Citrus Sinensis ID: 009014

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540------

MVLAILRIKHHDPSVISLLMLIFTTGSGGKWIVFAEASGGGGGGGGGGFWYPAVLTTNVGLAIAVTAMAGLALAATVLYSHRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI

cEEEEcccccccHHHHHHHHEEccccccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHc

cEEEEEEEEcccHHHHHHHHHHEcHHHHcHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcEccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEHHHHHEHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcc

MVLAILRIKHHDPSVISLLMLIFTTGSGGKWIVFAeasggggggggggfwyPAVLTTNVGLAIAVTAMAGLALAATVLYShrgslkspwsrrrrkhallpkqwktfftpdgklsegGVKFLKKVrsggvdpsiraeVWPFLLGVydlksskeerDSVKAEKRKEYENLRKECRKIIHRYEKssklkettgkssnedsgdlsqvfdspgledeassrrsvssdggspvaedldhpvydqspecsgllegederdksvltcedasagdtestdsdssedlenipllsvegaearhenpkessslskadgnskfytdedfATWQRIIRLDAvransewtiyspsQAAVSEMKAQRSAQIvglkdydhlepsriYHAARLEDHEAFWCFAGFMKKarhnfrldevgIRRQLSIVSKIIKCKDNHLYRHLeqlqaedcFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSawgrmrlrapptddLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI

MVLAILRIKHHDPSVISLLMLIFTTGSGGKWIVFAEASGGGGGGGGGGFWYPAVLTTNVGLAIAVTAMAGLALAATVLYSHrgslkspwsrrrrkhallpkqwktfftpdgklsegGVKFLKKvrsggvdpsiraevwpFLLGvydlksskeerdsvkaekrkeyenlrKECRKIIhryekssklkettgkssnedsgdlsqVFDSPGledeassrrsvssdggspvaedldhpvydQSPECSGLLEGEDERDKSVLTCEdasagdtestdsdssedleNIPLLSvegaearhenpkessslskadgnsKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI

MVLAILRIKHHDPSVISLLMLIFTTGSGGKWIVFAEASggggggggggFWYPAVLTTNVGlaiavtamaglalaatvlYSHRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEAssrrsvssdggsPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTCEdasagdtestdsdssedLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI

************************************************FWYPAVLTTNVGLAIAVTAMAGLALAATVLYSHRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDL*******************************************************************************************************************************************************************FYTDEDFATWQRIIRLDAVRANSEWTIYSP*************AQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLH***

*********HHDPSVISLLMLIFTTGSGGKWIVFAEAS******G********************************************************QWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKSSKLKETTGKSSNEDSGDLSQ***********SSRRSVSSDGG**************************ERDKSVLTCEDASAG*******************************************SKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAI****************PPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI

MVLAILRIKHHDPSVISLLMLIFTTGSGGKWIVFAEASGGGGGGGGGGFWYPAVLTTNVGLAIAVTAMAGLALAATVLYSHRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKS*************KEYENLRKECRKIIHRYEKSS****************LSQVFD**********************AEDLDHPVYDQSPECSGLLEGEDERDKSVLTCE******************ENIPLLSVEG*****************DGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQ***********AQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI

MVLAILRIKHHDPSVISLLMLIFTTGSGGKWIVFAEASGGGGGGGGGGFWYPAVLTTNVGLAIAVTAMAGLALAATVLYSHRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKS*******************************************************************************************************************************KFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MVLAILRIKHHDPSVISLLMLIFTTGSGGKWIVFAEASGGGGGGGGGGFWYPAVLTTNVGLAIAVTAMAGLALAATVLYSHRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		546	2.2.26 [Sep-21-2011]
P09379		730	GTPase-activating protein	yes	no	0.249	0.186	0.282	2e-17
Q6BU76		757	GTPase-activating protein	yes	no	0.267	0.192	0.259	3e-15
Q9UUH7		743	GTPase-activating protein	yes	no	0.230	0.169	0.280	1e-13
O43147		1006	Small G protein signaling	yes	no	0.714	0.387	0.228	2e-13
Q6FWI1		745	GTPase-activating protein	yes	no	0.289	0.212	0.232	2e-13
Q80U12		1005	Small G protein signaling	yes	no	0.716	0.389	0.233	3e-13
Q8TC07		691	TBC1 domain family member	no	no	0.243	0.192	0.261	8e-13
Q9CXF4		671	TBC1 domain family member	no	no	0.261	0.213	0.245	3e-12
P48365		746	GTPase-activating protein	yes	no	0.254	0.186	0.25	1e-11
Q3MII6		688	TBC1 domain family member	no	no	0.155	0.123	0.333	4e-09

>sp\|P09379\|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2	Back alignment and function desciption

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 84/156 (53%), Gaps = 20/156 (12%)

Query: 377 EDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFV 436
           +D  AFW F+ FM++   N+  D+ G+R QL  +  +++     LY+HLE+ ++ + FF 
Sbjct: 532 DDTLAFWAFSAFMERMERNYLRDQSGMRNQLLCLDHLVQFMLPSLYKHLEKTESTNLFFF 591

Query: 437 YRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAA 496
           +RM++V F+REL ++  L LWEV+W D                      +   +L+   A
Sbjct: 592 FRMLLVWFKRELLWDDVLRLWEVLWTDYL--------------------SSQFVLFVCLA 631

Query: 497 CVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLL 532
            + + + ++I+  +  DEI++  N ++  +D+ +LL
Sbjct: 632 ILDKHKDVMIDHLAGFDEILKYMNELSMTIDLDELL 667

Most effectively accelerate the intrinsic GTPase activity of YPT7. It is also active, but to a lesser extent, on YPT31, YPT32 and YPT1. YPT6 and SEC4.
Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp\|Q6BU76\|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2	Back alignment and function description

>sp\|Q9UUH7\|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1	Back alignment and function description

>sp\|O43147\|SGSM2_HUMAN Small G protein signaling modulator 2 OS=Homo sapiens GN=SGSM2 PE=1 SV=4	Back alignment and function description

>sp\|Q6FWI1\|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1	Back alignment and function description

>sp\|Q80U12\|SGSM2_MOUSE Small G protein signaling modulator 2 OS=Mus musculus GN=Sgsm2 PE=2 SV=2	Back alignment and function description

>sp\|Q8TC07\|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2	Back alignment and function description

>sp\|Q9CXF4\|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1	Back alignment and function description

>sp\|P48365\|GYP7_YEAST GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP7 PE=1 SV=1	Back alignment and function description

>sp\|Q3MII6\|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		546
359474146		591	PREDICTED: GTPase-activating protein gyp	0.963	0.890	0.689	0.0
225426598		554	PREDICTED: GTPase-activating protein gyp	0.862	0.850	0.700	0.0
225455270		539	PREDICTED: small G protein signaling mod	0.902	0.914	0.632	0.0
255555739		554	conserved hypothetical protein [Ricinus	0.822	0.810	0.626	1e-175
42568257		549	RabGAP/TBC domain-containing protein [Ar	0.930	0.925	0.596	1e-173
356516109		550	PREDICTED: GTPase-activating protein gyp	0.835	0.829	0.63	1e-172
255554359		544	conserved hypothetical protein [Ricinus	0.875	0.878	0.608	1e-171
225455274		549	PREDICTED: small G protein signaling mod	0.831	0.826	0.637	1e-170
225455272		546	PREDICTED: small G protein signaling mod	0.831	0.831	0.637	1e-169
356552733		558	PREDICTED: GTPase-activating protein gyp	0.908	0.888	0.583	1e-166

>gi\|359474146\|ref\|XP_002280252.2\| PREDICTED: GTPase-activating protein gyp7-like isoform 3 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/576 (68%), Positives = 460/576 (79%), Gaps = 50/576 (8%)

Query: 18  LLMLIFTTGSGGK--WIVFAEASGGGGGGGGGG----------FWYPAVLTTNVGLAIAV 65
           LL++IF +G  G+  WIVFA+ S GGGGG GG           FW  +   +NVG+AIAV
Sbjct: 19  LLLMIFFSGGDGRRSWIVFAQGSSGGGGGSGGRSVGLIGGGGGFW-ASTAPSNVGIAIAV 77

Query: 66  TAMAGLALAATVLYSHRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVR 125
           TAMAGLALAATV+Y+ RG+LKSPWSRRRRKHALL KQWK+ FTPDGK ++GGVKFLKKVR
Sbjct: 78  TAMAGLALAATVVYTRRGTLKSPWSRRRRKHALLAKQWKSLFTPDGKFTDGGVKFLKKVR 137

Query: 126 SGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKSSKL 185
           SGGVDPSIR EVWPFLLGVYD+KSS+EERDS++A+KRKEYENLRK+CR+I+ + + S KL
Sbjct: 138 SGGVDPSIRVEVWPFLLGVYDVKSSREERDSIRAQKRKEYENLRKQCRRILKQSDTSIKL 197

Query: 186 KETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECS-G 244
           +ETTG  SN+DS + SQV DS G ED  S+R S S++GG+P  ED  HPV +  P+ S  
Sbjct: 198 RETTGSCSNQDSEEFSQVLDSSGSEDVVSARLSHSTEGGTPEEEDSVHPVCNVGPQTSDS 257

Query: 245 LLEGEDERDKSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARH--ENPKESSSL 302
           LLEG+ E  KS LTCEDASA  ++S+DSDSS ++++IPL + EG E     ++ KE+SS 
Sbjct: 258 LLEGDGE--KSGLTCEDASASYSDSSDSDSSGEIDSIPLFAAEGTEENDLGDHAKENSSP 315

Query: 303 SKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDY 362
           S+ +  SK   +EDFATWQRIIRLDAVRAN+EW IYSPSQAAVSE+KA+R A+ VGLKDY
Sbjct: 316 SETESGSKLRMNEDFATWQRIIRLDAVRANAEWIIYSPSQAAVSEIKARRFAESVGLKDY 375

Query: 363 DHLEPSRIYHAARL--------------------------------EDHEAFWCFAGFMK 390
           DHLEP RI+HAARL                                EDH+AFWCF G+MK
Sbjct: 376 DHLEPCRIFHAARLVAILEAYALYDSEIGYCQGMSDLLSPIISVMEEDHDAFWCFVGYMK 435

Query: 391 KARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTF 450
           KARHNFRLDEVGIRRQLSIVSKIIKCKD+HLYRHLE+LQAEDCFFVYRMVVVLFRREL+F
Sbjct: 436 KARHNFRLDEVGIRRQLSIVSKIIKCKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSF 495

Query: 451 EQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYS 510
           EQTLCLWEV+WADQAA+RAGIAKS WGR+RLRAPPTDDLLLYAIAACVLQRRKLIIEKYS
Sbjct: 496 EQTLCLWEVMWADQAAVRAGIAKSTWGRIRLRAPPTDDLLLYAIAACVLQRRKLIIEKYS 555

Query: 511 SMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI 546
           SMDEI+RECNSMAGHLDVWKLLDDAHDLVVTLH K+
Sbjct: 556 SMDEIIRECNSMAGHLDVWKLLDDAHDLVVTLHDKV 591

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225426598\|ref\|XP_002280223.1\| PREDICTED: GTPase-activating protein gyp7-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225455270\|ref\|XP_002273781.1\| PREDICTED: small G protein signaling modulator 2-like isoform 3 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255555739\|ref\|XP_002518905.1\| conserved hypothetical protein [Ricinus communis] gi\|223541892\|gb\|EEF43438.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|42568257\|ref\|NP_199009.2\| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi\|51971014\|dbj\|BAD44199.1\| GTPase activator protein of Rab-like small GTPases-like protein [Arabidopsis thaliana] gi\|332007362\|gb\|AED94745.1\| RabGAP/TBC domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356516109\|ref\|XP_003526739.1\| PREDICTED: GTPase-activating protein gyp7-like [Glycine max]	Back alignment and taxonomy information

>gi\|255554359\|ref\|XP_002518219.1\| conserved hypothetical protein [Ricinus communis] gi\|223542624\|gb\|EEF44162.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|225455274\|ref\|XP_002273720.1\| PREDICTED: small G protein signaling modulator 2-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225455272\|ref\|XP_002273689.1\| PREDICTED: small G protein signaling modulator 2-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356552733\|ref\|XP_003544717.1\| PREDICTED: GTPase-activating protein gyp7-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		546
TAIR\|locus:2165710		549	AT5G41940 [Arabidopsis thalian	0.311	0.309	0.870	3e-152
TAIR\|locus:2082901		539	AT3G49350 [Arabidopsis thalian	0.311	0.315	0.847	1.7e-135
TAIR\|locus:2168591		577	AT5G53570 [Arabidopsis thalian	0.309	0.292	0.829	1.5e-132
TAIR\|locus:2152901		528	AT5G24390 [Arabidopsis thalian	0.311	0.321	0.777	1e-125
TAIR\|locus:2121353		424	AT4G28550 [Arabidopsis thalian	0.304	0.391	0.331	6.8e-30
TAIR\|locus:2038922		425	AT2G20440 [Arabidopsis thalian	0.157	0.202	0.431	2.2e-29
TAIR\|locus:2097573		720	AT3G59570 [Arabidopsis thalian	0.157	0.119	0.397	1.9e-28
TAIR\|locus:2058228		745	AT2G43490 [Arabidopsis thalian	0.157	0.115	0.397	1.6e-27
TAIR\|locus:2160145		432	AT5G54780 [Arabidopsis thalian	0.159	0.201	0.444	4e-27
TAIR\|locus:2136442		436	AT4G27100 [Arabidopsis thalian	0.159	0.199	0.444	1e-26

TAIR\|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 782 (280.3 bits), Expect = 3.0e-152, Sum P(3) = 3.0e-152
 Identities = 148/170 (87%), Positives = 156/170 (91%)

Query:   377 EDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFV 436
             +D  AFWCF GFM KARHNFRLDEVGIRRQLS+VSKIIK KD HLYRHLE L+AEDCFFV
Sbjct:   380 DDVLAFWCFVGFMSKARHNFRLDEVGIRRQLSMVSKIIKFKDIHLYRHLENLEAEDCFFV 439

Query:   437 YRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAA 496
             YRMVVVLFRRELTFEQTLCLWEV+WADQAAIR GIAK+ WGR+RLRAPPT+DLLLYAIAA
Sbjct:   440 YRMVVVLFRRELTFEQTLCLWEVMWADQAAIRTGIAKATWGRIRLRAPPTEDLLLYAIAA 499

Query:   497 CVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI 546
              VLQRRK IIEKYS MDEIM+ECNSMAGHLDVWKLLDDAHDLVV LH KI
Sbjct:   500 SVLQRRKTIIEKYSGMDEIMKECNSMAGHLDVWKLLDDAHDLVVNLHDKI 549

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

TAIR\|locus:2082901 AT3G49350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2168591 AT5G53570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2152901 AT5G24390 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		546
smart00164		216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	3e-13
pfam00566		206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	8e-13
COG5210		496	COG5210, COG5210, GTPase-activating protein [Gener	3e-06

>gnl\|CDD\|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p	Back alignment and domain information

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 377 EDHEAFWCFAGFMKKARHNFRLDEV-GIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFF 435
           ++ +AFWC    M++   NF L ++ G++  L  + +++K  D  LY+HL+ L      +
Sbjct: 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPSLY 167

Query: 436 VYRMVVVLFRRELTFEQTLCLWEVIWAD 463
             R  + LF REL  E  L +W+V++A+
Sbjct: 168 ALRWFLTLFARELPLEIVLRIWDVLFAE 195

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl\|CDD\|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	Back alignment and domain information

>gnl\|CDD\|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		546
KOG2224		781	consensus Uncharacterized conserved protein, conta	100.0
KOG2197		488	consensus Ypt/Rab-specific GTPase-activating prote	100.0
KOG1092		484	consensus Ypt/Rab-specific GTPase-activating prote	100.0
KOG4567		370	consensus GTPase-activating protein [General funct	100.0
smart00164		199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	99.97
COG5210		496	GTPase-activating protein [General function predic	99.96
KOG2058		436	consensus Ypt/Rab GTPase activating protein [Intra	99.96
PF00566		214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	99.95
KOG2223		586	consensus Uncharacterized conserved protein, conta	99.92
KOG1091		625	consensus Ypt/Rab-specific GTPase-activating prote	99.89
KOG2222		848	consensus Uncharacterized conserved protein, conta	99.86
KOG1093		725	consensus Predicted protein kinase (contains TBC a	99.82
KOG4436		948	consensus Predicted GTPase activator NB4S/EVI5 (co	99.78
KOG2595		395	consensus Predicted GTPase activator protein [Sign	99.64
KOG1102		397	consensus Rab6 GTPase activator GAPCenA and relate	99.61
KOG4347		671	consensus GTPase-activating protein VRP [General f	99.54
KOG2197		488	consensus Ypt/Rab-specific GTPase-activating prote	99.38
KOG3636		669	consensus Uncharacterized conserved protein, conta	99.3
KOG1648		813	consensus Uncharacterized conserved protein, conta	99.1
KOG2221		267	consensus PDZ-domain interacting protein EPI64, co	98.93
KOG4436		948	consensus Predicted GTPase activator NB4S/EVI5 (co	98.61
KOG2224		781	consensus Uncharacterized conserved protein, conta	98.55
KOG2801		559	consensus Probable Rab-GAPs [Intracellular traffic	94.33
PF14961		1296	BROMI: Broad-minded protein	93.31

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=1.9e-49  Score=407.36  Aligned_cols=313  Identities=24%  Similarity=0.445  Sum_probs=249.4

Q ss_pred             cCCCCCHHHHhh-ccCCCCcccchhHHHHHHhhcCCCCcchhhhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009014           94 RKHALLPKQWKT-FFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKEC  172 (546)
Q Consensus        94 r~~pls~~~W~~-~~d~dGrl~~~~~~l~~~If~gGi~pslR~eVW~fLLGvy~~~sT~~ER~~~~~~kr~eY~~lk~qw  172 (546)
                      ..+.++...|.. .+++-|.|.+. .++||.||+|||+-++|++||||||.+|.+.||.++|+.++..||+||+++.++-
T Consensus       401 ~~kki~~n~~~~t~lne~gqiedd-~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkr  479 (781)
T KOG2224|consen  401 DVKKIGTNAFLGTHLNEKGQIEDD-LKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKR  479 (781)
T ss_pred             hhhhhhHHHHHHhhhhhcccchhH-HHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            456677778876 89999999987 7899999999999999999999999999999999999999999999999997644


Q ss_pred             -HHhhhhcccccccccccCCCCCCCCCCcccccCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCc
Q 009014          173 -RKIIHRYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDE  251 (546)
Q Consensus       173 -~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~DV~rtdr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~dd~  251 (546)
                       ++|.+++.-                 .||+....+.+|||.||||+                        +.||-|||+
T Consensus       480 lysmspeeh~-----------------~fwknvq~tvdkdvvrtdrn------------------------n~ff~gddn  518 (781)
T KOG2224|consen  480 LYSMSPEEHI-----------------AFWKNVQFTVDKDVVRTDRN------------------------NPFFCGDDN  518 (781)
T ss_pred             hhcCCHHHHH-----------------HHHhheEEEEecceeeccCC------------------------CCcccCCCC
Confidence             478776432                 35655667789999999997                        578989888


Q ss_pred             ccccccccccCCCCCCCCCCCCCCcccccccccccccccccCCCCcccccccccCCCCCCCChhhHHHHHHHHHHhhhhc
Q 009014          252 RDKSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRA  331 (546)
Q Consensus       252 ~~t~~l~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~l~~l~~~I~~Dv~RT  331 (546)
                      |++                                                               +.+++|+.      
T Consensus       519 pn~---------------------------------------------------------------e~mk~ill------  529 (781)
T KOG2224|consen  519 PNT---------------------------------------------------------------ESMKNILL------  529 (781)
T ss_pred             CcH---------------------------------------------------------------HHHHHHHH------
Confidence            774                                                               23344443      


Q ss_pred             CCCCccCCcchhhhh---hhhh--------------ccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHhchh
Q 009014          332 NSEWTIYSPSQAAVS---EMKA--------------QRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARH  394 (546)
Q Consensus       332 ~p~~~~f~~~~~~v~---~~~~--------------~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~~~~  394 (546)
                        +++.|++..+|-+   .+-+              .-+|..|||+  |+++|+|.-+   ++|.|+||||++||.+.-.
T Consensus       530 --n~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgms--dlvapilaev---ldesdtfwcfvglmqna~f  602 (781)
T KOG2224|consen  530 --NFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMS--DLVAPILAEV---LDESDTFWCFVGLMQNAFF  602 (781)
T ss_pred             --hheeecccccccccchhhcchhhhhhccccchhhhhhhhhccch--hhhhhHHHhh---hccccchhhhhhhhcceEE
Confidence              3566665321110   0000              0134444444  3344444321   4777777777777765332


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCC--cccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccc
Q 009014          395 NFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAE--DCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIA  472 (546)
Q Consensus       395 ~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~--~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~  472 (546)
                      .-.+....|..++..|++||+.++|.+|+||+++|-+  .++||+||++++|+||||-..++|||+..|+++        
T Consensus       603 v~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~airiweacwa~y--------  674 (781)
T KOG2224|consen  603 VCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHY--------  674 (781)
T ss_pred             EeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh--------
Confidence            2344556788999999999999999999999999865  479999999999999999999999999999998        


Q ss_pred             cccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhh
Q 009014          473 KSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHA  544 (546)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~lDv~~lL~~A~~L~~~~~~  544 (546)
                                  .++.|++|+|+||+-.+.+..+.+....|++|-+|.+|+++||-+-+|++|+.|.++|+.
T Consensus       675 ------------~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgelilrkar~ll~qfr~  734 (781)
T KOG2224|consen  675 ------------LTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELILRKARGLLHQFRL  734 (781)
T ss_pred             ------------hHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhHHHHHHHHHHHhh
Confidence                        367999999999999999999988899999999999999999999999999999999864

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4567 consensus GTPase-activating protein [General function prediction only]	Back alignment and domain information

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p	Back alignment and domain information

>COG5210 GTPase-activating protein [General function prediction only]	Back alignment and domain information

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []	Back alignment and domain information

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]	Back alignment and domain information

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]	Back alignment and domain information

>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]	Back alignment and domain information

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]	Back alignment and domain information

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]	Back alignment and domain information

>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]	Back alignment and domain information

>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]	Back alignment and domain information

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14961 BROMI: Broad-minded protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		546
2g77_A		410	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		6e-06
1fkm_A		396	Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p		5e-05
2qfz_A		345	Crystal Structure Of Human Tbc1 Domain Family Membe		3e-04
3dzx_A		346	Crystal Structure Of The Rabgap Domain Of Human Tbc		5e-04

>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410

Back alignment and structure

Iteration: 1

Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%) Query: 366 EPSRIYHAARLEDHEA--FWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYR 423 +PS ++ D EA FWC +++ N+ + GI RQ+ +S+++K D LY Sbjct: 181 DPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYN 240 Query: 424 HLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEV 459 H + E F +R + L RE + +W+ Sbjct: 241 HFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDT 276

PyMOL of 2g77

>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396

Back alignment and structure

>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345

Back alignment and structure

>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		546
2qfz_A		345	TBC1 domain family member 22A; RAB-GAP, GTPase act	1e-25
2qfz_A		345	TBC1 domain family member 22A; RAB-GAP, GTPase act	3e-09
1fkm_A		396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	3e-24
1fkm_A		396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	2e-10
3qwl_A		294	TBC1 domain family member 7; RAB GTPase activation	8e-16
3qwl_A		294	TBC1 domain family member 7; RAB GTPase activation	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
2qq8_A		334	TBC1 domain family member 14; structural genomics	2e-05
2qq8_A		334	TBC1 domain family member 14; structural genomics	3e-04

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345	Back alignment and structure

 Score =  106 bits (267), Expect = 1e-25
 Identities = 32/164 (19%), Positives = 70/164 (42%), Gaps = 24/164 (14%)

Query: 379 HEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYR 438
            + +WC +  +   + N+   + GI+ ++ ++ +++   D  ++RHL+Q +     F +R
Sbjct: 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFR 248

Query: 439 MVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACV 498
            +  L  RE+    T+ LW+   ++                           LY  AA +
Sbjct: 249 WMNNLLMREVPLRCTIRLWDTYQSE-------------------PDGFSHFHLYVCAAFL 289

Query: 499 LQRRKLIIEKYSSMDEIMRECNSMAGH----LDVWKLLDDAHDL 538
           ++ RK I+E+     E++    ++        D+  LL +A+ L
Sbjct: 290 VRWRKEILEE-KDFQELLLFLQNLPTAHWDDEDISLLLAEAYRL 332

PyMOL of 2qfz

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345	Back alignment and structure

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396	Back alignment and structure

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396	Back alignment and structure

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294	Back alignment and structure

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334	Back alignment and structure

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		546
1fkm_A		396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	100.0
2qfz_A		345	TBC1 domain family member 22A; RAB-GAP, GTPase act	100.0
2qq8_A		334	TBC1 domain family member 14; structural genomics	100.0
3qye_A		331	TBC1 domain family member 1; rabgap, RAB, myocytes	100.0
3hzj_A		310	Rabgap1L, RAB GTPase-activating protein 1-like; st	100.0
4hl4_A		292	TBC1 domain family member 20; rabgap, RAB1B, hydro	100.0
3qwl_A		294	TBC1 domain family member 7; RAB GTPase activation	100.0

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*	Back alignment and structure

Probab=100.00  E-value=8.4e-46  Score=393.59  Aligned_cols=299  Identities=18%  Similarity=0.304  Sum_probs=232.1

Q ss_pred             HHHHhhccCCCCcccchhHHHHHHhhcCCCCcchhhhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009014          100 PKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRY  179 (546)
Q Consensus       100 ~~~W~~~~d~dGrl~~~~~~l~~~If~gGi~pslR~eVW~fLLGvy~~~sT~~ER~~~~~~kr~eY~~lk~qw~~~~~~~  179 (546)
                      .++|.++++.++.+. . +++|+.++ +||++++|++||++|||++|++++  +|+...++++.+|..++++|...    
T Consensus         8 ~~kw~~lL~~~~~~d-~-~~Lr~l~~-~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~----   78 (396)
T 1fkm_A            8 ISKFDNILKDKTIIN-Q-QDLRQISW-NGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSD----   78 (396)
T ss_dssp             HHHHHHHHSSCSBCC-H-HHHHHHHT-TCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSS----
T ss_pred             HHHHHHHHcCCCCCC-H-HHHHHHHH-cCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhc----
Confidence            578999998765343 2 57777655 799999999999999999999865  78899999999999999876310    


Q ss_pred             ccccccccccCCCCCCCCCCcccccCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccc
Q 009014          180 EKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTC  259 (546)
Q Consensus       180 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~DV~rtdr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~dd~~~t~~l~~  259 (546)
                                                           .+                            +            
T Consensus        79 -------------------------------------~~----------------------------~------------   81 (396)
T 1fkm_A           79 -------------------------------------QH----------------------------S------------   81 (396)
T ss_dssp             -------------------------------------SC----------------------------S------------
T ss_pred             -------------------------------------cC----------------------------c------------
Confidence                                                 00                            0            


Q ss_pred             ccCCCCCCCCCCCCCCcccccccccccccccccCCCCcccccccccCCCCCCCChhhHHHHHHHHHHhhhhcCCCCccCC
Q 009014          260 EDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYS  339 (546)
Q Consensus       260 ~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~l~~l~~~I~~Dv~RT~p~~~~f~  339 (546)
                                                                             .+ ....+||++||.||+|++.+|.
T Consensus        82 -------------------------------------------------------~~-~~~~~qI~~Dv~RT~p~~~~F~  105 (396)
T 1fkm_A           82 -------------------------------------------------------RD-IPTWHQIEIDIPRTNPHIPLYQ  105 (396)
T ss_dssp             -------------------------------------------------------TH-HHHHHHHHHHGGGSSTTSGGGG
T ss_pred             -------------------------------------------------------cc-HHHHHHHHHHhhhhCCCccccc
Confidence                                                                   00 0123689999999999999997


Q ss_pred             cchhhhhhh--------hhccccccccCChhhhhhhHHHHhhcc------------------cc-------hHHHHHHHH
Q 009014          340 PSQAAVSEM--------KAQRSAQIVGLKDYDHLEPSRIYHAAR------------------LE-------DHEAFWCFA  386 (546)
Q Consensus       340 ~~~~~v~~~--------~~~~igY~QGMnd~dllaP~L~y~~~~------------------ld-------E~dAFWcF~  386 (546)
                      ....+....        ..+++||||||+  ++++|++..+...                  ++       |++|||||+
T Consensus       106 ~~~~~~~L~rIL~aya~~np~iGY~QGmn--~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~  183 (396)
T 1fkm_A          106 FKSVQNSLQRILYLWAIRHPASGYVQGIN--DLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLT  183 (396)
T ss_dssp             SHHHHHHHHHHHHHHHHHCTTTCSCTTHH--HHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCcccCcH--HHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHH
Confidence            543322221        134899999999  5799987543210                  12       999999999


Q ss_pred             HHHHhchhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhh
Q 009014          387 GFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAA  466 (546)
Q Consensus       387 ~lM~~~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~  466 (546)
                      +||++++++|..++.|++.++..+..||+..||+||+||+++++++.+|++|||+++|+|+||+++++||||++|++|..
T Consensus       184 ~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~  263 (396)
T 1fkm_A          184 KLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQ  263 (396)
T ss_dssp             HHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998810


Q ss_pred             hh-----------hccccccccccccCC--------------------C----------CCCcHHHHHHHHHHHHHHHHH
Q 009014          467 IR-----------AGIAKSAWGRMRLRA--------------------P----------PTDDLLLYAIAACVLQRRKLI  505 (546)
Q Consensus       467 ~~-----------~g~~~~~~~~~~~~~--------------------~----------~~~~~~lfi~aAiLl~~r~~I  505 (546)
                      ..           ++-...+-..+....                    +          +...+++|+|+|+|+.+|+.|
T Consensus       264 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~L  343 (396)
T 1fkm_A          264 EVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQL  343 (396)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHHHHHHHHTHHHH
T ss_pred             cccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHH
Confidence            00           000000000000000                    0          113789999999999999999


Q ss_pred             HhhCCCHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHhhh
Q 009014          506 IEKYSSMDEIMRECNSMAGH----LDVWKLLDDAHDLVVTLHA  544 (546)
Q Consensus       506 L~~~~~fdeiL~~ln~L~~~----lDv~~lL~~A~~L~~~~~~  544 (546)
                      |+  ++|++++++|++++..    .|++.+|..|..+...+++
T Consensus       344 l~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~  384 (396)
T 1fkm_A          344 ME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKD  384 (396)
T ss_dssp             TT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred             Hh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhc
Confidence            97  7999999999999864    5999999999988887764

PyMOL of 1fkm

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A	Back alignment and structure

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}	Back alignment and structure

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A	Back alignment and structure

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}	Back alignment and structure

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*	Back alignment and structure

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		546
d1fkma2		188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	3e-14
d1fkma1		194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	3e-04

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188	Back information, alignment and structure


class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (168), Expect = 3e-14
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 402 GIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIW 461
           GI RQ+  +S+++K  D  LY H +    E   F +R +  L  RE      + +W+   
Sbjct: 4   GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 63

Query: 462 AD 463
           ++
Sbjct: 64  SE 65

PyMOL of d1fkma2

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		546
d1fkma1		194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.9
d1fkma2		188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.87

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.4e-24  Score=204.76  Aligned_cols=65  Identities=18%  Similarity=0.380  Sum_probs=52.4

Q ss_pred             HHHhhccCCCCcccchhHHHHHHhhcCCCCcchhhhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009014          101 KQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRK  170 (546)
Q Consensus       101 ~~W~~~~d~dGrl~~~~~~l~~~If~gGi~pslR~eVW~fLLGvy~~~sT~~ER~~~~~~kr~eY~~lk~  170 (546)
                      ++|..++++. .+.+. +++|+.+ ++||++++|+.||++|||+||.+++  +++....+++++|..+++
T Consensus         8 ~~~~~~l~~~-~~i~~-~~lr~l~-~~Gip~~lR~~vW~~llg~~~~~~~--~~~~~~~~~~~~y~~~~~   72 (194)
T d1fkma1           8 SKFDNILKDK-TIINQ-QDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLK   72 (194)
T ss_dssp             HHHHHHHSSC-SBCCH-HHHHHHH-TTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccc-CCCCH-HHHHHHH-HcCCChHHHHHHHHHHHhhcCCchh--hHHHHHHHHhhhhhhhhh
Confidence            5789988754 44444 6788766 5799999999999999999999987  667778888999987654

PyMOL of d1fkma1

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure