Citrus Sinensis ID: 009041

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540------
MLRLINSSGGSLRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPAMVILVLDTACRLRRTCSIGSNFTLLQVFYCISQILRGHEFFIALHNFTSHALQCKTC
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccEEEcccEEEEccccHHHHHHHHHHHccccccccccEEEEEcccEEcccccccccHHHHHHHHHHcEEEEccccccccHHHHHHccccccccccccHHHHHccEEEEccEEEcccccccccccccEEEEEcccccccccccEEEccccEEEEEEEcccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHcccccccccEEEcccccEEEEccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHcccccccEEEEEEEEEHHcEEcccEEEEEEEcccccccccccc
cccEEcccHHHHHHcccccccccccccccccHHHccccHccccccccHHHccccccccccccccHHHHHHHccccHHHHHcEEccccEEEEEccHHHHHHHHHHHHHcccccEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccHHHHHHHHHccEEEEEEccccccccccccccccEEEEEEcccHHHHcEEEEEcccEEEEEEEEEccccccEEEEEEEEcccEEEEEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHccccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHccHHcccccc
mlrlinssggslrssamspaaaTTKMMSsstvavknprwslcssnnsglfsghvnnrvsfrnqlapamsfrcfasatgidrvkvqnpivemdgdEMTRIIWQMIKDKlifpyldldikyydlgilnrdatddkvTVESAEATLKYNVAIkcatitpdetrmkefglksmwrspngtirnilngtvfrepilcqniprivpgwkkpicigrhafgdqyratdtvikgpgklkmvfdpedgtgpveldvynfkgPGIALAMYNVDESIRAFAESSMslafskkwplylsTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVwacknydgdvqSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAhgtvtrhfrlhqkgqetstNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAIlvhgpkvsrefYLNTEEFIDAVATNLGAKLREPAMVILVLDTACRLrrtcsigsnftLLQVFYCISQILRGHEFFIALHNftshalqcktc
mlrlinssggslrssaMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASatgidrvkvqnpivemdgDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESaeatlkynvaikcatitpdetrMKEFglksmwrspngtIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSlafskkwplYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGtvtrhfrlhqkgqetstnsIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPAMVILVLDTACRLRRTCSIGSNFTLLQVFYCISQILRGHEFFIALHNFtshalqcktc
MLRLINssggslrssamsPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPAMVILVLDTACRLRRTCSIGSNFTLLQVFYCISQILRGHEFFIALHNFTSHALQCKTC
**************************************WSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLH********NSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPAMVILVLDTACRLRRTCSIGSNFTLLQVFYCISQILRGHEFFIALHNFTSHALQC***
**********************************************************************************KVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGL**MWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPAMVILVLDTACRLRRTCSIGSNFTLLQVFYCISQILRGHEFFIALHNFTSHALQCKT*
*********************************VKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPAMVILVLDTACRLRRTCSIGSNFTLLQVFYCISQILRGHEFFIALHNFTSHALQCKTC
***********************************************GL*S**VNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPAMVILVLDTACRLRRTCSIGSNFTLLQVFYCISQILRGHEFFIALHNFTSHALQCKTC
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
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MLRLINSSGGSLRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPAMVILVLDTACRLRRTCSIGSNFTLLQVFYCISQILRGHEFFIALHNFTSHALQCKTC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query546 2.2.26 [Sep-21-2011]
Q40345433 Isocitrate dehydrogenase N/A no 0.774 0.976 0.767 0.0
P50218415 Isocitrate dehydrogenase N/A no 0.745 0.980 0.794 0.0
P50217416 Isocitrate dehydrogenase N/A no 0.741 0.973 0.803 0.0
Q06197413 Isocitrate dehydrogenase no no 0.741 0.980 0.800 0.0
Q04467452 Isocitrate dehydrogenase yes no 0.741 0.896 0.670 1e-170
Q4R502452 Isocitrate dehydrogenase N/A no 0.741 0.896 0.668 1e-168
P48735452 Isocitrate dehydrogenase yes no 0.741 0.896 0.668 1e-168
P56574452 Isocitrate dehydrogenase yes no 0.741 0.896 0.658 1e-167
P33198421 Isocitrate dehydrogenase yes no 0.760 0.985 0.649 1e-167
P54071452 Isocitrate dehydrogenase yes no 0.741 0.896 0.658 1e-167
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function desciption
 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/431 (76%), Positives = 371/431 (86%), Gaps = 8/431 (1%)

