHHccccchHHHHHH
Confidence            3789999999999998    55666666655                444    689999999999999   99999999


Q ss_pred             HHhhCCCCCCC----------CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCC-------------CchHHHHHH
Q 008977          150 LIVADPHVPYS----------ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-------------GKTALHAAV  206 (547)
Q Consensus       150 Ll~~~~~~~~~----------~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~-------------g~t~Lh~A~  206 (547)
                      |++.|++....          .|..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+
T Consensus        65 Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~  144 (256)
T 2etb_A           65 LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA  144 (256)
T ss_dssp             HHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHH
T ss_pred             HHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHH
Confidence            99988765422          3467999999999999999999999999999998876             999999999


Q ss_pred             hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh--cCChH-------HHHHHhccCCCcce-----ecCCCCCchH
Q 008977          207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY--SGREL-------TSKLLLDHDKSAAF-----IGGKDRNMTA  272 (547)
Q Consensus       207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~--~g~~~-------~v~~Ll~~~~~~~~-----~~~~~~g~tp  272 (547)
                      ..|+.+++++|++....+..++.+|..|+||||+|+.  .++.+       ++++|+++|++...     ...+..|.||
T Consensus       145 ~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tp  224 (256)
T 2etb_A          145 CTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTP  224 (256)
T ss_dssp             HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCH
T ss_pred             HcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCH
Confidence            9999999999994211555677889999999999999  77887       99999999887721     2234469999


Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCc
Q 008977          273 LHLAAASGHIMVVDRILSSCDGC  295 (547)
Q Consensus       273 L~~A~~~g~~~~v~~Ll~~~~~~  295 (547)
                      ||+|+..|+.+++++|++++++.
T Consensus       225 L~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          225 LKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCC
Confidence            99999999999999999987654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.1e-31  Score=255.74  Aligned_cols=209  Identities=21%  Similarity=0.210  Sum_probs=174.3

Q ss_pred             CccceeEeeecCCceecchhhHHHHHhhcCCccccc----cccCCChHHHHHHHc---CCHHHHHHHHHHhhcCCchhhh
Q 008977           42 ITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQ----ADAKGDSPLHLAAKK---GDAAIVKFLIKFAKKQPRDLQR  114 (547)
Q Consensus        42 ~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~----~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~  114 (547)
                      +||||+|+..  |+.+.  ++.+++.+...+..++.    .|..|.||||+|+..   |+.++|++|++.+++...... 
T Consensus         3 ~t~L~~A~~~--g~~~~--v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~-   77 (256)
T 2etb_A            3 RDRLFSVVSR--GVPEE--LTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP-   77 (256)
T ss_dssp             HHHHHHHHHH--TCGGG--GTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC-
T ss_pred             ccHHHHHHHc--CCHHH--HHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh-
Confidence            4555999999  99998  88887766667778887    899999999999999   999999999999887431000 


Q ss_pred             hhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCC-------------CCcHHHHHHHCCCHHHH
Q 008977          115 GVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRN-------------NETPLYMAAANGSVEIV  181 (547)
Q Consensus       115 ~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~iv  181 (547)
                          ........+|..|.||||+|+..|+.+++++|+++|++++ ..+..             |.||||+|+..|+.+++
T Consensus        78 ----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v  152 (256)
T 2etb_A           78 ----LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV  152 (256)
T ss_dssp             ----GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHH
T ss_pred             ----hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence                0000011245779999999999999999999999999987 45544             99999999999999999


Q ss_pred             HHHHH---hCCCCCCCCCCCchHHHHHHh--cCCHH-------HHHHHHcccccch----hhhhhccCCCcHHhHHHhcC
Q 008977          182 AKILQ---KCPSPAHEGPDGKTALHAAVY--TYPTE-------VIKQLFLHEEKRS----LTAVRDKYGWTPLHHAAYSG  245 (547)
Q Consensus       182 ~~Ll~---~~~~~~~~~~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~~~~~~----~~~~~d~~g~tpLh~A~~~g  245 (547)
                      ++|++   +|++++..|..|+||||+|+.  .++.+       ++++|++++....    ..+.+|..|+||||+|+..|
T Consensus       153 ~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  232 (256)
T 2etb_A          153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG  232 (256)
T ss_dssp             HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             HHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhC
Confidence            99999   999999999999999999999  88888       9999995443321    01778999999999999999


Q ss_pred             ChHHHHHHhccCCCc
Q 008977          246 RELTSKLLLDHDKSA  260 (547)
Q Consensus       246 ~~~~v~~Ll~~~~~~  260 (547)
                      +.+++++|+++|.+.
T Consensus       233 ~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          233 KIEIFRHILQREFSG  247 (256)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCCCC
Confidence            999999999988654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.7e-31  Score=255.62  Aligned_cols=214  Identities=22%  Similarity=0.272  Sum_probs=176.1

Q ss_pred             hhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccc----ccccCCChHHHHHHHc---CCHHH
Q 008977           25 LESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLF----QADAKGDSPLHLAAKK---GDAAI   97 (547)
Q Consensus        25 ~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~----~~~~~g~t~Lh~Aa~~---g~~~~   97 (547)
                      ...+..+..|+|+|       |+|+..  |+.++  ++.|++.....+..++    ..|..|.||||+|+..   |+.++
T Consensus         4 a~~~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~   72 (273)
T 2pnn_A            4 AGEKPPRLYDRRSI-------FDAVAQ--SNCQE--LESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT   72 (273)
T ss_dssp             -------CCCHHHH-------HHHHHT--TCSST--TTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHH
T ss_pred             ccCCCCCcccchHH-------HHHHHc--CCHHH--HHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHH
Confidence            33445667888888       999999  99999  9999886554555544    4688999999999987   99999


Q ss_pred             HHHHHHHhhcCCchhhhhhhhHHHHHhcc----cccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC----------
Q 008977           98 VKFLIKFAKKQPRDLQRGVKSAERQMLGM----TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR----------  163 (547)
Q Consensus        98 v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~----------  163 (547)
                      |++|++++++...         .+.+++.    +|..|.||||+|+..|+.+++++|+++|++++ ..+.          
T Consensus        73 v~~Ll~~ga~~~~---------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~  142 (273)
T 2pnn_A           73 IALLLDVARKTDS---------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGR  142 (273)
T ss_dssp             HHHHHHHHHHTTC---------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSS
T ss_pred             HHHHHHhhccccc---------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-cccccccccccccc
Confidence            9999999876422         1122333    56789999999999999999999999999987 4444          


Q ss_pred             ----CCCcHHHHHHHCCCHHHHHHHHH---hCCCCCCCCCCCchHHHHHHhcCC---------HHHHHHHHcccccch--
Q 008977          164 ----NNETPLYMAAANGSVEIVAKILQ---KCPSPAHEGPDGKTALHAAVYTYP---------TEVIKQLFLHEEKRS--  225 (547)
Q Consensus       164 ----~g~tpL~~A~~~g~~~iv~~Ll~---~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~--  225 (547)
                          .|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..++         .+++++|++++....  
T Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~  222 (273)
T 2pnn_A          143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT  222 (273)
T ss_dssp             CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccc
Confidence                79999999999999999999999   999999999999999999999888         799999995443321  


Q ss_pred             --hhhhhccCCCcHHhHHHhcCChHHHHHHhccCCC
Q 008977          226 --LTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKS  259 (547)
Q Consensus       226 --~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  259 (547)
                        ..+.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus       223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence              1135899999999999999999999999999983

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=7.8e-31  Score=240.11  Aligned_cols=189  Identities=21%  Similarity=0.235  Sum_probs=170.1

Q ss_pred             ccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHH
Q 008977           43 TASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ  122 (547)
Q Consensus        43 ~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  122 (547)
                      ||||.|+..  |+.+.  ++.+   +...+..++..|..|.||||+|+..|+.++|++|++++++               
T Consensus         7 ~~L~~A~~~--g~~~~--v~~l---l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------   64 (201)
T 3hra_A            7 GALLEAANQ--RDTKK--VKEI---LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD---------------   64 (201)
T ss_dssp             THHHHHHHT--TCHHH--HHHH---HTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---------------
T ss_pred             cHHHHHHHh--ccHHH--HHHH---HHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------
Confidence            444999999  99888  8888   4456668899999999999999999999999999999877               


Q ss_pred             HhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC-CCCCCCCCCCchH
Q 008977          123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC-PSPAHEGPDGKTA  201 (547)
Q Consensus       123 ~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~g~t~  201 (547)
                       ++.++..|.||||+|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|+++| ++++..+..|.||
T Consensus        65 -~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~  143 (201)
T 3hra_A           65 -INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA  143 (201)
T ss_dssp             -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCH
T ss_pred             -CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCH
Confidence             56778999999999999999999999996655434478999999999999999999999999999 8999999999999


Q ss_pred             HHHHHhcCC-----HHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccC
Q 008977          202 LHAAVYTYP-----TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD  257 (547)
Q Consensus       202 Lh~A~~~~~-----~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~  257 (547)
                      ||+|+..++     .+++++|++++   ..++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       144 L~~A~~~~~~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          144 LIEAVGLREGNQLYQDIVKLLMENG---ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHSSCCSHHHHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHhccchhhHHHHHHHHHHCC---CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999998     99999999544   446778999999999999999999999999875

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.2e-30  Score=229.21  Aligned_cols=158  Identities=31%  Similarity=0.365  Sum_probs=118.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR  163 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  163 (547)
                      ++|+.||+.|+.++|+.|++.|++                ++.+|..|.||||+|+..++.+++++|++.|++++ .+|.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad----------------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~   68 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD----------------VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDS   68 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhcc
Confidence            467888888888888888887766                56677888888888888888888888888887776 6777


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977          164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY  243 (547)
Q Consensus       164 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~  243 (547)
                      .|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++   +..++.+|.+|+||||+|+.
T Consensus        69 ~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~  145 (169)
T 4gpm_A           69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK---GADVNTSDSDGRTPLDLARE  145 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHH
Confidence            888888888888888888888888888877777778888888777777777777743   33455667777777777777


Q ss_pred             cCChHHHHHHhccCCCcc
Q 008977          244 SGRELTSKLLLDHDKSAA  261 (547)
Q Consensus       244 ~g~~~~v~~Ll~~~~~~~  261 (547)
                      .|+.+++++|+++|++.+
T Consensus       146 ~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          146 HGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             TTCHHHHHHHHTC-----
T ss_pred             cCCHHHHHHHHHCCCCcC
Confidence            777777777777776553

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=6.7e-31  Score=232.48  Aligned_cols=160  Identities=26%  Similarity=0.401  Sum_probs=119.2

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK   81 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~   81 (547)
                      .++|+.|+++|+.++++.|+++|++++.++.+|+|||       |+|+..  ++.++  ++++++    .+.+++.+|.+
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l-------~~a~~~--~~~~~--~~~ll~----~gad~~~~d~~   69 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPL-------HHAAEN--GHKEV--VKLLIS----KGADVNAKDSD   69 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-------HHHHHc--CCHHH--HHHHHh----cccchhhhccC
Confidence            3568888888888888888888888887777777777       888777  77777  777755    56667777777


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA  161 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  161 (547)
                      |.||||+|+..|+.++|++|+++|++                ++.+|..|.||||+|+..|+.+++++|+++|++++ .+
T Consensus        70 g~TpLh~A~~~g~~~~v~~Ll~~gad----------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~  132 (169)
T 4gpm_A           70 GRTPLHHAAENGHKEVVKLLISKGAD----------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TS  132 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-cc
Confidence            88888888888888888888777765                55667777888888888888888888887777765 66


Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCC
Q 008977          162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAH  193 (547)
Q Consensus       162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~  193 (547)
                      |..|.||||+|+..|+.+++++|+++|++++.
T Consensus       133 d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          133 DSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            77777888888888888888888877777653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=7.8e-31  Score=250.44  Aligned_cols=205  Identities=17%  Similarity=0.091  Sum_probs=169.2

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHH----HhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHH---HcCCHHHHHHHH
Q 008977           79 DAKGDSPLHLAAKKGDAAIVKFLIK----FAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAV---RLRSVDVAKILI  151 (547)
Q Consensus        79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~---~~g~~~iv~~Ll  151 (547)
                      +..|+|+||.|++.|+.+.|+.|++    .+.+....            -...+..|.||||+|+   +.|+.+++++|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~------------~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll   69 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE------------EFREPSTGKTCLPKALLNLSAGRNDTIPILL   69 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG------------GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh------------hhhccCCCCcHHHHHHHHhhcCCHHHHHHHH
Confidence            4568999999999999997666665    55542110            0122477999999999   779999999999


Q ss_pred             hhCCCC----------CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC--------------CCCchHHHHHHh
Q 008977          152 VADPHV----------PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG--------------PDGKTALHAAVY  207 (547)
Q Consensus       152 ~~~~~~----------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~--------------~~g~t~Lh~A~~  207 (547)
                      +.+++.          ....|..|.||||+|+..|+.+++++|+++|++++..+              ..|.||||+|+.
T Consensus        70 ~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~  149 (260)
T 3jxi_A           70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC  149 (260)
T ss_dssp             HHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHH
T ss_pred             HhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHH
Confidence            986432          12345589999999999999999999999999999988              689999999999


Q ss_pred             cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCC---------hHHHHHHhccCCCcce-----ecCCCCCchHH
Q 008977          208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR---------ELTSKLLLDHDKSAAF-----IGGKDRNMTAL  273 (547)
Q Consensus       208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~~-----~~~~~~g~tpL  273 (547)
                      .|+.+++++|++.+..+..++.+|..|+||||+|+..++         .+++++|+++|++++.     ...+..|.|||
T Consensus       150 ~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL  229 (260)
T 3jxi_A          150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL  229 (260)
T ss_dssp             TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred             cCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH
Confidence            999999999995221556678889999999999999887         6999999999987732     23345799999


Q ss_pred             HHHHHcCCHHHHHHHhhcCCCc
Q 008977          274 HLAAASGHIMVVDRILSSCDGC  295 (547)
Q Consensus       274 ~~A~~~g~~~~v~~Ll~~~~~~  295 (547)
                      |+|++.|+.+++++|++++++.
T Consensus       230 ~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          230 MMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhCCCc
Confidence            9999999999999999998765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=5.1e-30  Score=244.76  Aligned_cols=209  Identities=21%  Similarity=0.195  Sum_probs=173.6

Q ss_pred             ccceeEeeecCCceecchhhHHHHHhhcCCccccccc----cCCChHHHHHH---HcCCHHHHHHHHHHhhcCCchhhhh
Q 008977           43 TASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQAD----AKGDSPLHLAA---KKGDAAIVKFLIKFAKKQPRDLQRG  115 (547)
Q Consensus        43 ~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~----~~g~t~Lh~Aa---~~g~~~~v~~Ll~~~~~~~~~~~~~  115 (547)
                      |+||.|+..  |+.+.  ++.|++.+...+..++..+    ..|.||||+|+   +.|+.++|++|++.+++......  
T Consensus         7 ~~L~~A~~~--g~~~~--v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~--   80 (260)
T 3jxi_A            7 PILFDIVSR--GSPDG--LEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE--   80 (260)
T ss_dssp             HHHHHHHHH--TCGGG--GTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH--
T ss_pred             HHHHHHHHh--CCHHH--HHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh--
Confidence            344999999  99999  9988886666677776555    67999999999   78999999999999876432100  


Q ss_pred             hhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCC--------------CCCCcHHHHHHHCCCHHHH
Q 008977          116 VKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN--------------RNNETPLYMAAANGSVEIV  181 (547)
Q Consensus       116 ~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~iv  181 (547)
                         .....++..|..|.||||+|+..|+.+++++|+++|++++ ..+              ..|.||||+|+..|+.+++
T Consensus        81 ---~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  156 (260)
T 3jxi_A           81 ---FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV  156 (260)
T ss_dssp             ---HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHH
T ss_pred             ---hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHHHH
Confidence               0001134456689999999999999999999999999987 455              6899999999999999999


Q ss_pred             HHHHH---hCCCCCCCCCCCchHHHHHHhcCC---------HHHHHHHHcccccch----hhhhhccCCCcHHhHHHhcC
Q 008977          182 AKILQ---KCPSPAHEGPDGKTALHAAVYTYP---------TEVIKQLFLHEEKRS----LTAVRDKYGWTPLHHAAYSG  245 (547)
Q Consensus       182 ~~Ll~---~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~----~~~~~d~~g~tpLh~A~~~g  245 (547)
                      ++|++   .|++++..|..|+||||+|+..++         .+++++|++++....    ..+.+|..|+||||+|+..|
T Consensus       157 ~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  236 (260)
T 3jxi_A          157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG  236 (260)
T ss_dssp             HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             HHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC
Confidence            99999   999999999999999999998877         689999995443321    11678999999999999999


Q ss_pred             ChHHHHHHhccCCCcc
Q 008977          246 RELTSKLLLDHDKSAA  261 (547)
Q Consensus       246 ~~~~v~~Ll~~~~~~~  261 (547)
                      +.+++++|+++|++..
T Consensus       237 ~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          237 KIGIFQHIIRREIADA  252 (260)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCcc
Confidence            9999999999987553

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=2.6e-28  Score=221.58  Aligned_cols=164  Identities=23%  Similarity=0.229  Sum_probs=129.0

Q ss_pred             cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977           74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA  153 (547)
Q Consensus        74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  153 (547)
                      .++.+|..|.||||+|+..|+.+++++|++.+.+                ++.++..|.||||+|+..|+.+++++|++.
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   90 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK----------------LEDKDIEGSTALIWAVKNNRLGIAEKLLSK   90 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc----------------cccccccCccHHHHHHHcCCHHHHHHHHHC
Confidence            4566788888888888888888888888888765                456677888888888888888888888888


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccC
Q 008977          154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKY  233 (547)
Q Consensus       154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~  233 (547)
                      |++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++   +..++.+|..
T Consensus        91 g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~  166 (192)
T 2rfm_A           91 GSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL---GADISARDLT  166 (192)
T ss_dssp             TCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCBCTT
T ss_pred             CCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCC
Confidence            88776 6777888888888888888888888888888887777788888888877777777777743   3335556777


Q ss_pred             CCcHHhHHHhcCChHHHHHHhccC
Q 008977          234 GWTPLHHAAYSGRELTSKLLLDHD  257 (547)
Q Consensus       234 g~tpLh~A~~~g~~~~v~~Ll~~~  257 (547)
                      |.||||+|+..|+.+++++|++++
T Consensus       167 g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          167 GLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhCcHHHHHHHHhcc
Confidence            777777777777777777777653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=236.71  Aligned_cols=195  Identities=21%  Similarity=0.224  Sum_probs=173.2

Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC
Q 008977           80 AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY  159 (547)
Q Consensus        80 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~  159 (547)
                      ..+.+++|.|+..|+.+.++.+++.+.+              ..++.+|..|.||||+|+..|+.+++++|++.|+....
T Consensus        74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~--------------~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~  139 (276)
T 4hbd_A           74 LACRSDAHPELVRRHLVTFRAMSARLLD--------------YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVD  139 (276)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHCHHHHH--------------HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTT
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHh--------------hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCC
Confidence            3457889999999999999999886543              34788999999999999999999999999999984444


Q ss_pred             CCCCCCCcHHHHHH-----HCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCC
Q 008977          160 SANRNNETPLYMAA-----ANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYG  234 (547)
Q Consensus       160 ~~~~~g~tpL~~A~-----~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g  234 (547)
                      ..+..|.||||+|+     ..++.+++++|++.|.+.+..+..|.||||+|+..|+.+++++|+++   +..++.+|..|
T Consensus       140 ~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~---gad~n~~d~~G  216 (276)
T 4hbd_A          140 KQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC---EADVNVQDDDG  216 (276)
T ss_dssp             CCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTS
T ss_pred             CCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCCCCCC
Confidence            88999999999999     66889999999999999988999999999999999999999999944   44577789999


Q ss_pred             CcHHhHHHhcCChHHHHHHhc-cCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCC
Q 008977          235 WTPLHHAAYSGRELTSKLLLD-HDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCD  293 (547)
Q Consensus       235 ~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  293 (547)
                      +||||+|+..|+.+++++|++ .|.+++..+  ..|.||||+|+..|+.+++++|+++..
T Consensus       217 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d--~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          217 STALMCACEHGHKEIAGLLLAVPSCDISLTD--RDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTSTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCCCcCcC--CCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            999999999999999999999 888877654  469999999999999999999998753

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=9.3e-29  Score=237.91  Aligned_cols=191  Identities=20%  Similarity=0.236  Sum_probs=169.2

Q ss_pred             ccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHH
Q 008977           43 TASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ  122 (547)
Q Consensus        43 ~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  122 (547)
                      +++|.|+..  ++.+.  ++.++....  ...++..|.+|.||||+|+..|+.++|++|++.++..              
T Consensus        78 ~~l~~a~~~--~~~~~--~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~--------------  137 (276)
T 4hbd_A           78 SDAHPELVR--RHLVT--FRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK--------------  137 (276)
T ss_dssp             TTCCHHHHH--HHHHH--HHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC--------------
T ss_pred             cCCCHHHHH--HHHHH--HHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc--------------
Confidence            344999999  99888  888755221  2347788999999999999999999999999998732              


Q ss_pred             HhcccccCCCCHhHHHH-----HcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCC
Q 008977          123 MLGMTNEEQNTPLHEAV-----RLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD  197 (547)
Q Consensus       123 ~l~~~~~~g~t~Lh~A~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  197 (547)
                       ++..+..|.||||+|+     ..++.+++++|++.|.... ..+..|.||||+|+..|+.+++++|+++|++++..|..
T Consensus       138 -~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~  215 (276)
T 4hbd_A          138 -VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD  215 (276)
T ss_dssp             -TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             -CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Confidence             5678999999999999     6789999999999997765 77889999999999999999999999999999999999


Q ss_pred             CchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccC
Q 008977          198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD  257 (547)
Q Consensus       198 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~  257 (547)
                      |.||||+|+..|+.+++++|+.  ..+..++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       216 G~TpLh~A~~~g~~~iv~~Ll~--~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          216 GSTALMCACEHGHKEIAGLLLA--VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHT--STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHh--cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999999993  345567788999999999999999999999999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.3e-27  Score=217.02  Aligned_cols=165  Identities=22%  Similarity=0.152  Sum_probs=151.8

Q ss_pred             HHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchH
Q 008977          122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTA  201 (547)
Q Consensus       122 ~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~  201 (547)
                      .+++.+|..|.||||+|+..|+.+++++|++.+++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  104 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP  104 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            3467889999999999999999999999999999876 778899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCC
Q 008977          202 LHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH  281 (547)
Q Consensus       202 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~  281 (547)
                      ||+|+..++.+++++|+++   +..++.+|..|.||||+|+..|+.+++++|+++|++++..+  ..|.||||+|+..|+
T Consensus       105 L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEH---GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD--LTGLTAEASARIFGR  179 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHT---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC--TTSCBHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--CCCCCHHHHHHHhCc
Confidence            9999999999999999954   44467789999999999999999999999999998877654  469999999999999


Q ss_pred             HHHHHHHhhcC
Q 008977          282 IMVVDRILSSC  292 (547)
Q Consensus       282 ~~~v~~Ll~~~  292 (547)
                      .+++++|++.+
T Consensus       180 ~~~v~~Ll~~~  190 (192)
T 2rfm_A          180 QEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99999999864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.6e-30  Score=241.29  Aligned_cols=191  Identities=21%  Similarity=0.133  Sum_probs=153.1

Q ss_pred             cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977           74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA  153 (547)
Q Consensus        74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  153 (547)
                      ..+..+.+|.||||+|+..|+.++|++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++.
T Consensus        13 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~   76 (229)
T 2vge_A           13 KARRARLNPLVLLLDAALTGELEVVQQAVKEMND----------------PSQPNEEGITALHNAICGANYSIVDFLITA   76 (229)
T ss_dssp             CCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccchhHHHHHHHHcCCHHHHHHHHhcCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            3445667788899999999999999999998776                566788999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC-CCCchHHHHH--HhcCCHHHHHHHHcccccchhhhhh
Q 008977          154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG-PDGKTALHAA--VYTYPTEVIKQLFLHEEKRSLTAVR  230 (547)
Q Consensus       154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~v~~Ll~~~~~~~~~~~~  230 (547)
                      |++++ ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|  +..++.+++++|++.   +...+.+
T Consensus        77 ga~~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~  152 (229)
T 2vge_A           77 GANVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLM  152 (229)
T ss_dssp             TCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTS
T ss_pred             CCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccc
Confidence            98887 778899999999999999999999999999998876 5899999998  888999999999843   3446667


Q ss_pred             ccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHH
Q 008977          231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDR  287 (547)
Q Consensus       231 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  287 (547)
                      |..|.||++.++..+..   +.|++.|++.+....+..|.||||+|+.+|+.++|+.
T Consensus       153 ~~~~~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          153 NSGAVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             GGGEEEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             cCCchHHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            78888888865554433   4667777766555555567777777777777776655

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=6.6e-28  Score=214.82  Aligned_cols=159  Identities=18%  Similarity=0.219  Sum_probs=103.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCC
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN  162 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~  162 (547)
                      .||||.|+..|+.+++++|++.+...               ++.++..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~   66 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNL---------------VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILA   66 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGG---------------GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCccc---------------ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhc
Confidence            46667777777777777666654331               34556666677777777777777777776666655 556


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHH
Q 008977          163 RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA  242 (547)
Q Consensus       163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~  242 (547)
                      ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++   +..++.+|..|.||||+|+
T Consensus        67 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~  143 (172)
T 3v30_A           67 KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTEADSGYTPMDLAV  143 (172)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHH
Confidence            6666777777777777777777766666666666667777777777777777666633   2334555666677777777


Q ss_pred             hcCChHHHHHHhccCCCc
Q 008977          243 YSGRELTSKLLLDHDKSA  260 (547)
Q Consensus       243 ~~g~~~~v~~Ll~~~~~~  260 (547)
                      ..|+.+++++|++++++.
T Consensus       144 ~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A          144 ALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHTCHHHHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHH
Confidence            777777777777666544

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=5.9e-28  Score=212.79  Aligned_cols=157  Identities=20%  Similarity=0.188  Sum_probs=103.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA  161 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  161 (547)
                      ..||||.|+..|+.+++++|++.+.+                ++.++..|.||||+|+. |+.+++++|++.|++++ ..
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~   66 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVN----------------VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LK   66 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCC----------------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CC
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCC----------------ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CC
Confidence            45677777777777777777766544                44556667777777776 77777777777776665 55


Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHH
Q 008977          162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA  241 (547)
Q Consensus       162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A  241 (547)
                      +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++  .....+.+|..|.||||+|
T Consensus        67 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~~g~t~l~~A  144 (162)
T 1ihb_A           67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH--TASNVGHRNHKGDTACDLA  144 (162)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--SCCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--cCCCCCCcCCCCCcHHHHH
Confidence            66677777777777777777777777777666666666666666666666666666622  2222345556666666666


Q ss_pred             HhcCChHHHHHHhccCC
Q 008977          242 AYSGRELTSKLLLDHDK  258 (547)
Q Consensus       242 ~~~g~~~~v~~Ll~~~~  258 (547)
                      +..|+.+++++|+++|+
T Consensus       145 ~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          145 RLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHTTCHHHHHHHHHTC-
T ss_pred             HHcCCHHHHHHHHHhCC
Confidence            66666666666666554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.6e-27  Score=211.17  Aligned_cols=157  Identities=20%  Similarity=0.219  Sum_probs=99.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  160 (547)
                      .|.||||.|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|+++|++++ .
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~   64 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV----------------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-L   64 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC----------------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-C
Confidence            356777777777777777777766544                44556667777777777777777777777666655 5


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhH
Q 008977          161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHH  240 (547)
Q Consensus       161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~  240 (547)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++   +..++.+|..|.||||+
T Consensus        65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~  141 (167)
T 3v31_A           65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES---GADPTIETDSGYNSMDL  141 (167)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHH
Confidence            566667777777777777777777777666666666666666666666666666666532   22234445555555555


Q ss_pred             HHhcCChHHHHHHhccC
Q 008977          241 AAYSGRELTSKLLLDHD  257 (547)
Q Consensus       241 A~~~g~~~~v~~Ll~~~  257 (547)
                      |+..|+.+++++|++++
T Consensus       142 A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A          142 AVALGYRSVQQVIESHL  158 (167)
T ss_dssp             HHHHTCHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHH
Confidence            55555555555555543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=1.7e-27  Score=212.20  Aligned_cols=170  Identities=20%  Similarity=0.129  Sum_probs=147.4

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC
Q 008977          131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP  210 (547)
Q Consensus       131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~  210 (547)
                      +.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            46899999999999999999999988666889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhh
Q 008977          211 TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS  290 (547)
Q Consensus       211 ~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  290 (547)
                      .+++++|+++   +...+.+|..|+||||+|+..|+.+++++|+++|++.+..+  ..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A           82 TDIVGLLLER---DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA--DSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             HHHHHHHHTT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC--CCCCCHHHHHHHhCcHHHHHHHHH
Confidence            9999999944   44467789999999999999999999999999998876654  469999999999999999999999


Q ss_pred             cCCCccccccCCCCcH
Q 008977          291 SCDGCCAKVDERGWNF  306 (547)
Q Consensus       291 ~~~~~~~~~d~~g~t~  306 (547)
                      ++++... .+..|.||
T Consensus       157 ~~~~~~~-~~~~~~~p  171 (172)
T 3v30_A          157 HILKLFQ-SNLVPADP  171 (172)
T ss_dssp             HHHHHSC-C-------
T ss_pred             HHHHHhc-ccCCCCCC
Confidence            9887643 46667665

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=3.8e-27  Score=209.22  Aligned_cols=159  Identities=23%  Similarity=0.307  Sum_probs=107.6

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC
Q 008977           79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP  158 (547)
Q Consensus        79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~  158 (547)
                      ...+.||||.|++.|+.++|++|++++.+                ++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   74 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGAD----------------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN   74 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            34456777777777777777777777655                44566777777777777777777777777777665


Q ss_pred             CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHH
Q 008977          159 YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL  238 (547)
Q Consensus       159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpL  238 (547)
                       ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++++   ...+.+|..|.|||
T Consensus        75 -~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l  150 (169)
T 2y1l_E           75 -AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG---ADVNAQDKFGKTAF  150 (169)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHH
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHH
Confidence             56667777777777777777777777777777766666777777777666666666666332   23445566666666


Q ss_pred             hHHHhcCChHHHHHHhccC
Q 008977          239 HHAAYSGRELTSKLLLDHD  257 (547)
Q Consensus       239 h~A~~~g~~~~v~~Ll~~~  257 (547)
                      |+|+..|+.+++++|++.|
T Consensus       151 ~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          151 DISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHhCCHHHHHHHHHcC
Confidence            6666666666666666543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=4.4e-27  Score=208.33  Aligned_cols=161  Identities=23%  Similarity=0.196  Sum_probs=147.7

Q ss_pred             CCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcC
Q 008977          130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTY  209 (547)
Q Consensus       130 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~  209 (547)
                      .|.||||.|+..|+.+++++|++.+++++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            58899999999999999999999998876 78899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHh
Q 008977          210 PTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRIL  289 (547)
Q Consensus       210 ~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  289 (547)
                      +.+++++|+++   +..++.+|..|.||||+|+..|+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|+
T Consensus        81 ~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           81 YTDIVKMLLDC---GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET--DSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             CHHHHHHHHHH---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHC---CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCcHHHHHHHH
Confidence            99999999943   44567789999999999999999999999999998886654  46999999999999999999999


Q ss_pred             hcCCCcc
Q 008977          290 SSCDGCC  296 (547)
Q Consensus       290 ~~~~~~~  296 (547)
                      +++.+..
T Consensus       156 ~~~~~~~  162 (167)
T 3v31_A          156 SHLLKLL  162 (167)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9876543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.4e-30  Score=259.81  Aligned_cols=239  Identities=15%  Similarity=0.075  Sum_probs=161.8

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977           78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV  157 (547)
Q Consensus        78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  157 (547)
                      .+.+++||||+||+.|+.++|++|++.++....             .+..+..|.||||+|+..|+.+++++|+++|++.
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-------------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~  154 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-------------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE  154 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-------------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH-------------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCc
Confidence            345567999999999999999999998763210             1123456778999999999999999999999752


Q ss_pred             C--CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCC--CCCCCchHHHHHH-hcCCHHHHHHHHcccccchhhhhhcc
Q 008977          158 P--YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH--EGPDGKTALHAAV-YTYPTEVIKQLFLHEEKRSLTAVRDK  232 (547)
Q Consensus       158 ~--~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~--~~~~g~t~Lh~A~-~~~~~~~v~~Ll~~~~~~~~~~~~d~  232 (547)
                      .  ...+.+ .||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+ .+|+.+++++|++++   .       
T Consensus       155 ~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g---a-------  223 (376)
T 2aja_A          155 IMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP---V-------  223 (376)
T ss_dssp             HHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH---H-------
T ss_pred             cccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC---C-------
Confidence            1  112223 8999999999999999999999998776  7888999999999 999999999999432   1       


Q ss_pred             CCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCC---------------------------HHHH
Q 008977          233 YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH---------------------------IMVV  285 (547)
Q Consensus       233 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~---------------------------~~~v  285 (547)
                      .|.||||+|+..|+.+++++|+++|++.....      ++++.|+.+|+                           .+.+
T Consensus       224 ~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~------~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~  297 (376)
T 2aja_A          224 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH------DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDI  297 (376)
T ss_dssp             HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH------TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHH
T ss_pred             ccchHHHHHHHCCCHHHHHHHHhcCccccccc------HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHH
Confidence            27899999999999999999999886653321      23333333333                           4455


Q ss_pred             HHHhhcCCCc----cccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhcc
Q 008977          286 DRILSSCDGC----CAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRL  355 (547)
Q Consensus       286 ~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~~  355 (547)
                      ++|++.....    .....+.+.||||+|+..|+.+.+      .+|++.+   ..+|..|+|++.+|...++.
T Consensus       298 ~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v------~lLl~~~---~v~~~~~~~~~~~~~~~~~~  362 (376)
T 2aja_A          298 RFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC------ALLLSIP---SVLALTKANNYYINETGGRL  362 (376)
T ss_dssp             HHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHH------HHHTTSH---HHHHSCC-------------
T ss_pred             HHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHH------HHHHcCh---HHHHHHHHhccccccccccc
Confidence            5555432110    011234577899999999886432      3444433   56788899998888776543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=5.1e-27  Score=206.78  Aligned_cols=159  Identities=23%  Similarity=0.264  Sum_probs=142.3

Q ss_pred             cCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhc
Q 008977          129 EEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYT  208 (547)
Q Consensus       129 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~  208 (547)
                      +...||||.|+..|+.+++++|++.+++++ ..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            346799999999999999999999999886 778999999999999 999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCc-ceecCCCCCchHHHHHHHcCCHHHHHH
Q 008977          209 YPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSA-AFIGGKDRNMTALHLAAASGHIMVVDR  287 (547)
Q Consensus       209 ~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~g~tpL~~A~~~g~~~~v~~  287 (547)
                      ++.+++++|+++   +..++.+|..|+||||+|+..|+.+++++|+++|++. +..  +..|.||||+|+..|+.+++++
T Consensus        81 ~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~g~t~l~~A~~~~~~~~~~~  155 (162)
T 1ihb_A           81 GFLDTLQTLLEF---QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR--NHKGDTACDLARLYGRNEVVSL  155 (162)
T ss_dssp             TCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC--CTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCc--CCCCCcHHHHHHHcCCHHHHHH
Confidence            999999999944   3456778999999999999999999999999999874 333  3469999999999999999999


Q ss_pred             HhhcCCC
Q 008977          288 ILSSCDG  294 (547)
Q Consensus       288 Ll~~~~~  294 (547)
                      |+++|++
T Consensus       156 Ll~~GAd  162 (162)
T 1ihb_A          156 MQANGAG  162 (162)
T ss_dssp             HHHTC--
T ss_pred             HHHhCCC
Confidence            9998864

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.8e-26  Score=204.79  Aligned_cols=160  Identities=24%  Similarity=0.269  Sum_probs=144.1

Q ss_pred             cccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHH
Q 008977          127 TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV  206 (547)
Q Consensus       127 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~  206 (547)
                      ....+.++|+.|++.|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            35667899999999999999999999999987 77899999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHH
Q 008977          207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD  286 (547)
Q Consensus       207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  286 (547)
                      ..++.+++++|+++   +...+.+|..|.||||+|+..|+.+++++|+++|++.+..+  ..|.||||+|+..|+.++++
T Consensus        89 ~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~~~~~  163 (169)
T 2y1l_E           89 LFGHLEIVEVLLKN---GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD--KFGKTAFDISIDNGNEDLAE  163 (169)
T ss_dssp             HTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHhCCHHHHH
Confidence            99999999999944   34466788999999999999999999999999998876553  46999999999999999999


Q ss_pred             HHhhcC
Q 008977          287 RILSSC  292 (547)
Q Consensus       287 ~Ll~~~  292 (547)
                      +|++.|
T Consensus       164 ~L~~~G  169 (169)
T 2y1l_E          164 ILQKLN  169 (169)
T ss_dssp             HHHTC-
T ss_pred             HHHHcC
Confidence            999864

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=3e-26  Score=199.87  Aligned_cols=150  Identities=24%  Similarity=0.251  Sum_probs=103.9

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCC
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN  162 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~  162 (547)
                      .||||.|++.|+.+++++|++.+.+.                + .+..|.||||+|+..|+.+++++|++.|++++ ..+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~----------------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~   64 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF----------------T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ART   64 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC----------------C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC----------------C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCC
Confidence            46777777777777777777776542                1 36667777777777777777777777777765 566


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHH
Q 008977          163 RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA  242 (547)
Q Consensus       163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~  242 (547)
                      ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++   +..++.+|..|.||||+|+
T Consensus        65 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~  141 (153)
T 1awc_B           65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY---GADVHTQSKFCKTAFDISI  141 (153)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHH
Confidence            7777777777777777777777777777777776777777777777777777766633   2334455666666666666


Q ss_pred             hcCChHHHHHH
Q 008977          243 YSGRELTSKLL  253 (547)
Q Consensus       243 ~~g~~~~v~~L  253 (547)
                      ..|+.+++++|
T Consensus       142 ~~~~~~i~~~L  152 (153)
T 1awc_B          142 DNGNEDLAEIL  152 (153)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcCCHHHHHHh
Confidence            66666666654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=8e-27  Score=206.24  Aligned_cols=161  Identities=25%  Similarity=0.251  Sum_probs=128.1

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977           78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV  157 (547)
Q Consensus        78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  157 (547)
                      .|..|.||||.|++.|+.++++.|++.+...               ++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   68 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN---------------CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV   68 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT---------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC---------------ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence            3566788999999999999999888754321               3455777889999999999999999999888887


Q ss_pred             CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                      + ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++   +..++.+|..|.||
T Consensus        69 ~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~  144 (165)
T 3twr_A           69 H-AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH---GADPTKKNRDGNTP  144 (165)
T ss_dssp             T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCT
T ss_pred             C-ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCh
Confidence            6 6788888999999998999999999988888888888888888888888888888888844   34456678888888


Q ss_pred             HhHHHhcCChHHHHHHhccCC
Q 008977          238 LHHAAYSGRELTSKLLLDHDK  258 (547)
Q Consensus       238 Lh~A~~~g~~~~v~~Ll~~~~  258 (547)
                      ||+|+. ++.+++++|+++|+
T Consensus       145 l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          145 LDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             GGGSCT-TCHHHHHHHHTC--
T ss_pred             hHhHhc-CChHHHHHHhhccc
Confidence            888666 77888888887764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=5.3e-29  Score=232.43  Aligned_cols=129  Identities=18%  Similarity=0.130  Sum_probs=66.8

Q ss_pred             ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977          128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY  207 (547)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~  207 (547)
                      +..|.||||.|+..|+.+++++|++.|++++ ..|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~   96 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS   96 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            3444555666666666666666666555554 455555666666666666666666666555555555555555555555


Q ss_pred             cCCHHHHHHHHcccccchhhhhhc-cCCCcHHhHH--HhcCChHHHHHHhccCCCc
Q 008977          208 TYPTEVIKQLFLHEEKRSLTAVRD-KYGWTPLHHA--AYSGRELTSKLLLDHDKSA  260 (547)
Q Consensus       208 ~~~~~~v~~Ll~~~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~  260 (547)
                      .|+.+++++|++.+   ..++.++ .+|+||||+|  +..|+.+++++|+++|+++
T Consensus        97 ~g~~~~v~~Ll~~g---a~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~  149 (229)
T 2vge_A           97 CNDTVICMALVQHG---AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM  149 (229)
T ss_dssp             TTCHHHHHHHHTTT---CCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcC---CCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc
Confidence            55555555555222   1122222 3444444444  4444444444444444433

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=2.4e-26  Score=201.07  Aligned_cols=154  Identities=23%  Similarity=0.215  Sum_probs=131.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA  161 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  161 (547)
                      +.||||.|+..|+.+++++|++.....               ++..+..|.||||+ +..|+.+++++|+++|++++ ..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~   64 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVH---------------PDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQ   64 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCC---------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcC---------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-Cc
Confidence            468999999999999999999872111               55678889999999 88999999999999998876 77


Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHH
Q 008977          162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA  241 (547)
Q Consensus       162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A  241 (547)
                      |..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.    ...+.+|..|.||||+|
T Consensus        65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~g~t~l~~A  140 (156)
T 1bd8_A           65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELA  140 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT----SCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc----cCCCCcCCCCCCHHHHH
Confidence            88899999999999999999999999999988888899999999999999999988843    44666788888888888


Q ss_pred             HhcCChHHHHHHhcc
Q 008977          242 AYSGRELTSKLLLDH  256 (547)
Q Consensus       242 ~~~g~~~~v~~Ll~~  256 (547)
                      +..|+.+++++|+++
T Consensus       141 ~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          141 LQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHSCCHHHHHHHHTT
T ss_pred             HHcCcHHHHHHHHhh
Confidence            888888888888764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=2.5e-26  Score=205.98  Aligned_cols=166  Identities=25%  Similarity=0.342  Sum_probs=130.2

Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC
Q 008977           80 AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY  159 (547)
Q Consensus        80 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~  159 (547)
                      ..+.+|||.|+..|+.++|++|++.+...               ++.++..|.||||+|+..|+.+++++|++.|++++ 
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-   66 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTEND---------------LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-   66 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSC---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccc---------------ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-
Confidence            34678888888888888888888874432               45667888888888888888888888888888876 


Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHh
Q 008977          160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH  239 (547)
Q Consensus       160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh  239 (547)
                      ..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++++   ..++.+|..|.||||
T Consensus        67 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~  143 (179)
T 3f6q_A           67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG---ALVSICNKYGEMPVD  143 (179)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCSSBCCTTSCCGGG
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCcchhccCCCCcHH
Confidence            67788888888888888888888888888888888888888888888888888888888443   345667788888888


Q ss_pred             HHHhcCChHHHHHHhccCCCcceec
Q 008977          240 HAAYSGRELTSKLLLDHDKSAAFIG  264 (547)
Q Consensus       240 ~A~~~g~~~~v~~Ll~~~~~~~~~~  264 (547)
                      +|+..++.+++++|++.|++.+...
T Consensus       144 ~A~~~~~~~~~~~L~~~g~~~~~~~  168 (179)
T 3f6q_A          144 KAKAPLRELLRERAEKMGQNLNRIP  168 (179)
T ss_dssp             GSCHHHHHHHHHHHHHTTCCCSCBC
T ss_pred             HHHHHHHHHHHHHHHHhhcCcccCC
Confidence            8888888888888888887765543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=8.9e-29  Score=246.70  Aligned_cols=260  Identities=14%  Similarity=0.029  Sum_probs=178.3

Q ss_pred             HHHHHH-cCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCC--ccccccccC
Q 008977            5 LFEAAA-KGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSP--SVLFQADAK   81 (547)
Q Consensus         5 L~~A~~-~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~--~~~~~~~~~   81 (547)
                      ++.|.. .++.+.+++++++|.+       ++|+|       |+|+..  |+.++  +++|++   .+.  ......|..
T Consensus        69 ~~~a~~~~~~~~~~~~l~~~g~~-------~~T~L-------h~Aa~~--G~~e~--v~~Ll~---~ga~~~~~~~~~~~  127 (376)
T 2aja_A           69 LYYAHYNRNAKQLWSDAHKKGIK-------SEVIC-------FVAAIT--GCSSA--LDTLCL---LLTSDEIVKVIQAE  127 (376)
T ss_dssp             HHHHHTTTTCTTHHHHHHHHTCC-------HHHHH-------HHHHHH--CCHHH--HHHHTT---C--CCSSCC--CHH
T ss_pred             HHHHHhcCCCHHHHHHHHHcCCC-------cCCHH-------HHHHHc--CCHHH--HHHHHH---cCCcHHHHHHhccC
Confidence            445555 5778888888877643       34777       999999  99999  999965   222  122245667


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC-C
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY-S  160 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~-~  160 (547)
                      |.||||+||..|+.++|++|++++++...             .+..+.+ .||||+|+..|+.+++++|+++|++++. .
T Consensus       128 ~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~-------------~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~  193 (376)
T 2aja_A          128 NYQAFRLAAENGHLHVLNRLCELAPTEIM-------------AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAM  193 (376)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCTTTHH-------------HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCccc-------------cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhc
Confidence            88999999999999999999999853110             1111222 8999999999999999999999998652 2


Q ss_pred             CCCCCCcHHHHHH-HCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHh
Q 008977          161 ANRNNETPLYMAA-ANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH  239 (547)
Q Consensus       161 ~~~~g~tpL~~A~-~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh  239 (547)
                      .|..|.||||+|+ ..|+.+++++|++.|+       .|.||||.|+.+|+.+++++|++++.   ..+..+    ++++
T Consensus       194 ~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga---~~~~~~----~~l~  259 (376)
T 2aja_A          194 IQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVN---RLKEMH----DAFK  259 (376)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHH---HHHHHH----TTTT
T ss_pred             cCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCc---cccccc----HHHH
Confidence            6778999999999 9999999999999764       38999999999999999999994433   233332    2455


Q ss_pred             HHHhcCChH---------------------------HHHHHhccCCCcc---eecCCCCCchHHHHHHHcCCHHHHHHHh
Q 008977          240 HAAYSGREL---------------------------TSKLLLDHDKSAA---FIGGKDRNMTALHLAAASGHIMVVDRIL  289 (547)
Q Consensus       240 ~A~~~g~~~---------------------------~v~~Ll~~~~~~~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  289 (547)
                      .|+..|+.+                           .+++|++.+.-..   .......+.||||+|++.|+.+++++|+
T Consensus       260 ~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl  339 (376)
T 2aja_A          260 LSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL  339 (376)
T ss_dssp             TTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHT
T ss_pred             HHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHH
Confidence            555555443                           3444443221000   0011224679999999999999999999


Q ss_pred             hcCCCccccccCCCCcHHHHHHHhcCcc
Q 008977          290 SSCDGCCAKVDERGWNFLHFAMVSLDLL  317 (547)
Q Consensus       290 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  317 (547)
                      +.+    ...|..|+|++.+|-..|+..
T Consensus       340 ~~~----~v~~~~~~~~~~~~~~~~~~~  363 (376)
T 2aja_A          340 SIP----SVLALTKANNYYINETGGRLD  363 (376)
T ss_dssp             TSH----HHHHSCC--------------
T ss_pred             cCh----HHHHHHHHhcccccccccccc
Confidence            864    456888999999998888753

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=5.6e-26  Score=198.08  Aligned_cols=151  Identities=20%  Similarity=0.219  Sum_probs=136.1

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC
Q 008977          131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP  210 (547)
Q Consensus       131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~  210 (547)
                      +.||||.|++.|+.+++++|++.|++..  .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            3579999999999999999999998765  58899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHH
Q 008977          211 TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRI  288 (547)
Q Consensus       211 ~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  288 (547)
                      .+++++|+++   +..++.+|..|+||||+|+..|+.+++++|+++|++.+..+  ..|.||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKH---GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS--KFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC--CCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999944   44467788999999999999999999999999998876553  4599999999999999999886

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=2e-26  Score=203.61  Aligned_cols=161  Identities=27%  Similarity=0.308  Sum_probs=142.7

Q ss_pred             cccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHH
Q 008977          127 TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV  206 (547)
Q Consensus       127 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~  206 (547)
                      .|.+|.||||.|++.|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            47788999999999999999999999766555577888999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHH
Q 008977          207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD  286 (547)
Q Consensus       207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  286 (547)
                      ..++.+++++|+++   +..++.+|..|+||||+|+..|+.+++++|+++|++++..+  ..|.||||+|+. |+.++++
T Consensus        84 ~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~a~~-~~~~i~~  157 (165)
T 3twr_A           84 SYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN--RDGNTPLDLVKD-GDTDIQD  157 (165)
T ss_dssp             HTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCTGGGSCT-TCHHHHH
T ss_pred             HcCcHHHHHHHHhC---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC--CCCCChhHhHhc-CChHHHH
Confidence            99999999999944   44567789999999999999999999999999998876654  469999999776 9999999


Q ss_pred             HHhhcCC
Q 008977          287 RILSSCD  293 (547)
Q Consensus       287 ~Ll~~~~  293 (547)
                      +|++.++
T Consensus       158 ~L~~~gA  164 (165)
T 3twr_A          158 LLRGDAA  164 (165)
T ss_dssp             HHHTC--
T ss_pred             HHhhccc
Confidence            9998764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=3.2e-27  Score=222.24  Aligned_cols=209  Identities=21%  Similarity=0.196  Sum_probs=142.1

Q ss_pred             ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977          128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY  207 (547)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~  207 (547)
                      +..|.||||.|++.|+.++++.|+++|.+++.  +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            34699999999999999999999999999873  4778999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHH--HHcCCHHHH
Q 008977          208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLA--AASGHIMVV  285 (547)
Q Consensus       208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v  285 (547)
                      .|+.+++++|+.+   +..++.+|..|+||||+|+..|+.+++++|+++|++.+....+ .+.||||+|  +..|+.+++
T Consensus        80 ~g~~~~v~~Ll~~---ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           80 AGHTEIVKFLVQF---GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS-DMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HTCHHHHHHHHHH---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS-SCCCHHHHCCSSSTTCCCHH
T ss_pred             cCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCC-CCcchHHHHHHhhhccHHHH
Confidence            9999999999943   4557788999999999999999999999999999988766544 345999999  788999999


Q ss_pred             HHHhhcCCCccc--------cccCCCCcHHHHHHHhcCcccccceeeecccccccc------cccccccCCCchhHHHH
Q 008977          286 DRILSSCDGCCA--------KVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSR------LLIAEDVNGNTPLHVVA  350 (547)
Q Consensus       286 ~~Ll~~~~~~~~--------~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~------~~~~~d~~G~T~Lh~A~  350 (547)
                      ++|++.+++...        ..|..++++++++...|+..       . .+.+.+.      .....+..|.+|.++..
T Consensus       156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i-------~-vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~  226 (239)
T 1ycs_B          156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCM-------T-IIHREDEDEIEWWWARLNDKEGYVPRNLLG  226 (239)
T ss_dssp             HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEE-------E-ECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred             HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCCEE-------E-EEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence            999998766422        12667889999888877621       1 1111111      12345677888877643

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=1.2e-25  Score=201.62  Aligned_cols=164  Identities=13%  Similarity=0.147  Sum_probs=146.8

Q ss_pred             cCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhc
Q 008977          129 EEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYT  208 (547)
Q Consensus       129 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~  208 (547)
                      .++.++||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            46789999999999999999999986665558899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHH
Q 008977          209 YPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRI  288 (547)
Q Consensus       209 ~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  288 (547)
                      ++.+++++|+++   +..++.+|..|.||||+|+..|+.+++++|+++|++++..+  ..|.||||+|+..++.+++++|
T Consensus        83 ~~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~tpl~~A~~~~~~~~~~~L  157 (179)
T 3f6q_A           83 GHRDIVQKLLQY---KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN--KYGEMPVDKAKAPLRELLRERA  157 (179)
T ss_dssp             TCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCC--TTSCCGGGGSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhc--cCCCCcHHHHHHHHHHHHHHHH
Confidence            999999999954   44567789999999999999999999999999998876654  4699999999999999999999


Q ss_pred             hhcCCCccc
Q 008977          289 LSSCDGCCA  297 (547)
Q Consensus       289 l~~~~~~~~  297 (547)
                      ++.+++...
T Consensus       158 ~~~g~~~~~  166 (179)
T 3f6q_A          158 EKMGQNLNR  166 (179)
T ss_dssp             HHTTCCCSC
T ss_pred             HHhhcCccc
Confidence            999988744

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.4e-25  Score=194.69  Aligned_cols=154  Identities=25%  Similarity=0.271  Sum_probs=136.8

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC
Q 008977          131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP  210 (547)
Q Consensus       131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~  210 (547)
                      |.||||.|+..|+.+++++|++.........+..|.||||+ +..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            46899999999999999999998322334788999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhh
Q 008977          211 TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS  290 (547)
Q Consensus       211 ~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  290 (547)
                      .+++++|++++   ..++.+|..|+||||+|+..|+.+++++|+++ .+.+..  +..|.||||+|+..|+.+++++|++
T Consensus        81 ~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~--~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           81 LDTLKVLVEHG---ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR--DARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTT---CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCC--CTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHHcC---CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            99999999443   44667889999999999999999999999998 665544  4469999999999999999999987


Q ss_pred             c
Q 008977          291 S  291 (547)
Q Consensus       291 ~  291 (547)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=6.5e-26  Score=213.30  Aligned_cols=126  Identities=20%  Similarity=0.117  Sum_probs=58.9

Q ss_pred             CCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcC
Q 008977          130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTY  209 (547)
Q Consensus       130 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~  209 (547)
                      .|.||||.|+..|+.+++++|++.|++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..+
T Consensus        36 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~  114 (239)
T 1ycs_B           36 LPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN  114 (239)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            34445555555555555555554444433 34444555555555555555555555555554444445555555555555


Q ss_pred             CHHHHHHHHcccccchhhhhhccCCC-cHHhHH--HhcCChHHHHHHhccCCC
Q 008977          210 PTEVIKQLFLHEEKRSLTAVRDKYGW-TPLHHA--AYSGRELTSKLLLDHDKS  259 (547)
Q Consensus       210 ~~~~v~~Ll~~~~~~~~~~~~d~~g~-tpLh~A--~~~g~~~~v~~Ll~~~~~  259 (547)
                      +.+++++|++++   ..++.++..|. ||||+|  +..|+.+++++|++++++
T Consensus       115 ~~~~v~~Ll~~g---a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~  164 (239)
T 1ycs_B          115 NVQVCKFLVESG---AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK  164 (239)
T ss_dssp             CHHHHHHHHHTT---CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcC---CCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhc
Confidence            555555554222   22233333333 555544  444445555555544443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=2.4e-24  Score=183.73  Aligned_cols=131  Identities=16%  Similarity=0.170  Sum_probs=110.8

Q ss_pred             CccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHH
Q 008977           72 PSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILI  151 (547)
Q Consensus        72 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll  151 (547)
                      +..++..|..|.||||+|+..|+.+++++|++++.+                ++.++..|.||||+|+. |+.+++++|+
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll   64 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD----------------PNALNRFGRRPIQVMMM-GSAQVAELLL   64 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTCCTTTTTSTT-SCHHHHHHHH
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC----------------cCCcCCCCCCHHHHHHc-CCHHHHHHHH
Confidence            345677888889999999999999999999988765                56678888999999999 9999999999


Q ss_pred             hhCCCCCCCCCCC-CCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcc
Q 008977          152 VADPHVPYSANRN-NETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH  220 (547)
Q Consensus       152 ~~~~~~~~~~~~~-g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  220 (547)
                      ++|++++ ..+.. |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++
T Consensus        65 ~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           65 LHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             HHTCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HCCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9888876 66777 88999999999999999999999888888888888888888888888888888843

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=7.3e-24  Score=185.30  Aligned_cols=142  Identities=16%  Similarity=0.127  Sum_probs=88.4

Q ss_pred             ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCC
Q 008977           77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPH  156 (547)
Q Consensus        77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  156 (547)
                      ..+..|.||||+|+..|+.++|++|++++.+                ++.++..|.||||+|+ .|+.+++++|+++|++
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~   69 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGAN----------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE   69 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC----------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC
Confidence            3456677777777777777777777776654                4556677777777764 6777777777777776


Q ss_pred             CCCCCCCCCCc-HHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCC
Q 008977          157 VPYSANRNNET-PLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGW  235 (547)
Q Consensus       157 ~~~~~~~~g~t-pL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~  235 (547)
                      ++ ..+..|.| |||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++   +...+.++..|.
T Consensus        70 ~~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~  145 (156)
T 1bi7_B           70 PN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA---AGGTRGSNHARI  145 (156)
T ss_dssp             CC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC---C-----------
T ss_pred             CC-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc---CCCCCccCcCcC
Confidence            65 56666776 77777777777777777777777777777777777777777777777777633   333455566666


Q ss_pred             cHHh
Q 008977          236 TPLH  239 (547)
Q Consensus       236 tpLh  239 (547)
                      ||.+
T Consensus       146 t~~~  149 (156)
T 1bi7_B          146 DAAE  149 (156)
T ss_dssp             ----
T ss_pred             cccc
Confidence            6655

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=1.4e-23  Score=178.82  Aligned_cols=130  Identities=18%  Similarity=0.222  Sum_probs=96.3

Q ss_pred             hcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCC-CchHH
Q 008977          124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-GKTAL  202 (547)
Q Consensus       124 l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~-g~t~L  202 (547)
                      ++.++..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+. |+.+++++|+++|++++..+.. |.|||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            55677788888888888888888888888887766 667788888888888 8888888888888887777777 77777


Q ss_pred             HHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCC
Q 008977          203 HAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDK  258 (547)
Q Consensus       203 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~  258 (547)
                      |+|+..++.+++++|++++   ..++.+|..|+||||+|+..++.+++++|+++|+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAG---ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTC---CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            7777777777777777332   3345556667777777777777777777766654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=1.2e-23  Score=189.08  Aligned_cols=142  Identities=22%  Similarity=0.203  Sum_probs=125.9

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977           78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV  157 (547)
Q Consensus        78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  157 (547)
                      .+..|.||||+|+..|+.+++++|++ +.+                ++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~----------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  102 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRD----------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL  102 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            46789999999999999999999998 554                5678999999999999999999999999999998


Q ss_pred             CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                      +...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++                    ...+.+|
T Consensus       103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~--------------------~~~~~~~  162 (183)
T 3deo_A          103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK--------------------TTPKGNP  162 (183)
T ss_dssp             TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH--------------------TCCCCSH
T ss_pred             CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc--------------------CcccccH
Confidence            85545899999999999999999999999999999999999999999986321                    2456788


Q ss_pred             HhHHHhcCChHHHHHHhcc
Q 008977          238 LHHAAYSGRELTSKLLLDH  256 (547)
Q Consensus       238 Lh~A~~~g~~~~v~~Ll~~  256 (547)
                      |++|+..|..+++++|.++
T Consensus       163 l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          163 MQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCHHHHHHHHHHh
Confidence            9999999988888888765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=2e-23  Score=196.77  Aligned_cols=163  Identities=20%  Similarity=0.165  Sum_probs=129.6

Q ss_pred             eeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhc
Q 008977           46 HLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLG  125 (547)
Q Consensus        46 h~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~  125 (547)
                      .+++..  |+.+.  +..+..    .   ....+..|.||||+|++.|+.++|++|++ +.+                ++
T Consensus        20 l~~~~~--g~~~~--~~~~~~----~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~----------------~~   71 (244)
T 3ui2_A           20 LIEWKD--GHSPS--WVPSSY----I---AADVVSEYETPWWTAARKADEQALSQLLE-DRD----------------VD   71 (244)
T ss_dssp             EEEESS--CCCCE--EEEGGG----S---CHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC----------------TT
T ss_pred             HHHHHc--CCCcc--cccccc----c---ccccccCCCCHHHHHHHcCCHHHHHHHHc-CCC----------------CC
Confidence            788777  88777  544422    1   12345689999999999999999999999 654                66


Q ss_pred             ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977          126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA  205 (547)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A  205 (547)
                      .+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus        72 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A  151 (244)
T 3ui2_A           72 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA  151 (244)
T ss_dssp             CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            78999999999999999999999999999999855558899999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhcc
Q 008977          206 VYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH  256 (547)
Q Consensus       206 ~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  256 (547)
                      +..+                    ....+.||||+|+..|+.+++++|+++
T Consensus       152 ~~~~--------------------~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          152 REIL--------------------KTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHH--------------------TTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--------------------hccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            7411                    123445555555555555555555544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=8.6e-24  Score=189.99  Aligned_cols=153  Identities=16%  Similarity=0.157  Sum_probs=99.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccc-cCCCCHhHHHHHcCCH----HHHHHHHhhCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTN-EEQNTPLHEAVRLRSV----DVAKILIVADPH  156 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~----~iv~~Ll~~~~~  156 (547)
                      +.++|+.|++.|+.+.++.+++.+.+                  ..+ ..|.||||+|+..|+.    +++++|+++|++
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~------------------~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad   67 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE------------------DKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD   67 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS------------------CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc------------------cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC
Confidence            45678888888888888777765422                  223 5678888888887764    478888888887


Q ss_pred             CCCCCCCCCCcHHHHHHHCCC------HHHHHHHHHhCCCCCCCCCCCc-hHHHHHHhcCC-----HHHHHHHHcccccc
Q 008977          157 VPYSANRNNETPLYMAAANGS------VEIVAKILQKCPSPAHEGPDGK-TALHAAVYTYP-----TEVIKQLFLHEEKR  224 (547)
Q Consensus       157 ~~~~~~~~g~tpL~~A~~~g~------~~iv~~Ll~~~~~~~~~~~~g~-t~Lh~A~~~~~-----~~~v~~Ll~~~~~~  224 (547)
                      ++ .+|..|+||||+|+..|+      .+++++|+++|++++.+|..|. ||||+|+..+.     .+++++|+.  ..+
T Consensus        68 vn-~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~--~~g  144 (186)
T 3t8k_A           68 IK-SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS--QSG  144 (186)
T ss_dssp             SS-CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT--STT
T ss_pred             CC-CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH--hcC
Confidence            76 667788888888887775      4677777777777777777777 77777776332     234555552  122


Q ss_pred             hhhhhhccCCCcHHhHHHhcCChHHHHHHhc
Q 008977          225 SLTAVRDKYGWTPLHHAAYSGRELTSKLLLD  255 (547)
Q Consensus       225 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  255 (547)
                      ..++.+|..|+||||+|++.|+.+++++|.+
T Consensus       145 ad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          145 LQLLIKDKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             CCTTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3344445555555555555555555555544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=7.7e-23  Score=174.29  Aligned_cols=125  Identities=22%  Similarity=0.234  Sum_probs=106.2

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977           78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV  157 (547)
Q Consensus        78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  157 (547)
                      ....+.||||+|+..|+.+++++|++++.+                ++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   73 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGAD----------------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV   73 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            345578899999999999999999988766                5667888899999999999999999999988887


Q ss_pred             CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHc
Q 008977          158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFL  219 (547)
Q Consensus       158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  219 (547)
                      + ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++
T Consensus        74 ~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           74 N-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             T-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             C-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            6 677888999999999999999999999998888888888888888888888888888873

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=2.2e-22  Score=168.70  Aligned_cols=123  Identities=34%  Similarity=0.537  Sum_probs=102.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  160 (547)
                      +|+||||+|++.|+.+++++|++++.+                ++.++..|.||||+|+..|+.+++++|++.+++++ .
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~   63 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A   63 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC----------------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-c
Confidence            478888888888888888888887765                45567888888888888888888888888888776 6


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcc
Q 008977          161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH  220 (547)
Q Consensus       161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  220 (547)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++
T Consensus        64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            777888888888888888888888888888888888888888888888888888888743

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=3.6e-23  Score=180.84  Aligned_cols=143  Identities=19%  Similarity=0.194  Sum_probs=99.9

Q ss_pred             cccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCch-HHH
Q 008977          125 GMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKT-ALH  203 (547)
Q Consensus       125 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t-~Lh  203 (547)
                      +..++.|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+ .|+.+++++|+++|++++..+..|.| |||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            3457788899999999999999999998888876 67888889999885 88899999999988888888888887 888


Q ss_pred             HHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHH
Q 008977          204 AAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALH  274 (547)
Q Consensus       204 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~  274 (547)
                      +|+..++.+++++|+++   +..++.+|..|+||||+|+..|+.+++++|+++|++.+....  .|.||.+
T Consensus        84 ~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~--~g~t~~~  149 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH--ARIDAAE  149 (156)
T ss_dssp             HHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCc--CcCcccc
Confidence            88888888888888733   334556677777777777777777777777777766654432  3555554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=4.4e-23  Score=185.32  Aligned_cols=156  Identities=13%  Similarity=0.003  Sum_probs=134.6

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCH----HHHHHHHHhCCCCCCCCCCCchHHHHHH
Q 008977          131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSV----EIVAKILQKCPSPAHEGPDGKTALHAAV  206 (547)
Q Consensus       131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~----~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~  206 (547)
                      +.++|+.|++.|+.+.++.+++.+.+.  ..+..|.||||+|+..|+.    +++++|+++|++++.++..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            568999999999999999999988653  2236799999999999975    5999999999999999999999999999


Q ss_pred             hcCC------HHHHHHHHcccccchhhhhhccCCC-cHHhHHHhcCC-----hHHHHHHhc-cCCCcceecCCCCCchHH
Q 008977          207 YTYP------TEVIKQLFLHEEKRSLTAVRDKYGW-TPLHHAAYSGR-----ELTSKLLLD-HDKSAAFIGGKDRNMTAL  273 (547)
Q Consensus       207 ~~~~------~~~v~~Ll~~~~~~~~~~~~d~~g~-tpLh~A~~~g~-----~~~v~~Ll~-~~~~~~~~~~~~~g~tpL  273 (547)
                      ..++      .+++++|++   .+..++.+|..|+ ||||+|+..+.     .+++++|++ +|++++..+.  .|.|||
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~---~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~--~G~TpL  158 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLE---KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK--WGLTAL  158 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHH---TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT--TSCCHH
T ss_pred             HcCCcchhhHHHHHHHHHH---CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC--CCCCHH
Confidence            9887      578999994   4456778899999 99999999543     569999999 9988876644  599999


Q ss_pred             HHHHHcCCHHHHHHHhhcCC
Q 008977          274 HLAAASGHIMVVDRILSSCD  293 (547)
Q Consensus       274 ~~A~~~g~~~~v~~Ll~~~~  293 (547)
                      |+|++.|+.+++++|.+...
T Consensus       159 ~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999987643

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=8.2e-22  Score=165.20  Aligned_cols=125  Identities=36%  Similarity=0.481  Sum_probs=89.3

Q ss_pred             CCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcC
Q 008977          130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTY  209 (547)
Q Consensus       130 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~  209 (547)
                      +|.||||.|+..|+.+++++|++.+++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            37778888888888888888888777765 56777778888888888888888888877777777777777777777777


Q ss_pred             CHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCC
Q 008977          210 PTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDK  258 (547)
Q Consensus       210 ~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~  258 (547)
                      +.+++++|+++   +...+.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        80 ~~~~~~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           80 HLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            77777777633   23344556666666666666666666666666654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=1e-22  Score=173.79  Aligned_cols=125  Identities=25%  Similarity=0.311  Sum_probs=102.8

Q ss_pred             ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCC
Q 008977           77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPH  156 (547)
Q Consensus        77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  156 (547)
                      .+|.+|.||||+|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++++++
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~   68 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD----------------PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL   68 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Confidence            4677888888888888888888888887765                556788888888888888888888888888887


Q ss_pred             CCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHH
Q 008977          157 VPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLF  218 (547)
Q Consensus       157 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  218 (547)
                      ++ ..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|.
T Consensus        69 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           69 VN-TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             TT-CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             cc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence            76 67788888888888888888888888888888888888888888888777766666554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=4.5e-22  Score=169.51  Aligned_cols=126  Identities=27%  Similarity=0.359  Sum_probs=89.9

Q ss_pred             ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977          128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY  207 (547)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~  207 (547)
                      ...+.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            4456778888888888888888888777765 567777888888888888888888888877777777777777777777


Q ss_pred             cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccC
Q 008977          208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD  257 (547)
Q Consensus       208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~  257 (547)
                      .++.+++++|+++   +...+.+|..|+||||+|+..|+.+++++|++.|
T Consensus        90 ~~~~~~v~~Ll~~---g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKH---GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHc---CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            7777777777733   2334555666667777777766666666666553

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=9e-22  Score=164.46  Aligned_cols=112  Identities=27%  Similarity=0.365  Sum_probs=97.2

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC
Q 008977           79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP  158 (547)
Q Consensus        79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~  158 (547)
                      +..|+||||+|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++.|++++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   67 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED----------------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN   67 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC----------------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC----------------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            45678999999999999999999998765                56678889999999999999999999999998876


Q ss_pred             CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977          159 YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY  207 (547)
Q Consensus       159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~  207 (547)
                       ..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|..
T Consensus        68 -~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           68 -APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             -cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence             778889999999999999999999999999999999999999999843

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=1.2e-21  Score=175.95  Aligned_cols=140  Identities=24%  Similarity=0.224  Sum_probs=126.0

Q ss_pred             ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC-CCCchHHHHHH
Q 008977          128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG-PDGKTALHAAV  206 (547)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~-~~g~t~Lh~A~  206 (547)
                      +..|.||||.|+..|+.++++.|++ +.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            5678999999999999999999999 88776 789999999999999999999999999999999888 88999999999


Q ss_pred             hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHH
Q 008977          207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD  286 (547)
Q Consensus       207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  286 (547)
                      ..++.+++++|+++   +..++.+|..|+||||+|++.++.                   ..+.+||++|+..|+.++++
T Consensus       119 ~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~~~~~~i~~  176 (183)
T 3deo_A          119 GYVRPEVVEALVEL---GADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVIN  176 (183)
T ss_dssp             HTTCHHHHHHHHHH---TCCTTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHc---CCCCcCCCCCCCCHHHHHHHhccC-------------------cccccHHHHHHHcCHHHHHH
Confidence            99999999999944   445677899999999999985432                   24789999999999999999


Q ss_pred             HHhhc
Q 008977          287 RILSS  291 (547)
Q Consensus       287 ~Ll~~  291 (547)
                      .|.++
T Consensus       177 ~L~~~  181 (183)
T 3deo_A          177 VLEGQ  181 (183)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            99765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=3.1e-21  Score=187.24  Aligned_cols=148  Identities=18%  Similarity=0.069  Sum_probs=120.3

Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHc---CCHHHHHHHHhhCCC
Q 008977           80 AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL---RSVDVAKILIVADPH  156 (547)
Q Consensus        80 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~  156 (547)
                      ..+.++||.|+..|+.+.|+.|++.+.+......          -...+..|.||||+|+..   |+.+++++|+++|++
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~----------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad  218 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP----------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH  218 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE----------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCC----------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC
Confidence            3456789999999999999999998876321000          001588999999999997   899999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCc
Q 008977          157 VPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWT  236 (547)
Q Consensus       157 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~t  236 (547)
                      ++ ..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++++.         ..|.|
T Consensus       219 vn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga---------~~g~t  288 (301)
T 2b0o_E          219 LD-AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA---------GTFAF  288 (301)
T ss_dssp             TT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH---------HTTSS
T ss_pred             CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC---------CCCCC
Confidence            87 778999999999999999999999999999999999999999999999999999999994332         25889


Q ss_pred             HHhHHHhcCCh
Q 008977          237 PLHHAAYSGRE  247 (547)
Q Consensus       237 pLh~A~~~g~~  247 (547)
                      |||+|+..|+.
T Consensus       289 pLh~A~~~g~~  299 (301)
T 2b0o_E          289 PLHVDYSWVIS  299 (301)
T ss_dssp             CCC--------
T ss_pred             hhHHHHhcCCc
Confidence            99999988763

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=8.3e-22  Score=182.98  Aligned_cols=132  Identities=21%  Similarity=0.208  Sum_probs=105.5

Q ss_pred             cccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh-C
Q 008977           76 FQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA-D  154 (547)
Q Consensus        76 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-~  154 (547)
                      +..+.+|.||||+|+..|+.++|++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++. |
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g  130 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVG----------------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPN  130 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTT
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCC----------------ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCC
Confidence            34567788999999999999999999987765                566788899999999999999999999988 7


Q ss_pred             CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccc
Q 008977          155 PHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKR  224 (547)
Q Consensus       155 ~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  224 (547)
                      .+++ ..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.++++.|+..+...
T Consensus       131 ~~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          131 IELN-QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             CCCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             CCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            7766 77888899999999999999999999999988888888888888888888888888887544433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=1.5e-21  Score=183.96  Aligned_cols=143  Identities=23%  Similarity=0.207  Sum_probs=127.5

Q ss_pred             ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC-CCCchHHHHHH
Q 008977          128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG-PDGKTALHAAV  206 (547)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~-~~g~t~Lh~A~  206 (547)
                      +..|.||||+|+..|+.++++.|++ +.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4678999999999999999999999 88776 788999999999999999999999999999999888 78999999999


Q ss_pred             hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHH
Q 008977          207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD  286 (547)
Q Consensus       207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  286 (547)
                      ..|+.+++++|+++   +..++.+|..|+||||+|+..++.                   ..+.||||+|+..|+.++++
T Consensus       120 ~~g~~~~v~~Ll~~---ga~~~~~d~~g~t~l~~A~~~~~~-------------------~~~~~~l~~a~~~g~~~iv~  177 (244)
T 3ui2_A          120 GYVRPEVVEALVEL---GADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVIN  177 (244)
T ss_dssp             HTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHHTT-------------------CCCSSHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHC---CCCCCCCCCCCCcHHHHHHHHHhc-------------------cCCCCHHHHHHHcChHHHHH
Confidence            99999999999954   445677899999999999864321                   25889999999999999999


Q ss_pred             HHhhcCCC
Q 008977          287 RILSSCDG  294 (547)
Q Consensus       287 ~Ll~~~~~  294 (547)
                      +|++...+
T Consensus       178 ~L~~~~~~  185 (244)
T 3ui2_A          178 VLEGQVFE  185 (244)
T ss_dssp             HHHHHHEE
T ss_pred             HHHHhccc
Confidence            99986443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=1.6e-21  Score=166.27  Aligned_cols=128  Identities=19%  Similarity=0.204  Sum_probs=107.6

Q ss_pred             ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977          126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA  205 (547)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A  205 (547)
                      .+|..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDA   83 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHH
Confidence            458889999999999999999999999988876 7788899999999999999999999999999988888899999999


Q ss_pred             HhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccC
Q 008977          206 VYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD  257 (547)
Q Consensus       206 ~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~  257 (547)
                      +..++.+++++|+++   +...+.+|..|.||||+|+..+..+++++|.+.+
T Consensus        84 ~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            999999999999843   3446677888999999998888888877776654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=2.1e-20  Score=181.40  Aligned_cols=138  Identities=19%  Similarity=0.120  Sum_probs=79.9

Q ss_pred             CcHHHHHHHCCCHHHHHHHHHhCCCCCC------CCCCCchHHHHHHhc---CCHHHHHHHHcccccchhhhhhccCCCc
Q 008977          166 ETPLYMAAANGSVEIVAKILQKCPSPAH------EGPDGKTALHAAVYT---YPTEVIKQLFLHEEKRSLTAVRDKYGWT  236 (547)
Q Consensus       166 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~------~~~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~~~d~~g~t  236 (547)
                      .++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++|+++   +..++.+|.+|+|
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~---gadvn~~d~~G~T  228 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN---GGHLDAKAADGNT  228 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH---SSCTTCCCTTCCC
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc---CCCCCCCCCCCCC
Confidence            3556666666666666666666666555      455666666666664   566666666632   2334555666666


Q ss_pred             HHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcC
Q 008977          237 PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLD  315 (547)
Q Consensus       237 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  315 (547)
                      |||+|+..|+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|++.+++       .|+||||+|+..|.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d--~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALVGTVN--EAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCCSCCC--TTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence            6666666666666666666666554432  2466666666666666666666666554       35666666666554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=1.8e-20  Score=156.45  Aligned_cols=112  Identities=21%  Similarity=0.195  Sum_probs=83.6

Q ss_pred             ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977          128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY  207 (547)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~  207 (547)
                      +..|.||||+|+..|+.+++++|++.+++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            4567788888888888888888888887765 667778888888888888888888888888887777777888888887


Q ss_pred             cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977          208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY  243 (547)
Q Consensus       208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~  243 (547)
                      .++.+++++|+++   +...+.+|..|.||||+|..
T Consensus        83 ~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           83 EGHVSCVKLLLSK---GADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHCCC
T ss_pred             cCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHhCC
Confidence            7777777777743   33355667777777777743

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=1.7e-20  Score=174.18  Aligned_cols=134  Identities=20%  Similarity=0.222  Sum_probs=110.2

Q ss_pred             ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHh-CCCCCCCCCCCchHHHH
Q 008977          126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHA  204 (547)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~g~t~Lh~  204 (547)
                      ..+..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+..|+.+++++|++. |++++..|..|.||||+
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence            457889999999999999999999999999887 7789999999999999999999999998 99999999999999999


Q ss_pred             HHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCccee
Q 008977          205 AVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFI  263 (547)
Q Consensus       205 A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~  263 (547)
                      |+..|+.+++++|+++   +...+.+|..|.||||+|+..++.++++.|++.+......
T Consensus       147 A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~  202 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS  202 (222)
T ss_dssp             HHHHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred             HHHcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence            9999999999999943   4446677888999999999999999999998887765543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=6.2e-20  Score=182.10  Aligned_cols=146  Identities=17%  Similarity=0.176  Sum_probs=92.9

Q ss_pred             CCChHHHHHHHc-CCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccc--cCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977           81 KGDSPLHLAAKK-GDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTN--EEQNTPLHEAVRLRSVDVAKILIVADPHV  157 (547)
Q Consensus        81 ~g~t~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  157 (547)
                      .+.|+||.|+.. |+.++++.|++++++                ++..+  ..|.||||+|+..|+.+++++|+++|+++
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad----------------vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv  261 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGAD----------------VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV  261 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCC----------------TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCC----------------CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            455777777777 777777777777665                34444  67777777777777777777777777777


Q ss_pred             CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                      + ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+..+.........+..+.|+
T Consensus       262 n-~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~  340 (368)
T 3jue_A          262 N-QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETY  340 (368)
T ss_dssp             T-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------
T ss_pred             C-CCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCH
Confidence            6 667777777777777777777777777777777777777777777777777777777775443333333344555555


Q ss_pred             HhHHHh
Q 008977          238 LHHAAY  243 (547)
Q Consensus       238 Lh~A~~  243 (547)
                      ++.+..
T Consensus       341 l~i~~~  346 (368)
T 3jue_A          341 LDIFRD  346 (368)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            555443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.6e-19  Score=142.52  Aligned_cols=93  Identities=35%  Similarity=0.594  Sum_probs=74.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  160 (547)
                      +|+||||+|+..|+.+++++|++++.+                ++.+|..|.||||+|+..|+.+++++|+++|++++ .
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~   63 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A   63 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC----------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-c
Confidence            477888888888888888888887765                56677888888888888888888888888888776 6


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCC
Q 008977          161 ANRNNETPLYMAAANGSVEIVAKILQKCPS  190 (547)
Q Consensus       161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~  190 (547)
                      +|..|.||||+|+..|+.+++++|+++|++
T Consensus        64 ~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           64 KDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            777888888888888888888888887764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=1.6e-18  Score=166.07  Aligned_cols=123  Identities=19%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             cHHHHHHHCCCHHHHHHHHHhCCCCC------CCCCCCchHHHHHHhc---CCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          167 TPLYMAAANGSVEIVAKILQKCPSPA------HEGPDGKTALHAAVYT---YPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       167 tpL~~A~~~g~~~iv~~Ll~~~~~~~------~~~~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                      ++|+.|+..|+.+.++.+++.|++++      ..+..|.||||+|+..   ++.+++++|+++   +..++.+|..|+||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~---ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN---SGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH---CSCTTCCCTTCCCH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC---CCCccccCCCCCCH
Confidence            45555555555555555555555532      2245555666666655   555566655522   23344555566666


Q ss_pred             HhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCC
Q 008977          238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDG  294 (547)
Q Consensus       238 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  294 (547)
                      ||+|+..|+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|++++++
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d--~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIAN--ESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcc--CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            666666666666666666665554433  2466666666666666666666665543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=2.3e-19  Score=147.73  Aligned_cols=107  Identities=28%  Similarity=0.390  Sum_probs=68.8

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977           78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV  157 (547)
Q Consensus        78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  157 (547)
                      +|.+|.||||+|+..|+.+++++|++++.+                ++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~   68 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD----------------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV   68 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC----------------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            456666666666666666666666666544                4455666666666666666666666666666665


Q ss_pred             CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchH
Q 008977          158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTA  201 (547)
Q Consensus       158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~  201 (547)
                      + ..|..|.||||+|+..|+.+++++|+++|++++..+..|.+|
T Consensus        69 ~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           69 N-ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             T-CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             c-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            5 556666666666666666666666666666666665555554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.77  E-value=1.8e-18  Score=165.86  Aligned_cols=129  Identities=19%  Similarity=0.095  Sum_probs=115.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHc---CCHHHHHHHHhhCCCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL---RSVDVAKILIVADPHVP  158 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~  158 (547)
                      ..++|+.|+..|+.+.++.+++.+.+....          ..++..+..|.||||+|+..   |+.+++++|+++|++++
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~----------~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in  199 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEK----------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD  199 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSB----------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhh----------ccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc
Confidence            357999999999999999999988763211          11445588899999999999   89999999999999987


Q ss_pred             CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHccc
Q 008977          159 YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE  221 (547)
Q Consensus       159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~  221 (547)
                       ..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus       200 -~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          200 -KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             -CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence             78999999999999999999999999999999999999999999999999999999999544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=3e-18  Score=135.20  Aligned_cols=90  Identities=34%  Similarity=0.484  Sum_probs=75.8

Q ss_pred             CCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcC
Q 008977          130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTY  209 (547)
Q Consensus       130 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~  209 (547)
                      +|.||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            37888999998888999999888888876 67888888999998888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHcc
Q 008977          210 PTEVIKQLFLH  220 (547)
Q Consensus       210 ~~~~v~~Ll~~  220 (547)
                      +.+++++|+++
T Consensus        80 ~~~~~~~Ll~~   90 (93)
T 1n0q_A           80 HLEVVKLLLEA   90 (93)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHHHHHHHHHc
Confidence            88888888743

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=1.7e-18  Score=171.79  Aligned_cols=143  Identities=17%  Similarity=0.128  Sum_probs=60.4

Q ss_pred             CCcHHHHHHHC-CCHHHHHHHHHhCCCCCCCC--CCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHH
Q 008977          165 NETPLYMAAAN-GSVEIVAKILQKCPSPAHEG--PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA  241 (547)
Q Consensus       165 g~tpL~~A~~~-g~~~iv~~Ll~~~~~~~~~~--~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A  241 (547)
                      +.||||.|+.. |+.++++.|+++|++++..+  ..|.||||+|+..++.+++++|+++   +..++.+|..|+||||+|
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~---Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN---GANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHH
Confidence            34455555554 55555555555555554444  4455555555555555555555522   222334445555555555


Q ss_pred             HhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCc--cccccCCCCcHHHHHHH
Q 008977          242 AYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGC--CAKVDERGWNFLHFAMV  312 (547)
Q Consensus       242 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~  312 (547)
                      +..|+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|++.+...  ....+..+.|+++++..
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d--~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARD--SEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcC--CCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            55555555555555554443332  23555555555555555555555443221  11223444555555443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.73  E-value=8e-18  Score=138.45  Aligned_cols=108  Identities=28%  Similarity=0.310  Sum_probs=90.5

Q ss_pred             ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977          126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA  205 (547)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A  205 (547)
                      .+|..|.||||+|+..|+.+++++|++++++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            468889999999999999999999999988876 6788899999999999999999999999999888888888899988


Q ss_pred             HhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977          206 VYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP  237 (547)
Q Consensus       206 ~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp  237 (547)
                      +..++.+++++|+++   +..++.++..|.+|
T Consensus        83 ~~~~~~~~~~~Ll~~---ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAK---GADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTT---SSSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHc---CCCCCcCCcccccc
Confidence            888888888888843   34466677777776

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=1.3e-16  Score=130.08  Aligned_cols=94  Identities=21%  Similarity=0.309  Sum_probs=62.6

Q ss_pred             cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977           74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA  153 (547)
Q Consensus        74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~  153 (547)
                      .....|.+|.||||+|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|+++
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~   79 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD----------------VAAKDKNGSTPLHLAARNGHLEVVKLLLEA   79 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCC----------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3445666777777777777777777777776654                455667777777777777777777777777


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHH
Q 008977          154 DPHVPYSANRNNETPLYMAAANGSVEIVAKI  184 (547)
Q Consensus       154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L  184 (547)
                      |++++ ..|..|.||||+|+..|+.+++++|
T Consensus        80 ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           80 GADVX-AQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TCCTT-CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCcc-ccccCCCcHHHHHHHcCCHHHHHHh
Confidence            76665 5666777777777777777777665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.65  E-value=4.8e-16  Score=126.59  Aligned_cols=93  Identities=26%  Similarity=0.335  Sum_probs=82.5

Q ss_pred             hcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHH
Q 008977          124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALH  203 (547)
Q Consensus       124 l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh  203 (547)
                      ....+.+|.||||+|+..|+.+++++|++.+++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            45568889999999999999999999999999887 67889999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHH
Q 008977          204 AAVYTYPTEVIKQL  217 (547)
Q Consensus       204 ~A~~~~~~~~v~~L  217 (547)
                      +|+..++.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	547
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-28
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	7e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 6e-28
 Identities = 79/267 (29%), Positives = 117/267 (43%), Gaps = 31/267 (11%)

Query: 85  PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSV 144
           PLH+A+  G   IVK L          LQRG          ++N +  TPLH A R    
Sbjct: 3   PLHVASFMGHLPIVKNL----------LQRGAS------PNVSNVKVETPLHMAARAGHT 46

Query: 145 DVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHA 204
           +VAK L+     V  +  ++++TPL+ AA  G   +V  +L+   +P      G T LH 
Sbjct: 47  EVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 105

Query: 205 AVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIG 264
           A      E +       EK +  A   K G+TPLH AA  G+   ++LLL+ D   A   
Sbjct: 106 AAREGHVETVLA---LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD---AHPN 159

Query: 265 GKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLV 323
              +N +T LH+A    ++ +V ++L    G        G+  LH A     +  +  L+
Sbjct: 160 AAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 218

Query: 324 IKHPTVRNSRLLIAEDVNGNTPLHVVA 350
               +        AE V G TPLH+ A
Sbjct: 219 QYGGSAN------AESVQGVTPLHLAA 239

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-23
 Identities = 76/351 (21%), Positives = 126/351 (35%), Gaps = 82/351 (23%)

Query: 60  STKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSA 119
               V+++L    S     + K ++PLH+AA+ G   + K+L          LQ   K  
Sbjct: 12  HLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYL----------LQNKAK-- 58

Query: 120 ERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY-------------------- 159
               +    ++  TPLH A R+   ++ K+L+  + +                       
Sbjct: 59  ----VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET 114

Query: 160 ------------SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY 207
                          +   TPL++AA  G V +   +L++   P   G +G T LH AV+
Sbjct: 115 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH 174

Query: 208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKD 267
               +++K L     +          G+TPLH AA   +   ++ LL +  S        
Sbjct: 175 HNNLDIVKLLL---PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS--ANAESV 229

Query: 268 RNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVS-----LDLLQSSGL 322
           + +T LHLAA  GH  +V  +LS         ++ G   LH           D+L   G+
Sbjct: 230 QGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGV 288

Query: 323 VIKHPTVRNSRLLI----------------------AEDVNGNTPLHVVAA 351
           ++   T      L                       A+   G +PLH  A 
Sbjct: 289 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 339

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 5e-23
 Identities = 76/276 (27%), Positives = 114/276 (41%), Gaps = 37/276 (13%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
             KG +PLH+AAK G   + + L          L+R              +   TPLH A
Sbjct: 129 TKKGFTPLHVAAKYGKVRVAELL----------LERDAH------PNAAGKNGLTPLHVA 172

Query: 139 VRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
           V   ++D+ K+L+     PH P     N  TPL++AA    VE+   +LQ   S   E  
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSP---AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 229

Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
            G T LH A      E++  L   +   +L    +K G TPLH  A  G    + +L+ H
Sbjct: 230 QGVTPLHLAAQEGHAEMVALLLSKQANGNL---GNKSGLTPLHLVAQEGHVPVADVLIKH 286

Query: 257 DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMV--SL 314
                         T LH+A+  G+I +V  +L       AK  + G++ LH A      
Sbjct: 287 --GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHT 343

Query: 315 DLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
           D++    L++K+    N         +G TPL +  
Sbjct: 344 DIVT---LLLKNGASPN-----EVSSDGTTPLAIAK 371

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 7e-22
 Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 25/227 (11%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIK---------FAKKQPRDLQRGVKSAERQML---- 124
           A   G +PLH+A    +  IVK L+          +    P  +       E        
Sbjct: 161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 220

Query: 125 ----GMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
                  + +  TPLH A +    ++  +L+    +     N++  TPL++ A  G V +
Sbjct: 221 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPV 279

Query: 181 VAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHH 240
              +++           G T LH A +    +++K L  H+   +    + K G++PLH 
Sbjct: 280 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN---AKTKLGYSPLHQ 336

Query: 241 AAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVD 286
           AA  G      LLL +    A       +  T L +A   G+I V D
Sbjct: 337 AAQQGHTDIVTLLLKNG---ASPNEVSSDGTTPLAIAKRLGYISVTD 380

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 4e-17
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 20/194 (10%)

Query: 76  FQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPL 135
                +G +PLHLAA++G A +V  L+                  +    + N+   TPL
Sbjct: 225 NAESVQGVTPLHLAAQEGHAEMVALLLSK----------------QANGNLGNKSGLTPL 268

Query: 136 HEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
           H   +   V VA +LI     V  +  R   TPL++A+  G++++V  +LQ       + 
Sbjct: 269 HLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 327

Query: 196 PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLD 255
             G + LH A     T+++  L    +  +        G TPL  A   G    + +L  
Sbjct: 328 KLGYSPLHQAAQQGHTDIVTLLL---KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 384

Query: 256 HDKSAAFIGGKDRN 269
                +F+   D++
Sbjct: 385 VTDETSFVLVSDKH 398

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 2e-13
 Identities = 45/196 (22%), Positives = 73/196 (37%), Gaps = 25/196 (12%)

Query: 41  NITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKF 100
            +T  HL  Q    E+V++      +            +  G +PLHL A++G   +   
Sbjct: 231 GVTPLHLAAQEGHAEMVALLLSKQANG--------NLGNKSGLTPLHLVAQEGHVPVADV 282

Query: 101 LIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS 160
           LIK                   M+  T     TPLH A    ++ + K  ++       +
Sbjct: 283 LIK----------------HGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVNA 325

Query: 161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH 220
             +   +PL+ AA  G  +IV  +L+   SP     DG T L  A       V   L + 
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 385

Query: 221 EEKRSLTAVRDKYGWT 236
            ++ S   V DK+  +
Sbjct: 386 TDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 270 MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVS--LDLLQSSGLVIKHP 327
           +T LH+A+  GH+ +V  +L          + +    LH A  +   ++ +    ++++ 
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAK---YLLQNK 56

Query: 328 TVRNSRLLIAEDVNGNTPLHVVAAVCRLSH 357
              N     A+  +  TPLH  A +   + 
Sbjct: 57  AKVN-----AKAKDDQTPLHCAARIGHTNM 81

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 1e-20
 Identities = 49/258 (18%), Positives = 82/258 (31%), Gaps = 35/258 (13%)

Query: 64  VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLI-----------------KFAK 106
           V+ +L+   +V FQ +  G +PLH A +     IV+ L+                   A 
Sbjct: 21  VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80

Query: 107 KQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADP---------HV 157
                    +  ++   +   +    T   EA     V   K L                
Sbjct: 81  IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED 140

Query: 158 PYSANRNNETPLYMAAANGSVEIVAKILQKCP----SPAHEGPDGKTALHAAVYTYPTEV 213
                +   T L  AA  G VE++  +L +      +  + G +       +      E 
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 214 IKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTA 272
           I  L L  +  +   VR + G TPL  A         + LL+ +     I   D +  TA
Sbjct: 201 ITHLLL--DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH--IEINDTDSDGKTA 256

Query: 273 LHLAAASGHIMVVDRILS 290
           L LA       + + +  
Sbjct: 257 LLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 1e-20
 Identities = 58/282 (20%), Positives = 90/282 (31%), Gaps = 30/282 (10%)

Query: 78  ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
           A  + +  L  A +  D  +V+ L          L+ G     +       E   TPLH 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQL----------LEGGANVNFQ-----EEEGGWTPLHN 45

Query: 138 AVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD 197
           AV++   D+ ++L+                   +AA  GSV+++   L K          
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNECDFY 104

Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTA-------VRDKYGWTPLHHAAYSGRELTS 250
           G TA   A      + +K L+      +L            K G T L  AA  G     
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164

Query: 251 KLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMV--VDRILSSCDGCCAKVDERGWNFLH 308
           K+LLD   +             +H   +S    V  +  +L           ERG   L 
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224

Query: 309 FAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
            A+    L     L+ +     N       D +G T L +  
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDT-----DSDGKTALLLAV 261

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 9e-16
 Identities = 40/182 (21%), Positives = 66/182 (36%), Gaps = 12/182 (6%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
           D  G +    AA  G    +KFL K      R     ++   ++      +   T L +A
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYK------RGANVNLRRKTKEDQERLRKGGATALMDA 155

Query: 139 VRLRSVDVAKILIV---ADPHVPYSANRNNETPLYMAAANGSVEIVAKIL-QKCPSPAHE 194
                V+V KIL+    AD +   +  RN      +++ +  VE +  +L          
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
           G  GKT L  AV      ++++L     +       D  G T L  A     +  ++LL 
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 255 DH 256
             
Sbjct: 274 KR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 60  STKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIK 103
               V+ +L+     +   D+ G + L LA +     I + L K
Sbjct: 231 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 86.5 bits (213), Expect = 5e-19
 Identities = 37/280 (13%), Positives = 69/280 (24%), Gaps = 41/280 (14%)

Query: 75  LFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTP 134
             +   K +    +AA  G ++ +  L          L           + +   E    
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLCLL-------LTSDEI------VKVIQAENYQA 129

Query: 135 LHEAVRLRSVDVAKILIVADP-HVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH 193
              A     + V   L    P  +       N     +AA NG + ++ ++ +  P+ A 
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 194 ---EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTS 250
              +  +      AAV      VI  L                      H    G +  +
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDC----------PVMLAYAEIHEFEYGEKYVN 239

Query: 251 KLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFA 310
             +  H               A  L+   G   +V +                   L   
Sbjct: 240 PFIARHVN------RLKEMHDAFKLSNPDGVFDLVTKSE-------CLQGFYMLRNLIRR 286

Query: 311 MVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
                LL     ++  P ++          + N  L +  
Sbjct: 287 -NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 325

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 81.5 bits (200), Expect = 2e-17
 Identities = 31/239 (12%), Positives = 53/239 (22%), Gaps = 46/239 (19%)

Query: 77  QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
              A+      LAA+ G   ++  L + A                +++ M   E      
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAPT--------------EIMAMIQAENYHAFR 166

Query: 137 EAVRLRSVDVAKILI--VADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
            A     + V   L               N     + A   G   ++  +L         
Sbjct: 167 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC------- 219

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLH--------------------EEKRSLTAVRDKYG 234
                 A           V   +  H                    +       ++  Y 
Sbjct: 220 PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYM 279

Query: 235 WTPLHHAAYSGRELTSKLLLDH--DKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
              L            + LL     K+ A       +    L LA   G+      +LS
Sbjct: 280 LRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 69.9 bits (170), Expect = 1e-13
 Identities = 32/247 (12%), Positives = 67/247 (27%), Gaps = 14/247 (5%)

Query: 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHV----------PYSANRNNETPLYMAAANG- 176
           + ++   +          V ++L +   H            +     +E   ++AA  G 
Sbjct: 43  SYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGC 102

Query: 177 --SVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYG 234
             +++ +  +L           +   A   A       V+ +L        + A+     
Sbjct: 103 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL-CELAPTEIMAMIQAEN 161

Query: 235 WTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDG 294
           +     AA +G       L +   + A    +  N  A   AA       V   L  C  
Sbjct: 162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 221

Query: 295 CCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR 354
             A  +   + +    +        + L   H   + S      D+   +       + R
Sbjct: 222 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLR 281

Query: 355 LSHRVAG 361
              R   
Sbjct: 282 NLIRRND 288

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.5 bits (156), Expect = 8e-12
 Identities = 31/235 (13%), Positives = 64/235 (27%), Gaps = 24/235 (10%)

Query: 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK 187
           N E +  L     +   ++ +  I A+     + +      +++       + V ++L  
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQ-VRQLLCL 67

Query: 188 -----------CPSPAHE-GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGW 235
                        S AH+ G   +     A  T  +  +  L L      +  V     +
Sbjct: 68  YYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY 127

Query: 236 TPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGC 295
                AA +G       L +   +      +  N  A  LAA +GH+ V++R+       
Sbjct: 128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

Query: 296 CAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
              + +    +                            L+   V          
Sbjct: 188 ATAMIQAENYYAFRWAAV-----------GRGHHNVINFLLDCPVMLAYAEIHEF 231

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 14/158 (8%), Positives = 30/158 (18%), Gaps = 32/158 (20%)

Query: 75  LFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTP 134
           L               + G+  +  F+ +   +                     +E +  
Sbjct: 216 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR--------------------LKEMHDA 255

Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP----- 189
              +      D+                      L        ++ +  +L         
Sbjct: 256 FKLSNPDGVFDLVT-------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA 308

Query: 190 SPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLT 227
             A    D    L  A+          L       +LT
Sbjct: 309 PTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT 346

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 2e-18
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 25/227 (11%)

Query: 64  VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQM 123
           ++  +    S+  + D    + LH A   G   IV+FL++                    
Sbjct: 19  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL----------------GVP 62

Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
           +   ++   +PLH A      ++ K L+     V  + N+N  TPL+ AA+    EI   
Sbjct: 63  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY 243
           +L+   +P  +     TA+H A      ++I  L  ++     T ++D  G TPLH A  
Sbjct: 122 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS---TNIQDTEGNTPLHLACD 178

Query: 244 SGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRIL 289
             R   +KLL+      A I  +++   T L + A  G  +++ R++
Sbjct: 179 EERVEEAKLLVSQG---ASIYIENKEEKTPLQV-AKGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 3e-16
 Identities = 54/222 (24%), Positives = 87/222 (39%), Gaps = 18/222 (8%)

Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
           N  +        ++  K  I+AD  +    ++++ T L+ A + G  EIV  +LQ     
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
             +   G + LH A      E++K L       +     ++ G TPLH+AA   R   + 
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGK---GAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 252 LLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFA 310
           +LL+     A    KD    TA+H AAA G++ +   IL          D  G   LH A
Sbjct: 121 MLLEGG---ANPDAKDHYEATAMHRAAAKGNLKM-IHILLYYKASTNIQDTEGNTPLHLA 176

Query: 311 MV--SLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
                ++  +   L++             E+    TPL V  
Sbjct: 177 CDEERVEEAK---LLVSQGASIY-----IENKEEKTPLQVAK 210

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 8e-10
 Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 37/232 (15%)

Query: 5   LFEAAAKGDIEPFRE-IARDELESIVTDLMNNTVLY------------------GNITAS 45
           +   A  G +E  +E I  D+  +  TD  + T L+                    +   
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 46  HLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFA 105
                +      S     +   L    + +   +  G +PLH AA K    I   L    
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML---- 122

Query: 106 KKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNN 165
                 L+ G            +  + T +H A    ++ +  IL+          +   
Sbjct: 123 ------LEGGAN------PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEG 169

Query: 166 ETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQL 217
            TPL++A     VE    ++ +  S   E  + KT L  A       ++K++
Sbjct: 170 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGL-GLILKRM 220

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.2 bits (204), Expect = 3e-18
 Identities = 35/240 (14%), Positives = 77/240 (32%), Gaps = 8/240 (3%)

Query: 41  NITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKF 100
           N        Q +     S+  +  +   +   ++    D  G++PLH      +  +VK 
Sbjct: 66  NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKH 125

Query: 101 LIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY 159
           L+K  + +   D        +        +              + +   +     H  +
Sbjct: 126 LVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH--H 183

Query: 160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG-PDGKTALHAAVYTYPTEVIKQLF 218
               +  T    AA      ++  I++K   P   G  + ++  +         +++ L 
Sbjct: 184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 243

Query: 219 LHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAA 277
           L     ++   +D  G T L+ AA  G       LLD+    A     +++ +  +   A
Sbjct: 244 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG---ADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.2 bits (160), Expect = 1e-12
 Identities = 37/285 (12%), Positives = 84/285 (29%), Gaps = 29/285 (10%)

Query: 69  DLSPSVLFQADA--KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGM 126
           DL+   L       K      +   +    +  FL +    + +++   + +        
Sbjct: 9   DLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSE 68

Query: 127 TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQ 186
                    H +      +V         ++    + +  TPL+   +  ++E+V  +++
Sbjct: 69  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

Query: 187 KCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH-EEKRSLTAVRDKYGWTPLHHAAYSG 245
              +  +    G++ L  AV +             +       + D    T LHH   + 
Sbjct: 129 HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 188

Query: 246 RELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWN 305
                                   MT    AA     +++  I+   +           +
Sbjct: 189 -----------------------GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 306 FLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
             +             L +K      + +L A+D NG+T L++ A
Sbjct: 226 KPNDKNGERKDSILENLDLKW---IIANMLNAQDSNGDTCLNIAA 267

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 73.2 bits (178), Expect = 5e-15
 Identities = 47/252 (18%), Positives = 71/252 (28%), Gaps = 49/252 (19%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMT-------------- 127
             + LH  A    A   + LI    K+   +  G           T              
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKEC--IAAGADVNAMDCDENTPLMLAVLARRRRLV 90

Query: 128 -------------NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS-------------A 161
                        N+ + + LH+A   R   +   ++ +                     
Sbjct: 91  AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 150

Query: 162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE 221
             N       +A     +              E   G+TALH A       ++K L    
Sbjct: 151 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE- 209

Query: 222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASG 280
            K S    +D+ G TP+  AA  GR      L+      A +   D    TA  LA A+ 
Sbjct: 210 -KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG---ASVEAVDATDHTARQLAQANN 265

Query: 281 HIMVVDRILSSC 292
           H  +V  I   C
Sbjct: 266 HHNIV-DIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 68.2 bits (165), Expect = 3e-13
 Identities = 52/288 (18%), Positives = 102/288 (35%), Gaps = 44/288 (15%)

Query: 83  DSPLHLA-AKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
           +SP+ L     G  AI + + +            V   +            T LH     
Sbjct: 1   ESPIKLHTEAAGSYAITEPITR----------ESVNIID-------PRHNRTVLHWIASN 43

Query: 142 RSVDVAKILIVADPHVPYSA-------NRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
            S + ++ LIV +     +A       + +  TPL +A       +VA +++    P   
Sbjct: 44  SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 103

Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSG---RELTSK 251
               ++ALH A       ++  +    + +      D+ G T L   A++    +  ++K
Sbjct: 104 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 163

Query: 252 LLLDHDKSAAFIGGKDRN------MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWN 305
           LL++      + G   ++       TALH AA   ++ +V  ++        K DE G  
Sbjct: 164 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT 223

Query: 306 FLHFAMV--SLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAA 351
            +  A     ++++     +I+           A D   +T   +  A
Sbjct: 224 PIMLAAQEGRIEVVM---YLIQQGASVE-----AVDATDHTARQLAQA 263

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 34/202 (16%), Positives = 60/202 (29%), Gaps = 10/202 (4%)

Query: 166 ETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRS 225
           E+P+ +         + + + +      +    +T LH        E  + L +HE K  
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 226 LTA-----VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASG 280
           + A       D    TPL  A  + R      L+            +R+      A    
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 120

Query: 281 HIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVI-----KHPTVRNSRLL 335
            +MV     +   G   ++D  G   L     +    Q +   +            +   
Sbjct: 121 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 180

Query: 336 IAEDVNGNTPLHVVAAVCRLSH 357
            +E   G T LH  A V  +  
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPI 202

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (170), Expect = 2e-14
 Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 5/219 (2%)

Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
           N PLH+A         + L+ + P +    +++   PL+ + +  + EI + +L K  + 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
             +     +             ++ +    ++     +               G++    
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 252 LLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAM 311
                +  A+       N   LH AA+ G + +++ +           D++GW  L  A+
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 312 VSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
                  +  LV K+    +       D  G     V  
Sbjct: 181 AEGHGDAAVLLVEKYGAEYD-----LVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 17/230 (7%)

Query: 83  DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLR 142
           + PLH A  + +   V+ L+                ++  +L   +++   PLH +V  +
Sbjct: 1   NYPLHQACMENEFFKVQELLH---------------SKPSLLLQKDQDGRIPLHWSVSFQ 45

Query: 143 SVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC-PSPAHEGPDGKTA 201
           + ++   L+    +V      ++        A     +         P            
Sbjct: 46  AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG 105

Query: 202 LHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAA 261
           +         +  +      E  +   ++DK+   PLH AA  G     +LL    KSA 
Sbjct: 106 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 165

Query: 262 FIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAM 311
               K +  T L  A A GH      ++         VD +G      A+
Sbjct: 166 NWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 43/218 (19%), Positives = 68/218 (31%), Gaps = 17/218 (7%)

Query: 61  TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
              V+ +L   PS+L Q D  G  PLH +       I  FL+   +    D         
Sbjct: 13  FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT 72

Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
              +  +            R                          T L++A      E+
Sbjct: 73  PFHIACSVGNLEVVKSLYDR------------PLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 181 VAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHH 240
              +++   S   +    +  LH A      ++I+ L    +       +DK GWTPL H
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA--VNWQDKQGWTPLFH 178

Query: 241 AAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAA 277
           A   G    + LL+  +K  A     D     A  +A 
Sbjct: 179 ALAEGHGDAAVLLV--EKYGAEYDLVDNKGAKAEDVAL 214

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 3e-14
 Identities = 55/272 (20%), Positives = 82/272 (30%), Gaps = 69/272 (25%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
              GD+ LHLA        + FL+               SA  + L + N+   T LH A
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLG-------------FSAGHEYLDLQNDLGQTALHLA 52

Query: 139 VRL---------------------------------RSVDVAKILI---------VADPH 156
             L                                 R+   A +L+          +D +
Sbjct: 53  AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112

Query: 157 VPYSANRNNETPLYMAA----ANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTE 212
           +  S +   +T    AA     N   E   +          E  DG T LH AV     E
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172

Query: 213 VIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MT 271
           +++   L +    L       G TPLH A  +      +LLL      A    +     T
Sbjct: 173 MVR--LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG---ADPTARMYGGRT 227

Query: 272 ALHLAAASGHIMVVDRILSSCDGCCAKVDERG 303
            L  A    + ++   + +   G  A   E G
Sbjct: 228 PLGSALLRPNPILARLLRAH--G--APEPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.7 bits (169), Expect = 6e-14
 Identities = 43/237 (18%), Positives = 64/237 (27%), Gaps = 15/237 (6%)

Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILI--VADPHVPYSANRNNETPLYMAAANGSVEIV 181
            G   E+ +T LH AV  +       L+   A        N   +T L++AA  G    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 182 AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE-------EKRSLTAVRDKYG 234
            K+             G TALH A           L               LT  +D   
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 235 WTPLHHAAYSGRELTSKLLLDHDKSA-AFIGGKDRNMTALHLAAASGHIMVVDRILSSCD 293
            T    AA   +          D+     +  ++ +       A       + R+L    
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 294 GCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
               K +           V         L++K      +R        G TPL    
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR-----MYGGRTPLGSAL 233

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 26/134 (19%), Positives = 44/134 (32%), Gaps = 8/134 (5%)

Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRIL 289
            + G T LH A     E     LL       ++  ++    TALHLAA  G    V+++ 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL- 64

Query: 290 SSCDGCCAKVDERGWNFLHFAMVS-----LDLLQSSGLVIKHPTVRNSRLLIAEDVNGNT 344
            +        +  G   LH A          +L             ++ L  ++D   +T
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR-PSHPRDASDTYLTQSQDCTPDT 123

Query: 345 PLHVVAAVCRLSHR 358
                A   + +  
Sbjct: 124 SHAPAAVDSQPNPE 137

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 6e-08
 Identities = 34/232 (14%), Positives = 60/232 (25%), Gaps = 40/232 (17%)

Query: 60  STKFVEHILDL--SPSVLFQADAKGDSPLHLAAKKGDA---------------------- 95
              F++ +L        L   +  G + LHLAA  G+A                      
Sbjct: 21  HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT 80

Query: 96  -----------AIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSV 144
                           L++     PRD      +  +     T+        ++      
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA--PAAVDSQPNPEN 138

Query: 145 DVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHA 204
           +           +       +           +  +             E   G+T LH 
Sbjct: 139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198

Query: 205 AVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
           AV      V++ L    +  +    R   G TPL  A      + ++LL  H
Sbjct: 199 AVEAQAASVLELLL---KAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 69.0 bits (167), Expect = 5e-14
 Identities = 43/212 (20%), Positives = 71/212 (33%), Gaps = 22/212 (10%)

Query: 60  STKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSA 119
           + + +  +L     +    D  G++ LHLAA+   A   K L+            G    
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 120 ERQML------------------GMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA 161
              +                        +  TPL  A RL    + + LI AD  +  +A
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAA 119

Query: 162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE 221
           + + +T L+ AAA  + E V  +L    +   +    +T L  A      E  K L  + 
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
             R    + D     P   A+        +LL
Sbjct: 180 ANRE---ITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 43/209 (20%), Positives = 70/209 (33%), Gaps = 13/209 (6%)

Query: 143 SVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTAL 202
           +  V   L+     +  + ++  ET L++AA     +   K L    + A+   +     
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAA-KRLLDAGADANSQDNTGRTP 59

Query: 203 HAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAF 262
             A        + Q+     + +    R   G TPL  AA    E   + L+  D   A 
Sbjct: 60  LHAAVAADAMGVFQIL-LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD---AD 115

Query: 263 IGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSG 321
           I   D +  TALH AAA  +   V+ +L       A+ D++    L  A        S  
Sbjct: 116 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEASKA 174

Query: 322 LVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
           L+               D     P  V +
Sbjct: 175 LLDNFANRE------ITDHMDRLPRDVAS 197

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 3e-13
 Identities = 41/214 (19%), Positives = 62/214 (28%), Gaps = 54/214 (25%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR- 140
           GDS LHLA    + A+   +I+  K     L               N  Q TPLH AV  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN------------FQNNLQQTPLHLAVIT 49

Query: 141 -------------------------------------LRSVDVAKILIVADPHVPYSANR 163
                                                   V            +  + N 
Sbjct: 50  NQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 109

Query: 164 NNETPLYMAAANGSVEIVAK-ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEE 222
           N  T L++A+ +G + IV   +       A E  +G+TALH AV     +++  L     
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 169

Query: 223 KRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
             +        G++P             + L   
Sbjct: 170 DVNR---VTYQGYSPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 2e-08
 Identities = 40/238 (16%), Positives = 81/238 (34%), Gaps = 27/238 (11%)

Query: 164 NNETPLYMAAANGSVEIVAKILQKCPS----PAHEGPDGKTALHAAVYTYPTEVIKQLFL 219
           + ++ L++A  +    +  +++++          +    +T LH AV T   E+ + L  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 220 HEEKRSLTAVRDKYGWTPLHHAAY-SGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAA 278
                 L   R              +   + ++        +          T LHLA+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 279 SGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAE 338
            G++ +V+ ++S      A+    G   LH A+   +    S L+     V         
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN------RV 174

Query: 339 DVNGNTPLHVVAAVCRLSHRVAGLPQEIQELSKNVGRGQYPNGILRVQKEKDSVDEEA 396
              G +P  +     R S R+       Q+L +          +  +Q   +S DEE+
Sbjct: 175 TYQGYSPYQL--TWGRPSTRIQ------QQLGQ--------LTLENLQMLPESEDEES 216

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
                  T LH AV L++ D+  +L+   AD +          +P  +     S  I  +
Sbjct: 140 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR---VTYQGYSPYQLTWGRPSTRIQQQ 196

Query: 184 ILQKCPSPAHEGPDGK 199
           + Q         P+ +
Sbjct: 197 LGQLTLENLQMLPESE 212

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 5e-13
 Identities = 50/240 (20%), Positives = 87/240 (36%), Gaps = 52/240 (21%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
           GD+PLH+A  +G+   V  L+   ++  R+L             + N  + TPLH AV  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD------------IYNNLRQTPLHLAVI- 49

Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK----CPSPAHEGPD 197
            ++     L+V     P + +R+ +T  ++A  + S   +  +L               D
Sbjct: 50  TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 109

Query: 198 GKTALHAAVYTYPTEVIKQLF-------------------------------LHEEKRSL 226
           G TALH AV T   E ++ L                                L  +  + 
Sbjct: 110 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 169

Query: 227 TAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVV 285
              +   G + LH A+  G     + L+      A    K+ +  T L +A +   I ++
Sbjct: 170 VNAQMYSGSSALHSASGRGLLPLVRTLVRSG---ADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 6e-11
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 22/231 (9%)

Query: 129 EEQNTPLHEAVRLRSVDVAKILIV------ADPHVPYSANRNNETPLYMAAANGSVEIVA 182
           E+ +TPLH AV   ++     L+        +  +    N   +TPL++A       +V 
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI---YNNLRQTPLHLAVITTLPSVVR 57

Query: 183 KILQKCPSPAHEGPDGKTALHAAVYTYPTEVIK-QLFLHEEKRSLTAVRDKYGWTPLHHA 241
            ++    SP      G+TA H A        ++  L            R+  G T LH A
Sbjct: 58  LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 117

Query: 242 AYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDE 301
             +  + T +LLL+    A       ++  +  + A   + + + ++L            
Sbjct: 118 VNTECQETVQLLLERG--ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 175

Query: 302 RGWNFLHFAMV--SLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
            G + LH A     L L++    +++     +      ++ + +TPL V  
Sbjct: 176 SGSSALHSASGRGLLPLVR---TLVRSGADSS-----LKNCHNDTPLMVAR 218

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 13/90 (14%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
           +  +   +PL  AV   S+ + ++L+        +   +  + L+ A+  G + +V  ++
Sbjct: 139 VDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 197

Query: 186 QKCPSPAHEGPDGKTALHAAVYTYPTEVIK 215
           +     + +     T L  A      ++++
Sbjct: 198 RSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 155 PHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVI 214
                   ++  T L++AAA G  E++  ++Q       +  DG T LHAA +    E  
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 215 KQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
           + L  +          +K G T    A         +L    +
Sbjct: 249 RILVENLCDME---AVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 48/300 (16%), Positives = 90/300 (30%), Gaps = 64/300 (21%)

Query: 86  LHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVD 145
           +  A +K +  + +++      +P  ++R               +       A      +
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTK--------VKFDDGAVFLAACSSGDTE 54

Query: 146 VAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALH 203
               L+   AD +    AN +  T L+ A  + +V++V  +++   +      +G   LH
Sbjct: 55  EVLRLLERGADINY---ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLH 111

Query: 204 AAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFI 263
           AA      ++ + L             +  G TPL  A     E   +  ++        
Sbjct: 112 AAASCGYLDIAEYLISQGAHVGA---VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168

Query: 264 GGKD-------------------------RNMTALHLAAASGHIMVVDRILSSCDGCCAK 298
             K+                            TALH+AAA G+  V+             
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL----LIQARYD 224

Query: 299 VD---ERGWNFLHFAMVS-----LDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
           V+     GW  LH A          +L  +   ++           A +  G T   V  
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME-----------AVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.0 bits (123), Expect = 6e-08
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVE 179
                  +   T LH A      +V K+LI    D ++      +  TPL+ AA  G  E
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD---YDGWTPLHAAAHWGKEE 246

Query: 180 IVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSL 226
               +++           G+TA   A      +++  L   ++K++L
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 20/70 (28%)

Query: 81  KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR 140
            G +PLH AA  G     + L+          +          +   N+   T    A  
Sbjct: 231 DGWTPLHAAAHWGKEEACRILV----------ENLCD------MEAVNKVGQTAFDVADE 274

Query: 141 LRSVDVAKIL 150
               D+   L
Sbjct: 275 ----DILGYL 280

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 7e-09
 Identities = 30/176 (17%), Positives = 47/176 (26%), Gaps = 21/176 (11%)

Query: 81  KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR 140
           +    L  AA +GD   V+ L+          +  V        G T  +       A+ 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLH---------RELVHPDALNRFGKTALQVMMFGSTAIA 51

Query: 141 LRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKT 200
           L  +       V D       +    T             +  +++           G  
Sbjct: 52  LELLKQGASPNVQDTSGTSPVHDAARTGFLD--------TLKVLVEHGADVNVPDGTGAL 103

Query: 201 ALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
            +H AV          +       S    RD  G TPL  A   G +    +L  H
Sbjct: 104 PIHLAVQEGH----TAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 9/160 (5%)

Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
              L  A     V   + L+  +   P + NR  +T L +     +   +  + Q     
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 62

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
             +                T  +  L +  E  +   V D  G  P+H A   G      
Sbjct: 63  VQDTSGT----SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV- 117

Query: 252 LLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILS 290
                  + + +  +D   +T L LA   G   +VD +  
Sbjct: 118 ---SFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLI 102
           DA+G +PL LA ++G   +V  L 
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQ 153

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (120), Expect = 3e-08
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 128 NEEQNTPLHEAVRLRSVDVAKILI-----VADPHVPYSANRNNETPLYMAAAN---GSVE 179
              +   L EAV+ R +            + +     + +  +ET L++A  +    S+ 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 180 IVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH 239
           IV  ++Q   +   +   G TALH   Y   T+  + L L    ++   + ++ G TPL 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALH---YCCLTDNAECLKLLLRGKASIEIANESGETPLD 119

Query: 240 HAAYSGRELTSKLLLDH 256
            A     E   +LL   
Sbjct: 120 IAKRLKHEHCEELLTQA 136

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 6e-07
 Identities = 32/167 (19%), Positives = 49/167 (29%), Gaps = 21/167 (12%)

Query: 80  AKGDSPLHL---AAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
           A   + LH    A K  D   +                GV   E+  L   +E   T LH
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQA----------YADGVDLTEKIPLANGHEPDETALH 50

Query: 137 EAVRLR---SVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
            AVR     S+ +   L+    +                +     + E +  +L+   S 
Sbjct: 51  LAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL---TDNAECLKLLLRGKASI 107

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL 238
                 G+T L  A         + L      R  + V  +Y W  L
Sbjct: 108 EIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 27/156 (17%), Positives = 45/156 (28%), Gaps = 10/156 (6%)

Query: 160 SANRNNETPLYMAAANGSVEIVAKILQK-----CPSPAHEGP-DGKTALHAAVYTYPTEV 213
           +        L  A     +  + +            P   G    +TALH AV +     
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 214 IKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTAL 273
           +  +    +       +   G T LH+   +      KLLL     A+     +   T L
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK--ASIEIANESGETPL 118

Query: 274 HLAAASGHIMVVDRILSSCDGCCAKVD--ERGWNFL 307
            +A    H    + +  +  G        E  W  L
Sbjct: 119 DIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 6/120 (5%)

Query: 197 DGKTALHA---AVYTYPTEVIKQLFLHE---EKRSLTAVRDKYGWTPLHHAAYSGRELTS 250
           D    LH+   AV T     + Q +       ++   A   +   T LH A  S    + 
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 251 KLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFA 310
            ++    +++  +  +    +               ++L          +E G   L  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (119), Expect = 4e-08
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 21/169 (12%)

Query: 85  PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSV 144
            L  AA+ G    V+ L          +  G        LG +                +
Sbjct: 5   KLLEAARAGQDDEVRIL----------MANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVL 53

Query: 145 DVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHA 204
                          +  + + TPL+MAA+ G   IV  +L+       +     TALH 
Sbjct: 54  LR-------AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHW 106

Query: 205 AVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
           A      EV++   L  +  +    + K+  T    +  +G E  +++L
Sbjct: 107 ATEHNHQEVVE---LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 9/156 (5%)

Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
              L EA R    D  +IL+      P++ +    +PL++AA  G       +L+   S 
Sbjct: 3   GKKLLEAARAGQDDEVRILM--ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
                  +T LH A       +++ L  H    +    +D    T LH A     +   +
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVN---AKDMLKMTALHWATEHNHQEVVE 117

Query: 252 LLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVD 286
           L     K  A +  + +   TA  ++  +G+  + +
Sbjct: 118 L---LIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 6e-08
 Identities = 25/173 (14%), Positives = 42/173 (24%), Gaps = 20/173 (11%)

Query: 84  SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS 143
           + L  AA +GD   +  L          LQ  V    +   G T  +     +  +  R 
Sbjct: 3   NELASAAARGDLEQLTSL----------LQNNVNVNAQNGFGRTALQVMKLGNPEIARRL 52

Query: 144 VDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALH 203
           +       + D       +                                  D +  L 
Sbjct: 53  LLRGANPDLKDRTGFAVIHDAARAGFLDTLQT----------LLEFQADVNIEDNEGNLP 102

Query: 204 AAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
             +      +    FL +   S    R+  G T    A   GR     L+  +
Sbjct: 103 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 79  DAKGDSPLHLAAKKGDAAIVKFLIK 103
           + KGD+   LA   G   +V  +  
Sbjct: 130 NHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 6/158 (3%)

Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
             L  A     ++    L+  + +V             M      +       +     A
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-----KLGNPEIARRLLLRGA 57

Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
           +     +T             +  L    E ++   + D  G  PLH AA  G     + 
Sbjct: 58  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 117

Query: 253 LLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS 290
           L+ H  S           TA  LA   G   VV  + +
Sbjct: 118 LVKHTASNVGHRNHK-GDTACDLARLYGRNEVVSLMQA 154

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 33/136 (24%), Positives = 44/136 (32%), Gaps = 21/136 (15%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
            D     A K GD   VK  +   +   R L+ G K           E     L      
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL----- 56

Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTA 201
                             + ++++ TPL  A   G V  V  +L K      +GPDG TA
Sbjct: 57  ------------KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 104

Query: 202 LHAAVYTYPTEVIKQL 217
           L A       + IK L
Sbjct: 105 LEATD----NQAIKAL 116

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (85), Expect = 7e-04
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
           +     A++   +D  K  + A              PL+ AA  G +EI+  +L K    
Sbjct: 3   DKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA 242
                   T L +AVY      +K L      +++   +   G T L    
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV---KGPDGLTALEATD 109

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-05
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 8/133 (6%)

Query: 129 EEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC 188
           E     L  A     V+  + L+ A  +     N  N                   L   
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANP----NAPNSYGRRPIQVMMMGSARVAELLLL 56

Query: 189 PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
                   D  T             +  L +     +   VRD +G  P+  A   G   
Sbjct: 57  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD 116

Query: 249 TSKLLLDHDKSAA 261
            ++ L     +AA
Sbjct: 117 VARYLR----AAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 3e-04
 Identities = 19/127 (14%), Positives = 32/127 (25%), Gaps = 5/127 (3%)

Query: 165 NETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKR 224
           +   L  AAA G VE V  +L+   +P      G+  +   +          L    E  
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 225 SLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMV 284
                             +    +               G        + LA   GH  V
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG-----RLPVDLAEELGHRDV 117

Query: 285 VDRILSS 291
              + ++
Sbjct: 118 ARYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 11/120 (9%), Positives = 26/120 (21%), Gaps = 17/120 (14%)

Query: 82  GDSPLHLAAKKGDAAIVKFLIK----------------FAKKQPRDLQRGVKSAERQMLG 125
               L  AA +G    V+ L++                            +         
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
             +    T               +++          +     P+ +A   G  ++  + L
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA-RYL 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	547
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.98
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.77

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-41  Score=342.70  Aligned_cols=325  Identities=24%  Similarity=0.305  Sum_probs=258.5

Q ss_pred             HHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCC
Q 008977            3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKG   82 (547)
Q Consensus         3 ~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g   82 (547)
                      +|||.||..|+.++|+.|+++|.+++..+..|+|||       |+|+..  |+.++  +++|++    .+..++.+|.+|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL-------~~A~~~--g~~~i--v~~Ll~----~gadi~~~~~~g   66 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL-------HMAARA--GHTEV--AKYLLQ----NKAKVNAKAKDD   66 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHH-------HHHHHH--TCHHH--HHHHHH----HTCCSSCCCTTS
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHH-------HHHHHc--CCHHH--HHHHHH----CcCCCCCCCCCC
Confidence            689999999999999999999999999999999999       999999  99999  999977    477889999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhh-----------------hhHHHHHhcccccCCCCHhHHHHHcCCHH
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGV-----------------KSAERQMLGMTNEEQNTPLHEAVRLRSVD  145 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~  145 (547)
                      .||||+|+..|+.+++++|++...+.........                 ...........+..+.++++.|+..++.+
T Consensus        67 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  146 (408)
T d1n11a_          67 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR  146 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHH
Confidence            9999999999999999999998765322111000                 00000113455667788888888888888


Q ss_pred             HHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCch-------------------------
Q 008977          146 VAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKT-------------------------  200 (547)
Q Consensus       146 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t-------------------------  200 (547)
                      +++.|++++.+++ ..+..|.+|||+|+..|+.+++++|+++|++++..+..|.|                         
T Consensus       147 ~v~~ll~~~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~  225 (408)
T d1n11a_         147 VAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN  225 (408)
T ss_dssp             HHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccccc
Confidence            8888888877765 56777888888888888888888888888777655555554                         


Q ss_pred             --------HHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchH
Q 008977          201 --------ALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTA  272 (547)
Q Consensus       201 --------~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tp  272 (547)
                              |||+|+..+..++++.+..   .....+..+..|.|||+.|+..++.+++++|+++|.+.+....  .+.||
T Consensus       226 ~~~~~~~t~l~~a~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~--~~~t~  300 (408)
T d1n11a_         226 AESVQGVTPLHLAAQEGHAEMVALLLS---KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR--MGYTP  300 (408)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHT---TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS--SCCCH
T ss_pred             ccCCCCCCHHHHHHHhCcHhHhhhhhc---cccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccc--ccccc
Confidence                    5555555555555555552   2233445678889999999999999999999999988766544  48899


Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHh
Q 008977          273 LHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV  352 (547)
Q Consensus       273 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~  352 (547)
                      ||.++..++.++++++++.+.+. +.+|.+|+||||+|++.|+.+      +...|++.|++++.+|.+|+||||+|++.
T Consensus       301 L~~~~~~~~~~~~~~ll~~g~~i-n~~d~~G~T~Lh~A~~~g~~~------iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         301 LHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTD------IVTLLLKNGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             HHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH------HHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             chhhcccCcceeeeeeccccccc-cccCCCCCCHHHHHHHcCCHH------HHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            99999999999999999998876 566999999999999999864      44667788999999999999999999998


Q ss_pred             hcc
Q 008977          353 CRL  355 (547)
Q Consensus       353 ~~~  355 (547)
                      ++.
T Consensus       374 ~~~  376 (408)
T d1n11a_         374 GYI  376 (408)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=299.10  Aligned_cols=285  Identities=24%  Similarity=0.267  Sum_probs=243.0

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhc-----------
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDL-----------   70 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~-----------   70 (547)
                      +++||.|++.|+.+++++|+++|++++..+.+|.|||       |+|+..  |+.++  +++|+.....           
T Consensus        34 ~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L-------~~A~~~--g~~~~--~~~Ll~~~~~~~~~~~~~~~~  102 (408)
T d1n11a_          34 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL-------HCAARI--GHTNM--VKLLLENNANPNLATTAGHTP  102 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH-------HHHHHH--TCHHH--HHHHHHHTCCTTCCCTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHH-------HHHHHc--CCHHH--HHHHHHhhhccccccccccch
Confidence            4689999999999999999999999999999999999       999999  99999  8888753111           


Q ss_pred             ------------------CCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCC
Q 008977           71 ------------------SPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN  132 (547)
Q Consensus        71 ------------------~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  132 (547)
                                        .+......+..+.++|+.|+..++.++++.|++++.+                ++..+..|.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~----------------~~~~~~~~~  166 (408)
T d1n11a_         103 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH----------------PNAAGKNGL  166 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCSSCC
T ss_pred             hhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC----------------CCcCCCcCc
Confidence                              1233345677888999999999999999999998766                455677888


Q ss_pred             CHhHHHHHcCCHHHHHHHHhhCCCCCC--------------------------------CCCCCCCcHHHHHHHCCCHHH
Q 008977          133 TPLHEAVRLRSVDVAKILIVADPHVPY--------------------------------SANRNNETPLYMAAANGSVEI  180 (547)
Q Consensus       133 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~--------------------------------~~~~~g~tpL~~A~~~g~~~i  180 (547)
                      +|||+|+..|+.+++++|+++|++++.                                ..+..+.|||++|+..++.++
T Consensus       167 ~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  246 (408)
T d1n11a_         167 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM  246 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhH
Confidence            888888888888888888887776541                                234567788888888899999


Q ss_pred             HHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCc
Q 008977          181 VAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSA  260 (547)
Q Consensus       181 v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  260 (547)
                      ++.+++.+...+..+..|.+|++.|+..++.+++++|++   .+...+..+..+.||||.++..++.++++.+++.|.+.
T Consensus       247 ~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~---~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~i  323 (408)
T d1n11a_         247 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK---HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV  323 (408)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH---HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred             hhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHH---CCCccccccccccccchhhcccCcceeeeeeccccccc
Confidence            999999988888899999999999999999999999994   34446677889999999999999999999999999887


Q ss_pred             ceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccc
Q 008977          261 AFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQS  319 (547)
Q Consensus       261 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~  319 (547)
                      +..+  .+|.||||+|+++|+.++|++|+++|++. +.+|.+|+||||+|++.|+.+.+
T Consensus       324 n~~d--~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~-n~~d~~G~t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         324 NAKT--KLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVT  379 (408)
T ss_dssp             TCCC--TTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             cccC--CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHH
Confidence            6654  46999999999999999999999999985 56799999999999999996544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-34  Score=271.78  Aligned_cols=235  Identities=22%  Similarity=0.204  Sum_probs=182.6

Q ss_pred             cccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCC
Q 008977           76 FQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADP  155 (547)
Q Consensus        76 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~  155 (547)
                      ...+.+|+||||+||+.|+.+++++|++++++..             .++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~-------------~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga   69 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE-------------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGA   69 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG-------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-------------cccCcCCCCCCccchHHhhcccccccccccccc
Confidence            4568899999999999999999999999987632             267789999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCC----------CCchHHHHHH---hcCCHHHHHHHHcccc
Q 008977          156 HVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP----------DGKTALHAAV---YTYPTEVIKQLFLHEE  222 (547)
Q Consensus       156 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~----------~g~t~Lh~A~---~~~~~~~v~~Ll~~~~  222 (547)
                      +++ ..|..|.||||+|+..|+.++++.|++.+........          ...+....+.   ..........+.  ..
T Consensus        70 ~i~-~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  146 (255)
T d1oy3d_          70 GVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD--ED  146 (255)
T ss_dssp             CSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------C--CC
T ss_pred             ccc-ccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHh--hh
Confidence            987 7899999999999999999999999987754322110          1111111111   111111111111  23


Q ss_pred             cchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCC
Q 008977          223 KRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDER  302 (547)
Q Consensus       223 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  302 (547)
                      .....+.+|.+|.||||+|+..++.+++++|++++.+...... ..|.||||+|++.|+.+++++|++++.+. +.+|.+
T Consensus       147 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-n~~d~~  224 (255)
T d1oy3d_         147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP-TCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYG  224 (255)
T ss_dssp             GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             cCcccccccccCcccccccccccccccccchhccccccccccc-ccccccccccccccHHHHHHHHHHCCCCC-CCCCCC
Confidence            3445677899999999999999999999999999887765433 47999999999999999999999998776 667999


Q ss_pred             CCcHHHHHHHhcCcccccceeeeccccccccc
Q 008977          303 GWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRL  334 (547)
Q Consensus       303 g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~  334 (547)
                      |+||||+|+..++.+      +..+|+++|++
T Consensus       225 g~t~L~~A~~~~~~~------i~~~Ll~~Ga~  250 (255)
T d1oy3d_         225 GRTPLGSALLRPNPI------LARLLRAHGAP  250 (255)
T ss_dssp             SCCHHHHHHTSSCHH------HHHHHHHTTCC
T ss_pred             CCCHHHHHHHCCCHH------HHHHHHHcCCC
Confidence            999999999999863      44667777874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-34  Score=264.22  Aligned_cols=215  Identities=25%  Similarity=0.327  Sum_probs=137.1

Q ss_pred             eeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhc
Q 008977           46 HLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLG  125 (547)
Q Consensus        46 h~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~  125 (547)
                      +.++..  |+.+.  ++.+   +...+..++.+|.+|+||||+||..|+.+++++|++.+..                ..
T Consensus         8 ~~~a~~--G~~~~--v~~~---l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~----------------~~   64 (223)
T d1uoha_           8 CNLAYS--GKLEE--LKES---ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----------------VN   64 (223)
T ss_dssp             HHHHHT--TCHHH--HHHH---HHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC----------------SC
T ss_pred             HHHHHh--CCHHH--HHHH---HHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc----------------cc
Confidence            556666  66555  5544   3335666666677777777777777777777766666544                22


Q ss_pred             ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977          126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA  205 (547)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A  205 (547)
                      ..+..+.++++.++..|+.+++++|++++++++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a  143 (223)
T d1uoha_          65 DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA  143 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccccccccccchhHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhh
Confidence            334556667777777777777777776666654 5566666777777777777777777776666666666666777777


Q ss_pred             HhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHH
Q 008977          206 VYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVV  285 (547)
Q Consensus       206 ~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  285 (547)
                      +..++.+++++|..   .+..++.+|.+|+||||.|++.|+.+++++|+++|++++..  +.+|+||||+| ++|+.+++
T Consensus       144 ~~~~~~~~~~~L~~---~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~--d~~g~tpl~~A-~~~~~~i~  217 (223)
T d1uoha_         144 AAKGNLKMIHILLY---YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE--NKEEKTPLQVA-KGGLGLIL  217 (223)
T ss_dssp             HHTTCHHHHHHHHH---TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC--CTTSCCHHHHC-CTTHHHHH
T ss_pred             hhcCCcchhhhhcc---ccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCC--CCCCCCHHHHH-HCCCHHHH
Confidence            77766666666662   22334556666677777777777777777777666665543  23466677665 35666666


Q ss_pred             HHHhh
Q 008977          286 DRILS  290 (547)
Q Consensus       286 ~~Ll~  290 (547)
                      ++|++
T Consensus       218 ~~Ll~  222 (223)
T d1uoha_         218 KRMVE  222 (223)
T ss_dssp             HHHHC
T ss_pred             hcccC
Confidence            66654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-33  Score=255.03  Aligned_cols=218  Identities=25%  Similarity=0.293  Sum_probs=197.1

Q ss_pred             CHHHHHHHHcCCchHHHHHhhh-hhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccccc
Q 008977            2 DRKLFEAAAKGDIEPFREIARD-ELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADA   80 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~-~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~   80 (547)
                      |..|+.+|++|+++.++.+++. +.+++.+|.+|+|||       |+|+..  |+.++  +++++.    .+......+.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpL-------h~Aa~~--g~~e~--~~~l~~----~~~~~~~~~~   68 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTAL-------HWACSA--GHTEI--VEFLLQ----LGVPVNDKDD   68 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHH-------HHHHHH--TCHHH--HHHHHH----HTCCSCCCCT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHH-------HHHHHh--hhhcc--cccccc----cccccccccc
Confidence            4568899999999999888766 678889999999999       999999  99999  999977    3445556677


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  160 (547)
                      .+.++++.|+..|+.+++++|++++.+                ++.+|..|.||||+|+..|+.+++++|+++|.+++ .
T Consensus        69 ~~~~~~~~~~~~~~~~i~~~Ll~~~~d----------------~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~-~  131 (223)
T d1uoha_          69 AGWSPLHIAASAGRDEIVKALLGKGAQ----------------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-A  131 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred             cccccccccccccccchhHHHhccCce----------------eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC-C
Confidence            889999999999999999999998865                56789999999999999999999999999999886 7


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhH
Q 008977          161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHH  240 (547)
Q Consensus       161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~  240 (547)
                      .+..|.||||+|+..++.+++++|++.+.+++..|..|.||||.|+..++.+++++|++.   +..++.+|.+|+||||+
T Consensus       132 ~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~---Gad~~~~d~~g~tpl~~  208 (223)
T d1uoha_         132 KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ---GASIYIENKEEKTPLQV  208 (223)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHH
T ss_pred             cCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHC---CCCCCCCCCCCCCHHHH
Confidence            889999999999999999999999999999999999999999999999999999999944   44577789999999998


Q ss_pred             HHhcCChHHHHHHhc
Q 008977          241 AAYSGRELTSKLLLD  255 (547)
Q Consensus       241 A~~~g~~~~v~~Ll~  255 (547)
                      | ..|+.++++.|++
T Consensus       209 A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         209 A-KGGLGLILKRMVE  222 (223)
T ss_dssp             C-CTTHHHHHHHHHC
T ss_pred             H-HCCCHHHHhcccC
Confidence            8 5799999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1e-32  Score=260.34  Aligned_cols=232  Identities=23%  Similarity=0.195  Sum_probs=179.9

Q ss_pred             ccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCc
Q 008977           31 DLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPR  110 (547)
Q Consensus        31 ~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~  110 (547)
                      +++|+|||       |+|+..  |+.++  +++|++ ...+...++.+|..|+||||+|+..|+.+++++|+++|++   
T Consensus         6 ~~~G~t~L-------h~A~~~--~~~~~--v~~Ll~-~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~---   70 (255)
T d1oy3d_           6 TEDGDTAL-------HLAVIH--QHEPF--LDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG---   70 (255)
T ss_dssp             CTTCCCHH-------HHHHHT--TCHHH--HHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---
T ss_pred             CcCCCCHH-------HHHHHc--CCHHH--HHHHHH-cCCCcccccCcCCCCCCccchHHhhccccccccccccccc---
Confidence            45888888       999999  99999  999987 3445667888999999999999999999999999999877   


Q ss_pred             hhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC---------CCCcHHHHHHHCC----C
Q 008977          111 DLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR---------NNETPLYMAAANG----S  177 (547)
Q Consensus       111 ~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~---------~g~tpL~~A~~~g----~  177 (547)
                                   ++.+|..|.||||+|+..|+.+++++|++.+.........         .+.+....+....    .
T Consensus        71 -------------i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
T d1oy3d_          71 -------------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE  137 (255)
T ss_dssp             -------------SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------
T ss_pred             -------------ccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchh
Confidence                         6778999999999999999999999999876543311110         1111111111111    1


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccC
Q 008977          178 VEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD  257 (547)
Q Consensus       178 ~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~  257 (547)
                      ..........+.+.+.++.+|.||||+|+..++.+++++|++.+.  ......+..|.||||+|++.|+.+++++|+++|
T Consensus       138 ~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g  215 (255)
T d1oy3d_         138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA--DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG  215 (255)
T ss_dssp             ------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC--CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHhhhcCcccccccccCcccccccccccccccccchhcccc--cccccccccccccccccccccHHHHHHHHHHCC
Confidence            112222233445667789999999999999999999999994433  333445788999999999999999999999999


Q ss_pred             CCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCC
Q 008977          258 KSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDG  294 (547)
Q Consensus       258 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  294 (547)
                      ++++..  +..|.||||+|+++|+.+++++|+++|++
T Consensus       216 adin~~--d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         216 ADPTAR--MYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCTTCC--CTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            887655  34699999999999999999999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.7e-32  Score=252.12  Aligned_cols=182  Identities=25%  Similarity=0.270  Sum_probs=83.2

Q ss_pred             cccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC--CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCC--CCCCCCch
Q 008977          125 GMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP--YSANRNNETPLYMAAANGSVEIVAKILQKCPSPA--HEGPDGKT  200 (547)
Q Consensus       125 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~--~~~~~g~t  200 (547)
                      +.+|.+|.||||+|+..|+.+++++|+++|++++  ...+..|.+|+|+++..+..++++.++..+...+  ..+..+.+
T Consensus        28 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d1ixva_          28 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT  107 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCC
T ss_pred             cccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444555555555555555555555555444432  1234444555555555555555555544443322  23334445


Q ss_pred             HHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcC
Q 008977          201 ALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASG  280 (547)
Q Consensus       201 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g  280 (547)
                      +++.++..++.++++.|+..   +.....+|..|+||||+|+..|+.++++.|++.+..... ..+..|.||||+|+++|
T Consensus       108 ~l~~~~~~~~~~~~~~l~~~---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in-~~d~~g~TpLh~A~~~~  183 (229)
T d1ixva_         108 CLHLAVGKKWFEVSQFLIEN---GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN-WQDKQGWTPLFHALAEG  183 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSC-CCCTTSCCHHHHHHHTT
T ss_pred             ccccccccchhhhhhhhhhh---cccccccCCCCCCccchhhhccccccccccccccccccc-ccccccCCchhhhcccc
Confidence            55555555555555554422   122233344455555555555555555555554432111 11223555555555555


Q ss_pred             CHHHHHHHhhc-CCCccccccCCCCcHHHHHH
Q 008977          281 HIMVVDRILSS-CDGCCAKVDERGWNFLHFAM  311 (547)
Q Consensus       281 ~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~  311 (547)
                      +.+++++|++. |.+. +.+|.+|+||||+|+
T Consensus       184 ~~~~v~~Ll~~~gad~-~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         184 HGDAAVLLVEKYGAEY-DLVDNKGAKAEDVAL  214 (229)
T ss_dssp             CHHHHHHHHHHHCCCS-CCCCTTSCCTGGGCS
T ss_pred             cHHHHHHHHHhcCCCC-CCcCCCCCCHHHHHh
Confidence            55555555543 3332 334555555555544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.4e-32  Score=262.59  Aligned_cols=247  Identities=20%  Similarity=0.216  Sum_probs=200.8

Q ss_pred             ChHHHHHHH-cCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccc-cCCCCHhHHHHHcCCHHHHHHHH--------h
Q 008977           83 DSPLHLAAK-KGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTN-EEQNTPLHEAVRLRSVDVAKILI--------V  152 (547)
Q Consensus        83 ~t~Lh~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~iv~~Ll--------~  152 (547)
                      +||||+|+. .|+.++++.|.+.+.+                  ..+ ++|+||||+|+..|+.++++.|+        +
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n------------------~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~   62 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVN------------------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA   62 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTT------------------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCC------------------cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHH
Confidence            489986665 5677777777665433                  333 56999999999999999887774        5


Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhcc
Q 008977          153 ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDK  232 (547)
Q Consensus       153 ~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~  232 (547)
                      .|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++.+|.|||+.|+..++.++++.+..........+..+.
T Consensus        63 ~Gadvn-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  141 (277)
T d2fo1e1          63 AGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  141 (277)
T ss_dssp             TCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             cCCCcc-ccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhccccccccccccc
Confidence            688887 7899999999999999999999999999999999999999999999999999999999865555556667788


Q ss_pred             CCCcHHhHHHhcCChH---HHHHHhccCCCcc------eecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCC
Q 008977          233 YGWTPLHHAAYSGREL---TSKLLLDHDKSAA------FIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERG  303 (547)
Q Consensus       233 ~g~tpLh~A~~~g~~~---~v~~Ll~~~~~~~------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  303 (547)
                      .+.++.+.+...+..+   .+..+.+......      ....+..|.||||.++..++.++++.++...+...+..|..|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g  221 (277)
T d2fo1e1         142 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  221 (277)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             ccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCC
Confidence            8999999999887644   3334433322111      112334689999999999999999998888777778889999


Q ss_pred             CcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhc
Q 008977          304 WNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR  354 (547)
Q Consensus       304 ~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~  354 (547)
                      +||||+|++.++.+      +...+++.|++++.+|.+|+||||+|++.++
T Consensus       222 ~tpL~~A~~~g~~~------iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         222 KTPIMLAAQEGRIE------VVMYLIQQGASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             CCHHHHHHHHTCHH------HHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHH------HHHHHHHCcCCCCCcCCCCCCHHHHHHHcCC
Confidence            99999999999864      3356678899999999999999999999854

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-31  Score=246.80  Aligned_cols=211  Identities=21%  Similarity=0.192  Sum_probs=184.5

Q ss_pred             CCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCC---CCCCCchHHHHHHhc
Q 008977          132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH---EGPDGKTALHAAVYT  208 (547)
Q Consensus       132 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~---~~~~g~t~Lh~A~~~  208 (547)
                      +||||+||..|+.++++.|++.++.....+|.+|.||||+|+..|+.+++++|+++|++++.   .+..|.+|+|++...
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            58999999999999999999987766678999999999999999999999999999998864   567899999999999


Q ss_pred             CCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHH
Q 008977          209 YPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRI  288 (547)
Q Consensus       209 ~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  288 (547)
                      +..++++.++..+... .....+..+.||++.++..++.++++.|++.+......  +..|+||||+|+..|+.++++.|
T Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKP-DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK--DKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             TCHHHHHHHHSSSSCC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccc-cccccccccccccccccccchhhhhhhhhhhccccccc--CCCCCCccchhhhcccccccccc
Confidence            9999999988544332 24456788999999999999999999999998776554  34699999999999999999999


Q ss_pred             hhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccc-cccccccccccCCCchhHHHHH
Q 008977          289 LSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTV-RNSRLLIAEDVNGNTPLHVVAA  351 (547)
Q Consensus       289 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~-~~~~~~~~~d~~G~T~Lh~A~~  351 (547)
                      ++.++...+.+|.+|+||||+|+..++.+.      ...++ +.|++++.+|.+|+||||+|+.
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~~~~~~~------v~~Ll~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDA------AVLLVEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHH------HHHHHHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             cccccccccccccccCCchhhhcccccHHH------HHHHHHhcCCCCCCcCCCCCCHHHHHhh
Confidence            999988888889999999999999998642      23444 4689999999999999999864

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5e-31  Score=252.84  Aligned_cols=260  Identities=22%  Similarity=0.213  Sum_probs=219.3

Q ss_pred             eeEeeecCCceecchhhHHHHHhhcCCcccccc-ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHh
Q 008977           46 HLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQA-DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQML  124 (547)
Q Consensus        46 h~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l  124 (547)
                      |.|++.  |+.++  +++|++    .+.+++.+ +..|+||||+|+..|+.+++++|++.+..                .
T Consensus        10 ~~Ai~~--~~~e~--vk~Ll~----~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~----------------~   65 (285)
T d1wdya_          10 IKAVQN--EDVDL--VQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD----------------P   65 (285)
T ss_dssp             HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------T
T ss_pred             HHHHHc--CCHHH--HHHHHH----CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc----------------c
Confidence            999999  99999  999976    56767654 45799999999999999999999998765                3


Q ss_pred             cccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCC----------C
Q 008977          125 GMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH----------E  194 (547)
Q Consensus       125 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~----------~  194 (547)
                      ...+..+.+|.+.|+..+..+.....++...+.. ..+..+.++++.|+..|+...++.+++...+.+.          .
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (285)
T d1wdya_          66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL  144 (285)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHT
T ss_pred             cccccccchhhHHHhhcCCccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhh
Confidence            4567788999999999999999999999876654 5678899999999999999999999998776654          3


Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcC----ChHHHHHHhccCCCcceecCCCCCc
Q 008977          195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSG----RELTSKLLLDHDKSAAFIGGKDRNM  270 (547)
Q Consensus       195 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g----~~~~v~~Ll~~~~~~~~~~~~~~g~  270 (547)
                      +..|.||||+|+++++.+++++|+  ...+..++..+..|.++++.+...+    ..+++++|+++|++.+..  +..|.
T Consensus       145 ~~~g~t~L~~A~~~~~~~~~~~Ll--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~--~~~g~  220 (285)
T d1wdya_         145 RKGGATALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR--GERGK  220 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHH--HTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC--CTTSC
T ss_pred             cccCchHHHHHHHcCCHHHHHHHH--hccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCcc--CCCCC
Confidence            456899999999999999999999  3445567788889999888765543    357899999999887654  34699


Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeeccccccccccccccc
Q 008977          271 TALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDV  340 (547)
Q Consensus       271 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~  340 (547)
                      ||||.|++.|+.+++++|++.++..++.+|.+|+||||+|++.++.+      +...|++.|+++|++|.
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~e------iv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK------IAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH------HHHHHHHHSSCSCCSSC
T ss_pred             CccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHH------HHHHHHHCCCCCCcccC
Confidence            99999999999999999998766556778999999999999999864      44678899999999884

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.1e-31  Score=254.36  Aligned_cols=257  Identities=23%  Similarity=0.225  Sum_probs=203.3

Q ss_pred             CHHHHHHHHcCCc-hHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHh----hcCCcccc
Q 008977            2 DRKLFEAAAKGDI-EPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHIL----DLSPSVLF   76 (547)
Q Consensus         2 ~~~L~~A~~~g~~-~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~----~~~~~~~~   76 (547)
                      ++||+.|++.+.. ++.+.|.+.+++....+ +|+|||       |+|+..  |+.++  +++|+...    -..|.+++
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~~~-~g~T~L-------h~A~~~--g~~~~--v~~Ll~~~~~~~l~~Gadvn   68 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIIDPR-HNRTVL-------HWIASN--SSAEK--SEDLIVHEAKECIAAGADVN   68 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCCCS-SCCCHH-------HHHHCT--TCCSC--CTTHHHHHHHHHHHTCCCTT
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCCCC-CCccHH-------HHHHHc--CCHHH--HHHHHhcchhHHHHcCCCcc
Confidence            3567755554444 44544555566654333 688888       999999  99999  99987542    23578899


Q ss_pred             ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCC-
Q 008977           77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADP-  155 (547)
Q Consensus        77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~-  155 (547)
                      .+|.+|+||||+|++.|+.++|++|+++|++                ++.++.+|.|||++|+..++.++++.+..... 
T Consensus        69 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad----------------~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~  132 (277)
T d2fo1e1          69 AMDCDENTPLMLAVLARRRRLVAYLMKAGAD----------------PTIYNKSERSALHQAAANRDFGMMVYMLNSTKL  132 (277)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----------------SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHH
T ss_pred             ccCCCCCeeeccccccccccccccccccccc----------------cccccccccccccchhhhcchhhhhhhhhcccc
Confidence            9999999999999999999999999999887                56779999999999999999999999887532 


Q ss_pred             -CCCCCCCCCCCcHHHHHHHCCCHH---HHHHHHHhCCC--------CCCCCCCCchHHHHHHhcCCHHHHHHHHccccc
Q 008977          156 -HVPYSANRNNETPLYMAAANGSVE---IVAKILQKCPS--------PAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEK  223 (547)
Q Consensus       156 -~~~~~~~~~g~tpL~~A~~~g~~~---iv~~Ll~~~~~--------~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~  223 (547)
                       ......+..+.++.+.+...+..+   .+..+.+....        .+..+..|.||||.++..++.++++.++  ...
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l--~~~  210 (277)
T d2fo1e1         133 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV--GEK  210 (277)
T ss_dssp             HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH--HHS
T ss_pred             cccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccc--ccc
Confidence             112256778899999999877644   44444444322        2335677999999999999999998877  445


Q ss_pred             chhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhh
Q 008977          224 RSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS  290 (547)
Q Consensus       224 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  290 (547)
                      +...+.+|..|+||||+|++.|+.+++++|+++|++++..  +.+|.||||+|+++|+.++|++|++
T Consensus       211 ~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~--d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV--DATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC--CSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            5666778999999999999999999999999999887654  3469999999999999999998875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=3.4e-31  Score=255.02  Aligned_cols=238  Identities=20%  Similarity=0.165  Sum_probs=168.5

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC
Q 008977           79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP  158 (547)
Q Consensus        79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~  158 (547)
                      +..+.||||.||..|+.++|++||++|++                ++.+|.+|.||||+|+..|+.+++++|++++++..
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gad----------------vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~  100 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGAD----------------INYANVDGLTALHQACIDDNVDMVKFLVENGANIN  100 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCC----------------CCccCCCCCcHHHHHHhcCCceeeeeecccccccc
Confidence            34567999999999999999999999887                67789999999999999999999999999998875


Q ss_pred             CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHH
Q 008977          159 YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL  238 (547)
Q Consensus       159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpL  238 (547)
                       ..+..+.+||+.++..++.++++.|+++|...+..+..+.+++++|+..+..+.++.++..  .+.........+..+.
T Consensus       101 -~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~~~~~~  177 (291)
T d1s70b_         101 -QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR--QGVDIEAARKEEERIM  177 (291)
T ss_dssp             -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH--HTCCHHHHHHHHHHHH
T ss_pred             -cccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccc--cccccccccccccccc
Confidence             6788899999999999999999999999999999999999999999999999999888732  2111111111111111


Q ss_pred             hHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCccc
Q 008977          239 HHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQ  318 (547)
Q Consensus       239 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  318 (547)
                      +       ......+......  ....+..|.||||.|+..|+.++++.|++.++++ +.+|.+|+||||+|++.|+.+ 
T Consensus       178 ~-------~~~~~~~~~~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~-  246 (291)
T d1s70b_         178 L-------RDARQWLNSGHIN--DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEE-  246 (291)
T ss_dssp             H-------HHHHHHHHHTCCC--CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHH-
T ss_pred             c-------ccchhhhcccccc--cccccCCCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHH-
Confidence            1       1111111111111  1112234666666666666666666666666554 344666666666666666642 


Q ss_pred             ccceeeecccccccccccccccCCCchhHHHHH
Q 008977          319 SSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAA  351 (547)
Q Consensus       319 ~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~  351 (547)
                           +..+|+++|++++.+|.+|+||||+|++
T Consensus       247 -----iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         247 -----ACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             -----HHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             -----HHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence                 2244555666666666666666666655

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.2e-30  Score=244.66  Aligned_cols=259  Identities=19%  Similarity=0.164  Sum_probs=219.3

Q ss_pred             CHHHHHHHHcCCchHHHHHhhhhhhhhhcc-cCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccccc
Q 008977            2 DRKLFEAAAKGDIEPFREIARDELESIVTD-LMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADA   80 (547)
Q Consensus         2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~-~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~   80 (547)
                      ++.|+.|+++|++++++.|+++|++++..+ ..|.|||       |+|+..  |+.++  +++|++    .+......+.
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL-------~~A~~~--~~~ei--v~~L~~----~~~~~~~~~~   70 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-------HNAVQM--SREDI--VELLLR----HGADPVLRKK   70 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHH-------HHHHHc--CCHHH--hhhhcc----cccccccccc
Confidence            367999999999999999999999998665 4688888       999999  99999  999966    5566677788


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC-
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY-  159 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~-  159 (547)
                      .+.+|.+.|+..+..+....+++...+                ....+..+.++++.|+..|+...++.++....+... 
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  134 (285)
T d1wdya_          71 NGATPFLLAAIAGSVKLLKLFLSKGAD----------------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR  134 (285)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccchhhHHHhhcCCccccchhhhhccc----------------ccccccCCCchhHHHHHhcchhhhhhhhhhccccccc
Confidence            899999999999999999999987554                223577899999999999999999999987665442 


Q ss_pred             --------CCCCCCCcHHHHHHHCCCHHHHHHHHHh-CCCCCCCCCCCchHHHHHHhc----CCHHHHHHHHcccccchh
Q 008977          160 --------SANRNNETPLYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYT----YPTEVIKQLFLHEEKRSL  226 (547)
Q Consensus       160 --------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~g~t~Lh~A~~~----~~~~~v~~Ll~~~~~~~~  226 (547)
                              ..+..|.||||+|+.+|+.+++++|+++ |++++..+..|.++++.+...    +..+++++|+++   +..
T Consensus       135 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~---ga~  211 (285)
T d1wdya_         135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GAD  211 (285)
T ss_dssp             CCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT---TCC
T ss_pred             ccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC---CCC
Confidence                    2345689999999999999999999975 789999999999888776553    345788999844   334


Q ss_pred             hhhhccCCCcHHhHHHhcCChHHHHHHhcc-CCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCcc
Q 008977          227 TAVRDKYGWTPLHHAAYSGRELTSKLLLDH-DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCC  296 (547)
Q Consensus       227 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  296 (547)
                      .+.+|..|.||||.|++.|+.+++++|+++ |.+++..  +.+|.||||+|+++|+.|++++|+++|++.+
T Consensus       212 ~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~--d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT--DSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            667899999999999999999999999985 6666544  4469999999999999999999999999863

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=4.6e-30  Score=247.01  Aligned_cols=230  Identities=16%  Similarity=0.088  Sum_probs=175.4

Q ss_pred             cCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhc
Q 008977          129 EEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYT  208 (547)
Q Consensus       129 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~  208 (547)
                      .++.|||+.||..|+.++|++|+++|++++ ..|.+|.||||+|+..|+.+++++|++++++....+..+.+||+.++..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn-~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            446699999999999999999999999987 7899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCC-CcceecCCCCCchHHHHHHHcCCHHHHHH
Q 008977          209 YPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDK-SAAFIGGKDRNMTALHLAAASGHIMVVDR  287 (547)
Q Consensus       209 ~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  287 (547)
                      ++.++++.|+.++   ......|..+.+|+++|+..+..+.++.+++... +......  .+..+.       ..... .
T Consensus       117 ~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~--~~~~~~-------~~~~~-~  183 (291)
T d1s70b_         117 GYLDIAEYLISQG---AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK--EEERIM-------LRDAR-Q  183 (291)
T ss_dssp             TCHHHHHHHHHTT---CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHH--HHHHHH-------HHHHH-H
T ss_pred             cccchhhcccccC---cccccccccCccccccccccccchhccccccccccccccccc--cccccc-------cccch-h
Confidence            9999999999544   3355678999999999999999999999986532 1111100  011111       11222 2


Q ss_pred             HhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhcccccCCCCcHHHH
Q 008977          288 ILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQ  367 (547)
Q Consensus       288 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~  367 (547)
                      .+..........+..|.||||+|+..++.+      +...+++.+++++.+|.+|+||||+|++.++....     +...
T Consensus       184 ~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~------~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv-----~lLl  252 (291)
T d1s70b_         184 WLNSGHINDVRHAKSGGTALHVAAAKGYTE------VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC-----RILV  252 (291)
T ss_dssp             HHHHTCCCCCCCTTTCCCHHHHHHHHTCHH------HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH-----HHHH
T ss_pred             hhcccccccccccCCCCChhhHHHHcCChh------hhcccccceecccccccCCCCHHHHHHHcCCHHHH-----HHHH
Confidence            233333334556889999999999999853      34556678999999999999999999999876432     1111


Q ss_pred             H----HHHhhcCCCCCCcch
Q 008977          368 E----LSKNVGRGQYPNGIL  383 (547)
Q Consensus       368 ~----~~~~~~~~~~p~~~~  383 (547)
                      +    .......|.+|.++.
T Consensus       253 ~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         253 ENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             HTTCCTTCCCTTSCCTTTSC
T ss_pred             HCCCCCCCcCCCCCCHHHHH
Confidence            1    112234567887765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=226.54  Aligned_cols=219  Identities=27%  Similarity=0.308  Sum_probs=182.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  160 (547)
                      +|+||||+||..|+.++|+.|++.......            .++.+|..|.||||+|+..|+.+++++|++++++.+ .
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~------------~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~   68 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGR------------ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-A   68 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTC------------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCC------------CCCccCCCCCccceehhccccccccccccccccccc-c
Confidence            699999999999999999999875432111            167789999999999999999999999999998876 6


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCC----CCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCc
Q 008977          161 ANRNNETPLYMAAANGSVEIVAKILQKCPS----PAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWT  236 (547)
Q Consensus       161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~----~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~t  236 (547)
                      .+..+.++++.|...++.++++.+......    .+.......++|+.+.........+.|.  ..........+..|.+
T Consensus        69 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~  146 (228)
T d1k1aa_          69 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL--ERGADIDAVDIKSGRS  146 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH--HTTCCTTCCCTTTCCC
T ss_pred             cccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhh--ccccccccccccchhh
Confidence            778899999999999999999988876533    2335567789999999999888888887  3344444556778899


Q ss_pred             HHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCc
Q 008977          237 PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDL  316 (547)
Q Consensus       237 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  316 (547)
                      ||+.|+..+..++++.+++++......  +..|.||||+|+..|+.+++++|+++|++. +.+|.+|+||||+|+++++.
T Consensus       147 ~l~~a~~~~~~~~~~~~~~~~~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~-n~~d~~G~TpL~~A~~~~~~  223 (228)
T d1k1aa_         147 PLIHAVENNSLSMVQLLLQHGANVNAQ--MYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVI  223 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCB--CTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCTTTTCSSHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhhccccccc--cccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhCCCc
Confidence            999999999999999999988776554  346999999999999999999999998875 56799999999999988775


Q ss_pred             c
Q 008977          317 L  317 (547)
Q Consensus       317 ~  317 (547)
                      +
T Consensus       224 d  224 (228)
T d1k1aa_         224 D  224 (228)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-29  Score=232.55  Aligned_cols=198  Identities=24%  Similarity=0.239  Sum_probs=158.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977           81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  160 (547)
                      +|+||||+|+..|+.++++.|++......            ..++.+|.+|+||||+|+..|+.+++++|++.|++.. .
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~------------~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-~   67 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDL------------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-L   67 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----C------------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-C
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCC------------CCcccCCCCCCcccccccccccccccccccccccccc-c
Confidence            58999999999999766665554322111            1167789999999999999999999999999999886 7


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCC------CCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCC
Q 008977          161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAH------EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYG  234 (547)
Q Consensus       161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g  234 (547)
                      .|..|.|||++++..|+.++++.|++.+.....      ....|.||||.|+..++.+++++++.  .........+.+|
T Consensus        68 ~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~~G  145 (221)
T d1iknd_          68 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS--LGADVNAQEPCNG  145 (221)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTTC
T ss_pred             cccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecc--cCcccccccccCC
Confidence            889999999999999999999999998755432      44568899999999999999998883  3333333445679


Q ss_pred             CcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCc
Q 008977          235 WTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGC  295 (547)
Q Consensus       235 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  295 (547)
                      .||||+|++.|+.+++++|+++|++++..+  .+|+||||+|+..++.+++++|++...+.
T Consensus       146 ~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~--~~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         146 RTALHLAVDLQNPDLVSLLLKCGADVNRVT--YQGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCSCCCC--TTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             CCccccccccccHHHHHHHHhcCCcccccC--CCCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            999999999999999999999998876653  45999999999999999999998876553

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.9e-29  Score=228.18  Aligned_cols=195  Identities=20%  Similarity=0.161  Sum_probs=167.4

Q ss_pred             ccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHH
Q 008977           43 TASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ  122 (547)
Q Consensus        43 ~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  122 (547)
                      ||||+|+..  |+.++  ++.|++.+...+..++.+|.+|+||||+|+..|+.+++++|++.+++               
T Consensus         4 t~Lh~A~~~--g~~~~--~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d---------------   64 (221)
T d1iknd_           4 SFLHLAIIH--EEKAL--TMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD---------------   64 (221)
T ss_dssp             CTTHHHHHT--TCSSS--SSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC---------------
T ss_pred             hHHHHHHHc--CCHHH--HHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc---------------
Confidence            344999999  99888  88877766677888999999999999999999999999999998876               


Q ss_pred             HhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC-----CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC-C
Q 008977          123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP-----YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG-P  196 (547)
Q Consensus       123 ~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~-~  196 (547)
                       ++.+|..|.||||.|+..|+.++++.|++.+....     ......|.||||.|+..++.+++++|++.|+..+..+ .
T Consensus        65 -~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  143 (221)
T d1iknd_          65 -PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC  143 (221)
T ss_dssp             -SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             -ccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccccccc
Confidence             56779999999999999999999999998754432     2345578999999999999999999999999887754 5


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCc
Q 008977          197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSA  260 (547)
Q Consensus       197 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  260 (547)
                      +|.||||+|++.|+.+++++|++++   ..++.+|.+|+||||+|+..++.+++++|++...+.
T Consensus       144 ~G~T~L~~A~~~g~~~~v~~Ll~~g---ad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         144 NGRTALHLAVDLQNPDLVSLLLKCG---ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTT---CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             CCCCccccccccccHHHHHHHHhcC---CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            7999999999999999999999544   446778999999999999999999999999986553

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6e-28  Score=221.75  Aligned_cols=222  Identities=18%  Similarity=0.182  Sum_probs=192.8

Q ss_pred             CCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchh
Q 008977           33 MNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDL  112 (547)
Q Consensus        33 ~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~  112 (547)
                      +|+|||       |+|+..  |+.++  ++.|++.+...+.+++.+|..|+||||+|+..|+.+++++|++++++     
T Consensus         2 dG~TpL-------h~A~~~--g~~~~--v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-----   65 (228)
T d1k1aa_           2 DGDTPL-------HIAVVQ--GNLPA--VHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-----   65 (228)
T ss_dssp             TTCCHH-------HHHHHT--TCHHH--HHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred             CCccHH-------HHHHHc--CCHHH--HHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc-----
Confidence            577777       999999  99999  99999877778899999999999999999999999999999999876     


Q ss_pred             hhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC---CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCC
Q 008977          113 QRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV---PYSANRNNETPLYMAAANGSVEIVAKILQKCP  189 (547)
Q Consensus       113 ~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~---~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  189 (547)
                                 .+..+..|.++++.|...++.++++.+.......   .........+||+.+.........+.|.....
T Consensus        66 -----------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  134 (228)
T d1k1aa_          66 -----------PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA  134 (228)
T ss_dssp             -----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             -----------ccccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccc
Confidence                       4566888999999999999999999888754332   22345577899999999999999999998877


Q ss_pred             CCCC-CCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCC
Q 008977          190 SPAH-EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR  268 (547)
Q Consensus       190 ~~~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  268 (547)
                      +... ....+.++|+.|+..+..++++.++.   .+...+.+|..|.||||+|+..|+.+++++|+++|++++..+  .+
T Consensus       135 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d--~~  209 (228)
T d1k1aa_         135 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ---HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN--CH  209 (228)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH---TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC--TT
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhhhhhh---hccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCC--CC
Confidence            6543 56679999999999999999999994   344567789999999999999999999999999999887553  46


Q ss_pred             CchHHHHHHHcCCHHHHH
Q 008977          269 NMTALHLAAASGHIMVVD  286 (547)
Q Consensus       269 g~tpL~~A~~~g~~~~v~  286 (547)
                      |.||||+|+++|+.|+||
T Consensus       210 G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         210 NDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             SCCTTTTCSSHHHHHHHT
T ss_pred             CCCHHHHHHhCCCccccC
Confidence            999999999999999885

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=2.7e-27  Score=215.68  Aligned_cols=203  Identities=26%  Similarity=0.264  Sum_probs=128.8

Q ss_pred             hhHHHHHhhcCCccccc-cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHH
Q 008977           61 TKFVEHILDLSPSVLFQ-ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAV  139 (547)
Q Consensus        61 ~~~L~~~~~~~~~~~~~-~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~  139 (547)
                      |++|++    .+.+++. .|.+|.||||+||..|+.+++++|++.+++                ++.++..+.++++.++
T Consensus         5 v~~Ll~----~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~----------------~n~~~~~~~~~~~~~~   64 (209)
T d1ot8a_           5 ISDLLA----QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD----------------ANSQDNTGRTPLHAAV   64 (209)
T ss_dssp             HHHHHH----HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHH
T ss_pred             HHHHHH----CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc----------------cccccccccccccccc
Confidence            555544    3445544 466677777777777777777777766555                4455666667777777


Q ss_pred             HcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHc
Q 008977          140 RLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFL  219 (547)
Q Consensus       140 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  219 (547)
                      ..++.....................+.++.+.+.........+.|.+.+++++..+..|.|||+.++..+..++++.++.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~  144 (209)
T d1ot8a_          65 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM  144 (209)
T ss_dssp             HTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecc
Confidence            66666666665555444444455566666666666666666666666666666666666777777777676666666663


Q ss_pred             ccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHH
Q 008977          220 HEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRI  288 (547)
Q Consensus       220 ~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  288 (547)
                      .+   ...+.+|.+|.||||+|+..|+.++++.|+++|++++..+  ..|.||||+|+++|+.++|++|
T Consensus       145 ~~---~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d--~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         145 HH---ANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITD--HMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cc---ccccccccccccccchhccccHHHHHHHHHHCCCCCCCcC--CCCCCHHHHHHHcCCHHHHhhc
Confidence            22   2345556666777777777777777777777666655432  3466777777777777766654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.6e-26  Score=195.17  Aligned_cols=154  Identities=21%  Similarity=0.202  Sum_probs=84.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR  163 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  163 (547)
                      +|||+||..|+.++|+.|+++|++                ++.+|.+|.||||+|+ .|+.+++++|+++++++. ..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d----------------~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~   64 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN----------------VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDR   64 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC----------------TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC----------------cCccCCcccccccccc-cccccccccccccccccc-cccc
Confidence            455666666666666666655544                3445555566665553 455556666665555544 4455


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977          164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY  243 (547)
Q Consensus       164 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~  243 (547)
                      .+.+|++.++..++.+.++.|++.+.+.+..+..|.+|+|+|+..++.++++.|++  ..+...+.+|.+|+||||+|++
T Consensus        65 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~--~~~~~~~~~d~~g~TpL~~A~~  142 (156)
T d1ihba_          65 TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK--HTASNVGHRNHKGDTACDLARL  142 (156)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--HSCCCTTCCCTTSCCHHHHHHH
T ss_pred             cCcccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccCCCCCCHHHHHHH
Confidence            55556666555555555555555555555555555555555555555555555552  2222334445555555555555


Q ss_pred             cCChHHHHHHhccC
Q 008977          244 SGRELTSKLLLDHD  257 (547)
Q Consensus       244 ~g~~~~v~~Ll~~~  257 (547)
                      .++.+++++|+++|
T Consensus       143 ~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         143 YGRNEVVSLMQANG  156 (156)
T ss_dssp             TTCHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHhcC
Confidence            55555555555443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=1.6e-25  Score=203.78  Aligned_cols=206  Identities=22%  Similarity=0.214  Sum_probs=183.3

Q ss_pred             chHHHHHhhhhhhhhh-cccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHc
Q 008977           14 IEPFREIARDELESIV-TDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKK   92 (547)
Q Consensus        14 ~~~l~~ll~~~~~~~~-~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~   92 (547)
                      .|+|+.|+++|.|++. .|.+|+|||       |+||..  |+.++  +++|+.    .+..++.++..+.++++.++..
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L-------~~A~~~--g~~e~--v~~Ll~----~g~~~n~~~~~~~~~~~~~~~~   66 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSL-------HLAARF--ARADA--AKRLLD----AGADANSQDNTGRTPLHAAVAA   66 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHH-------HHHHHc--CCHHH--HHHHHh----hccccccccccccccccccccc
Confidence            4899999999999987 578999999       999999  99999  999977    6777888999999999999999


Q ss_pred             CCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHH
Q 008977           93 GDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMA  172 (547)
Q Consensus        93 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  172 (547)
                      ++.+............               .......|.++.+.+.........+.|.+.+.++. ..+..|.|||+.+
T Consensus        67 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~t~l~~~  130 (209)
T d1ot8a_          67 DAMGVFQILLRNRATN---------------LNARMHDGTTPLILAARLAIEGMVEDLITADADIN-AADNSGKTALHWA  130 (209)
T ss_dssp             TCHHHHHHHHTCTTCC---------------TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT-CBCTTSCBHHHHH
T ss_pred             cccccccccccccccc---------------cccccccccccccccccccchhhhhhhhhhccccc-ccCCCCCCcchhh
Confidence            9988877766543332               22345678899999999999999999999998876 6788999999999


Q ss_pred             HHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHH
Q 008977          173 AANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL  252 (547)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~  252 (547)
                      +..+..++++.+++.+.+++..|..|.||||+|+..|+.++++.|++++.   .++.+|..|+||||+|+++|+.++|++
T Consensus       131 ~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga---d~n~~d~~g~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         131 AAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA---NREITDHMDRLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHcCCHHHHhh
Confidence            99999999999999999999999999999999999999999999995443   466789999999999999999999997


Q ss_pred             H
Q 008977          253 L  253 (547)
Q Consensus       253 L  253 (547)
                      |
T Consensus       208 L  208 (209)
T d1ot8a_         208 L  208 (209)
T ss_dssp             H
T ss_pred             c
Confidence            6

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=1.3e-28  Score=242.09  Aligned_cols=237  Identities=16%  Similarity=0.065  Sum_probs=136.1

Q ss_pred             hcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcC
Q 008977           29 VTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQ  108 (547)
Q Consensus        29 ~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~  108 (547)
                      ..+..|+|+|       |+|+.+  |+.++  ++++.. +...+..++.+|.+|.||||+||+.||.++|++|+++|++.
T Consensus        85 ~~~~~~~t~L-------~~Aa~~--g~~~~--~~~~~~-L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~  152 (346)
T d2ajaa1          85 KKGIKSEVIC-------FVAAIT--GCSSA--LDTLCL-LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE  152 (346)
T ss_dssp             HHTCCHHHHH-------HHHHHH--CCHHH--HHHHTT-C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT
T ss_pred             hccCCCCcHH-------HHHHHh--CCHHH--HHHHHH-HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            3344555666       888888  77766  666433 33356677777777888888888888888888888776652


Q ss_pred             CchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC--CCCCCCCcHHHHHHHCCCHHHHHHHHH
Q 008977          109 PRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY--SANRNNETPLYMAAANGSVEIVAKILQ  186 (547)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~--~~~~~g~tpL~~A~~~g~~~iv~~Ll~  186 (547)
                      ..              ...+.+|.||||+|+..|+.+++++|++.|+....  ..+.++.||++.|+.+|+.+++++|++
T Consensus       153 ~~--------------~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~  218 (346)
T d2ajaa1         153 IM--------------AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD  218 (346)
T ss_dssp             HH--------------HHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             cc--------------cccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHh
Confidence            10              11234577888888888888888888877765421  223445667777777788888888887


Q ss_pred             hCCCCCC-------CCCCCchHHHHHHhcCCHHHHHHHHcccccch------hhhhhccCCCcHHhHHHhcCChHHHHHH
Q 008977          187 KCPSPAH-------EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRS------LTAVRDKYGWTPLHHAAYSGRELTSKLL  253 (547)
Q Consensus       187 ~~~~~~~-------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~------~~~~~d~~g~tpLh~A~~~g~~~~v~~L  253 (547)
                      .|++++.       .+..+.++++.+...+..+....+......+.      ........+.++|+.++..+..+++++|
T Consensus       219 ~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~L  298 (346)
T d2ajaa1         219 CPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL  298 (346)
T ss_dssp             SHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred             CCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHH
Confidence            7654321       12223344444443333333322221111100      0011122234567777777777777777


Q ss_pred             hccCCCccee---cCCCCCchHHHHHHHcCCHHHHHHHhhc
Q 008977          254 LDHDKSAAFI---GGKDRNMTALHLAAASGHIMVVDRILSS  291 (547)
Q Consensus       254 l~~~~~~~~~---~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  291 (547)
                      ++.+......   ..+.+|+||||+|++.|+.++|++|++.
T Consensus       299 l~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         299 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            7655432211   1123466777777777777777777753

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=8.5e-28  Score=236.21  Aligned_cols=229  Identities=14%  Similarity=0.034  Sum_probs=166.7

Q ss_pred             cccccccCCChHHHHHHHcCCHHHHHH---HHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHH
Q 008977           74 VLFQADAKGDSPLHLAAKKGDAAIVKF---LIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKIL  150 (547)
Q Consensus        74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~---Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~L  150 (547)
                      .++.++..|.||||+||.+||.+++++   |++.+++                ++.+|.+|.||||+|++.|+.+++++|
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~----------------in~~~~~g~taL~~Aa~~G~~~~v~~L  145 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI----------------VKVIQAENYQAFRLAAENGHLHVLNRL  145 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS----------------CC--CHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc----------------ccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            345678899999999999999887776   6776665                677899999999999999999999999


Q ss_pred             HhhCCCCCCC-CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCC---CCCCCchHHHHHHhcCCHHHHHHHHcccccchh
Q 008977          151 IVADPHVPYS-ANRNNETPLYMAAANGSVEIVAKILQKCPSPAH---EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSL  226 (547)
Q Consensus       151 l~~~~~~~~~-~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~  226 (547)
                      ++.|++.+.. .+.+|.||||+|+..|+.+++++|++.|++...   .+.++.+|+|.|+.+|+.+++++|++.+.....
T Consensus       146 l~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         146 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             HHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             HHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch
Confidence            9999987632 234689999999999999999999999976533   334567888999999999999999965543322


Q ss_pred             hh----hhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCC-------CCCchHHHHHHHcCCHHHHHHHhhcCCCc
Q 008977          227 TA----VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGK-------DRNMTALHLAAASGHIMVVDRILSSCDGC  295 (547)
Q Consensus       227 ~~----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-------~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  295 (547)
                      ..    .....+.++++.+...+..+....+.....+......+       ..+.++++.|+..|+.+++++|++.+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~  305 (346)
T d2ajaa1         226 AEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK  305 (346)
T ss_dssp             HHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTG
T ss_pred             HHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChh
Confidence            11    12233445666666665555555554433322211111       12357899999999999999999876542


Q ss_pred             c----ccccCCCCcHHHHHHHhcCccc
Q 008977          296 C----AKVDERGWNFLHFAMVSLDLLQ  318 (547)
Q Consensus       296 ~----~~~d~~g~t~Lh~A~~~~~~~~  318 (547)
                      .    ...+.+|+||||+|++.|+.+.
T Consensus       306 ~~~~~~~~~~~g~T~LhlA~~~Gn~e~  332 (346)
T d2ajaa1         306 ALAPTATIPGDANELLRLALRLGNQGA  332 (346)
T ss_dssp             GGSSCCSSTTCCCHHHHHHHHHTCTTH
T ss_pred             hhcccccCCCCCCcHHHHHHHcCcHHH
Confidence            2    2335679999999999999643

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9e-25  Score=188.96  Aligned_cols=154  Identities=22%  Similarity=0.244  Sum_probs=137.9

Q ss_pred             CHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHH
Q 008977          133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTE  212 (547)
Q Consensus       133 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~  212 (547)
                      +|||+|+..|+.+++++|+++|++++ .+|..|.||||+|+ .|+.|++++|+++|++++..+..+.++++.++..+..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n-~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            79999999999999999999999986 78999999999885 79999999999999999999999999999999999999


Q ss_pred             HHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcC
Q 008977          213 VIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSC  292 (547)
Q Consensus       213 ~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  292 (547)
                      .++.++...   ...+..|..|.+|||+|+..++.++++.|+++++... ...+..|+||||+|++.|+.+++++|+++|
T Consensus        81 ~~~~l~~~~---~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~-~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV-GHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccc---ccccccccccccccccccccccccccccccccccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999998443   3356678999999999999999999999999987332 223447999999999999999999999875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-24  Score=187.53  Aligned_cols=152  Identities=23%  Similarity=0.218  Sum_probs=125.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR  163 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  163 (547)
                      +.||.||..|+.++|+.|++.+...               ++.+|..|.||||+|+ .|+.+++++|++++.+++ ..+.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~---------------~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~-~~~~   66 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH---------------PDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDT   66 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC---------------TTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC---------------CCccCCCCCccccccc-cccccccccccccccccc-cccc
Confidence            4599999999999999998864322               5677889999999886 478899999999888876 6677


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977          164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY  243 (547)
Q Consensus       164 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~  243 (547)
                      .|.+|++.++..++.++++.+++++++++..+..|.||||+|+..|+.+++++|+.    +..++.+|.+|+||||+|+.
T Consensus        67 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~----~~~~~~~d~~G~TpL~~A~~  142 (156)
T d1bd8a_          67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA----ESDLHRRDARGLTPLELALQ  142 (156)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT----TSCTTCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccCCCCeeeccccccccccccccccc----cccccccCCCCCCHHHHHHH
Confidence            88999999999999999999999999888888888999999999899888887762    23456778888888888888


Q ss_pred             cCChHHHHHHhcc
Q 008977          244 SGRELTSKLLLDH  256 (547)
Q Consensus       244 ~g~~~~v~~Ll~~  256 (547)
                      .|+.+++++|+++
T Consensus       143 ~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         143 RGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHhh
Confidence            8888888888765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=7.5e-24  Score=182.43  Aligned_cols=149  Identities=24%  Similarity=0.253  Sum_probs=89.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR  163 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  163 (547)
                      ||||.||+.|+.++|++||+++++.                + .|..|.||||+|+..++.++++.++....... ..+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~----------------~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~   65 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPF----------------T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTK   65 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC----------------C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCc----------------c-cccCCCcccccccccccccccccccccccccc-cccc
Confidence            6677777777777777777666542                1 35666677777777667666666666555543 4455


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977          164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY  243 (547)
Q Consensus       164 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~  243 (547)
                      .+.++++.++...+.++++++++++++.+..+.+|.||||+|+..|+.+++++|++++   ..++.+|.+|.||||+|+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g---ad~~~~d~~g~Tpl~~A~~  142 (153)
T d1awcb_          66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG---ADVHTQSKFCKTAFDISID  142 (153)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccc---cCCcccCCCCCCHHHHHHH
Confidence            5566666666666666666666666666555556666666666666666555555222   2334455555555555555


Q ss_pred             cCChHHHHHH
Q 008977          244 SGRELTSKLL  253 (547)
Q Consensus       244 ~g~~~~v~~L  253 (547)
                      +|+.+++++|
T Consensus       143 ~g~~eiv~lL  152 (153)
T d1awcb_         143 NGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHhC
Confidence            5555555543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=8.6e-24  Score=182.07  Aligned_cols=150  Identities=20%  Similarity=0.224  Sum_probs=132.3

Q ss_pred             CCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCH
Q 008977          132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT  211 (547)
Q Consensus       132 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~  211 (547)
                      .||||.|++.|+.+++++|+++|++.+  .|..|.||||+|+..++.++++.++.........+..+.++++.++...+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            489999999999999999999998765  688999999999999999999999999888887888888999999999999


Q ss_pred             HHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHH
Q 008977          212 EVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRI  288 (547)
Q Consensus       212 ~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  288 (547)
                      +.++.++.++   ...+.+|.+|+||||+|+..|+.+++++|+++|++++..+  .+|.||||+|+.+|+.|++++|
T Consensus        81 ~~~~~l~~~~---~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d--~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHG---ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS--KFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccC---CccccccccCchHHHhhhhcchhheeeeccccccCCcccC--CCCCCHHHHHHHcCCHHHHHhC
Confidence            9999998443   3456678999999999999999999999999998887553  4699999999999999999865

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.7e-23  Score=179.55  Aligned_cols=152  Identities=25%  Similarity=0.278  Sum_probs=132.6

Q ss_pred             CHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHH
Q 008977          133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTE  212 (547)
Q Consensus       133 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~  212 (547)
                      +.|+.|+..|+.++++.|++.+.......|..|.||||+|+ .|+.+++++|++++.+++..+..|.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            46999999999999999998754334478999999999886 58899999999999999999999999999999999999


Q ss_pred             HHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhc
Q 008977          213 VIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS  291 (547)
Q Consensus       213 ~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  291 (547)
                      +++.+++++   ..++.+|..|+||||+|+..|+.+++++|+ .+++.+..  +.+|+||||+|++.|+.+++++|+++
T Consensus        83 ~~~~~l~~~---~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~--d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHG---ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRR--DARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTT---CCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCC--CTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccc---cccccccCCCCeeecccccccccccccccc-cccccccc--CCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999443   345678899999999999999999999887 56666543  45699999999999999999999875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.5e-23  Score=170.01  Aligned_cols=120  Identities=17%  Similarity=0.165  Sum_probs=104.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC
Q 008977           82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA  161 (547)
Q Consensus        82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  161 (547)
                      +.++||+||+.|+.++|++|+++|++                ++.++..|.||||.|+ .|+.+++++|+++|++++...
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad----------------~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~   65 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN----------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD   65 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC----------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc----------------cccccccccccccccc-ccccccccccccccccccccc
Confidence            46899999999999999999998876                5677899999999775 689999999999999887443


Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHH
Q 008977          162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLF  218 (547)
Q Consensus       162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  218 (547)
                      +..+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+
T Consensus        66 ~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          66 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            334457999999999999999999999999999999999999999999999999887

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=7.6e-24  Score=203.93  Aligned_cols=186  Identities=16%  Similarity=0.135  Sum_probs=99.9

Q ss_pred             cccc-cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCH-------H
Q 008977           74 VLFQ-ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSV-------D  145 (547)
Q Consensus        74 ~~~~-~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~-------~  145 (547)
                      +++. .|.+|+||||+||..|+.++|++|+++|++                ++.+|..|+||||.|+..++.       +
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad----------------~~~~d~~G~TpL~~A~~~~~~~~~~~~~~  161 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN----------------RLYGDNMGESCLVKAVKSVNNYDSGTFEA  161 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTBCCTTCCCHHHHHHHSSHHHHTTCHHH
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----------------CCcCCcccccHHHHhhhcccchhhhhHHH
Confidence            4453 388899999999999999999999998877                567788899999999986652       3


Q ss_pred             HHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCC----HHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHccc
Q 008977          146 VAKILIVADPHVPYSANRNNETPLYMAAANGS----VEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE  221 (547)
Q Consensus       146 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~----~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~  221 (547)
                      +++++..   .. ...|..|+||||+++..+.    .+.+++.++                         .++..+..  
T Consensus       162 ll~~l~~---~~-~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~l~~--  210 (301)
T d1sw6a_         162 LLDYLYP---CL-ILEDSMNRTILHHIIITSGMTGCSAAAKYYLD-------------------------ILMGWIVK--  210 (301)
T ss_dssp             HHHHHGG---GG-GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHH-------------------------HHHHHHHH--
T ss_pred             HHHHHhh---hh-hhcccccCCHHHHHHHHhCccccHHHHHHHHH-------------------------HHHHHHHh--
Confidence            4444432   22 3567788899988875443    223222211                         11222221  


Q ss_pred             ccchhhhhhccCCCcHHhHHHhcCChHHHHH-----HhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCcc
Q 008977          222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKL-----LLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCC  296 (547)
Q Consensus       222 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~-----Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  296 (547)
                      ............+.++++.+........+..     ++...  +  ...|.+|+||||+|+++|+.++|++|++.++++ 
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i--n~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~-  285 (301)
T d1sw6a_         211 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM--L--NAQDSNGDTCLNIAARLGNISIVDALLDYGADP-  285 (301)
T ss_dssp             GGGCCEEEC----------------CHHHHHCSHHHHHHHT--T--TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT-
T ss_pred             cCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC--c--cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-
Confidence            1111111122223333333333222211111     11111  1  112335677777777777777777777766664 


Q ss_pred             ccccCCCCcHHHHHH
Q 008977          297 AKVDERGWNFLHFAM  311 (547)
Q Consensus       297 ~~~d~~g~t~Lh~A~  311 (547)
                      +.+|.+|+||||+|+
T Consensus       286 ~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         286 FIANKSGLRPVDFGA  300 (301)
T ss_dssp             TCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCCHHHHcC
Confidence            455777777777764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.2e-23  Score=200.70  Aligned_cols=185  Identities=13%  Similarity=0.141  Sum_probs=123.1

Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCH-------HHHHHHHcccccch
Q 008977          153 ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT-------EVIKQLFLHEEKRS  225 (547)
Q Consensus       153 ~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~-------~~v~~Ll~~~~~~~  225 (547)
                      .+.+++...|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||.|+..++.       ++++++.      .
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~------~  168 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY------P  168 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG------G
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh------h
Confidence            44555544588999999999999999999999999999999999999999999986542       3333332      2


Q ss_pred             hhhhhccCCCcHHhHHHhcCCh----H--------HHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhc--
Q 008977          226 LTAVRDKYGWTPLHHAAYSGRE----L--------TSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS--  291 (547)
Q Consensus       226 ~~~~~d~~g~tpLh~A~~~g~~----~--------~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~--  291 (547)
                      ....+|..|+||||.++..+..    .        ++..+++.+......... .+.++++.+........++.+...  
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN-EKESKPNDKNGERKDSILENLDLKWI  247 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCSHHHH
T ss_pred             hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccc-cccchhHHHHhcchHHHHHHHhhHHH
Confidence            3456788999999988875542    2        334555555444333332 456666666555544443332111  


Q ss_pred             CCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHH
Q 008977          292 CDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA  350 (547)
Q Consensus       292 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~  350 (547)
                      ....++.+|.+|+||||+|+++++.+      +...|++.|++++.+|++|+||||+|+
T Consensus       248 ~~~~in~~D~~G~TpLh~A~~~g~~~------iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         248 IANMLNAQDSNGDTCLNIAARLGNIS------IVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHTTTCCCTTSCCHHHHHHHHCCHH------HHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HhcCccCCCCCCCCHHHHHHHcCCHH------HHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            01124667999999999999999964      446777889999999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=3.3e-23  Score=169.40  Aligned_cols=107  Identities=29%  Similarity=0.399  Sum_probs=97.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCC
Q 008977           83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN  162 (547)
Q Consensus        83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~  162 (547)
                      +|||++|++.|+.++|++|+++|.+                ++.++..|.||||+|+..|+.+++++|+++|++++ .+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d----------------~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~~d   65 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED----------------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APD   65 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC----------------CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-CCS
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc----------------cccccccccccccccccccccccccccccccceee-ecc
Confidence            6899999999999999999998876                56778999999999999999999999999999987 778


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHH
Q 008977          163 RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV  206 (547)
Q Consensus       163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~  206 (547)
                      ..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|.
T Consensus        66 ~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             SSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            89999999999999999999999999999999999999999883

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-21  Score=162.29  Aligned_cols=120  Identities=19%  Similarity=0.218  Sum_probs=85.6

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCc-hHHHHHHhcC
Q 008977          131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGK-TALHAAVYTY  209 (547)
Q Consensus       131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~-t~Lh~A~~~~  209 (547)
                      +.++||.|+..|+.+++++|+++|++++ ..+..|.||+|.|+ .|+.+++++|+++|++++..+..+. +|||+|++.|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n-~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccc-cccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            4577888888888888888888887776 66777888887654 6788888888888887777666654 4777777777


Q ss_pred             CHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhc
Q 008977          210 PTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLD  255 (547)
Q Consensus       210 ~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  255 (547)
                      +.+++++|+++   +...+.+|..|+||||+|++.|+.+++++|++
T Consensus        81 ~~~~v~~Ll~~---ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccc---ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            77777777632   23345566667777777777777777666654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.8e-21  Score=161.96  Aligned_cols=118  Identities=22%  Similarity=0.220  Sum_probs=102.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR  163 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  163 (547)
                      ++|+.||..|+.++|++|+++|++                ++.+|.+|.||||+|+..|+.+++++|++.|++.+ ..|.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d----------------~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~d~   65 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD----------------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADS   65 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS----------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC----------------ccccccccccccccccccccccccccccccccccc-cccc
Confidence            689999999999999999998877                56788999999999999999999999999998876 7889


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCC-CCchHHHHH--HhcCCHHHHHHHH
Q 008977          164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGP-DGKTALHAA--VYTYPTEVIKQLF  218 (547)
Q Consensus       164 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~-~g~t~Lh~A--~~~~~~~~v~~Ll  218 (547)
                      +|+||||+|+..|+.+++++|+++|++++..+. +++|+++++  ...|+.+++++|+
T Consensus        66 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~  123 (130)
T d1ycsb1          66 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  123 (130)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             cCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHH
Confidence            999999999999999999999999999887653 577776655  5677888998887

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.2e-21  Score=159.99  Aligned_cols=105  Identities=23%  Similarity=0.225  Sum_probs=76.2

Q ss_pred             CHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHH
Q 008977          133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTE  212 (547)
Q Consensus       133 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~  212 (547)
                      |||++|++.|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+++.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n-~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCC-CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccc-cccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            57777777777777777777777765 56777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcccccchhhhhhccCCCcHHhHH
Q 008977          213 VIKQLFLHEEKRSLTAVRDKYGWTPLHHA  241 (547)
Q Consensus       213 ~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A  241 (547)
                      ++++|++++   ..++.+|.+|+||||+|
T Consensus        83 ~v~~Ll~~G---ad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 CVKLLLSKG---ADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTC---CCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhccc---ccceeeCCCCCCHHHHH
Confidence            777777433   33556677777777766

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=6.7e-20  Score=156.37  Aligned_cols=128  Identities=19%  Similarity=0.122  Sum_probs=109.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHc---CCHHHHHHHHhhCCCCCCC
Q 008977           84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL---RSVDVAKILIVADPHVPYS  160 (547)
Q Consensus        84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~  160 (547)
                      ..|+.|++.++...+..++..+.+.....          .....+..|+||||+|++.   |+.+++++|+++|++++ .
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~----------~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin-~   76 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKI----------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-K   76 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBC----------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-C
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCC----------CcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh-h
Confidence            35678899999999999988876532211          1233467899999999975   67899999999999987 7


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccc
Q 008977          161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEE  222 (547)
Q Consensus       161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  222 (547)
                      +|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.+.
T Consensus        77 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          77 QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            89999999999999999999999999999999999999999999999999999999995443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-20  Score=156.24  Aligned_cols=84  Identities=25%  Similarity=0.197  Sum_probs=49.6

Q ss_pred             HhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHH
Q 008977          134 PLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEV  213 (547)
Q Consensus       134 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  213 (547)
                      +|+.|+..|+.+++++|+++|++++ .+|.+|.||||+|+..|+.+++++|++.|++++..|.+|+||||+|+.+|+.++
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n-~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcc-ccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            4556666666666666666665554 455556666666666666666666666666555555555555555555555555


Q ss_pred             HHHHH
Q 008977          214 IKQLF  218 (547)
Q Consensus       214 v~~Ll  218 (547)
                      +++|+
T Consensus        83 v~~Ll   87 (130)
T d1ycsb1          83 CKFLV   87 (130)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55555

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.7e-18  Score=147.52  Aligned_cols=122  Identities=25%  Similarity=0.238  Sum_probs=89.8

Q ss_pred             HhHHHHHcCCHHHHHHHHhhCCCCCCC-----CCCCCCcHHHHHHH---CCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977          134 PLHEAVRLRSVDVAKILIVADPHVPYS-----ANRNNETPLYMAAA---NGSVEIVAKILQKCPSPAHEGPDGKTALHAA  205 (547)
Q Consensus       134 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~---~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A  205 (547)
                      .|+.|++.++...+..++..|.++...     .+..|+||||+|+.   .|+.+++++|+++|++++.+|.+|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            466788888888888888887765422     25668888888886   3667888888888888888777788888888


Q ss_pred             HhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCC
Q 008977          206 VYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDK  258 (547)
Q Consensus       206 ~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~  258 (547)
                      +..|+.+++++|+++   +..++.+|.+|+||||+|++.|+.+++++|++.+.
T Consensus        89 ~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          89 CLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccc---CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            777777777777733   33345667777777777777777777777776543