Citrus Sinensis ID: 009063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-----
Protein Sequence
MTCSSTMQLSQELNIYNKFGCSNLYTRQTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEcccccccccEEEccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHccccccHHHHHHHHcccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccccccccccccccccEEEEccccccccccHHHHHHHHccccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEcccEEEcEEEEccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEccccEEEEEccccccccccccccHcccccccccccEEEEccccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtcsstmqLSQELNIynkfgcsnlytrqtgkgrlvhinLSSLAMRRDAWGLNLLshlcgplnpistkcNVFICRSvlapggidipVLKSAAAAVLTRsydtlrgnpviLRLIPAAALVAFAAWGLVPLVRLGRTiflnrtdgswkrsRTHYILTSYLQPLLLWTGVTLICreldplvlpsetsqgVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTeandadstdarnmgfnfaGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMihatqpfviNEWIQTKIQGYEVSGtvehvgwwsptiirgddreavhipnhkfTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFleninpesqslNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHrarmatpirtvqkiysepdlenipfadtifthsraaanrpflliepsykissddkIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Flexible Loop (DISEMBL)
mtcsstmqLSQELNIYNKFGCSNLYTRQTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLnrtdgswkrsRTHYILTSYLQPLLLWTGVTLICRELDPLVlpsetsqgvKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLeninpesqslnILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLliepsykissddkIKASTRaarneekirrlnqpqnlilrhihrldwyqllttkrarqy
Low Complexity Region (SEG)
MTCSSTMQLSQELNIYNKFGCSNLYTRQTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPaaalvafaaWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWltagglgtvlltlagREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Disordered region (IsUnstruct)
***********ELNIYNKFGCSNLYTRQTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSY***************************QNLILRHIHRLDWYQLLTT******
Disordered Region (DISOPRED)
********LSQELNIYNKF*****************INLSSLA**R*AWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV***********************************************************************IHRLDWYQLLTTK*****
Disordered Region (DISEMBL)
********LSQELNIYNKFGCSNLYTRQTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Disordered Region (DISPRO)
*TCSSTMQLSQELNIYNKFGCSNL**R*TGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKIS*******************RLNQPQNLILRHIHRLDWYQLLTTKRARQ*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTCSSTMQLSQELNIYNKFGCSNLYTRQTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	545	2.2.26 [Sep-21-2011]
Q8L7W1	678	Mechanosensitive ion chan	yes	no	0.902	0.725	0.658	0.0
Q56X46	673	Mechanosensitive ion chan	no	no	0.919	0.744	0.625	0.0
P0AEB5	343	MscS family inner membran	N/A	no	0.416	0.661	0.321	5e-27
P0AEB6	343	MscS family inner membran	N/A	no	0.416	0.661	0.321	5e-27
O66994	368	Uncharacterized MscS fami	yes	no	0.429	0.635	0.268	7e-16
Q9ZKG7	623	Uncharacterized MscS fami	yes	no	0.403	0.353	0.265	6e-15
O25170	623	Uncharacterized MscS fami	yes	no	0.403	0.353	0.265	8e-15
Q58543	361	Large-conductance mechano	yes	no	0.297	0.448	0.284	1e-09
Q8VZL4	497	Mechanosensitive ion chan	no	no	0.383	0.420	0.241	5e-09
O07594	371	Uncharacterized MscS fami	yes	no	0.387	0.568	0.206	6e-09

>sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/501 (65%), Positives = 403/501 (80%), Gaps = 9/501 (1%)

Query: 7   MQLSQELNIYNKFGCSNLYTRQTGKGR--LVHINLSSLAMRRDAWGLNLLSHLCGPLNPI 64
           + LS +LN++     S  +    GK R  L    LSS A R+D W L LL  L G + P+
Sbjct: 8   LPLSHDLNVHKIHEASGFHNSAAGKNRVYLTRTGLSSCATRQDVWSLQLLESLSGSIVPV 67

Query: 65  STKCNVFICRSVLAPG-GIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAW 123
           S++CN F+CRS L+PG G + P+LKS A  + TR YD L GNP +++LIPA  ++AFA W
Sbjct: 68  SSRCNAFVCRSALSPGNGNEGPILKSTAV-IFTRVYDALGGNPHLVKLIPAVGILAFATW 126

Query: 124 GLVPLVRLGRT-IFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSET 182
           GL PL+RL RT +F    D + ++S T YI+ SYLQPLLLW+G  L+CR LDP+VLPS  
Sbjct: 127 GLRPLLRLARTTLFEKGNDANSQKSSTQYIVVSYLQPLLLWSGAILLCRTLDPIVLPSSA 186

Query: 183 SQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVY 242
            Q +KQR+L F RS+STVLAF+ CLSSL+QQ+QKF  E N+    D RNMGF+FAGKAVY
Sbjct: 187 GQAIKQRLLIFARSISTVLAFSCCLSSLLQQVQKFFMETNNP--ADTRNMGFSFAGKAVY 244

Query: 243 TAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINE 302
           TA WVAA SLFMELLGFSTQ+WLTAGGLGTVLLTLAGREI TNFLSS+MIHAT+PFV+NE
Sbjct: 245 TAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNE 304

Query: 303 WIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTY 362
           WIQTKI GYEVSGTVE VGWWSPTIIRGDDREAVHIPNH+F+VN+VRNL+QKTHWRIKT+
Sbjct: 305 WIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNLTQKTHWRIKTH 364

Query: 363 LAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTS 422
           LAISHLDV K+N+IVADMRKVL+KNPQ+EQQ++HRRVFLE+I+PE+Q+L IL+SCFVKTS
Sbjct: 365 LAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHRRVFLEDIDPENQALRILISCFVKTS 424

Query: 423 RFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAA 482
           RFEEYLCVKEA+LLDLL VI HH AR+ATPIRTVQ++ +E +++   F+D +F  ++AA 
Sbjct: 425 RFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQRMRNEAEVDTAGFSDIVF--NQAAM 482

Query: 483 NRPFLLIEPSYKISSDDKIKA 503
           NR ++LIEPSYKI+SDD  K+
Sbjct: 483 NRRYMLIEPSYKINSDDNSKS 503

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.
Arabidopsis thaliana (taxid: 3702)

>sp|Q56X46|MSL2_ARATH Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/515 (62%), Positives = 399/515 (77%), Gaps = 14/515 (2%)

Query: 1   MTCSSTMQLSQELNI-YNKFGCSNLYTRQTGKGRLVHINLSSLAM-----RRDAWGLNLL 54
           M    T+QLS  L +  N+  C+      +   R +HI+   L++     +     + L 
Sbjct: 1   MALYGTLQLSHSLGLCRNQRFCN---PENSAMRRRLHISNGPLSLGVPLGQHGFSNILLS 57

Query: 55  SHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPA 114
           ++L  P+  +  +   F C S  A G    P +K A   VLT+S+  ++  P + +L+PA
Sbjct: 58  NYLRRPICSVPCRTTAFRCHSFSASGKAIEPAVK-AVTVVLTKSHGLMQQFPFVYKLVPA 116

Query: 115 AALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELD 174
            AL+ F+ WGLVP  R GR I LN+ D  WK+S T++++TSY+QPLLLW G   ICR LD
Sbjct: 117 VALLVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRALD 176

Query: 175 PLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGF 234
           P+VLP+E S+ VK R+LNFVRSLSTVLAFAYCLSSLIQQ QK  +E   ++ +D RNMGF
Sbjct: 177 PVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSET--SNPSDTRNMGF 234

Query: 235 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHA 294
            FAGKA+Y+AVWVAAVSLFMELLGFSTQ+WLTAGGLGTVL+TLAGREI TNFLSSVMIHA
Sbjct: 235 QFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHA 294

Query: 295 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQK 354
           T+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRG+DREA+HIPNHKFTVNVVRNL+QK
Sbjct: 295 TRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQK 354

Query: 355 THWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNIL 414
           THWRIKT+LAISHLDV+K+N+IVADMRKVLAKNP VEQQRLHRRVFLEN+ PE+Q+L+IL
Sbjct: 355 THWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSIL 414

Query: 415 VSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTI 474
           +SCFVKTS  EEYL VKEAILLDLL VISHHRAR+ATPIRT++K+Y+E D+EN PF +++
Sbjct: 415 ISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESM 474

Query: 475 FTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR 509
           +      + RP +LIEP+YKI+ +DK K+  RAA+
Sbjct: 475 Y--GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAK 507

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer (By similarity). Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.

Arabidopsis thaliana (taxid: 3702)

>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain K12) GN=ynaI PE=1 SV=1

 Score =  123 bits (308), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 130/246 (52%), Gaps = 19/246 (7%)

Query: 212 QQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLG 271
           QQI+K        D T AR M      + +   + V  V L+ E  G S    LT GG+G
Sbjct: 104 QQIKK------GRDITSARIMS-----RIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIG 152

Query: 272 TVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGD 331
            + + +AG++I +NF S +M++  +PF I +WI++  +  E  GTV  +GW    I   D
Sbjct: 153 GLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIE--GTVAEIGWRITKITTFD 210

Query: 332 DREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVE 391
           +R  +++PN  F+   V N  + T+ RI T + + + D  KV  IV  +R++L  +P ++
Sbjct: 211 NR-PLYVPNSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAID 269

Query: 392 QQRLHRRVFLENINP-ESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMA 450
           Q    R+  L   N     SLNI+V CF KT+ + E+L  ++ + L ++ ++  H A  A
Sbjct: 270 Q----RQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFA 325

Query: 451 TPIRTV 456
            P +T+
Sbjct: 326 FPSQTL 331

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7 GN=ynaI PE=3 SV=1

 Score =  123 bits (308), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 130/246 (52%), Gaps = 19/246 (7%)

Query: 212 QQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLG 271
           QQI+K        D T AR M      + +   + V  V L+ E  G S    LT GG+G
Sbjct: 104 QQIKK------GRDITSARIMS-----RIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIG 152

Query: 272 TVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGD 331
            + + +AG++I +NF S +M++  +PF I +WI++  +  E  GTV  +GW    I   D
Sbjct: 153 GLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIE--GTVAEIGWRITKITTFD 210

Query: 332 DREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVE 391
           +R  +++PN  F+   V N  + T+ RI T + + + D  KV  IV  +R++L  +P ++
Sbjct: 211 NR-PLYVPNSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAID 269

Query: 392 QQRLHRRVFLENINP-ESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMA 450
           Q    R+  L   N     SLNI+V CF KT+ + E+L  ++ + L ++ ++  H A  A
Sbjct: 270 Q----RQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFA 325

Query: 451 TPIRTV 456
            P +T+
Sbjct: 326 FPSQTL 331

Escherichia coli O157:H7 (taxid: 83334)

>sp|O66994|Y812_AQUAE Uncharacterized MscS family protein aq_812 OS=Aquifex aeolicus (strain VF5) GN=aq_812 PE=3 SV=1

 Score = 85.9 bits (211), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 124/246 (50%), Gaps = 12/246 (4%)

Query: 212 QQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLG 271
            +I +F  +    D   A  +G +F  K +   V V   +  ++  G +    L + GL 
Sbjct: 126 NKIVEFFVKVGGKDF--AEEVG-DFILKILKAFVVVIVGASLLQEWGVNIGAILASVGLL 182

Query: 272 TVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGD 331
            + ++LA ++ F N LS ++I   +P  + E ++ K    +  G+VE +G  S T IR  
Sbjct: 183 GLAVSLAAKDTFENILSGLIILLDKPVKVGETVKVK----DFMGSVEDIGLRS-TKIRTF 237

Query: 332 DREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQV 390
           D+  V IPN     N V N +++   R++ Y+ + +     ++ +I+ ++R++L ++P V
Sbjct: 238 DKSLVTIPNRDIVNNHVENFTRRNKRRVRFYIGVVYSTKREQLENILKEIRELLKEHPGV 297

Query: 391 EQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMA 450
            +      V+ EN      SLNIL+  +  T+ +EEYL + E I L ++ ++  + +  A
Sbjct: 298 AKDE-KFYVYFENYG--DSSLNILIQYYANTNDYEEYLKIIEDINLKIMEIVEKNGSSFA 354

Query: 451 TPIRTV 456
            P R+V
Sbjct: 355 FPSRSV 360

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori (strain J99) GN=jhp_0969 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 36/256 (14%)

Query: 235 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHA 294
           N   K VY  +++ A+   ++ LGF+    + + G+G + + LA +++  NF +SV++  
Sbjct: 363 NLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLL 422

Query: 295 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLS-Q 353
              F   +WI   + G EV GTV  +G    T IR  D   + +PN +     +RN S +
Sbjct: 423 DNSFSQGDWI---VCG-EVEGTVVEMG-LRRTTIRAFDNALLSVPNSELAGKPIRNWSRR 477

Query: 354 KTHWRIKTYLAISHLDVHKVNSI-VADMRKVLAKNPQV--------EQQRLHRRVFLENI 404
           K   RIK  + +++        + V D++++L  +P++        +    +R +F ++I
Sbjct: 478 KVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNASDYRYMFKKDI 537

Query: 405 ------------------NPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHR 446
                                  S+NILV CF KT  +EE+L VKE ++L ++ ++  H 
Sbjct: 538 VSIDDFLGYKNNLFVFLDQFADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHH 597

Query: 447 ARMATPIRTVQKIYSE 462
              A P    Q +Y E
Sbjct: 598 LSFAFP---SQSLYVE 610

Helicobacter pylori (strain J99) (taxid: 85963)

>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 36/256 (14%)

Query: 235 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHA 294
           N   K VY  +++ A+   ++ LGF+    + + G+G + + LA +++  NF +SV++  
Sbjct: 363 NLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLL 422

Query: 295 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLS-Q 353
              F   +WI   + G EV GTV  +G    T IR  D   + +PN +     +RN S +
Sbjct: 423 DNSFSQGDWI---VCG-EVEGTVVEMG-LRRTTIRAFDNALLSVPNSELAGKPIRNWSRR 477

Query: 354 KTHWRIKTYLAISHLDVHKVNSI-VADMRKVLAKNPQV--------EQQRLHRRVFLENI 404
           K   RIK  + +++        + V D++++L  +P++        +    +R +F ++I
Sbjct: 478 KVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNVSDYRYMFKKDI 537

Query: 405 ------------------NPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHR 446
                                  S+NILV CF KT  +EE+L VKE ++L ++ ++  H 
Sbjct: 538 VSIDDFLGYKNNLFVFLDQFADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHH 597

Query: 447 ARMATPIRTVQKIYSE 462
              A P    Q +Y E
Sbjct: 598 LSFAFP---SQSLYVE 610

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

>sp|Q58543|MSMJL_METJA Large-conductance mechanosensitive channel MscMJLR OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1143 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 10/172 (5%)

Query: 257 LGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGT 316
           LG+  +  L   G+G + + LA + + +N ++ ++I   +PF I  WI T   G   SG 
Sbjct: 161 LGYDIKTLLAGLGIGGLAVALASQNLVSNLIAGLIILTDKPFKIGNWI-TFSGG---SGI 216

Query: 317 VEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNS 375
           VE +G  S T IR  D   + +PN K    +++N+  K  W++ T + +++   V K+  
Sbjct: 217 VEDIGIRS-TKIRATDNSIIVVPNSKLIDEIIQNVPSKNKWKVSTTIGVTYNTPVEKIRK 275

Query: 376 IVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEY 427
               ++ +L ++P VE + +   V+ +       SLNI V  ++K SR+  Y
Sbjct: 276 AEEIIKNILLEHPNVEDEPI--TVYFKEFG--DWSLNIQVVYYIKNSRYNGY 323

Large-conductance mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Selective for cations. Rectifies with voltage.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 19/228 (8%)

Query: 235 NFAG---KAVYTAVWVAAVSLFM-------ELLGFSTQRWLTAGGLGTVLLTLAGREIFT 284
           +F G   + V T   V++V LF        E  G + Q  LT GG+G V    A R+I  
Sbjct: 271 SFGGLDREKVLTLDKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILG 330

Query: 285 NFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFT 344
           N LS + +  ++PF + +     I+   V G V  +G  + +++   ++  V +PN  F+
Sbjct: 331 NVLSGLSMQFSRPFSMGD----TIKAGSVEGQVIEMGLTTTSLLNA-EKFPVLVPNSLFS 385

Query: 345 VNVVRNLSQKTHWR-IKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 403
             V+ N S +  WR I + + +   D+  +  I  +++++L  N +V   +     +L  
Sbjct: 386 SQVIVNKS-RAQWRAIASKIPLQIDDLDMIPQISNEIKEMLRSNTKVFLGKEAPHCYLSR 444

Query: 404 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMAT 451
           +  E     + + C +     EE    ++ +LL+ + +I  H   + T
Sbjct: 445 V--EKSFAELTIGCNLIRMGKEELYNTQQEVLLEAVKIIKKHGVSLGT 490

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|O07594|YHDY_BACSU Uncharacterized MscS family protein YhdY OS=Bacillus subtilis (strain 168) GN=yhdY PE=3 SV=1

 Score = 62.8 bits (151), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 103/223 (46%), Gaps = 12/223 (5%)

Query: 236 FAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT 295
           F  K +   +   +VS+  +   +    ++   GLG +   LA ++  +NF   ++I   
Sbjct: 136 FLSKLLRFVIIALSVSVIAQEFNYDVNGFVAGLGLGGLAFALAAKDTISNFFGGIIIITE 195

Query: 296 QPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKT 355
           +PF I +W++T      V+G+VE + + S T  R      V +PN   ++  + N ++ T
Sbjct: 196 KPFTIGDWVETS----TVTGSVEDITFRS-TRFRTAQGALVTVPNSTLSMEAITNWTRMT 250

Query: 356 HWRIKTYLAISHLD-VHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQS-LNI 413
             +I   + +S+   +  +   +  +R +L     +E + +   + + N +  + S  N+
Sbjct: 251 KRQITFSIHVSYATPIENLERSIHSLRTML-----LEHEGVDNEIIMVNFDTFADSYYNL 305

Query: 414 LVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV 456
             + + KT+ + E L ++E I   ++ ++     + A P + V
Sbjct: 306 FFNFYTKTTVWAENLNIREDINYKIIEILGAEGVQFAYPGQMV 348

May play a role in resistance to osmotic downshock.

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	545
255545964	705	conserved hypothetical protein [Ricinus	0.935	0.723	0.743	0.0
224067078	628	predicted protein [Populus trichocarpa]	0.855	0.742	0.791	0.0
225459093	709	PREDICTED: uncharacterized protein LOC10	0.935	0.719	0.743	0.0
356515716	682	PREDICTED: uncharacterized protein LOC10	0.946	0.756	0.715	0.0
356508025	681	PREDICTED: uncharacterized protein LOC10	0.946	0.757	0.706	0.0
449469783	704	PREDICTED: mechanosensitive ion channel	0.944	0.731	0.714	0.0
302142063	514	unnamed protein product [Vitis vinifera]	0.921	0.976	0.747	0.0
116268423	705	expressed protein [Prunus persica]	0.847	0.655	0.781	0.0
449508955	550	PREDICTED: mechanosensitive ion channel	0.864	0.856	0.75	0.0
357465255	716	MscS family inner membrane protein ynaI	0.941	0.716	0.676	0.0

>gi|255545964|ref|XP_002514042.1| conserved hypothetical protein [Ricinus communis] gi|223547128|gb|EEF48625.1| conserved hypothetical protein [Ricinus communis]

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/519 (74%), Positives = 453/519 (87%), Gaps = 9/519 (1%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSNLYTRQTGKGR----LVHINLSSLAMRRDAWGLNLLSH 56
           MTC+ ++QLSQEL IY   GC +      GKG+    L ++ LSS  +R+DAW L+ LS 
Sbjct: 1   MTCTGSIQLSQELKIYTSRGCGSQQNTVLGKGKSRLFLANVTLSSHGLRQDAWTLHFLSS 60

Query: 57  LCGPLNPISTKCNVFICRSVL-APGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAA 115
           +  P+ P  ++CNV +C+S+L + GG +IP++KSAA  VLTRSY+ L G+P++L+LIPA 
Sbjct: 61  MHQPIRPAPSRCNVLVCQSLLTSQGGTEIPLVKSAAV-VLTRSYNALSGSPLVLKLIPAI 119

Query: 116 ALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDP 175
           +++AFA+WGL PL+RLGR IFL+ +D +WK+S THY+LTSYLQPLLLWTG  L+CR LDP
Sbjct: 120 SIIAFASWGLGPLLRLGRIIFLHGSDNNWKKSSTHYVLTSYLQPLLLWTGAILVCRALDP 179

Query: 176 LVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFN 235
           +VL SE +Q VKQR+LNFVRSLSTV+AFAYCLSSLIQQ QKF TE ND  S+DARNMGF+
Sbjct: 180 VVLQSEANQAVKQRLLNFVRSLSTVMAFAYCLSSLIQQAQKFFTEMND--SSDARNMGFS 237

Query: 236 FAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT 295
           FAGKAVY+AVW+AAVSLFMELLGFSTQ+WLTAGGLGTVL+TLAGREI TNFLSSVMIHAT
Sbjct: 238 FAGKAVYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHAT 297

Query: 296 QPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKT 355
           +PFV+NEWIQTKI+GYEVSGTVEHVGWWSPT+IRGDDREAVHIPNHKFTVNVVRNLSQKT
Sbjct: 298 RPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTVIRGDDREAVHIPNHKFTVNVVRNLSQKT 357

Query: 356 HWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILV 415
           HWRIKT+LAISHLDV+KVN+IVADMRKVLAKNPQVEQQRLHRRVFL+NINPE+Q+L ILV
Sbjct: 358 HWRIKTHLAISHLDVNKVNNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALMILV 417

Query: 416 SCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIF 475
           SCFVKTS FEEYLCVKEA+LLDLL V+SHHRAR+ATPIRTVQKIY+E DL+N+PFADTIF
Sbjct: 418 SCFVKTSHFEEYLCVKEAVLLDLLRVLSHHRARLATPIRTVQKIYNEADLDNVPFADTIF 477

Query: 476 THSRAAANRPFLLIEPSYKISSDDKIKASTRA-ARNEEK 513
             SRAA NRP LLIEPSYKI+ DDK KAST++ + NEEK
Sbjct: 478 ARSRAATNRPLLLIEPSYKINGDDKTKASTQSVSTNEEK 516

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067078|ref|XP_002302344.1| predicted protein [Populus trichocarpa] gi|222844070|gb|EEE81617.1| predicted protein [Populus trichocarpa]

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/471 (79%), Positives = 426/471 (90%), Gaps = 5/471 (1%)

Query: 45  RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGI-DIPVLKSAAAAVLTRSYDTLR 103
           R D WGL+ L+   GP +P+ ++CNVF+CRSVL PGG  +IPVLKSAA A  TRSYD LR
Sbjct: 1   RLDPWGLHFLNSTRGPPSPVPSRCNVFLCRSVLTPGGGNEIPVLKSAALA-FTRSYDALR 59

Query: 104 GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 163
           G+ ++L+LIPA  ++ FAAWGL PL+ LGRTIFL+++D SWK+S THY++TSYLQPLLLW
Sbjct: 60  GSNLVLKLIPAIGIITFAAWGLGPLIWLGRTIFLHKSDNSWKKSSTHYVVTSYLQPLLLW 119

Query: 164 TGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAND 223
           TG TLICR LDP+VL SE SQ VKQR+LNFVRSLSTV+AFAYCLSSLIQQ QKF+TE N+
Sbjct: 120 TGATLICRALDPVVLQSEVSQAVKQRLLNFVRSLSTVVAFAYCLSSLIQQAQKFITETNE 179

Query: 224 ADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIF 283
             S+DARNMGF+FAGKAVYTAVW+AAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIF
Sbjct: 180 --SSDARNMGFSFAGKAVYTAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 237

Query: 284 TNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 343
           TNFLSS+MIHAT+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF
Sbjct: 238 TNFLSSIMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 297

Query: 344 TVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 403
           +V++VRNLSQKTHWRIKT+LAISHLDV K+N+IVADMRKVLAKNPQ+EQQRLHRRVFL+N
Sbjct: 298 SVSIVRNLSQKTHWRIKTHLAISHLDVKKINNIVADMRKVLAKNPQIEQQRLHRRVFLDN 357

Query: 404 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEP 463
           INPE+Q+L ILVSCFVKTS FEEYLCVKEA+LLDLL VISHHRAR+ATPIRTVQKIYSE 
Sbjct: 358 INPENQALMILVSCFVKTSHFEEYLCVKEAVLLDLLRVISHHRARLATPIRTVQKIYSEA 417

Query: 464 DLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEK 513
           DLEN+PF+D+IFT S A AN P LLIEPSYKI+S+DK+KAS R+ R NEEK
Sbjct: 418 DLENVPFSDSIFTRSGATANHPLLLIEPSYKINSEDKVKASNRSLRANEEK 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459093|ref|XP_002283836.1| PREDICTED: uncharacterized protein LOC100259028 [Vitis vinifera]

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/519 (74%), Positives = 441/519 (84%), Gaps = 9/519 (1%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSNLYTRQTGKGRL--VHINLSSLAMRRDAWGLNLLSHLC 58
           M  + +MQLS+EL I N+ G SN       K RL  + I LSS A R+DA  L+LL+ + 
Sbjct: 1   MALAGSMQLSRELGIQNRHGYSNQPKIMMAKDRLHLLSITLSSHASRQDALSLHLLNSMR 60

Query: 59  GPLNPISTKCNVFICRSVLAPGGI-DIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAAL 117
           G + P+S++C  F+CRS LAPGG  +I VLKSAA  VLTRS + LRG P++L+L+PA ++
Sbjct: 61  GSITPVSSRCEFFLCRSFLAPGGGNEISVLKSAAL-VLTRSCNALRGRPLVLQLVPAVSI 119

Query: 118 VAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLV 177
           VAFAAWGL PL+RL R +FLN+TD SWK+S T+Y+LT YLQPLLLW G  LICR LDP++
Sbjct: 120 VAFAAWGLGPLMRLSRNLFLNKTDSSWKKSSTYYVLTYYLQPLLLWIGAMLICRALDPII 179

Query: 178 LPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFA 237
           LPS+ SQ VKQR+L F+RSLSTVLA AYCLSSLIQQ+Q F  E ND  S+DAR MGF FA
Sbjct: 180 LPSKESQAVKQRLLIFIRSLSTVLASAYCLSSLIQQVQNFFMENND--SSDARTMGFQFA 237

Query: 238 GKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQP 297
           GKAVYTA+WVAAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT+P
Sbjct: 238 GKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRP 297

Query: 298 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 357
           FV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW
Sbjct: 298 FVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 357

Query: 358 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 417
           RIKT+LAISHLDV+K+N+IVADMRKVLAKNPQVEQQRLHRRVFL+ I+PE+Q+L ILVSC
Sbjct: 358 RIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDYIDPENQALLILVSC 417

Query: 418 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPD--LENIPFADTIF 475
           FVKT RFEEYLCVKEAILLDLL VISHH+AR+ATPIRTVQK YS  D  +ENIPFAD IF
Sbjct: 418 FVKTPRFEEYLCVKEAILLDLLRVISHHQARLATPIRTVQKEYSMADMEMENIPFADPIF 477

Query: 476 THSRAAANRPFLLIEPSYKISSDDKIKASTRAA-RNEEK 513
           T S AAANRP LLIEPSYK++ DDK KAST +A +NEEK
Sbjct: 478 TRSSAAANRPLLLIEPSYKMNGDDKTKASTGSACQNEEK 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515716|ref|XP_003526544.1| PREDICTED: uncharacterized protein LOC100777815 [Glycine max]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/523 (71%), Positives = 441/523 (84%), Gaps = 7/523 (1%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSNLYTRQTGKGRL--VHINLSSLAMRRDAWGLNLLSHLC 58
           M C  + QLS ++ + +  G  + +  + G GRL  V INLS   +++D+   +LLS L 
Sbjct: 1   MVCPGSTQLSHDVRLNSNIGFCSFHHNRMGVGRLHLVTINLSPSNLKQDSSAFHLLSRLH 60

Query: 59  GPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALV 118
            P+  + ++CNVFICRSVL PGG     L  +A+ +LTRSYD L+GNP+ L+LIPA  ++
Sbjct: 61  APIRHVPSRCNVFICRSVLIPGGGSGTPLMKSASVILTRSYDALQGNPIFLQLIPAIGII 120

Query: 119 AFAAWGLVPLVRLGRTIFLN-RTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLV 177
           AFA  GL PL+RL R +FL   TD SWK+S +  I+TSY+QPLLLWTG  L+CR LDPLV
Sbjct: 121 AFAVCGLEPLLRLSRVLFLQVSTDISWKKSSSQSIMTSYIQPLLLWTGAMLVCRALDPLV 180

Query: 178 LPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFA 237
           LPSE+SQ VKQR+LNFVRSLSTV++FAYCLSSLIQQ QKF  E ND  S+ ARNMG +FA
Sbjct: 181 LPSESSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEGND--SSGARNMGLDFA 238

Query: 238 GKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQP 297
           GKAVYTAVWVAAVSLFMELLGFSTQ+W+TAGGLGTVLLTLAGREIFTNFLSS+MIHAT+P
Sbjct: 239 GKAVYTAVWVAAVSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSIMIHATRP 298

Query: 298 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 357
           F++NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQK+HW
Sbjct: 299 FIVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKSHW 358

Query: 358 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 417
           RIK+Y+AISHLDV+KVN+IVADMRKVL+KNPQVEQQ+LHRRVFLEN+NPE+Q+L IL+SC
Sbjct: 359 RIKSYIAISHLDVNKVNNIVADMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISC 418

Query: 418 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTH 477
           FVKTS FEEYLCVKEAILLDLL V+SHHRAR+ATPIRTVQKIYSE D ENIPF DTIFT 
Sbjct: 419 FVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADSENIPFGDTIFTR 478

Query: 478 SRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQ 519
           SR AANRPFLLIEP YK++ +DK+KASTR+ R NEEK  ++++
Sbjct: 479 SR-AANRPFLLIEPPYKVNGEDKVKASTRSTRANEEKDSKIDE 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508025|ref|XP_003522763.1| PREDICTED: uncharacterized protein LOC100796022 [Glycine max]

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/522 (70%), Positives = 438/522 (83%), Gaps = 6/522 (1%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSNLYTRQTGKGRL--VHINLSSLAMRRDAWGLNLLSHLC 58
           M C  + +LS ++  Y+  G  + +  + G GRL  V +NLS  ++++D+  L+LLS   
Sbjct: 1   MVCPGSTKLSHDVRFYSNTGFCSFHHNRMGVGRLHLVTLNLSPCSLKQDSSALHLLSRPH 60

Query: 59  GPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALV 118
            P+  + ++CNVFIC+SVL PGG     L  +A+ +LTRSYD L+GNP  L+LIPA  ++
Sbjct: 61  APIRHVPSRCNVFICQSVLIPGGGSGTPLMKSASVILTRSYDALQGNPTFLQLIPAIGII 120

Query: 119 AFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVL 178
           AFA  GL PL+RL R +FL  TD SWK+S + YI+TSY QPLLLWTG  L+CR LDPLVL
Sbjct: 121 AFAVCGLEPLLRLSRVLFLQSTDSSWKKSSSRYIMTSYFQPLLLWTGAMLVCRALDPLVL 180

Query: 179 PSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAG 238
           PSE+SQ VKQR+LNFVRSLSTV++FAYCLSSLIQQ QKF  E ND  S+ ARNMG +FAG
Sbjct: 181 PSESSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEGND--SSGARNMGLDFAG 238

Query: 239 KAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPF 298
           KAVYTAVWVAAVSLFMELLGFSTQ+W+TAGGLGTVLLTLAGREIFTNFLSS+MIHAT+PF
Sbjct: 239 KAVYTAVWVAAVSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPF 298

Query: 299 VINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWR 358
           ++NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQK+HWR
Sbjct: 299 IVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKSHWR 358

Query: 359 IKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCF 418
           IK+Y+AISHLDV+K+N+IVADMRKVL+KNPQVEQQ+LHRRVFLEN+NPE+Q+L IL+SCF
Sbjct: 359 IKSYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISCF 418

Query: 419 VKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHS 478
           VKTS FEEYLCVKEAILLDLL V+SHHRAR+ATPIRTVQKIYSE D ENIPF DTIFT S
Sbjct: 419 VKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADSENIPFGDTIFTRS 478

Query: 479 RAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQ 519
            +A NRPFLLIEP YK++ +DK K STR+ R +EEK  R+++
Sbjct: 479 -SAGNRPFLLIEPLYKVNGEDKTKPSTRSTRASEEKDFRIDE 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469783|ref|XP_004152598.1| PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like [Cucumis sativus]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/522 (71%), Positives = 437/522 (83%), Gaps = 7/522 (1%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSNLYTRQTGKGRL--VHINLSSLAMRRDAWGLNLLSHLC 58
           M    + Q S +L I +  GC+ L+    GK RL  V I  +SL +R +   L LL  + 
Sbjct: 1   MVHPGSTQFSHKLGIQSVHGCNKLHISVKGKARLHLVTIVPTSLGLRHNPGSLQLLRSVS 60

Query: 59  GPLNPISTKCNVFICRSVL-APGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAAL 117
            P+ P+S++ NVF+CRSVL + GG    VLKSAA  VLTRS D LR NP++L+LIPAA +
Sbjct: 61  RPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAV-VLTRSCDALRSNPLLLKLIPAACV 119

Query: 118 VAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLV 177
           +AFAAWG+ PL+RLGR +FL+  DGSWK+S T+Y+ TSY+QPLLLWTG TLICR LDP+V
Sbjct: 120 IAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVV 179

Query: 178 LPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFA 237
           LPS  SQ VKQR+LNFVRSLSTVLAFAYCLSSLIQQ+QKF  E+ND    DARNMGF+FA
Sbjct: 180 LPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFAYESNDPG--DARNMGFDFA 237

Query: 238 GKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQP 297
           GKAVYTAVW+AA+SLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT+P
Sbjct: 238 GKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRP 297

Query: 298 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 357
           FV+NEWIQTKI GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTV++VRNL+QKTHW
Sbjct: 298 FVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHW 357

Query: 358 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 417
           RIKT+LAISHLDV+K+N IVADMRKVL+KNPQVEQQRLHRR+FL+N+NPE+Q+L I+VSC
Sbjct: 358 RIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSC 417

Query: 418 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTH 477
           FVKTSRFEEYLCVKEAILLDLL VISHHRAR+ATPIRTVQKIY E DLEN+PF++T+++ 
Sbjct: 418 FVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSR 477

Query: 478 SRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQ 519
           S  A NRP LLIEPSYK++ DDK K S+R  R+  + +   Q
Sbjct: 478 S-GATNRPLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAKQ 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142063|emb|CBI19266.3| unnamed protein product [Vitis vinifera]

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/510 (74%), Positives = 434/510 (85%), Gaps = 8/510 (1%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSNLYTRQTGKGRL--VHINLSSLAMRRDAWGLNLLSHLC 58
           M  + +MQLS+EL I N+ G SN       K RL  + I LSS A R+DA  L+LL+ + 
Sbjct: 1   MALAGSMQLSRELGIQNRHGYSNQPKIMMAKDRLHLLSITLSSHASRQDALSLHLLNSMR 60

Query: 59  GPLNPISTKCNVFICRSVLAPGGI-DIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAAL 117
           G + P+S++C  F+CRS LAPGG  +I VLKSAA  VLTRS + LRG P++L+L+PA ++
Sbjct: 61  GSITPVSSRCEFFLCRSFLAPGGGNEISVLKSAAL-VLTRSCNALRGRPLVLQLVPAVSI 119

Query: 118 VAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLV 177
           VAFAAWGL PL+RL R +FLN+TD SWK+S T+Y+LT YLQPLLLW G  LICR LDP++
Sbjct: 120 VAFAAWGLGPLMRLSRNLFLNKTDSSWKKSSTYYVLTYYLQPLLLWIGAMLICRALDPII 179

Query: 178 LPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFA 237
           LPS+ SQ VKQR+L F+RSLSTVLA AYCLSSLIQQ+Q F  E ND  S+DAR MGF FA
Sbjct: 180 LPSKESQAVKQRLLIFIRSLSTVLASAYCLSSLIQQVQNFFMENND--SSDARTMGFQFA 237

Query: 238 GKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQP 297
           GKAVYTA+WVAAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT+P
Sbjct: 238 GKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRP 297

Query: 298 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 357
           FV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW
Sbjct: 298 FVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 357

Query: 358 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 417
           RIKT+LAISHLDV+K+N+IVADMRKVLAKNPQVEQQRLHRRVFL+ I+PE+Q+L ILVSC
Sbjct: 358 RIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDYIDPENQALLILVSC 417

Query: 418 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPD--LENIPFADTIF 475
           FVKT RFEEYLCVKEAILLDLL VISHH+AR+ATPIRTVQK YS  D  +ENIPFAD IF
Sbjct: 418 FVKTPRFEEYLCVKEAILLDLLRVISHHQARLATPIRTVQKEYSMADMEMENIPFADPIF 477

Query: 476 THSRAAANRPFLLIEPSYKISSDDKIKAST 505
           T S AAANRP LLIEPSYK++ DDK KAST
Sbjct: 478 TRSSAAANRPLLLIEPSYKMNGDDKTKAST 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116268423|gb|ABJ96380.1| expressed protein [Prunus persica]

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/480 (78%), Positives = 423/480 (88%), Gaps = 18/480 (3%)

Query: 45  RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGID-IPVLKSAAAAVLTRSYDTLR 103
           R+ A  LNLLS + GP+ P+S++CNVF+CRSVL PGG + +P+LKSAA  VLTRSYD LR
Sbjct: 27  RQGACSLNLLSSVRGPIGPVSSRCNVFLCRSVLVPGGGNGVPLLKSAAV-VLTRSYDALR 85

Query: 104 GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 163
           G+PV+L+LIPA A++AFA WGL PL+RLGR IFL R D +W +SR+HY++ SYL+PLLLW
Sbjct: 86  GSPVLLKLIPAVAIIAFAVWGLGPLLRLGRIIFLQRNDSTWNKSRSHYVMNSYLRPLLLW 145

Query: 164 TGVTLIC-------------RELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSL 210
           TG TL+C             R LDP+VLPSE SQ VKQR++NFV+SLSTVLAFAYCLSSL
Sbjct: 146 TGATLMCSHFICANCCKVYFRALDPVVLPSEASQAVKQRLINFVQSLSTVLAFAYCLSSL 205

Query: 211 IQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGL 270
            QQ QKF TE   +D +D+RNMGFNFAGKAVY+AVWVAAVSLFMELLGFSTQ+WLTAGGL
Sbjct: 206 NQQAQKFFTET--SDPSDSRNMGFNFAGKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGL 263

Query: 271 GTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRG 330
           GTVLLTLAGREIFTNFLSSVMIHAT+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRG
Sbjct: 264 GTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRG 323

Query: 331 DDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQV 390
           DDREAVHIPNHKFTVNVVRNLSQKTHWRIKT+LAISHLDV K+N+IVADMRKVLAKN QV
Sbjct: 324 DDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVIKINTIVADMRKVLAKNSQV 383

Query: 391 EQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVK-EAILLDLLHVISHHRARM 449
           EQQRLHRRVFL+NINP++Q+L ILVSCFVKTS FEEYLCVK EAILLDLL V+SHHRAR+
Sbjct: 384 EQQRLHRRVFLDNINPDNQALMILVSCFVKTSHFEEYLCVKEEAILLDLLRVVSHHRARL 443

Query: 450 ATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR 509
           ATPIRTVQK YSE DLEN+PFADTIFTHSRA+ NRP+LLIEPSYKISSDDK KAS+R  R
Sbjct: 444 ATPIRTVQKYYSEADLENVPFADTIFTHSRASNNRPYLLIEPSYKISSDDKSKASSRPTR 503

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508955|ref|XP_004163453.1| PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like [Cucumis sativus]

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/476 (75%), Positives = 414/476 (86%), Gaps = 5/476 (1%)

Query: 45  RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVL-APGGIDIPVLKSAAAAVLTRSYDTLR 103
           R +   L LL  +  P+ P+S++ NVF+CRSVL + GG    VLKSAA  VLTRS D LR
Sbjct: 22  RHNPGSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAV-VLTRSCDALR 80

Query: 104 GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 163
            NP++L+LIPAA ++AFAAWG+ PL+RLGR +FL+  DGSWK+S T+Y+ TSY+QPLLLW
Sbjct: 81  SNPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLW 140

Query: 164 TGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAND 223
           TG TLICR LDP+VLPS  SQ VKQR+LNFVRSLSTVLAFAYCLSSLIQQ+QKF  E+ND
Sbjct: 141 TGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFAYESND 200

Query: 224 ADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIF 283
               DARNMGF+FAGKAVYTAVW+AA+SLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIF
Sbjct: 201 PG--DARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 258

Query: 284 TNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 343
           TNFLSSVMIHAT+PFV+NEWIQTKI GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF
Sbjct: 259 TNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 318

Query: 344 TVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 403
           TV++VRNL+QKTHWRIKT+LAISHLDV+K+N IVADMRKVL+KNPQVEQQRLHRR+FL+N
Sbjct: 319 TVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDN 378

Query: 404 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEP 463
           +NPE+Q+L I+VSCFVKTSRFEEYLCVKEAILLDLL VISHHRAR+ATPIRTVQKIY E 
Sbjct: 379 VNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEA 438

Query: 464 DLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQ 519
           DLEN+PF++T+++ S  A NRP LLIEPSYK++ DDK K S+R  R+  + +   Q
Sbjct: 439 DLENVPFSETMYSRS-GATNRPLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAKQ 493

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465255|ref|XP_003602909.1| MscS family inner membrane protein ynaI [Medicago truncatula] gi|355491957|gb|AES73160.1| MscS family inner membrane protein ynaI [Medicago truncatula]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/526 (67%), Positives = 431/526 (81%), Gaps = 13/526 (2%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSNLYTR----QTGKGRLVHINLSSLAMRRDAWGLNLLSH 56
           M    +MQ S+++ +         +      + G+  LV  NL    +++D+   +LL  
Sbjct: 12  MAYPGSMQFSRDVRLKTSNNGPRSFQHHNPARVGRLHLVTTNLLPRTLKQDSLSHHLLRI 71

Query: 57  LCGPLNPISTKCNVFICRSVLAPGGIDI-PVLKSAAAAVLTRSYDTLRGNPVILRLIPAA 115
              P     ++C+VF+CRS + PGG      L  +A+ +LTRSYD+L G+P++LRLIPA 
Sbjct: 72  RHAP-----SRCSVFVCRSAILPGGGGSGTALIKSASVLLTRSYDSLLGSPILLRLIPAL 126

Query: 116 ALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDP 175
            ++AFA +G+ PL+RL R +F  RTD SWK+S + Y++TSY QPLLLWTG  LICR LDP
Sbjct: 127 GIIAFAVYGIEPLLRLSRILFFQRTDSSWKKSSSRYVMTSYFQPLLLWTGAMLICRALDP 186

Query: 176 LVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFN 235
           ++LPS+TSQ VKQR+LNFVRSLSTV++FAYCLSSLIQQ QKF  +AN+  S+DARNMG +
Sbjct: 187 IILPSQTSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLDANE--SSDARNMGLD 244

Query: 236 FAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT 295
           FAGKA+YTAVWVAAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIFTNFLSS+MIH T
Sbjct: 245 FAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHTT 304

Query: 296 QPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKT 355
           +PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNL+QK+
Sbjct: 305 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLTQKS 364

Query: 356 HWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILV 415
           HWRIK+Y++ISHLDV+K+N+IVADMRKVLAKNPQVEQQ+LHRRVFLE+INPE+ +L IL+
Sbjct: 365 HWRIKSYISISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLEDINPENTALKILI 424

Query: 416 SCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIF 475
           SCFVKTS FEEYLCVKEAILLDLL V+SHHRAR+ATPIRTVQKIYSEP  ENIPF D+IF
Sbjct: 425 SCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEPASENIPFGDSIF 484

Query: 476 THSRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQP 520
           T SRAA NRPFLLIEP YK++ +DK K STR+ R NEEK  ++++P
Sbjct: 485 TRSRAAVNRPFLLIEPPYKVNGEDKAKPSTRSTRGNEEKDAKVDEP 530

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	545
TAIR|locus:2015297	678	MSL3 "MSCS-like 3" [Arabidopsi	0.902	0.725	0.620	4.2e-166
TAIR|locus:2142414	673	MSL2 "MSCS-like 2" [Arabidopsi	0.943	0.763	0.586	4.8e-158
UNIPROTKB|P0AEB5	343	ynaI "mechanosensitive channel	0.466	0.740	0.279	3e-22
UNIPROTKB|Q83CN5	383	CBU_1075 "Mechanosensitive ion	0.387	0.550	0.242	9e-16
TIGR_CMR|CBU_1075	383	CBU_1075 "membrane protein, pu	0.387	0.550	0.242	9e-16
TIGR_CMR|CJE_0289	627	CJE_0289 "mechanosensitive ion	0.343	0.298	0.223	0.00048

TAIR|locus:2015297 MSL3 "MSCS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
 Identities = 311/501 (62%), Positives = 382/501 (76%)

Query:     7 MQLSQELNIYNKFGCSNLYTRQTGKGR--LVHINLSSLAMRRDAWGLNLLSHLCGPLNPI 64
             + LS +LN++     S  +    GK R  L    LSS A R+D W L LL  L G + P+
Sbjct:     8 LPLSHDLNVHKIHEASGFHNSAAGKNRVYLTRTGLSSCATRQDVWSLQLLESLSGSIVPV 67

Query:    65 STKCNVFICRSVLAPG-GIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPXXXXXXXXXW 123
             S++CN F+CRS L+PG G + P+LKS A  + TR YD L GNP +++LIP         W
Sbjct:    68 SSRCNAFVCRSALSPGNGNEGPILKSTAV-IFTRVYDALGGNPHLVKLIPAVGILAFATW 126

Query:   124 GLVPLVRLGRT-IFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSET 182
             GL PL+RL RT +F    D + ++S T YI+ SYLQPLLLW+G  L+CR LDP+VLPS  
Sbjct:   127 GLRPLLRLARTTLFEKGNDANSQKSSTQYIVVSYLQPLLLWSGAILLCRTLDPIVLPSSA 186

Query:   183 SQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVY 242
              Q +KQR+L F RS+STVLAF+ CLSSL+QQ+QKF  E N+    D RNMGF+FAGKAVY
Sbjct:   187 GQAIKQRLLIFARSISTVLAFSCCLSSLLQQVQKFFMETNNP--ADTRNMGFSFAGKAVY 244

Query:   243 TAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQPFVINE 302
             TA WVAA SLFMELLGFSTQ+W               REI TNFLSS+MIHAT+PFV+NE
Sbjct:   245 TAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNE 304

Query:   303 WIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTY 362
             WIQTKI GYEVSGTVE VGWWSPTIIRGDDREAVHIPNH+F+VN+VRNL+QKTHWRIKT+
Sbjct:   305 WIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNLTQKTHWRIKTH 364

Query:   363 LAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTS 422
             LAISHLDV K+N+IVADMRKVL+KNPQ+EQQ++HRRVFLE+I+PE+Q+L IL+SCFVKTS
Sbjct:   365 LAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHRRVFLEDIDPENQALRILISCFVKTS 424

Query:   423 RFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAA 482
             RFEEYLCVKEA+LLDLL VI HH AR+ATPIRTVQ++ +E +++   F+D +F  ++AA 
Sbjct:   425 RFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQRMRNEAEVDTAGFSDIVF--NQAAM 482

Query:   483 NRPFLLIEPSYKISSDDKIKA 503
             NR ++LIEPSYKI+SDD  K+
Sbjct:   483 NRRYMLIEPSYKINSDDNSKS 503

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IGI

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0009526 "plastid envelope" evidence=IDA

GO:0009657 "plastid organization" evidence=IGI

GO:0010020 "chloroplast fission" evidence=IGI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2142414 MSL2 "MSCS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1540 (547.2 bits), Expect = 4.8e-158, P = 4.8e-158
 Identities = 310/529 (58%), Positives = 386/529 (72%)

Query:     1 MTCSSTMQLSQELNIY-NKFGCSNLYTRQTGKGRLVHINLS--SLAMRRDAWGLN--LLS 55
             M    T+QLS  L +  N+  C+      +   R +HI+    SL +     G +  LLS
Sbjct:     1 MALYGTLQLSHSLGLCRNQRFCN---PENSAMRRRLHISNGPLSLGVPLGQHGFSNILLS 57

Query:    56 -HLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPX 114
              +L  P+  +  +   F C S  A G    P +K A   VLT+S+  ++  P + +L+P 
Sbjct:    58 NYLRRPICSVPCRTTAFRCHSFSASGKAIEPAVK-AVTVVLTKSHGLMQQFPFVYKLVPA 116

Query:   115 XXXXXXXXWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELD 174
                     WGLVP  R GR I LN+ D  WK+S T++++TSY+QPLLLW G   ICR LD
Sbjct:   117 VALLVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRALD 176

Query:   175 PLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGF 234
             P+VLP+E S+ VK R+LNFVRSLSTVLAFAYCLSSLIQQ QK  +E ++   +D RNMGF
Sbjct:   177 PVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSETSNP--SDTRNMGF 234

Query:   235 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHA 294
              FAGKA+Y+AVWVAAVSLFMELLGFSTQ+W               REI TNFLSSVMIHA
Sbjct:   235 QFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHA 294

Query:   295 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQK 354
             T+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRG+DREA+HIPNHKFTVNVVRNL+QK
Sbjct:   295 TRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQK 354

Query:   355 THWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNIL 414
             THWRIKT+LAISHLDV+K+N+IVADMRKVLAKNP VEQQRLHRRVFLEN+ PE+Q+L+IL
Sbjct:   355 THWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSIL 414

Query:   415 VSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTI 474
             +SCFVKTS  EEYL VKEAILLDLL VISHHRAR+ATPIRT++K+Y+E D+EN PF +++
Sbjct:   415 ISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESM 474

Query:   475 FTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQPQN 522
             +      + RP +LIEP+YKI+ +DK K+  RAA+   E+  + + P++
Sbjct:   475 Y--GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQENKGSNPKS 521

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IGI

GO:0009526 "plastid envelope" evidence=IDA

GO:0009657 "plastid organization" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IGI

UNIPROTKB|P0AEB5 ynaI "mechanosensitive channel YnaI monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 265 (98.3 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 75/268 (27%), Positives = 128/268 (47%)

Query:   190 VLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAA 249
             V++F+ +    +     L  LI Q +K   +    D T AR M      + +   + V  
Sbjct:    77 VIDFICTSLIAVILTIKLFLLINQFEKQQIKKG-RDITSARIMS-----RIIKITIIVVL 130

Query:   250 VSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQPFVINEWIQTKIQ 309
             V L+ E  G S                   ++I +NF S +M++  +PF I +WI++  +
Sbjct:   131 VLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDR 190

Query:   310 GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLD 369
               E  GTV  +GW    I   D+R  +++PN  F+   V N  + T+ RI T + + + D
Sbjct:   191 NIE--GTVAEIGWRITKITTFDNRP-LYVPNSLFSSISVENPGRMTNRRITTTIGLRYED 247

Query:   370 VHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINP-ESQSLNILVSCFVKTSRFEEYL 428
               KV  IV  +R++L  +P ++Q    R+  L   N     SLNI+V CF KT+ + E+L
Sbjct:   248 AAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWL 303

Query:   429 CVKEAILLDLLHVISHHRARMATPIRTV 456
               ++ + L ++ ++  H A  A P +T+
Sbjct:   304 AAQQDVYLKIIDIVQSHGADFAFPSQTL 331

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071470 "cellular response to osmotic stress" evidence=IGI

GO:0005887 "integral to plasma membrane" evidence=RCA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=IGI;ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q83CN5 CBU_1075 "Mechanosensitive ion channel" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 223 (83.6 bits), Expect = 9.0e-16, P = 9.0e-16
 Identities = 53/219 (24%), Positives = 112/219 (51%)

Query:   240 AVYTAVWVAAVSLFMEL--LGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQP 297
             A  T V + A  L M L  +G                     ++   NF   +MI+  +P
Sbjct:   136 AQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVIGFAAKDTLGNFFGGMMIYWDRP 195

Query:   298 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 357
             F + +WI++  +  ++ GTVE++GW   T IR  D+ ++++PN   +   V N S+ T+ 
Sbjct:   196 FSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVPNGILSNVAVENPSRMTNR 252

Query:   358 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 417
             R+K  + + + D  K+  +   + ++L  +P+++   + + +F+        SLN++V  
Sbjct:   253 RLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTLFVNLFEFAPSSLNMMVYT 309

Query:   418 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV 456
             F KT+ + ++  +++ I+L ++++I+ + A  A P +T+
Sbjct:   310 FTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1075 CBU_1075 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 223 (83.6 bits), Expect = 9.0e-16, P = 9.0e-16
 Identities = 53/219 (24%), Positives = 112/219 (51%)

Query:   240 AVYTAVWVAAVSLFMEL--LGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQP 297
             A  T V + A  L M L  +G                     ++   NF   +MI+  +P
Sbjct:   136 AQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVIGFAAKDTLGNFFGGMMIYWDRP 195

Query:   298 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 357
             F + +WI++  +  ++ GTVE++GW   T IR  D+ ++++PN   +   V N S+ T+ 
Sbjct:   196 FSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVPNGILSNVAVENPSRMTNR 252

Query:   358 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 417
             R+K  + + + D  K+  +   + ++L  +P+++   + + +F+        SLN++V  
Sbjct:   253 RLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTLFVNLFEFAPSSLNMMVYT 309

Query:   418 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV 456
             F KT+ + ++  +++ I+L ++++I+ + A  A P +T+
Sbjct:   310 FTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|CJE_0289 CJE_0289 "mechanosensitive ion channel family protein" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 115 (45.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
 Identities = 45/201 (22%), Positives = 81/201 (40%)

Query:   235 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHA 294
             N   K +Y  + + A+   +  LGF+                   ++I  NF +S+++  
Sbjct:   368 NLIIKILYFVIIIIALLYILAQLGFNISAIIASLGIGGLAVALAAKDIIANFFASILLLF 427

Query:   295 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQK 354
                F   +W++  + G E  GTV   G    T IR  D   V +PN       ++N S++
Sbjct:   428 DNSFNQGDWVE--VSGIE--GTVVETGL-RKTTIRTFDNCLVFLPNSTIMGANIKNWSKR 482

Query:   355 THWR-IKTYLAISH-LDVHKVNSIVADMRKVLAKNPQV---EQQRL----HRRVFLENIN 405
                R ++ YL + +     K+   V D+R+ L  +  V   E   L    H   + +N+ 
Sbjct:   483 RMGRHVRMYLGVGYDATPEKLEQCVKDLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLV 542

Query:   406 PESQSLNILVSCFVKTSRFEE 426
               +       +C+V  S F +
Sbjct:   543 SINDLEGYKNACYVALSEFAD 563

GO:0005216 "ion channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7W1	MSL3_ARATH	No assigned EC number	0.6586	0.9027	0.7256	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	545
pfam00924	202	pfam00924, MS_channel, Mechanosensitive ion channe	9e-23
COG0668	316	COG0668, MscS, Small-conductance mechanosensitive	8e-17

>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel

 Score = 95.7 bits (239), Expect = 9e-23
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 10/197 (5%)

Query: 241 VYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVI 300
           +   + V  + + +  LG +    L   G   + L  A +++ +N +S ++I   +PF I
Sbjct: 2   LKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEKPFKI 61

Query: 301 NEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIK 360
            +WI+      +V GTVE +G  S T IR  D   V IPN K   + + NLS+    R++
Sbjct: 62  GDWIEIG----DVEGTVEDIGIRS-TTIRTFDGRLVTIPNSKILTSNIINLSRSPTRRVE 116

Query: 361 TYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFV 419
             + +++  D  K+  ++  +++   ++P V  +     V          SLN  V  +V
Sbjct: 117 VSIGVAYSSDPKKLEKVIEILKEAAYEHPLV-LKDPEPPVVFGEFGDS--SLNFEVRVWV 173

Query: 420 KTSRFEEYLCVKEAILL 436
           KT    EY  V+  + L
Sbjct: 174 KT-LPGEYFNVRSELNL 189

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202

>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 81.1 bits (200), Expect = 8e-17
 Identities = 56/269 (20%), Positives = 113/269 (42%), Gaps = 14/269 (5%)

Query: 190 VLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGF-NFAGKAVYTAVWVA 248
           +   +  L  +L     ++ L++ + + L          AR      F    +   + V 
Sbjct: 39  LRKLLLLLLILLIAFLLIAYLVKLLLRSLLLLKALIRRLARETTLSVFLSNLLRILILVV 98

Query: 249 AVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKI 308
           A+ + + +LG      L   G   + + LA +++ +N ++ + +   +PF + +WI+   
Sbjct: 99  ALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI-- 156

Query: 309 QGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAIS-H 367
            G  V GTVE +G  S T IR  D   V IPN K     V N S++   R++  + ++  
Sbjct: 157 -GSGVEGTVEDIGLRS-TTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYD 214

Query: 368 LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEY 427
            D+ K   I   +++VL + P+V +      + +  +      +NI V  +      E+ 
Sbjct: 215 SDLEKALKI---LKEVLEELPEVLKIEPEPVIGVSELG--DSGINIRVRFWTNP---EDL 266

Query: 428 LCVKEAILLDLLHVISHHRARMATPIRTV 456
             V+  + L +   +      +  P ++V
Sbjct: 267 WSVQRELNLRIKEALEEAGIEIPYPQQSV 295

Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	545
PRK10334	286	mechanosensitive channel MscS; Provisional	100.0
PRK11465	741	putative mechanosensitive channel protein; Provisi	100.0
PRK11281	1113	hypothetical protein; Provisional	100.0
PRK10929	1109	putative mechanosensitive channel protein; Provisi	100.0
COG3264	835	Small-conductance mechanosensitive channel [Cell e	100.0
PF00924	206	MS_channel: Mechanosensitive ion channel; InterPro	100.0
COG0668	316	MscS Small-conductance mechanosensitive channel [C	100.0
KOG4629	714	consensus Predicted mechanosensitive ion channel [	99.82

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=100.00  E-value=5e-45  Score=371.65  Aligned_cols=251  Identities=18%  Similarity=0.252  Sum_probs=224.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 009063          191 LNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGL  270 (545)
Q Consensus       191 ~~~i~~l~~i~~~~~~~~~li~~~~~~~~~~~~~~~~~~r~~~i~~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi  270 (545)
                      ++++.++ ++++++|++.++++...+...++...     +.+..+++.++++++++++++++++..+|++.++++|++|+
T Consensus        29 ~~i~~al-~il~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~  102 (286)
T PRK10334         29 VNIVAAL-AIIIVGLIIARMISNAVNRLMISRKI-----DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA  102 (286)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            3444444 45577888888888776555444331     22346788999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEE
Q 009063          271 GTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRN  350 (545)
Q Consensus       271 ~glalgfAaqd~l~N~~aGi~I~~~rpf~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N  350 (545)
                      +|+++|||+|++++|++||++|+++|||++||||++    +|.+|+|++|++++ |++|++||+.++|||+.+.++.|+|
T Consensus       103 ~glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i----~~~~G~V~~I~~r~-T~i~t~d~~~v~IPNs~~~~~~i~N  177 (286)
T PRK10334        103 AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIIN  177 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEcchHhcCCeeEE
Confidence            999999999999999999999999999999999999    78999999999999 9999999999999999999999999


Q ss_pred             cccCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeeCCCCCeEEEEEEEEEecCChhhHHH
Q 009063          351 LSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLC  429 (545)
Q Consensus       351 ~sr~~~~ri~~~l~V~y-td~~~i~~i~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~  429 (545)
                      ||+++.+|+.+.++++| +|+++++++   ++++++++|.+.++|. |.+.+.+++  |+++++++++|+++.+   +++
T Consensus       178 ~s~~~~rr~~~~v~V~y~~d~~~~~~i---l~~~~~~~~~vl~~p~-p~v~~~~~~--dssi~~~v~~wv~~~~---~~~  248 (286)
T PRK10334        178 FSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDRE-MTVRLNELG--ASSINFVVRVWSNSGD---LQN  248 (286)
T ss_pred             cCCCCeEEEEEEEEecCCCCHHHHHHH---HHHHHHhCCceecCCC-CEEEEEeee--CceEEEEEEEEEecch---hHH
Confidence            99988899999999999 899999998   8899999999988764 789999999  8899999999999754   678


Q ss_pred             HHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 009063          430 VKEAILLDLLHVISHHRARMATPIRTVQKIYS  461 (545)
Q Consensus       430 ir~~i~~~i~~~l~~~gI~ia~P~~~l~~~~~  461 (545)
                      +++++++++++.|+++||++|||+++++....
T Consensus       249 ~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~~~  280 (286)
T PRK10334        249 VYWDVLERIKREFDAAGISFPYPQMDVNFKRV  280 (286)
T ss_pred             HHHHHHHHHHHHHHHCCCcCCCCCeEEEeccC
Confidence            99999999999999999999999999998653

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=9.7e-43  Score=387.23  Aligned_cols=298  Identities=13%  Similarity=0.152  Sum_probs=231.2

Q ss_pred             cccCccccchhHHHHHHhhHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 009063          139 RTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQ-IQKF  217 (545)
Q Consensus       139 ~~~~~~~~s~~~~il~~~~~Pl~l~l~~~~i~~al~~~~l~~~~~~~i~~~l~~~i~~l~~i~~~~~~~~~li~~-~~~~  217 (545)
                      ++.+.|++    .+++.++ |+.+++.+++++.++..+.++..........+.+.+..++++++++++.+.+.+. +.++
T Consensus       417 ~r~~~~~~----~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~  491 (741)
T PRK11465        417 KRLNGWLS----AALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENR  491 (741)
T ss_pred             HHHhhhhH----HHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455655    4666666 9988888888888877554433111111122333333333444334444444332 2333


Q ss_pred             HHhhc--cCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Q 009063          218 LTEAN--DADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT  295 (545)
Q Consensus       218 ~~~~~--~~~~~~~r~~~i~~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi~glalgfAaqd~l~N~~aGi~I~~~  295 (545)
                      +.+..  +..+....++..+++++++++++++++++++|+.+|+++++++|++|++|+++|||+|++++|+++|++|+++
T Consensus       492 l~~~~~~~~~~~~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e  571 (741)
T PRK11465        492 LASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFE  571 (741)
T ss_pred             HhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            32221  1112233457789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcccCCceEEEEEEEecc-CCHHHHH
Q 009063          296 QPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVN  374 (545)
Q Consensus       296 rpf~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~ri~~~l~V~y-td~~~i~  374 (545)
                      |||++||||++    +|++|+||+|++|+ |++|++||+.++|||+++.+  |+||||. ..+..++++|+| +|.|+++
T Consensus       572 ~pf~vGD~I~v----~g~~GtVe~I~lRs-T~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~  643 (741)
T PRK11465        572 NGMNTGDLVTI----GPLTGTVERMSIRS-VGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKAN  643 (741)
T ss_pred             CCcCCCCEEEE----CCeEEEEEEEeeeE-EEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHH
Confidence            99999999999    78999999999999 99999999999999999974  9999986 557888999999 8999999


Q ss_pred             HHHHHHHHHHHcCCCc----cccccceEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccC
Q 009063          375 SIVADMRKVLAKNPQV----EQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMA  450 (545)
Q Consensus       375 ~i~~~l~e~l~~~p~i----~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~~l~~~gI~ia  450 (545)
                      ++++++.+.+.++|++    .+++  +.+.+.+++  |+++++++++|+++   .++|++++++++++++.|+++||++|
T Consensus       644 ~iL~ev~~el~~dpe~~~~il~~p--~~vgV~~lg--dSsi~lrvr~~t~p---~~qw~v~rel~~~IK~~Fde~GIeIP  716 (741)
T PRK11465        644 QALKDAVAELMENEEIRGLIIGEP--NFAGIVGLT--NTAFTLRVSFTTLP---LKQWTVRFALDSQVKKHFDLAGVRAP  716 (741)
T ss_pred             HHHHHHHHHhhcCccccccccCCC--CeEEEEEec--CceEEEEEEEEECc---chHHHHHHHHHHHHHHHHHHCCCCCC
Confidence            9987777777777764    2333  357889998  88999999999976   46799999999999999999999987


Q ss_pred             CCceEE
Q 009063          451 TPIRTV  456 (545)
Q Consensus       451 ~P~~~l  456 (545)
                      +|+..+
T Consensus       717 ~~tv~v  722 (741)
T PRK11465        717 VQTYQV  722 (741)
T ss_pred             CCceEe
Confidence            665543

>PRK11281 hypothetical protein; Provisional

Probab=100.00  E-value=6.4e-40  Score=380.14  Aligned_cols=253  Identities=19%  Similarity=0.206  Sum_probs=223.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q 009063          190 VLNFVRSLSTVLAFAYCLSSLIQQIQKFL-TEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAG  268 (545)
Q Consensus       190 l~~~i~~l~~i~~~~~~~~~li~~~~~~~-~~~~~~~~~~~r~~~i~~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~  268 (545)
                      +.+++.++ ++++++|++.+.+..+.+.+ .++...++     .....+.++++++++++++++++..+|++.+++.+.+
T Consensus       836 l~~Ll~al-lIl~i~~~l~r~l~~ll~~~~~~rl~l~~-----~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~  909 (1113)
T PRK11281        836 LGNLLFAL-IILVVTYVLVRNLPGLLEVLVLSRLNLRQ-----GTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLV  909 (1113)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence            34444444 45577888888887765433 33322112     1246678999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcCCccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeE
Q 009063          269 GLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVV  348 (545)
Q Consensus       269 Gi~glalgfAaqd~l~N~~aGi~I~~~rpf~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I  348 (545)
                      |++|+++|||+|++++||+||++|+++|||++||+|++    ++.+|+|++|++|+ |+++|+||+.++|||+.+.++.|
T Consensus       910 gaLgVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I----~~~~G~V~~I~lRs-T~Irt~D~~~ViIPNs~~~t~~I  984 (1113)
T PRK11281        910 AALSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTI----GTFSGTVSKIRIRA-TTITDFDRKEVIVPNKAFVTERL  984 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEechhhhcCce
Confidence            99999999999999999999999999999999999999    78999999999999 99999999999999999999999


Q ss_pred             EEcccCC-ceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeeCCCCCeEEEEEEEEEecCChhh
Q 009063          349 RNLSQKT-HWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEE  426 (545)
Q Consensus       349 ~N~sr~~-~~ri~~~l~V~y-td~~~i~~i~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~  426 (545)
                      +|||.++ .+|+.++++|+| +|+++++++   +.++++++|.+.++|. |.|++.+|+  ++++++++++|+++.  .+
T Consensus       985 iN~S~~~~~~Rv~i~vgV~Y~sDi~~v~~i---L~eaa~~~p~Vl~~P~-P~V~~~~fg--dssi~~~lr~wv~~~--~~ 1056 (1113)
T PRK11281        985 INWSLSDTVTRVVIKVGVAYGSDLEKVREL---LLQAATENPRVMKEPE-PQVFFLNFG--ASTLDHELRLYVREL--GD 1056 (1113)
T ss_pred             EeCCCCCcceEEEEEEEeCCCCCHHHHHHH---HHHHHHcCcccccCCC-CEEEEEecc--CceEEEEEEEEEcCH--hh
Confidence            9999987 478999999999 899999999   8999999999998875 799999999  899999999999864  57


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 009063          427 YLCVKEAILLDLLHVISHHRARMATPIRTVQKIYS  461 (545)
Q Consensus       427 ~~~ir~~i~~~i~~~l~~~gI~ia~P~~~l~~~~~  461 (545)
                      ++.++++++.+|++.|+++||++|||++++++...
T Consensus      1057 ~~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~~~ 1091 (1113)
T PRK11281       1057 RSPTVDELNRRIDRLFRENDINIAFNQLDVFLKNQ 1091 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcCCCCCeeEEecCC
Confidence            89999999999999999999999999999998764

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=1.5e-39  Score=375.77  Aligned_cols=251  Identities=16%  Similarity=0.149  Sum_probs=221.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 009063          192 NFVRSLSTVLAFAYCLSSLIQQIQK-FLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGL  270 (545)
Q Consensus       192 ~~i~~l~~i~~~~~~~~~li~~~~~-~~~~~~~~~~~~~r~~~i~~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi  270 (545)
                      +++.++ ++++++|++.+.+..+.+ .+.++.+.++     ....++.+++++++++++++++++.+|++.+++.+.+|+
T Consensus       835 ~ll~Al-lIliv~~~l~r~l~~lle~~l~~~~~l~~-----~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~ga  908 (1109)
T PRK10929        835 SVLIAI-LVFIITTQLVRNLPALLELALLQHLDLTP-----GTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAA  908 (1109)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCh-----hHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            344444 455677777777776544 4434433222     235778899999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEE
Q 009063          271 GTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRN  350 (545)
Q Consensus       271 ~glalgfAaqd~l~N~~aGi~I~~~rpf~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N  350 (545)
                      +|+++|||+|++++||+||++|+++|||++||+|++    +|.+|+|++|++|+ |+++|+||+.++|||+.+.++.|+|
T Consensus       909 lGVgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I----~~~~GtV~~I~lRs-T~Irt~Dg~~IiIPNs~~it~~IiN  983 (1109)
T PRK10929        909 LGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTI----RDLTGSVTKINTRA-TTISDWDRKEIIVPNKAFITEQFIN  983 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEE----CCEEEEEEEEeeeE-EEEEeCCCCEEEEEChhhhcCceEe
Confidence            999999999999999999999999999999999999    78999999999999 9999999999999999999999999


Q ss_pred             cccCCc-eEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeeCCCCCeEEEEEEEEEecCChhhHH
Q 009063          351 LSQKTH-WRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYL  428 (545)
Q Consensus       351 ~sr~~~-~ri~~~l~V~y-td~~~i~~i~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~  428 (545)
                      ||+++. +|+.+.++|+| +|+++++++   +.++++++|.+.++|. |.|++.+++  ++++++++++|++..  .+++
T Consensus       984 ~S~~d~~~Rv~i~VgV~Y~sDie~v~~i---L~eaa~~~~~VL~~P~-P~V~~~~fg--dssi~~elr~wv~~~--~~~~ 1055 (1109)
T PRK10929        984 WSLSDSVTRVVLTIPAPADANSEEVTEI---LLTAARRCSLVLDNPA-PEVFLVDLQ--QGIQIFELRIYAAEM--GHRM 1055 (1109)
T ss_pred             cCCCCcceEEEEEEEeCCCCCHHHHHHH---HHHHHHhCccccCCCC-CEEEEEecC--CCceEEEEEEEEcCh--hhHH
Confidence            999875 79999999999 899999999   8899999999988775 799999998  789999999999743  5789


Q ss_pred             HHHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 009063          429 CVKEAILLDLLHVISHHRARMATPIRTVQKIYS  461 (545)
Q Consensus       429 ~ir~~i~~~i~~~l~~~gI~ia~P~~~l~~~~~  461 (545)
                      .++++++.+|++.|+++||++|||++++|+...
T Consensus      1056 ~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~~~ 1088 (1109)
T PRK10929       1056 PLRHEIHQLILAGFREHGIDMPFPPFQMRLESL 1088 (1109)
T ss_pred             HHHHHHHHHHHHHHHHCCCcCCCCCeEEEeecC
Confidence            999999999999999999999999999999863

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.3e-36  Score=332.34  Aligned_cols=244  Identities=20%  Similarity=0.221  Sum_probs=221.5

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 009063          199 TVLAFAYCLSSLIQQIQ-KFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTL  277 (545)
Q Consensus       199 ~i~~~~~~~~~li~~~~-~~~~~~~~~~~~~~r~~~i~~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi~glalgf  277 (545)
                      +++++++++.+.+.... ..+..+.+.+.+.     -..+.+++.+.+..++.++.++.+|+|.+++--.+|+.|+++||
T Consensus       566 l~~~~~~~l~r~~~~~L~~~vl~r~~~~~G~-----r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsvGiGF  640 (835)
T COG3264         566 LLFLITYVLTRNLPGWLEVRVLQRLDLDAGT-----RYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSVGLGF  640 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCcch-----HHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhhhhch
Confidence            44566677777776654 4667766644433     25588999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhcCCccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcccCC-c
Q 009063          278 AGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKT-H  356 (545)
Q Consensus       278 Aaqd~l~N~~aGi~I~~~rpf~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~sr~~-~  356 (545)
                      +.|++++||+||++|+++|||||||||++    |+.+|+|.+|+.|+ |.|+|+|++-++|||+.|.++.|.|||.++ .
T Consensus       641 GLQ~I~~NFVSGlIiL~ErpvkvGD~It~----g~~~G~V~~I~vRA-T~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~  715 (835)
T COG3264         641 GLQEIVSNFVSGLIILFERPVKVGDTVTI----GTVSGTVRKISVRA-TTIRTFDRKEVIVPNSAFITEQVINWSLRDTT  715 (835)
T ss_pred             hHHHHHHHhhhhhhhheecCcccCCEEEE----CCceEEEEEEEeeE-EEEEeCCCCeEEeccHHHHhhheeeeeccCce
Confidence            99999999999999999999999999999    78999999999999 999999999999999999999999999987 7


Q ss_pred             eEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHH
Q 009063          357 WRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAIL  435 (545)
Q Consensus       357 ~ri~~~l~V~y-td~~~i~~i~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~  435 (545)
                      .|+.+.++++| +|+++++++   +-+..++||.+.++|. |.|++.+|+  ++++++++++|+.....  ...++++++
T Consensus       716 ~R~~i~v~vay~sD~~~V~~~---Ll~~A~~~p~Vl~~P~-P~v~f~~fg--~s~L~fELr~~v~~~~~--~~~~~~~l~  787 (835)
T COG3264         716 TRLVIPVGVAYGSDPELVREL---LLEAAREHPRVLKDPA-PEVFFTAFG--ASSLDFELRVYVAELGD--RMPVRSELN  787 (835)
T ss_pred             EEEEEEecccCCCCHHHHHHH---HHHHHHhCCCccCCCC-CeeEeeccc--ccceeEEEEEEeecccc--ccchHHHHH
Confidence            89999999999 899999999   9999999999999886 799999999  88999999999998753  344999999


Q ss_pred             HHHHHHHHHCCCccCCCceEEEEec
Q 009063          436 LDLLHVISHHRARMATPIRTVQKIY  460 (545)
Q Consensus       436 ~~i~~~l~~~gI~ia~P~~~l~~~~  460 (545)
                      ..|.+.|+||||++|||++++++.+
T Consensus       788 ~~I~~~fre~gI~ipfpq~~v~l~~  812 (835)
T COG3264         788 RAILDRFRENGIEIPFPQREVRLKN  812 (835)
T ss_pred             HHHHHHHHHcCCCCCCchHheEecC
Confidence            9999999999999999999999987

>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation

Probab=100.00  E-value=9.9e-37  Score=296.34  Aligned_cols=203  Identities=24%  Similarity=0.419  Sum_probs=170.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccCCcEEEEeecCCCeEEEEE
Q 009063          239 KAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVE  318 (545)
Q Consensus       239 ~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi~glalgfAaqd~l~N~~aGi~I~~~rpf~VGD~I~i~i~g~~~~G~Ve  318 (545)
                      +++.+++++++++.++..+|.+.+++++++|++|+++|||+|++++|++||++|++++||++||||++    ++..|+|+
T Consensus         2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i----~~~~G~V~   77 (206)
T PF00924_consen    2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEI----GGVEGRVE   77 (206)
T ss_dssp             -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEES----SS-EEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEE----EEeehHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999998    78999999


Q ss_pred             EEcceeEEEEEeCCCcEEEEeCcccccCeEEEccc-CCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccc
Q 009063          319 HVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQ-KTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLH  396 (545)
Q Consensus       319 eIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~sr-~~~~ri~~~l~V~y-td~~~i~~i~~~l~e~l~~~p~i~~~~~~  396 (545)
                      +|+|++ |++|++||+.++|||+.+.+++|.|+|+ ++.++..+.+.++| +|.++++++.+++.+.++++|.+...+ .
T Consensus        78 ~I~l~~-t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~  155 (206)
T PF00924_consen   78 EIGLRS-TRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEP-E  155 (206)
T ss_dssp             EE-SSE-EEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS--
T ss_pred             hcCcce-eeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCC-C
Confidence            999999 9999999999999999999999999999 77899999999999 788999999999999999999888755 3


Q ss_pred             eEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCcc
Q 009063          397 RRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARM  449 (545)
Q Consensus       397 p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~~l~~~gI~i  449 (545)
                      |.+.+..++  ++++.++++||++..++.+++++|++++.++++.+++|||+|
T Consensus       156 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~gI~~  206 (206)
T PF00924_consen  156 PRVVVDEIG--DSSLEFRIRVYVKNQDPEKYWEIRSEIRKRILEILEEHGIEI  206 (206)
T ss_dssp             EEEEEEEE---SSSEEEEEEEEEEC---CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred             CeEEEcccc--CCceEEEEEEEEEeCchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence            688899988  789999999999997788999999999999999999999985

They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=4.1e-34  Score=294.32  Aligned_cols=208  Identities=23%  Similarity=0.392  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccCCcEEEEeecCC-CeE
Q 009063          236 FAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGY-EVS  314 (545)
Q Consensus       236 ~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi~glalgfAaqd~l~N~~aGi~I~~~rpf~VGD~I~i~i~g~-~~~  314 (545)
                      ++.++.++++++++++.++..+|++.+++++++|++|+++|||+|++++|+++|+++++++||++||||++    + +.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~i----~~~~~  161 (316)
T COG0668          86 FLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI----GSGVE  161 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEEE----CCCce
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999    7 699


Q ss_pred             EEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcccCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccc-
Q 009063          315 GTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQ-  392 (545)
Q Consensus       315 G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~ri~~~l~V~y-td~~~i~~i~~~l~e~l~~~p~i~~-  392 (545)
                      |+|++|++++ |++|++||+.+++|||.+.++.|+|+|++..+++.++++++| +|.++++++   +++.+++.+.... 
T Consensus       162 G~V~~i~~~~-T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i---~~~~~~~~~~~~~~  237 (316)
T COG0668         162 GTVEDIGLRS-TTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKI---LKEVLEELPEVLKI  237 (316)
T ss_pred             EEEEEEEEEE-EEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHH---HHHHHHhccccccc
Confidence            9999999999 999999999999999999999999999998889999999999 899999999   5666666555542 


Q ss_pred             cccceEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEEE
Q 009063          393 QRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQ  457 (545)
Q Consensus       393 ~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~~l~~~gI~ia~P~~~l~  457 (545)
                      ++ +|.+.+.+++  ++++++++++|+++.+   ++..+++++..+++.++++||++|+|++.+.
T Consensus       238 ~~-~~~v~~~~~~--~~~~~i~v~~~t~~~~---~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~  296 (316)
T COG0668         238 EP-EPVIGVSELG--DSGINIRVRFWTNPED---LWSVQRELNLRIKEALEEAGIEIPYPQQSVL  296 (316)
T ss_pred             CC-CcEEEEeecc--CCceEEEEEEEecchh---HHHHHHHHHHHHHHHHHHcCCCCCCCCeeEE
Confidence            44 3689999998  8899999999999854   8999999999999999999999999999998

>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]

Probab=99.82  E-value=5.2e-20  Score=204.32  Aligned_cols=222  Identities=16%  Similarity=0.190  Sum_probs=192.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHhcCCccCCcEEEEeecC
Q 009063          232 MGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSV-MIHATQPFVINEWIQTKIQG  310 (545)
Q Consensus       232 ~~i~~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi~glalgfAaqd~l~N~~aGi-~I~~~rpf~VGD~I~i~i~g  310 (545)
                      +.++-+.+++.+++.++++++.+-.+|++.+.+++..+..-+++.|.+.+++++++.++ +++..+||+|||+|.+    
T Consensus       478 taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~V----  553 (714)
T KOG4629|consen  478 TAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVV----  553 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEE----
Confidence            55888889999999999999999999999999999888888999999999999999985 5667799999999998    


Q ss_pred             CCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcccCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCC
Q 009063          311 YEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQ  389 (545)
Q Consensus       311 ~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~ri~~~l~V~y-td~~~i~~i~~~l~e~l~~~p~  389 (545)
                      +|+.-.|||+++.+ |....+||+.+++||+.+.+++|.|+.|++.+...+++.++. |+.+|++.+.+.+.++++++|+
T Consensus       554 Dg~~~vVeemnLls-TvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~  632 (714)
T KOG4629|consen  554 DGVNLVVEEMNLLS-TVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPD  632 (714)
T ss_pred             eceEEEEEEeccce-EEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCcc
Confidence            66999999999999 999999999999999999999999999999999999999999 8999999999999999999998


Q ss_pred             ccccccceEEEEEeeCCC-CCeEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEEEEec
Q 009063          390 VEQQRLHRRVFLENINPE-SQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIY  460 (545)
Q Consensus       390 i~~~~~~p~v~v~~~~~~-~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~~l~~~gI~ia~P~~~l~~~~  460 (545)
                      .....  +.+.+.++.+. +-.+.+.+..+.+.+|..+++..|.++...+.+.+++.||+.-++++++...+
T Consensus       633 ~~~p~--~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in~~~  702 (714)
T KOG4629|consen  633 DYYPD--LMVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDINLKN  702 (714)
T ss_pred             ccccc--hhhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchhhhc
Confidence            77322  35667666532 23445556666667788899999999999999999999999877776665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	545
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	5e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286

 Score = 83.6 bits (207), Expect = 5e-18
 Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 22/240 (9%)

Query: 200 VLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGF 259
           ++     ++ +I      L  +   D+T A     +F    V   +    +   +  +G 
Sbjct: 37  IIIVGLIIARMISNAVNRLMISRKIDATVA-----DFLSALVRYGIIAFTLIAALGRVGV 91

Query: 260 STQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEH 319
            T   +   G   +++ LA +   +N  + V++   +PF   E++   + G  V+GTV  
Sbjct: 92  QTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVD--LGG--VAGTVLS 147

Query: 320 VGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVA 378
           V  +S T +R  D + + IPN K     + N S++   R +  + +++  D+ +V  I  
Sbjct: 148 VQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI-- 204

Query: 379 DMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTS-----RFEEYLCVKEA 433
            +  ++    ++ + R    V L  +   S S+N +V  +  +       ++    +K  
Sbjct: 205 -LTNIIQSEDRILKDREM-TVRLNELG-AS-SINFVVRVWSNSGDLQNVYWDVLERIKRE 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 9e-09
 Identities = 76/487 (15%), Positives = 154/487 (31%), Gaps = 169/487 (34%)

Query: 117 LVAFAAWGLVPLVRLGRTIFLNRTDGSW---KRSRTHYILTSYLQPLLLWTGVTLICREL 173
           +            ++   IF       W   K   +   +   LQ L           ++
Sbjct: 166 VALDVCLSYKVQCKMDFKIF-------WLNLKNCNSPETVLEMLQKL---------LYQI 209

Query: 174 DP-LVLPSETSQGVKQRVLNFVRSLSTVLA---FAYCLSSLIQQIQKFLTEANDADSTDA 229
           DP     S+ S  +K R+ +    L  +L    +  CL  L+      L    +A + +A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LV------LLNVQNAKAWNA 261

Query: 230 RNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSS 289
               FN + K                                 +LLT   +++ T+FLS+
Sbjct: 262 ----FNLSCK---------------------------------ILLTTRFKQV-TDFLSA 283

Query: 290 ------VMIHATQPFVINE-------WIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAV 336
                  + H +     +E       ++  + Q               P       RE +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-------------LP-------REVL 323

Query: 337 HIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLH 396
               +   ++++    +        +    H++  K+ +I+     VL   P  E +++ 
Sbjct: 324 TT--NPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVL--EPA-EYRKMF 375

Query: 397 RR--VFLENINPESQSLNIL------------VSCFVKTS----RFEEYLCVKEAILLDL 438
            R  VF  + +  +  L+++            V+   K S    + +E      +I L+L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 439 L----HVISHHRARMATPIRTVQKIYSEP---DLENI--PFADT-IFTHSRAAANRPFLL 488
                +  + HR         V   Y+ P   D +++  P+ D   ++H           
Sbjct: 436 KVKLENEYALHR-------SIVDH-YNIPKTFDSDDLIPPYLDQYFYSH----------- 476

Query: 489 IEPSY---KISSDDKIKASTRAARN----EEKIRRLNQPQNL---ILRHIHRLDWYQLLT 538
           I   +    I   +++        +    E+KIR  +   N    IL  + +L +Y+   
Sbjct: 477 I--GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 539 TKRARQY 545
                +Y
Sbjct: 535 CDNDPKY 541

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	545
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	100.0
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	100.0
2e6z_A	59	Transcription elongation factor SPT5; KOW motif, s	82.87

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=100.00  E-value=9.1e-45  Score=369.60  Aligned_cols=243  Identities=18%  Similarity=0.250  Sum_probs=220.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Q 009063          199 TVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLA  278 (545)
Q Consensus       199 ~i~~~~~~~~~li~~~~~~~~~~~~~~~~~~r~~~i~~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi~glalgfA  278 (545)
                      ++++++|++.+++..+.+.+.++...     +.+..+++.++++++++++++++++..+|++++++++++|++|+++|||
T Consensus        36 ~i~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a  110 (286)
T 2vv5_A           36 AIIIVGLIIARMISNAVNRLMISRKI-----DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLA  110 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            45577788888887765544444331     2345688999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcccCCceE
Q 009063          279 GREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWR  358 (545)
Q Consensus       279 aqd~l~N~~aGi~I~~~rpf~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~r  358 (545)
                      +|++++|++||++|+++|||++||||++    +|.+|+|++|++++ |++|++||+.++|||+.+.++.|+|||+++.++
T Consensus       111 ~q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r  185 (286)
T 2vv5_A          111 LQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSREPVRR  185 (286)
T ss_dssp             HTHHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSSSSEEE
T ss_pred             HHHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCCCCcEE
Confidence            9999999999999999999999999998    67999999999999 999999999999999999999999999998889


Q ss_pred             EEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHH
Q 009063          359 IKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLD  437 (545)
Q Consensus       359 i~~~l~V~y-td~~~i~~i~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~  437 (545)
                      ++++++++| +|+++++++   ++++++++|.+..++. |.+.+.+++  ++++++++++|+++.   +++++|++++++
T Consensus       186 ~~~~v~v~y~~d~~~v~~~---l~~~~~~~~~vl~~p~-p~v~v~~~~--~~~i~~~v~~~~~~~---~~~~~~~~l~~~  256 (286)
T 2vv5_A          186 NEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDRE-MTVRLNELG--ASSINFVVRVWSNSG---DLQNVYWDVLER  256 (286)
T ss_dssp             EEEEEEECTTSCHHHHHHH---HHHHHHHCTTBCTTSC-EEEEEEEEC--SSSEEEEEEEEEETT---THHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCHHHHHHH---HHHHHHhCcccccCCC-CEEEEEEec--CCeEEEEEEEEEccc---hHHHHHHHHHHH
Confidence            999999999 899999998   8999999999887764 799999998  789999999999974   578999999999


Q ss_pred             HHHHHHHCCCccCCCceEEEEec
Q 009063          438 LLHVISHHRARMATPIRTVQKIY  460 (545)
Q Consensus       438 i~~~l~~~gI~ia~P~~~l~~~~  460 (545)
                      +++.|+++||++|||+++++...
T Consensus       257 i~~~~~~~gI~ip~P~~~v~~~~  279 (286)
T 2vv5_A          257 IKREFDAAGISFPYPQMDVNFKR  279 (286)
T ss_dssp             HHHHHHHHTCCCCCCEEEEEEEC
T ss_pred             HHHHHHHCCCcCCCCceEEEecc
Confidence            99999999999999999999876

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=100.00  E-value=1.2e-42  Score=353.89  Aligned_cols=216  Identities=17%  Similarity=0.268  Sum_probs=192.5

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccCCcEEEEeecC
Q 009063          231 NMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQG  310 (545)
Q Consensus       231 ~~~i~~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi~glalgfAaqd~l~N~~aGi~I~~~rpf~VGD~I~i~i~g  310 (545)
                      .++.+++++++++++++++++++|..+|++.++++|++|++|+++|||+|++++|++||++|+++|||++||||++    
T Consensus        62 ~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i----  137 (285)
T 3udc_A           62 DTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI----  137 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE----
Confidence            4667889999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             CCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcccCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHH-cCC
Q 009063          311 YEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLA-KNP  388 (545)
Q Consensus       311 ~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~ri~~~l~V~y-td~~~i~~i~~~l~e~l~-~~p  388 (545)
                      +|.+|+|++|++++ |++|++||+.++|||+.+  +.++|||++. .+..++++++| +|.++++++++++.+.+. .++
T Consensus       138 ~~~~G~V~~I~l~~-T~i~t~d~~~v~iPN~~l--~~i~N~s~~~-~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~  213 (285)
T 3udc_A          138 NGISGTVEEIGLRV-TKIRGFSDGLHIIPNGEI--KMVTNLTKDS-MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRD  213 (285)
T ss_dssp             TTEEEEEEEECSSE-EEEEETTTEEEEEEGGGC--SCEEECSSSC-EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEEEEeeeeE-EEEecCCCCEEEeccccc--ccccccCCCC-ceEEEEEeeecCCCHHHHHHHHHHHHHHHHhccc
Confidence            78999999999999 999999999999999999  4699999865 45568999999 899999988655544433 344


Q ss_pred             CccccccceEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 009063          389 QVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYS  461 (545)
Q Consensus       389 ~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~~l~~~gI~ia~P~~~l~~~~~  461 (545)
                      ...+++  |.+.+.+++  ++++++++++|+++.   +++++++++++++++.|+++||++|||+|++|+...
T Consensus       214 ~~~~~~--~~v~~~~~~--~s~i~~~v~~~~~~~---~~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~~  279 (285)
T 3udc_A          214 DLIEGP--TVLGITDMQ--DSKLVIMVYAKTQPM---QKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKRV  279 (285)
T ss_dssp             SBSSCC--EEEEEEEEE--TTEEEEEEEEEESTT---CHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEEC
T ss_pred             ccccCc--ccccccccC--CCEEEEEEEEEECcc---hHHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCcC
Confidence            433332  578899999  789999999999864   478899999999999999999999999999999874

>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.87  E-value=1.4  Score=33.23  Aligned_cols=46  Identities=15%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CCccCCcEEEEeecC--CCeEEEEEEEcceeEEEEEe---CCCcEEEEeCccc
Q 009063          296 QPFVINEWIQTKIQG--YEVSGTVEHVGWWSPTIIRG---DDREAVHIPNHKF  343 (545)
Q Consensus       296 rpf~VGD~I~i~i~g--~~~~G~VeeIgl~sTT~irt---~d~~~v~IPNs~l  343 (545)
                      -.|.+||.|+| ++|  .+..|.|+++.--. .++.-   .-.+.+.+|++++
T Consensus         6 ~~f~~GD~V~V-~~Gpf~g~~G~V~evd~e~-v~V~v~~fg~~tpvel~~~qv   56 (59)
T 2e6z_A            6 SGFQPGDNVEV-CEGELINLQGKILSVDGNK-ITIMPKHEDLKDMLEFPAQEL   56 (59)
T ss_dssp             SSCCTTSEEEE-CSSTTTTCEEEECCCBTTE-EEEEECCSSCCSCEEEETTTE
T ss_pred             ccCCCCCEEEE-eecCCCCCEEEEEEEeCCE-EEEEEEecCCCceEEEcHHHE
Confidence            36999999999 554  36899999998643 44443   1234566666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	545
d2vv5a1	67	b.38.1.3 (A:113-179) Mechanosensitive channel prot	2e-11

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 285 NFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFT 344
           N  + V++   +PF   E++        V+GTV  V  +S T +R  D + + IPN K  
Sbjct: 5   NLAAGVLLVMFRPFRAGEYVDLG----GVAGTVLSVQIFS-TTMRTADGKIIVIPNGKII 59

Query: 345 VNVVRNLS 352
              + N S
Sbjct: 60  AGNIINFS 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	545
d2vv5a1	67	Mechanosensitive channel protein MscS (YggB), midd	99.8
d2vv5a2	101	Mechanosensitive channel protein MscS (YggB), C-te	99.65
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	98.85
d1nz9a_	58	N-utilization substance G protein NusG, C-terminal	81.09

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.7e-20  Score=147.66  Aligned_cols=66  Identities=30%  Similarity=0.451  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhcCCccCCcEEEEeecCCCeEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcc
Q 009063          282 IFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLS  352 (545)
Q Consensus       282 ~l~N~~aGi~I~~~rpf~VGD~I~i~i~g~~~~G~VeeIgl~sTT~irt~d~~~v~IPNs~l~~~~I~N~s  352 (545)
                      +++|++||++|+++|||++||||++    ++.+|+|++|+|++ |+++++||+.++|||+++.+++|.|||
T Consensus         2 tlsN~~sGi~i~~~~pf~vGD~I~i----~~~~G~V~~I~l~~-T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           2 SLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             cHHHHHHHhhheeeCCccCCCEEEE----CCEEEEEEEEeceE-EEEEccCCCEEEEECHHHcCCccEECc
Confidence            7899999999999999999999998    67999999999999 999999999999999999999999997

>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain
family: Mechanosensitive channel protein MscS (YggB), C-terminal domain
domain: Mechanosensitive channel protein MscS (YggB), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.1e-15  Score=129.04  Aligned_cols=99  Identities=14%  Similarity=0.204  Sum_probs=91.4

Q ss_pred             cCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHH
Q 009063          353 QKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVK  431 (545)
Q Consensus       353 r~~~~ri~~~l~V~y-td~~~i~~i~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir  431 (545)
                      |++.+|+.+.++|+| +|+++++++   +.++++++|.+.+++. |.|.+.+++  ++++++++++|+++.+   +++++
T Consensus         1 R~~~RR~~~~i~v~y~~d~~~v~~i---l~~~~~~~~~v~~~p~-p~v~~~~~~--~s~i~~~v~~w~~~~~---~~~~~   71 (101)
T d2vv5a2           1 REPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDRE-MTVRLNELG--ASSINFVVRVWSNSGD---LQNVY   71 (101)
T ss_dssp             SSSEEEEEEEEEECTTSCHHHHHHH---HHHHHHHCTTBCTTSC-EEEEEEEEC--SSSEEEEEEEEEETTT---HHHHH
T ss_pred             CCCceEEEEEEEEccCCCHHHHHHH---HHHHHHhChhhhcccC-chhhcccCC--CceEEEEEEEEecchH---HHHHH
Confidence            567899999999999 899999999   8899999999998875 799999999  7899999999999854   68999


Q ss_pred             HHHHHHHHHHHHHCCCccCCCceEEEEec
Q 009063          432 EAILLDLLHVISHHRARMATPIRTVQKIY  460 (545)
Q Consensus       432 ~~i~~~i~~~l~~~gI~ia~P~~~l~~~~  460 (545)
                      ++++.+|++.|+++||+||||+|++++..
T Consensus        72 ~~l~~~I~~~l~~~gI~ip~P~~~v~~~~  100 (101)
T d2vv5a2          72 WDVLERIKREFDAAGISFPYPQMDVNFKR  100 (101)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCcCCCCcEEEEEec
Confidence            99999999999999999999999999864

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=6.2e-09  Score=84.50  Aligned_cols=77  Identities=12%  Similarity=0.131  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Q 009063          199 TVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLA  278 (545)
Q Consensus       199 ~i~~~~~~~~~li~~~~~~~~~~~~~~~~~~r~~~i~~l~~i~~~vv~vi~~i~~L~~lGv~~~~lla~~Gi~glalgfA  278 (545)
                      .++.++|.+.++++...+...++.+.     +++..+++.+++++.+|+++++++++.+|+|++++++++|++|+++|||
T Consensus        10 ~il~i~~~i~~~i~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGfa   84 (86)
T d2vv5a3          10 AIIIVGLIIARMISNAVNRLMISRKI-----DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLA   84 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            45567888888888776555555432     2345788999999999999999999999999999999999999999999


Q ss_pred             hh
Q 009063          279 GR  280 (545)
Q Consensus       279 aq  280 (545)
                      +|
T Consensus        85 ~Q   86 (86)
T d2vv5a3          85 LQ   86 (86)
T ss_dssp             HT
T ss_pred             cC
Confidence            98

>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.09  E-value=0.57  Score=33.59  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             CccCCcEEEEeecC--CCeEEEEEEEcc
Q 009063          297 PFVINEWIQTKIQG--YEVSGTVEHVGW  322 (545)
Q Consensus       297 pf~VGD~I~i~i~g--~~~~G~VeeIgl  322 (545)
                      .|++||+|+| ++|  .|..|+|+++.-
T Consensus         4 ~F~~Gd~V~I-~~GpF~g~~g~V~~i~~   30 (58)
T d1nz9a_           4 AFREGDQVRV-VSGPFADFTGTVTEINP   30 (58)
T ss_dssp             SCCTTCEEEE-CSGGGTTCEEEEEEEET
T ss_pred             cccCCCEEEE-eccCCCCCEEEEEEEcC
Confidence            6999999998 454  368999999843