Query: 63  QLAPAMSFRCF-------ASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDL 115
           Q +P +SF  F        +  G  ++KV NPIVEMDGDEMTRIIW+ IKDKLIFP+++L
Sbjct: 1   QFSPNLSFSAFFPIITFTTATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVEL 60

Query: 116 DIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNG 175
           DIKY+DLG+  RD T+DKVTVESAEATLKYNVAIKCATITPDE R+KEFGLKSMWRSPNG
Sbjct: 61  DIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNG 120

Query: 176 TIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFD 235
           TIRNILNGTVFREPI+C+NIPR++PGW KPICIGRHAFGDQYRATD+VIKGPGKLK+VF 
Sbjct: 121 TIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFV 180

Query: 236 PEDGTGPVELDVYNFKGPG-IALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILK 294
           PE      +L+VYNF G G +ALAMYN DESIR+FAE+SM++A  KKWPLYLSTKNTILK
Sbjct: 181 PEGQGETTDLEVYNFTGEGGVALAMYNTDESIRSFAEASMAVALEKKWPLYLSTKNTILK 240

Query: 295 KYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQ 354
           KYDGRFKDIFQ+VYE  W+ K+E   IWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQ
Sbjct: 241 KYDGRFKDIFQEVYEAGWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQ 300

Query: 355 SDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWT 414
           SD LAQGFGSLGLMTSVL+  DGKT+EAEAAHGTVTRHFR+HQKG ETSTNSIASIFAWT
Sbjct: 301 SDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWT 360

Query: 415 RGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFI 474
           RGL HRAKLD N  LL F +KLEAACI  VE+GKMTKDLA+++HG K+SRE YLNTEEFI
Sbjct: 361 RGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFI 420

Query: 475 DAVATNLGAKL 485
           DAVA  L  K+
Sbjct: 421 DAVAAELKTKI 431

Medicago sativa (taxid: 3879)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Back     alignment and function description
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Back     alignment and function description
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 Back     alignment and function description
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 Back     alignment and function description
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 Back     alignment and function description
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query546
TAIR|locus:2222672485 AT5G14590 [Arabidopsis thalian 0.862 0.971 0.809 1.5e-209
TAIR|locus:2020128416 ICDH "isocitrate dehydrogenase 0.743 0.975 0.768 2.8e-176
TAIR|locus:2009759410 cICDH "cytosolic NADP+-depende 0.739 0.985 0.769 2.5e-175
UNIPROTKB|Q04467452 IDH2 "Isocitrate dehydrogenase 0.741 0.896 0.673 1.2e-154
UNIPROTKB|F1PAM3422 IDH2 "Isocitrate dehydrogenase 0.741 0.959 0.665 2.2e-153
UNIPROTKB|P48735452 IDH2 "Isocitrate dehydrogenase 0.741 0.896 0.670 2.8e-153
UNIPROTKB|Q4R502452 IDH2 "Isocitrate dehydrogenase 0.741 0.896 0.670 2.8e-153
RGD|1597139452 Idh2 "isocitrate dehydrogenase 0.741 0.896 0.660 1.5e-152
UNIPROTKB|F1SK00413 IDH2 "Isocitrate dehydrogenase 0.741 0.980 0.663 2.5e-152
UNIPROTKB|P33198421 IDH2 "Isocitrate dehydrogenase 0.741 0.961 0.663 2.5e-152
TAIR|locus:2222672 AT5G14590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2026 (718.2 bits), Expect = 1.5e-209, P = 1.5e-209
 Identities = 382/472 (80%), Positives = 425/472 (90%)

Query:    21 AATTKMMSSSTVAVKNPRWSLCSSNNSGLFS-GHVNNRVSFRNQLAPAMSFRCFASATGI 79
             A+ T M+SSST A  +  +      +SG+FS G   NRV+F  Q   A + RCFAS+ G 
Sbjct:    14 ASLTAMLSSSTSAGLSSSFVSSRFLSSGIFSSGASRNRVTFPVQFHRASAVRCFASSGGS 73

Query:    80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESA 139
             DR++VQNPIVEMDGDEMTR+IW MIK+KLI PYLDLDIKY+DLGILNRDATDDKVTVESA
Sbjct:    74 DRIQVQNPIVEMDGDEMTRVIWSMIKEKLILPYLDLDIKYFDLGILNRDATDDKVTVESA 133

Query:   140 EATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV 199
             EA LKYNVAIKCATITPDE R+KEFGLKSMWRSPNGTIRNIL+GTVFREPI+C NIPR+V
Sbjct:   134 EAALKYNVAIKCATITPDEGRVKEFGLKSMWRSPNGTIRNILDGTVFREPIMCSNIPRLV 193

Query:   200 PGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAM 259
             PGW+KPICIGRHAFGDQYRATDTVIKGPGKLKMVF PEDG  PVELDVY+FKGPG+ALAM
Sbjct:   194 PGWEKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALAM 253

Query:   260 YNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319
             YNVDESIRAFAESSM++A +KKWPLYLSTKNTILKKYDGRFKDIFQ+VYE  W+QKFEEH
Sbjct:   254 YNVDESIRAFAESSMAMALTKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKQKFEEH 313

Query:   320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKT 379
             SIWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLS+DGKT
Sbjct:   314 SIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSADGKT 373

Query:   380 LEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAA 439
             LE+EAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNE+L+ FV+KLE++
Sbjct:   374 LESEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEKLMDFVKKLESS 433

Query:   440 CIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPAMV 491
             C+  VETGKMTKDLA+L+HGPKVSR+ +LNTEEFIDAVA+ L  + +E  +V
Sbjct:   434 CVNTVETGKMTKDLALLIHGPKVSRDLFLNTEEFIDAVASKLKTQFKELPLV 485
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006102 "isocitrate metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=ISS
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2020128 ICDH "isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009759 cICDH "cytosolic NADP+-dependent isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q04467 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAM3 IDH2 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P48735 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R502 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
RGD|1597139 Idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SK00 IDH2 "Isocitrate dehydrogenase [NADP]" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P33198 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q04467IDHP_BOVIN1, ., 1, ., 1, ., 4, 20.67070.74170.8960yesno
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.62800.73440.9804yesno
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.62800.73440.9804yesno
P48735IDHP_HUMAN1, ., 1, ., 1, ., 4, 20.66830.74170.8960yesno
Q75JR2IDHP_DICDI1, ., 1, ., 1, ., 4, 20.66080.72520.9252yesno
P54071IDHP_MOUSE1, ., 1, ., 1, ., 4, 20.65840.74170.8960yesno
P21954IDHP_YEAST1, ., 1, ., 1, ., 4, 20.6250.76370.9742yesno
P33198IDHP_PIG1, ., 1, ., 1, ., 4, 20.64980.76000.9857yesno
Q40345IDHP_MEDSA1, ., 1, ., 1, ., 4, 20.76790.77470.9769N/Ano
P50217IDHC_SOLTU1, ., 1, ., 1, ., 4, 20.80340.74170.9735N/Ano
P50218IDHC_TOBAC1, ., 1, ., 1, ., 4, 20.79410.74540.9807N/Ano
P79089IDHP_ASPNG1, ., 1, ., 1, ., 4, 20.65530.74720.8192yesno
P56574IDHP_RAT1, ., 1, ., 1, ., 4, 20.65840.74170.8960yesno
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.62760.75640.9407yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.963
4th Layer1.1.1.420.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query546
PLN03065483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 0.0
PLN00103410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 0.0
PTZ00435413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 0.0
PRK08299402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 0.0
TIGR00127409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 0.0
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 1e-165
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 1e-95
PLN00096393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 3e-52
TIGR00169346 TIGR00169, leuB, 3-isopropylmalate dehydrogenase 1e-06
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 2e-06
TIGR02924473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 5e-06
PRK14025330 PRK14025, PRK14025, multifunctional 3-isopropylmal 1e-05
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 3e-05
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 4e-05
TIGR00183416 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase 0.001
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
 Score =  945 bits (2443), Expect = 0.0
 Identities = 408/481 (84%), Positives = 433/481 (90%), Gaps = 5/481 (1%)

Query: 12  LRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVN-NRVSFRNQLAPAMSF 70
           LR  A  PA A   M SSS+ A  NP   L S+   G+F+G ++ NR +F  Q   A S 
Sbjct: 7   LRLLAYRPALAL--MPSSSSSAAANP--LLASNPCRGIFNGGLSKNRRAFHVQFHRASSV 62

Query: 71  RCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDAT 130
           RCFASA   DR+KVQNPIVEMDGDEMTR+IWQMIKDKLIFPYLDLDIKY+DLGILNRDAT
Sbjct: 63  RCFASAAAADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDAT 122

Query: 131 DDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPI 190
           DDKVTVESAEATLKYNVAIKCATITPDE R+KEFGLKSMWRSPNGTIRNILNGTVFREPI
Sbjct: 123 DDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPI 182

Query: 191 LCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF 250
           LC+NIPR+VPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF PEDG  PVELDVY+F
Sbjct: 183 LCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDF 242

Query: 251 KGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310
           KGPG+ALAMYNVDESIRAFAESSM++A  KKWPLYLSTKNTILKKYDGRFKDIFQ+VYEE
Sbjct: 243 KGPGVALAMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEE 302

Query: 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTS 370
           +W+QKFEEHSIWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTS
Sbjct: 303 QWKQKFEEHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTS 362

Query: 371 VLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLL 430
           VLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNE LL
Sbjct: 363 VLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEELL 422

Query: 431 HFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPAM 490
            FV KLE+ACIE VE+GKMTKDLAIL+HGPKVSREFYLNTEEFIDAVA  L  K  EPA+
Sbjct: 423 DFVHKLESACIETVESGKMTKDLAILIHGPKVSREFYLNTEEFIDAVAQTLATKRGEPAV 482

Query: 491 V 491
           V
Sbjct: 483 V 483

Length = 483
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|232853 TIGR00169, leuB, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|232862 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 546
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
KOG1526422 consensus NADP-dependent isocitrate dehydrogenase 100.0
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PRK09222482 isocitrate dehydrogenase; Validated 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
TIGR02924473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
PF03971735 IDH: Monomeric isocitrate dehydrogenase; InterPro: 97.44
TIGR00178741 monomer_idh isocitrate dehydrogenase, NADP-depende 97.19
COG2838744 Icd Monomeric isocitrate dehydrogenase [Energy pro 95.65
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 90.54
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 87.92
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 87.27
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 86.03
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 84.7
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 83.91
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 83.56
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 83.39
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 82.61
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 82.38
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 81.42
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
Probab=100.00  E-value=8e-122  Score=976.73  Aligned_cols=468  Identities=85%  Similarity=1.325  Sum_probs=430.3

Q ss_pred             hhhhhhccccccccccCCCcccccCCCCccccccc-ccchhhhcccchhhhhhhhcccccccceeecccEEEEcCCccHH
Q 009041           20 AAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHV-NNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTR   98 (546)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v~~~I~vlpGDGIGp   98 (546)
                      ..+...|+++++++..||.++..+.+  +.|++.+ .+..........++.-+.+++..+..||+|++|||+||||||||
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~piv~~~GDem~r   90 (483)
T PLN03065         13 RPALALMPSSSSSAAANPLLASNPCR--GIFNGGLSKNRRAFHVQFHRASSVRCFASAAAADRIKVQNPIVEMDGDEMTR   90 (483)
T ss_pred             chhhhhcccccchhhcCcccccCchh--hhccccccccccccccccccccchhhhcchhhhccccccCCeEEecCCcchH
Confidence            33456788889999999999988865  4555443 34333444444455556666655568999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhhccccccCCCchHHHH
Q 009041           99 IIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIR  178 (546)
Q Consensus        99 EI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e~~l~~~~~spn~~LR  178 (546)
                      |||+.++++|+.++++++|+|+|+|.+++++||+++|+|++++||++||+||||++||++++++||+||+||+|||++||
T Consensus        91 ~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR  170 (483)
T PLN03065         91 VIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIR  170 (483)
T ss_pred             HHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCCcccccccccCCceEEE
Q 009041          179 NILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA  258 (546)
Q Consensus       179 k~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~~~~v~~~~~~~va~~  258 (546)
                      ++||||+|+|||.++++|++.++|+.||+|+|||+||+|.+.++.+.+||+++++|++++|+.+.+..+++|.+++++++
T Consensus       171 ~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~~~e~~v~~f~~~gva~~  250 (483)
T PLN03065        171 NILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALA  250 (483)
T ss_pred             HHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCCcceeEeeccCCCCeEEE
Confidence            99999999999988999999999999999999999999999999999999999999999998788888999998899999


Q ss_pred             EeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeEEeeEehhHHHHHHhhC
Q 009041          259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKS  338 (546)
Q Consensus       259 ~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~~e~~lVDa~amqLVk~  338 (546)
                      ++||+++++||||+||+||++|+++||++||+||||.|||+|+++|+|||+++|+++|.+++|+|+|+|||+|+||||++
T Consensus       251 ~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~  330 (483)
T PLN03065        251 MYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVKS  330 (483)
T ss_pred             EEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999878888888889999999999999999999


Q ss_pred             CCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHHHHHHHHHH
Q 009041          339 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE  418 (546)
Q Consensus       339 P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~  418 (546)
                      |++|||||+|||||||||++|+++|||||+||+|+|+++++++|||+||||||||++||+||+++|||+|+|+||+|||+
T Consensus       331 P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~  410 (483)
T PLN03065        331 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE  410 (483)
T ss_pred             CCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999865799999999999999999999967999999999999999


Q ss_pred             hhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHHHHHHhhhcCCc
Q 009041          419 HRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPA  489 (546)
Q Consensus       419 hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~~~L~~~~~~~~  489 (546)
                      |+|++|+|+++.++|++||+||.+++++|++|+|||++.+|+++.++++++|+||+|+|+++|++++...+
T Consensus       411 hlg~ld~~~~l~~~A~~Le~Av~~tie~G~~T~DLg~~~~G~~~~~~~~~~T~ef~daV~~~L~~~~~~~~  481 (483)
T PLN03065        411 HRAKLDKNEELLDFVHKLESACIETVESGKMTKDLAILIHGPKVSREFYLNTEEFIDAVAQTLATKRGEPA  481 (483)
T ss_pred             HhCCCCccchHHHHHHHHHHHHHHHHHcCCcccccccccCCCcccCCCCcCHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999877767444466789999999999999998887544

>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1 Back     alignment and domain information
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type Back     alignment and domain information
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query546
1lwd_A413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 1e-168
1t09_A414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-166
3mas_B419 Crystal Structure Of Heterodimeric R132h Mutant Of 1e-166
3map_A422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 1e-166
3inm_A425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-166
2cmj_A410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 1e-165
3us8_A427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 1e-159
4hcx_A409 Structure Of Icdh-1 From M.tuberculosis Complexed W 1e-156
2qfv_A427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 1e-155
4aoy_A402 Open Ctidh. The Complex Structures Of Isocitrate De 1e-125
1zor_A399 Isocitrate Dehydrogenase From The Hyperthermophile 1e-119
2uxq_A402 Isocitrate Dehydrogenase From The Psychrophilic Bac 1e-105
2d1c_A496 Crystal Structure Of Tt0538 Protein From Thermus Th 2e-04
3vml_A375 Chimera 3-Isopropylmalate Dehydrogenase Between She 2e-04
3vkz_A375 3-Isopropylmalate Dehydrogenase From Shewanella One 3e-04
3u1h_A390 Crystal Structure Of Ipmdh From The Last Common Anc 7e-04
3vmk_A375 3-Isopropylmalate Dehydrogenase From Shewanella Ben 8e-04
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  588 bits (1517), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 269/407 (66%), Positives = 327/407 (80%), Gaps = 2/407 (0%)
Query: 81  RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
           R+KV  P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA 
Sbjct: 4   RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSAL 63
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
           AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+VP
Sbjct: 64  ATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVP 123
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
           GW KPI IGRHA GDQY+ATD V+   G  K+VF P+DG+   + +VYNF   G+ + MY
Sbjct: 124 GWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMY 183
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
           N DESI  FA S    A  KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++  F+++ 
Sbjct: 184 NTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL 380
           IWYEHRLIDDMVA  +KS GG+VWACKNYDGDVQSD+LAQGFGSLGLMTSVL+  DGKT+
Sbjct: 244 IWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTI 303
Query: 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAAC 440
           EAEAAHGTVTRH+R HQKG+ TSTN IASIFAWTRGLEHR KLD N+ L+ F Q LE  C
Sbjct: 304 EAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVC 363
Query: 441 IEAVETGKMTKDLAILVHGPKVSR--EFYLNTEEFIDAVATNLGAKL 485
           +E VE+G MTKDLA  +HG    +  E +LNT +F+D + +NL   L
Sbjct: 364 VETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRAL 410
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus Thermophilus Hb8 Length = 496 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 At Atmospheric Pressure Length = 375 Back     alignment and structure
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor Of Bacillus Length = 390 Back     alignment and structure
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica Db21 Mt-2 Length = 375 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query546
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 0.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 0.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 0.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 0.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 0.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 0.0
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 2e-19
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 1e-17
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 7e-05
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 4e-13
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 7e-13
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 6e-12
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 3e-11
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 4e-11
2d1c_A496 Isocitrate dehydrogenase; structural genomics, NPP 8e-11
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 8e-10
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 9e-10
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 2e-09
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 2e-09
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 1e-06
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 7e-05
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 6e-04
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
 Score =  587 bits (1514), Expect = 0.0
 Identities = 269/408 (65%), Positives = 326/408 (79%), Gaps = 2/408 (0%)

Query: 80  DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESA 139
            R+KV  P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA
Sbjct: 3   QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSA 62

Query: 140 EATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV 199
            AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+V
Sbjct: 63  LATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLV 122

Query: 200 PGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAM 259
           PGW KPI IGRHA GDQY+ATD V+   G  K+VF P+DG+   + +VYNF   G+ + M
Sbjct: 123 PGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGM 182

Query: 260 YNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319
           YN DESI  FA S    A  KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++  F+++
Sbjct: 183 YNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKY 242

Query: 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKT 379
            IWYEHRLIDDMVA  +KS GG+VWACKNYDGDVQSD+LAQGFGSLGLMTSVL+  DGKT
Sbjct: 243 KIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKT 302

Query: 380 LEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAA 439
           +EAEAAHGTVTRH+R HQKG+ TSTN IASIFAWTRGLEHR KLD N+ L+ F Q LE  
Sbjct: 303 IEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKV 362

Query: 440 CIEAVETGKMTKDLAILVHGPK--VSREFYLNTEEFIDAVATNLGAKL 485
           C+E VE+G MTKDLA  +HG       E +LNT +F+D + +NL   L
Sbjct: 363 CVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRAL 410
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Length = 364 Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Length = 375 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query546
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
2d1c_A496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 97.47
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 97.45
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 86.25
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 86.15
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 85.97
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 85.65
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=9.5e-118  Score=943.13  Aligned_cols=402  Identities=66%  Similarity=1.132  Sum_probs=376.1

Q ss_pred             ccceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCc
Q 009041           79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE  158 (546)
Q Consensus        79 ~~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~  158 (546)
                      .+||||++||++|||||||||||++++++|.+++++|+|+++|+|.++++++|+++|+|++++|+++||+||||++||.+
T Consensus        24 ~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~  103 (427)
T 3us8_A           24 MAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDE  103 (427)
T ss_dssp             -CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred             cccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence            46999999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             cchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCC
Q 009041          159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED  238 (546)
Q Consensus       159 ~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~  238 (546)
                      ++++||+++++|+|+|++|||+||||||+|||.++++|++.++|++|||||||||||+|+|.|+...++|+.++.|.+++
T Consensus       104 ~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~  183 (427)
T 3us8_A          104 GRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGED  183 (427)
T ss_dssp             HHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred             cccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeeccc
Confidence            88999999999999999999999999999998668999998888999999999999999999999877899999998888


Q ss_pred             CCCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhcccccc
Q 009041          239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE  318 (546)
Q Consensus       239 G~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~  318 (546)
                      | ++.+..+++|++.+++++++||++++|||+|+||+||++|++|||+|||+||||.|||||+++|+|||+++||++|++
T Consensus       184 G-~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~  262 (427)
T 3us8_A          184 G-QTIEHDVYDAPGAGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKA  262 (427)
T ss_dssp             S-CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             c-ccccccccccCCCcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCC
Confidence            7 456667788887888888999999999999999999999999999999999999999999999999995599999999


Q ss_pred             CCeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhccc
Q 009041          319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK  398 (546)
Q Consensus       319 ~dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IA  398 (546)
                      ++|+++|+|||+|+||||++|++|||||+|||||||||++|+++|||||+||+|||+++.+++|||+||||||||+++||
T Consensus       263 ~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~iA  342 (427)
T 3us8_A          263 EKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQK  342 (427)
T ss_dssp             TTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHT
T ss_pred             CCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchhcC
Confidence            99999999999999999999999999999999999999999999999999999999987557999999999999999999


Q ss_pred             CCCCc-cCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHH
Q 009041          399 GQETS-TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAV  477 (546)
Q Consensus       399 GK~ti-ANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV  477 (546)
                      ||| + |||+|+||||+|||+|+|++++|+++.++|++|++||.+++++|++|+|||.+. ++   ..+.++|+||+|+|
T Consensus       343 Gk~-i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~-~~---~~~~~~T~e~~daV  417 (427)
T 3us8_A          343 GEE-TSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGFMTKDLALLI-GP---DQPWLSTTGFLDKI  417 (427)
T ss_dssp             TCC-CCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHH-CT---TCCCBCHHHHHHHH
T ss_pred             CCC-ceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCCcCccccccc-cc---CCcccCHHHHHHHH
Confidence            999 7 999999999999999999998889999999999999999999999999998211 01   12369999999999


Q ss_pred             HHHHHhhhc
Q 009041          478 ATNLGAKLR  486 (546)
Q Consensus       478 ~~~L~~~~~  486 (546)
                      +++|++++.
T Consensus       418 ~~~l~~~l~  426 (427)
T 3us8_A          418 DENLRKAMA  426 (427)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhc
Confidence            999987763
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 546
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-139
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-138
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 6e-44
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 1e-36
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-33
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-28
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-27
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 8e-26
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 5e-24
d1itwa_740 c.77.1.2 (A:) Monomeric isocitrate dehydrogenase { 7e-23
d1g2ua_345 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-13
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  407 bits (1047), Expect = e-139
 Identities = 269/409 (65%), Positives = 326/409 (79%), Gaps = 2/409 (0%)

Query: 81  RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
           R+KV  P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA 
Sbjct: 4   RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSAL 63

Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
           AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+VP
Sbjct: 64  ATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVP 123

Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
           GW KPI IGRHA GDQY+ATD V+   G  K+VF P+DG+   + +VYNF   G+ + MY
Sbjct: 124 GWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMY 183

Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
           N DESI  FA S    A  KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++  F+++ 
Sbjct: 184 NTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243

Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL 380
           IWYEHRLIDDMVA  +KS GG+VWACKNYDGDVQSD+LAQGFGSLGLMTSVL+  DGKT+
Sbjct: 244 IWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTI 303

Query: 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAAC 440
           EAEAAHGTVTRH+R HQKG+ TSTN IASIFAWTRGLEHR KLD N+ L+ F Q LE  C
Sbjct: 304 EAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVC 363

Query: 441 IEAVETGKMTKDLAILVHGPKV--SREFYLNTEEFIDAVATNLGAKLRE 487
           +E VE+G MTKDLA  +HG       E +LNT +F+D + +NL   L  
Sbjct: 364 VETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 412
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740 Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Length = 345 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query546
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1itwa_740 Monomeric isocitrate dehydrogenase {Azotobacter vi 98.93
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 92.92
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.2e-102  Score=823.92  Aligned_cols=407  Identities=65%  Similarity=1.107  Sum_probs=364.1

Q ss_pred             ccceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCc
Q 009041           79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE  158 (546)
Q Consensus        79 ~~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~  158 (546)
                      .+||+|++|||+|||||||+++|+.++++|+.++++|+|+|+|+|.+++++||+++|+|+++++|++||+||||++||++
T Consensus         2 ~~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~~   81 (413)
T d1lwda_           2 DQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE   81 (413)
T ss_dssp             CCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred             CCcccccCCEEEecCccHHHHHHHHHHHHHccCCCCceEEEEeCCHHHHHHhCCcCcHHHHHHHHHcCEEEECCcCCCCc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCC
Q 009041          159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED  238 (546)
Q Consensus       159 ~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~  238 (546)
                      +.+++..+++.|+|||+.||++||||+|+||+++...++...++++|+||+||||||+|+|.|+....++...+.+.+..
T Consensus        82 ~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~~  161 (413)
T d1lwda_          82 ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKD  161 (413)
T ss_dssp             HHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred             cccccccccccccchhhhHHHhcCCceEEecccccCCCCcCCCCCCCeEEeeccccceeeccceeccCcccceeEEeccc
Confidence            87777777888999999999999999999996543333344566899999999999999999999877777777788877


Q ss_pred             CCCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhc-cccc
Q 009041          239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR-QKFE  317 (546)
Q Consensus       239 G~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP-~~f~  317 (546)
                      |......+.+++....++..+++|+.+++||+|+||++|++|+++||++||+|||+.+||||+++|+||+ ++|| .+++
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva-~~~p~~~~~  240 (413)
T d1lwda_         162 GSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIF-EKHYKTDFD  240 (413)
T ss_dssp             CCCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHH-HHHTHHHHH
T ss_pred             cccccccccccccccccceeeccccchhhHHHHHHHHHHHhcCcceEEecccceeeehhHHHHHHHHHHH-HHhcccccc
Confidence            7766666667777777788899999999999999999999999999999999999999999999999999 4665 4566


Q ss_pred             cCCeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhh-c
Q 009041          318 EHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRL-H  396 (546)
Q Consensus       318 ~~dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~-~  396 (546)
                      ..+|+++|+++|+|+|+|+++|+.|||||+|||||||||++|+++|||||+||+|+|++++.++|||+|||||||.++ .
T Consensus       241 ~~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag~~~  320 (413)
T d1lwda_         241 KYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQ  320 (413)
T ss_dssp             HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHH
T ss_pred             ccEEEEehhhhhhhhhhhcCCCCCeEEEEccccchhHhhHHHHhcCCCCCCcccccCCCccccccccccccchhhcchhh
Confidence            668999999999999999999997799999999999999999999999999999999988777899999999998886 6


Q ss_pred             ccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCC--CCCCccccCHHHHH
Q 009041          397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGP--KVSREFYLNTEEFI  474 (546)
Q Consensus       397 IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~--~~~~~~~asT~ef~  474 (546)
                      |+||| +|||+|||||++|||+|+|+.+.++.+.++|++|++||.+|+++|++|+|||-..+|.  .....+.++|+||+
T Consensus       321 iagk~-iANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~sT~ef~  399 (413)
T d1lwda_         321 KGRPT-STNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFL  399 (413)
T ss_dssp             TTCCC-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHH
T ss_pred             cCCcc-ccChHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHCCCCCcccCCCccccccccccCCccCHHHHH
Confidence            78899 9999999999999999999998888899999999999999999999999998211111  01122457999999


Q ss_pred             HHHHHHHHhhhcC
Q 009041          475 DAVATNLGAKLRE  487 (546)
Q Consensus       475 daV~~~L~~~~~~  487 (546)
                      |+|+++|+++|..
T Consensus       400 daV~~~L~~~l~~  412 (413)
T d1lwda_         400 DTIKSNLDRALGR  412 (413)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999998863
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure