Citrus Sinensis ID: 008988

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
MQTSQKHQSAASVQRMYHQPVQGIEPCCLSHVQILDNNICSDVSSQGTNMSFQTYKEQFYTLDSSTATTGFSHDSPSAVSISSNRSTFSPQGSQSYQSDPHHSPDNAYGSPMSGSSIVDEGNELRNKLRELEISLLGPESDIIDSCSCCFKSGTHQDTSAASWNWDQLMEMIPRLDLKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEEEccEEEEEEcccEEEEEEccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHccccEEEcHHHccHccccHHHcccccccEEEEEHHHHHHcccccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEcccEEEEcccccEEEEEEccc
mqtsqkhqSAASVQRMyhqpvqgiepcclshvqildnnicsdvssqgtnmsFQTYKEQFYTldsstattgfshdspsavsissnrstfspqgsqsyqsdphhspdnaygspmsgssivDEGNELRNKLRELEIsllgpesdiidscsccfksgthqdtsaasWNWDQLMEMIPRLDLKQVLIFCAQavsdgdisTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYkalkceqpvsSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAkrpggsplvritgiddsqstharggglDIVGKRLSEFaascnvpfefqdTAMTACEVERqhlrvqpgeavvvnfpfvlhhmpdesvsteNHRDRLLRLVKSLSPKVVTLVEqesktntspfFHRFLETLDYYTAMFEsidvtrprddkqriSAEQHCVARDIVNMIACEGIERVERHELLGKWRSrfmmagftpyrlsplvtnAVRDVLKdydsnyrveendgalyLGWRNRAMATSSAWK
mqtsqkhqsaaSVQRMYHQPVQGIEPCCLSHVQILDNNICSDVSSQGTNMSFQTYKEQFYTLDSSTATTGFSHDSPSAVSISSNRSTFSPQGSQSYQSDPHHSPDNAYGSPMSGSSIVDEGNELRNKLRELEISLLGPESDIIDSCSCCFKSGTHQDTSAASWNWDQLMEMIPRLDLKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGiddsqstharGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTlveqesktntspffhrFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGftpyrlsplvtnAVRDVLKDydsnyrveendgalylgwrnramatssawk
MQTSQKHQSAASVQRMYHQPVQGIEPCCLSHVQILDNNICSDVSSQGTNMSFQTYKEQFYTLDSSTATTGFSHDSPSAVSISSNRSTFSPQGSQSYQSDPHHSPDNAYGSPMSGSSIVDEGNELRNKLRELEISLLGPESDIIDSCSCCFKSGTHQDTSAASWNWDQLMEMIPRLDLKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK
****************YHQPVQGIEPCCLSHVQILDNNICSDVSSQGTNMSFQTYKEQFYTL********************************************************************LEISLLGPESDIIDSCSCCFKSGTHQDTSAASWNWDQLMEMIPRLDLKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGID*****HARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHM************RLLRLVKSLSPKVVTLVEQ***TNTSPFFHRFLETLDYYTAMFESIDVTR******RISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNR*********
**********************************************************FYTLDSSTAT**************************************************************************************************************QVLIFCAQAVSDGDISTAAGLMRVLEQMVSV*GEPIERLGAYMLEGLRARLEFSGSKI********P*SSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAK*PGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK
****************YHQPVQGIEPCCLSHVQILDNNICSDVSSQGTNMSFQTYKEQFYTLDSSTAT**************************************AYGSPMSGSSIVDEGNELRNKLRELEISLLGPESDIIDSCSCCFKSGTHQDTSAASWNWDQLMEMIPRLDLKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRA********
**************RMYHQPVQGIEPCCLSHVQILDNN************************************************************************************ELRNKLRELEISLL****************************WDQL**MIPRLDLKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK
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MQTSQKHQSAASVQRMYHQPVQGIEPCCLSHVQILDNNICSDVSSQGTNMSFQTYKEQFYTLDSSTATTGFSHDSPSAVSISSNRSTFSPQGSQSYQSDPHHSPDNAYGSPMSGSSIVDEGNELRNKLRELEISLLGPESDIIDSCSCCFKSGTHQDTSAASWNWDQLMEMIPRLDLKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query547 2.2.26 [Sep-21-2011]
Q9M0M5529 Scarecrow-like protein 13 yes no 0.956 0.988 0.624 0.0
Q9LDL7490 Scarecrow-like transcript no no 0.815 0.910 0.592 1e-158
Q8GVE1544 Chitin-inducible gibberel yes no 0.866 0.871 0.560 1e-155
Q8H125597 Scarecrow-like protein 5 no no 0.950 0.871 0.509 1e-148
Q9S7H5413 Scarecrow-like protein 21 no no 0.681 0.903 0.605 1e-134
Q69VG1571 Chitin-inducible gibberel no no 0.683 0.654 0.580 1e-130
Q9SDQ3593 Scarecrow-like protein 1 no no 0.936 0.863 0.409 1e-113
Q9XE58769 Scarecrow-like protein 14 no no 0.678 0.482 0.361 1e-63
Q9FYR7640 Scarecrow-like protein 8 no no 0.658 0.562 0.340 1e-57
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.645 0.598 0.347 3e-57
>sp|Q9M0M5|SCL13_ARATH Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2 Back     alignment and function desciption
 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/549 (62%), Positives = 412/549 (75%), Gaps = 26/549 (4%)

Query: 1   MQTSQKHQSAASVQRMYHQPVQGIEPCCLSHVQILDNNICSDVSSQGTNMSFQTYKEQFY 60
           MQTSQKH SAA +  +Y Q        C    Q  DN   SD+ S          KE F+
Sbjct: 1   MQTSQKHHSAAGLHMLYPQVY------CSPQFQAKDNKGFSDIPS----------KENFF 44

Query: 61  TLDSSTATTGF-SHDSPSAVSISSNRSTFSPQGSQSYQSDPHHSPDNAYGSPMSG-SSIV 118
           TL+SSTA+    S+DSPS VSI+S RS FSPQGSQS  SD HHSPDN YGSP+SG SS+ 
Sbjct: 45  TLESSTASGSLPSYDSPS-VSITSGRSPFSPQGSQSCISDLHHSPDNVYGSPLSGVSSLA 103

Query: 119 DEGNELRNKLRELEISLLGPESDIIDSCSCCFKSGTHQDTSAASWNWDQLMEMIPRLDLK 178
            +   +++K+RELE+SLL  ++ + +       +G        SWNWD+L+ + P+LDLK
Sbjct: 104 YDEAGVKSKIRELEVSLLSGDTKVEEFSGFSPAAGK-------SWNWDELLALTPQLDLK 156

Query: 179 QVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYK 238
           +VL+  A+AV+DGD +TA G + VLEQMVSVSG PI+RLG YM EGLRARLE SGS IYK
Sbjct: 157 EVLVEAARAVADGDFATAYGFLDVLEQMVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYK 216

Query: 239 ALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQW 298
           +LKC +P   ELMSYMSVL++ICPYWKFAY +ANV I EA+  E  +HIIDFQIAQG+Q+
Sbjct: 217 SLKCNEPTGRELMSYMSVLYEICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQY 276

Query: 299 MFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAM 358
           MFL+  LAKRPGG PL+R+TG+DDSQST+ARGGGL +VG+RL+  A SC VPFEF D  M
Sbjct: 277 MFLIQELAKRPGGPPLLRVTGVDDSQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAIM 336

Query: 359 TACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQ 418
           + C+V+R+HL ++PG AVVVNFP+VLHHMPDESVS ENHRDRLL L+KSLSPK+VTLVEQ
Sbjct: 337 SGCKVQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQ 396

Query: 419 ESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIE 478
           ES TNTSPF  RF+ETLDYYTAMFESID  RPRDDKQRISAEQHCVARDIVNMIACE  E
Sbjct: 397 ESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESE 456

Query: 479 RVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNR 538
           RVERHE+LGKWR R MMAGFT + +S     A  ++LK YD NY++  ++GALYL W+ R
Sbjct: 457 RVERHEVLGKWRVRMMMAGFTGWPVSTSAAFAASEMLKAYDKNYKLGGHEGALYLFWKRR 516

Query: 539 AMATSSAWK 547
            MAT S WK
Sbjct: 517 PMATCSVWK 525
Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1 Back     alignment and function description
>sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9S7H5|SCL21_ARATH Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1 Back     alignment and function description
>sp|Q69VG1|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SDQ3|SCL1_ARATH Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XE58|SCL14_ARATH Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2 Back     alignment and function description
>sp|Q9FYR7|SCL8_ARATH Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1 Back     alignment and function description
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
224137264546 GRAS family transcription factor [Populu 0.994 0.996 0.738 0.0
356555748552 PREDICTED: scarecrow-like protein 13-lik 0.994 0.985 0.698 0.0
224089713546 GRAS family transcription factor [Populu 0.996 0.998 0.709 0.0
225468380545 PREDICTED: scarecrow-like protein 13 [Vi 0.990 0.994 0.708 0.0
255587296542 Chitin-inducible gibberellin-responsive 0.987 0.996 0.701 0.0
356532656548 PREDICTED: scarecrow-like protein 13-lik 0.989 0.987 0.692 0.0
449434034541 PREDICTED: scarecrow-like protein 13-lik 0.985 0.996 0.652 0.0
358248604542 uncharacterized protein LOC100792931 [Gl 0.981 0.990 0.684 0.0
302399041542 SCL domain class transcription factor [M 0.983 0.992 0.671 0.0
356562535545 PREDICTED: scarecrow-like protein 13-lik 0.985 0.988 0.672 0.0
>gi|224137264|ref|XP_002322514.1| GRAS family transcription factor [Populus trichocarpa] gi|222867144|gb|EEF04275.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/547 (73%), Positives = 460/547 (84%), Gaps = 3/547 (0%)

Query: 1   MQTSQKHQSAASVQRMYHQPVQGIEPCCLSHVQILDNNICSDVSSQGTNMSFQTYKEQFY 60
           MQTSQKH+SA  + R YHQPVQ I+P  LSH+QILD+N+ SD  SQG  +SFQT + +F+
Sbjct: 1   MQTSQKHRSAG-IHRFYHQPVQEIDPYGLSHIQILDSNMYSDGGSQGAAISFQTDQGEFF 59

Query: 61  TLDSSTATTGF-SHDSPSAVSISSNRSTFSPQGSQSYQSDPHHSPDNAYGSPMSGSSIVD 119
           TL+SS+AT GF ++DSP+A S+SSNRS FSPQGS S  SDPHHSPD  YGSP+SGSS  D
Sbjct: 60  TLESSSATAGFVNYDSPAA-SVSSNRSPFSPQGSHSCISDPHHSPDTVYGSPLSGSSSAD 118

Query: 120 EGNELRNKLRELEISLLGPESDIIDSCSCCFKSGTHQDTSAASWNWDQLMEMIPRLDLKQ 179
           E   LR KLRELEISLLGPESDI DS S CF SG +Q  S+ASW+W+Q+ME+IPRLDLK 
Sbjct: 119 EDIILRQKLRELEISLLGPESDITDSGSFCFVSGGYQAESSASWDWNQMMEVIPRLDLKH 178

Query: 180 VLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKA 239
           VL+ CA AVS+ DI  AAGLM VL+QMVSVSGEPI+RLGAYMLEGLRARLE SGSKIY+A
Sbjct: 179 VLLACADAVSNADIQRAAGLMHVLDQMVSVSGEPIQRLGAYMLEGLRARLELSGSKIYRA 238

Query: 240 LKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWM 299
           LKCE P+SS+LM+YM +L+QICPYWKFAY SANVVI EAVE E  IHIIDFQIAQG+QW 
Sbjct: 239 LKCEAPISSDLMTYMGILYQICPYWKFAYTSANVVIQEAVEYEPRIHIIDFQIAQGSQWS 298

Query: 300 FLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMT 359
            L+  LA RPGG P++RITG+DDSQS HARGGGLDIVG+RLS+ A  CNVPFEF D AM 
Sbjct: 299 VLMQMLAYRPGGPPVIRITGVDDSQSAHARGGGLDIVGQRLSKVAEECNVPFEFHDVAMD 358

Query: 360 ACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQE 419
            CEV+ +HLRVQPGEAVVVNFP+VLHHMPDESV+T NHRDRL+R+VKSLSP++VTL+EQE
Sbjct: 359 GCEVQLEHLRVQPGEAVVVNFPYVLHHMPDESVTTWNHRDRLIRMVKSLSPRIVTLIEQE 418

Query: 420 SKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIER 479
           S TNT PFF RF+ETLDYYTAMFESIDV RP+DDKQRI+AEQHCVARDIVNMIACE  ER
Sbjct: 419 SNTNTKPFFPRFIETLDYYTAMFESIDVGRPKDDKQRINAEQHCVARDIVNMIACEEAER 478

Query: 480 VERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRA 539
           VERHELL KWRSRF MAGF  Y LS  VT AVRD+LK+YD NY V+E D ALYL WR+R 
Sbjct: 479 VERHELLAKWRSRFTMAGFNQYPLSSSVTTAVRDMLKEYDRNYSVQERDWALYLRWRHRD 538

Query: 540 MATSSAW 546
           MATSSAW
Sbjct: 539 MATSSAW 545

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356555748|ref|XP_003546192.1| PREDICTED: scarecrow-like protein 13-like [Glycine max] Back     alignment and taxonomy information
>gi|224089713|ref|XP_002308802.1| GRAS family transcription factor [Populus trichocarpa] gi|222854778|gb|EEE92325.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225468380|ref|XP_002272401.1| PREDICTED: scarecrow-like protein 13 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255587296|ref|XP_002534218.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] gi|223525687|gb|EEF28164.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356532656|ref|XP_003534887.1| PREDICTED: scarecrow-like protein 13-like [Glycine max] Back     alignment and taxonomy information
>gi|449434034|ref|XP_004134801.1| PREDICTED: scarecrow-like protein 13-like [Cucumis sativus] gi|449526395|ref|XP_004170199.1| PREDICTED: scarecrow-like protein 13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|358248604|ref|NP_001240165.1| uncharacterized protein LOC100792931 [Glycine max] gi|255644902|gb|ACU22951.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|302399041|gb|ADL36815.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|356562535|ref|XP_003549525.1| PREDICTED: scarecrow-like protein 13-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.815 0.910 0.592 2.8e-144
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.989 0.906 0.507 1.2e-136
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.681 0.903 0.605 4.1e-120
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.782 0.721 0.454 2.6e-102
TAIR|locus:2025022769 SCL14 "SCARECROW-like 14" [Ara 0.676 0.481 0.366 2.7e-59
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.652 0.652 0.355 3.4e-54
TAIR|locus:2075155583 AT3G46600 [Arabidopsis thalian 0.892 0.837 0.298 1.3e-52
TAIR|locus:2184625640 SCL8 "AT5G52510" [Arabidopsis 0.658 0.562 0.340 2.7e-52
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.647 0.664 0.346 2.7e-52
TAIR|locus:2148293610 AT5G59450 [Arabidopsis thalian 0.680 0.609 0.322 1.2e-51
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1410 (501.4 bits), Expect = 2.8e-144, P = 2.8e-144
 Identities = 268/452 (59%), Positives = 343/452 (75%)

Query:    98 SDPHHSPDNAYGSPMSGSSIVDEGNELRNKLRELEISLLGPES-DIIDSCSCCFKSGTHQ 156
             S P+++   A      GS + DE N+ ++K+RE+E  ++GP+S D++  C+  F S   Q
Sbjct:    43 SPPYNALSTATYDDTCGSCVTDELNDFKHKIREIETVMMGPDSLDLLVDCTDSFDSTASQ 102

Query:   157 DTSAASWNWDQLMEMIPRLDLKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIER 216
             + +     W   +E I R DL+  L+ CA+A+S+ D+  A  +M  L QMVSVSGEPI+R
Sbjct:   103 EING----WRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQR 158

Query:   217 LGAYMLEGLRARLEFSGSKIYKAL-KCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVI 275
             LGAY+LEGL A+L  SGS IYKAL +C +P S+EL+SYM +L+++CPY+KF YMSAN  I
Sbjct:   159 LGAYLLEGLVAQLASSGSSIYKALNRCPEPASTELLSYMHILYEVCPYFKFGYMSANGAI 218

Query:   276 GEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDI 335
              EA++ E+ +HIIDFQI QG+QW+ L+ A A RPGG P +RITGIDD  S +ARGGGL I
Sbjct:   219 AEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSI 278

Query:   336 VGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTE 395
             VG RL++ A   NVPFEF   +++  EV+ ++L V+PGEA+ VNF FVLHHMPDESVSTE
Sbjct:   279 VGNRLAKLAKQFNVPFEFNSVSVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTE 338

Query:   396 NHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQ 455
             NHRDRLLR+VKSLSPKVVTLVEQES TNT+ FF RF+ET++YY AMFESIDVT PRD KQ
Sbjct:   339 NHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQ 398

Query:   456 RISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVL 515
             RI+ EQHC+ARD+VN+IACEG +RVERHELLGKWRSRF MAGFTPY LSPLV + ++ +L
Sbjct:   399 RINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLL 458

Query:   516 KDYDSNYRVEENDGALYLGWRNRAMATSSAWK 547
             ++Y   YR+EE DGALYLGW +R +  S AWK
Sbjct:   459 RNYSDKYRLEERDGALYLGWMHRDLVASCAWK 490
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0004871 "signal transducer activity" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0009640 "photomorphogenesis" evidence=IMP
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025022 SCL14 "SCARECROW-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075155 AT3G46600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184625 SCL8 "AT5G52510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148293 AT5G59450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GVE1CIGR2_ORYSJNo assigned EC number0.56050.86650.8713yesno
Q9M0M5SCL13_ARATHNo assigned EC number0.62470.95610.9886yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-157
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  453 bits (1168), Expect = e-157
 Identities = 178/376 (47%), Positives = 241/376 (64%), Gaps = 9/376 (2%)

Query: 177 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKI 236
           L  +L+ CA+AVS GD+S A  ++  L Q+ S +G+P++RL AY  E L ARL  SGS I
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 237 YKALKCEQP---VSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIA 293
           Y AL         S E+++   + +++ PY KF + +AN  I EA E E  +HIIDF I 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 294 QGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEF 353
           QG QW  L+ ALA RPGG P +RITGI   Q + A    L+  G RL++FA S  VPFEF
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSA--EELEETGDRLAQFADSLGVPFEF 178

Query: 354 Q-DTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKV 412
               A    +++ + L V+PGEA+ VN  F LH + DESVS E+     LRLVKSL+PKV
Sbjct: 179 NPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPT--FLRLVKSLNPKV 236

Query: 413 VTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMI 472
           VTLVEQE+  N++PF  RF+E L YY+A+F+S++ T PRD ++R   E+  + R+IVN++
Sbjct: 237 VTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVV 296

Query: 473 ACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSN-YRVEENDGAL 531
           ACEG ERVERHE  GKWR R   AGF P  LS       + +L+ Y  + YRVEE++G+L
Sbjct: 297 ACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSL 356

Query: 532 YLGWRNRAMATSSAWK 547
            LGW+ R +  +SAW+
Sbjct: 357 VLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 547
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 96.86
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 96.0
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 95.73
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 95.43
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.32
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 93.46
PRK06202232 hypothetical protein; Provisional 93.2
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 93.12
PRK08317241 hypothetical protein; Provisional 92.54
PLN02233261 ubiquinone biosynthesis methyltransferase 92.46
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 91.48
PLN02336475 phosphoethanolamine N-methyltransferase 91.44
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 91.15
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 91.03
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 90.75
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 90.74
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 90.59
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 89.97
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 89.79
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 88.86
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 87.16
PRK12335287 tellurite resistance protein TehB; Provisional 85.05
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 85.04
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 84.84
PRK05785226 hypothetical protein; Provisional 84.65
TIGR02081194 metW methionine biosynthesis protein MetW. This pr 84.39
PRK11207197 tellurite resistance protein TehB; Provisional 83.08
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 81.06
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 80.77
PLN02244340 tocopherol O-methyltransferase 80.65
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 80.57
TIGR03438301 probable methyltransferase. This model represents 80.51
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-114  Score=908.94  Aligned_cols=369  Identities=46%  Similarity=0.789  Sum_probs=354.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhccCCCccccccccCCCC---hHhHHHH
Q 008988          177 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPV---SSELMSY  253 (547)
Q Consensus       177 L~~LLl~CAeAV~~gd~~~A~~lL~~L~~~aS~~Gdp~qRlaaYF~eAL~aRl~~sg~~~y~al~~~~p~---~~ell~a  253 (547)
                      |++||++||+||+.||.+.|+.+|++|++++|++|+|+||||+||+|||++||.++|+.+|+++.+..++   ..+.+.+
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999887655443   5678888


Q ss_pred             HHHHHhhCchhhHHHHHHHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchH
Q 008988          254 MSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGL  333 (547)
Q Consensus       254 ~~~l~e~sP~~kFa~~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L  333 (547)
                      +++||++|||+||||||||||||||++|+++||||||||++|.|||+|||+||.|++|||+||||||+.|.++  ....+
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l  158 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL  158 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998765  34689


Q ss_pred             HHHHHHHHHHHHhCCCceEEEEe-cccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcE
Q 008988          334 DIVGKRLSEFAASCNVPFEFQDT-AMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKV  412 (547)
Q Consensus       334 ~~tG~rL~~fA~s~gvpFeF~~V-~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkv  412 (547)
                      ++||+||.+||+++||||||++| ..+++++++++|++++||+|||||+|+||||.++++..++||+.||+.||+|+|||
T Consensus       159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v  238 (374)
T PF03514_consen  159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV  238 (374)
T ss_pred             HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence            99999999999999999999996 44567899999999999999999999999999999988899999999999999999


Q ss_pred             EEEEecCCCCCCCChhHHHHHHHHHHHHHhhhhhccCCCCcHHHHHHHHHHHHHhhhhhhhcccccccccccchhhHHHH
Q 008988          413 VTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSR  492 (547)
Q Consensus       413 vtlvEqEan~ns~~F~~RF~EaL~yYsAlFDSLDa~lpr~~~eRi~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~R  492 (547)
                      ||++|+|+|||+++|++||.|||+||+|+|||||+++|+++.+|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus       239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r  318 (374)
T PF03514_consen  239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR  318 (374)
T ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCccccCChHHHHHHHHHHhcCC-CCcEEEecCcEEEEEECCceeEEEeecC
Q 008988          493 FMMAGFTPYRLSPLVTNAVRDVLKDYD-SNYRVEENDGALYLGWRNRAMATSSAWK  547 (547)
Q Consensus       493 ~~~AGF~~~pLS~~~~~qak~LL~~y~-~gy~v~e~~g~L~LgWk~rpL~s~SAWr  547 (547)
                      |.+|||+++|||+.+..|||.||+.|. +||+|++++|||+||||++||+++||||
T Consensus       319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            999999999999999999999999986 8999999999999999999999999998

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02081 metW methionine biosynthesis protein MetW Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 67/425 (15%), Positives = 124/425 (29%), Gaps = 128/425 (30%)

Query: 155 HQD--TSAASWNWDQLME-----MIPRLDLKQVLIFCAQAVSDGDI-------STAAGLM 200
           H D  T    + +  ++       +   D K V       +S  +I          +G +
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 201 RVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLFQI 260
           R+   ++S   E +++   ++ E LR   +F  S I    +  QP S     Y+    ++
Sbjct: 66  RLFWTLLSKQEEMVQK---FVEEVLRINYKFLMSPI--KTEQRQP-SMMTRMYIEQRDRL 119

Query: 261 C----PYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAK-RPGGSPLV 315
                 + K+     NV   +                       L  AL + RP  + L+
Sbjct: 120 YNDNQVFAKY-----NVSRLQPYLK-------------------LRQALLELRPAKNVLI 155

Query: 316 RITGIDDSQSTHARGGGLDIVGKR------LSEFAASCNVPFE-F------QDTAMTACE 362
                          G     GK          +   C + F+ F       ++  T  E
Sbjct: 156 -----------DGVLG----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 363 VERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKT 422
           +  Q L  Q    +  N+     H  +  +   + +  L RL+KS   +   LV      
Sbjct: 201 ML-QKLLYQ----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV------ 249

Query: 423 NTSPFFHRFLETLD--YYTAMFESIDV-------TRPRDDKQRISAEQHCVARDIVNMIA 473
                       L        + + ++       TR    KQ            I     
Sbjct: 250 ------------LLNVQNAKAWNAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHH 294

Query: 474 CEGIERVERHELLGKWRSRFMMAGFTPYRL-------SPLVTNAVRDVLKDYDS---NYR 523
              +   E   LL K+          P  L       +P   + + + ++D  +   N++
Sbjct: 295 SMTLTPDEVKSLLLKY------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 524 VEEND 528
               D
Sbjct: 349 HVNCD 353
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query547
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.04
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 96.45
3dh0_A219 SAM dependent methyltransferase; cystal structure, 96.33
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 96.24
1vl5_A260 Unknown conserved protein BH2331; putative methylt 96.1
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 96.09
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.97
3dtn_A234 Putative methyltransferase MM_2633; structural gen 95.91
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 95.72
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 95.68
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 95.43
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 94.89
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 94.82
2r3s_A335 Uncharacterized protein; methyltransferase domain, 94.81
1xxl_A239 YCGJ protein; structural genomics, protein structu 94.74
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 94.69
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 94.63
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 94.29
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 94.21
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 94.14
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 94.06
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 94.01
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 93.88
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 93.61
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 93.4
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 93.4
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 93.34
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 92.96
3hnr_A220 Probable methyltransferase BT9727_4108; structural 92.81
3gu3_A284 Methyltransferase; alpha-beta protein, structural 92.44
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 92.39
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 92.33
3f4k_A257 Putative methyltransferase; structural genomics, P 92.1
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 91.93
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 91.72
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 91.58
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 91.44
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 91.23
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 90.61
3m70_A286 Tellurite resistance protein TEHB homolog; structu 90.5
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 89.46
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 89.3
3ege_A261 Putative methyltransferase from antibiotic biosyn 89.02
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 89.0
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 88.28
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 88.28
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 87.92
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 87.74
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 87.72
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 87.41
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 87.05
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 86.97
3ocj_A305 Putative exported protein; structural genomics, PS 86.91
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 86.53
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 86.5
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 86.26
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 85.46
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 85.06
2zfu_A215 Nucleomethylin, cerebral protein 1; nucleolar prot 84.12
1wzn_A252 SAM-dependent methyltransferase; structural genomi 83.57
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 83.39
2p7i_A250 Hypothetical protein; putative methyltransferase, 83.23
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 83.2
2y1w_A348 Histone-arginine methyltransferase CARM1; histone 82.69
1vlm_A219 SAM-dependent methyltransferase; possible histamin 82.65
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 82.41
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 82.27
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 82.13
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 82.06
3giw_A277 Protein of unknown function DUF574; rossmann-fold 82.01
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 81.84
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 81.28
1zg3_A358 Isoflavanone 4'-O-methyltransferase; rossman fold, 80.7
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 80.49
3i9f_A170 Putative type 11 methyltransferase; structural gen 80.07
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.04  E-value=0.0073  Score=59.64  Aligned_cols=107  Identities=17%  Similarity=0.339  Sum_probs=62.9

Q ss_pred             eeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEeccccccc
Q 008988          284 IIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEV  363 (547)
Q Consensus       284 rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev  363 (547)
                      .-+|+|+|.|.|.    +...|+.+- +.|..+|||||.+.      ..++...+++.++  ....+++|..-  +..+ 
T Consensus        71 ~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~------~ml~~A~~~~~~~--~~~~~v~~~~~--D~~~-  134 (261)
T 4gek_A           71 GTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSP------AMIERCRRHIDAY--KAPTPVDVIEG--DIRD-  134 (261)
T ss_dssp             TCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCH------HHHHHHHHHHHTS--CCSSCEEEEES--CTTT-
T ss_pred             CCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCH------HHHHHHHHHHHhh--ccCceEEEeec--cccc-
Confidence            3479999999985    445566553 34678999999764      2456555554322  12234566432  2222 


Q ss_pred             ccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCc-EEEEEec
Q 008988          364 ERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPK-VVTLVEQ  418 (547)
Q Consensus       364 ~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pk-vvtlvEq  418 (547)
                          +...+-.+++.  .+.|||+++      ..|..+|+.| +.|+|. ++++.|.
T Consensus       135 ----~~~~~~d~v~~--~~~l~~~~~------~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          135 ----IAIENASMVVL--NFTLQFLEP------SERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             ----CCCCSEEEEEE--ESCGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----cccccccccee--eeeeeecCc------hhHhHHHHHHHHHcCCCcEEEEEec
Confidence                22223334444  457899864      2356677766 779998 4556664
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Back     alignment and structure
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query547
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 97.14
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.14
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.72
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 95.89
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 95.88
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 95.78
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 95.56
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.2
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 94.78
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 94.29
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 93.7
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 93.5
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 93.28
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 92.57
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 92.18
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 92.16
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 90.41
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 90.35
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 89.4
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 88.68
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 88.49
d1g6q1_328 Arginine methyltransferase, HMT1 {Baker's yeast (S 80.15
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.14  E-value=0.0012  Score=62.08  Aligned_cols=114  Identities=20%  Similarity=0.278  Sum_probs=66.3

Q ss_pred             HHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-
Q 008988          272 NVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-  350 (547)
Q Consensus       272 NqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-  350 (547)
                      ...|++++.=.+.=+|+|+|.|.|.    +...|+++-   |.+++|++|.+.       .++.+.++    ++..|+. 
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~----~~~~la~~~---p~~~~~~~D~~~-------~~~~a~~~----~~~~~~~~  130 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGG----FAAAIARRA---PHVSATVLEMAG-------TVDTARSY----LKDEGLSD  130 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSH----HHHHHHHHC---TTCEEEEEECTT-------HHHHHHHH----HHHTTCTT
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCH----HHHHHHHhc---ceeEEEEccCHH-------HHHHHHHH----HHHhhccc
Confidence            3566666543333479999999985    334455543   678999999653       24444444    3445554 


Q ss_pred             -eEEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcE-EEEEec
Q 008988          351 -FEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKV-VTLVEQ  418 (547)
Q Consensus       351 -FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pkv-vtlvEq  418 (547)
                       ++|..-  +..       ...++.+=+|-+...|||++|+      ....+|+.+ +.|+|.= ++++|.
T Consensus       131 rv~~~~~--D~~-------~~~~~~~D~v~~~~vlh~~~d~------~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         131 RVDVVEG--DFF-------EPLPRKADAIILSFVLLNWPDH------DAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             TEEEEEC--CTT-------SCCSSCEEEEEEESCGGGSCHH------HHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             chhhccc--cch-------hhcccchhheeeccccccCCch------hhHHHHHHHHHhcCCCcEEEEEec
Confidence             555442  211       1122334445566789999763      133566655 7799984 556664
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure