Citrus Sinensis ID: 009069
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 544 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZPH9 | 633 | Probable methyltransferas | yes | no | 0.990 | 0.851 | 0.669 | 0.0 | |
| O80844 | 631 | Probable methyltransferas | no | no | 0.972 | 0.838 | 0.676 | 0.0 | |
| Q9SZX8 | 633 | Probable methyltransferas | no | no | 0.950 | 0.816 | 0.572 | 0.0 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.966 | 0.823 | 0.559 | 0.0 | |
| B9DFI7 | 616 | Probable methyltransferas | no | no | 0.931 | 0.823 | 0.534 | 1e-167 | |
| Q94EJ6 | 621 | Probable methyltransferas | no | no | 0.920 | 0.806 | 0.539 | 1e-162 | |
| Q9ZW75 | 611 | Probable methyltransferas | no | no | 0.812 | 0.723 | 0.516 | 1e-140 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.860 | 0.776 | 0.470 | 1e-128 | |
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.893 | 0.81 | 0.434 | 1e-123 | |
| Q93W95 | 600 | Probable methyltransferas | no | no | 0.777 | 0.705 | 0.439 | 1e-108 |
| >sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/547 (66%), Positives = 440/547 (80%), Gaps = 8/547 (1%)
Query: 1 MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS 60
M N ++LS ++ + K NLY + L+ ILC FY G+WQHS I ++ + LTS
Sbjct: 1 MGNYRWPSKLSKLSLRAKQTNLYRVILIAILCVTFYFVGVWQHSGRGISRSSISNHELTS 60
Query: 61 VPCSSTSAKASTNLNLDFSAHHQAPDPPPTL--ARVTYIPPCDPKYVENVPCEDTHRSLK 118
VPC+ T L+F++ H APD PPT+ ARV IP C ++ E PCE +RSL
Sbjct: 61 VPCTFPH---QTTPILNFASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLN 117
Query: 119 FDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQ 178
F R+RLIYRERHCPEK E+++CR+PAP+GY++PFRWPESR AW+ANVPH ELTVEKKNQ
Sbjct: 118 FPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQ 177
Query: 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS 238
NWVR++ DRF FPGGGTMFPRGADAYID+IG+LINLKDGSIRTAIDTGCGVAS+GAYLMS
Sbjct: 178 NWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMS 237
Query: 239 RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298
RNI+ +SFAPRDTHEAQVQFALERGVPA+IGV+ASIRLP+P+RAFD+AHCSRCLIPWGQY
Sbjct: 238 RNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQY 297
Query: 299 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358
+G YLIEVDRVLRPGGYWILSGPP+NW+ HWKGW RT +DL SEQ+ IE +ARSLCW+KL
Sbjct: 298 NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKL 357
Query: 359 IQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEV--SNIK 416
+Q++DLA+WQKPTNHVHC NR +P FC P+ WYTK+ETCLTPLPEV S IK
Sbjct: 358 VQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIK 417
Query: 417 EIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGR 476
E+AGGQL +WPERLNA+PPR+ G+++G+T + F +T W++RV+YYK D QLA+ GR
Sbjct: 418 EVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGR 477
Query: 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL 536
YRN LDMNA+LGGFA+ALVDDP+WVMN VPVEA +NTLGVIYERGLIGTYQNW +S
Sbjct: 478 YRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTY 537
Query: 537 -RSYSLI 542
R+Y I
Sbjct: 538 PRTYDFI 544
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/538 (67%), Positives = 425/538 (78%), Gaps = 9/538 (1%)
Query: 10 LSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAK 69
+ I+ +TK ANLY +TLV +LC YL G+WQ++ RAA S PC +
Sbjct: 4 FTRISSRTKKANLYYVTLVALLCIASYLLGIWQNTAVNPRAAFDDSD---GTPCEGFTRP 60
Query: 70 ASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRER 129
ST +LDF AHH DPPP P C E+ PCED RSLKF R+RL YR+R
Sbjct: 61 NSTK-DLDFDAHHNIQDPPPVTETAVSFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQR 119
Query: 130 HCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFS 189
HCPE+ E+LKCR+PAP+GY PFRWP SR AW+ANVPH ELTVEKKNQNWVR++ DRF
Sbjct: 120 HCPEREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFW 179
Query: 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPR 249
FPGGGTMFPRGADAYIDDIG+LI+L DGSIRTAIDTGCGVAS+GAYL+SRNI +SFAPR
Sbjct: 180 FPGGGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPR 239
Query: 250 DTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRV 309
DTHEAQVQFALERGVPA+IG+MA+IRLPYPSRAFD+AHCSRCLIPWGQ DG YL+EVDRV
Sbjct: 240 DTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLMEVDRV 299
Query: 310 LRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQK 369
LRPGGYWILSGPP+NW+ WKGW RT +DL +EQ IE +ARSLCWKK++Q+ DLAIWQK
Sbjct: 300 LRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQK 359
Query: 370 PTNHVHCIANRRVFKKPRFCK-AQDPDMAWYTKMETCLTPLPEV---SNIKEIAGGQLTK 425
P NH+ C R V K P FC+ QDPDMAWYTKM++CLTPLPEV ++K +AGG++ K
Sbjct: 360 PFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDLKTVAGGKVEK 419
Query: 426 WPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNA 485
WP RLNAIPPRVN+GA++ +T E F E+T LWK+RV+YYK +DYQL + GRYRNL+DMNA
Sbjct: 420 WPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETGRYRNLVDMNA 479
Query: 486 YLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
YLGGFAAAL DDP+WVMN VPVEAK+NTLGVIYERGLIGTYQNW +S R+Y I
Sbjct: 480 YLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFI 537
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/536 (57%), Positives = 390/536 (72%), Gaps = 19/536 (3%)
Query: 16 KTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTS-------- 67
+ + L I V+ LC +FY+ G WQ A T PSSI + + C + S
Sbjct: 13 EARRKKLTLILGVSGLCILFYVLGAWQ-------ANTVPSSI-SKLGCETQSNPSSSSSS 64
Query: 68 AKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYR 127
+ +S + LDF +H+Q + T + Y PC+ E PCED R +FDR+ + YR
Sbjct: 65 SSSSESAELDFKSHNQI-ELKETNQTIKYFEPCELSLSEYTPCEDRQRGRRFDRNMMKYR 123
Query: 128 ERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDR 187
ERHCP K ELL C +P P Y +PF+WP+SR +AWY N+PHKEL+VEK QNW++ +GDR
Sbjct: 124 ERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQVEGDR 183
Query: 188 FSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFA 247
F FPGGGTMFPRGADAYIDDI +LI L DG IRTAIDTGCGVAS+GAYL+ R+I+AVSFA
Sbjct: 184 FRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFA 243
Query: 248 PRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVD 307
PRDTHEAQVQFALERGVPA+IG+M S RLPYP+RAFD+AHCSRCLIPW + DGLYL+EVD
Sbjct: 244 PRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGLYLMEVD 303
Query: 308 RVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIW 367
RVLRPGGYWILSGPP+NW+ +W+GW RT EDLK EQ+ IE +A+SLCWKK+ +K DL+IW
Sbjct: 304 RVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVTEKGDLSIW 363
Query: 368 QKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWP 427
QKP NH+ C ++ K P C + + D AWY +ETC+TPLPE +N + AGG L WP
Sbjct: 364 QKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDSAGGALEDWP 423
Query: 428 ERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYL 487
+R A+PPR+ RG + + AE FRED +WK+R+ +YK + +L+ GR+RN++DMNA+L
Sbjct: 424 DRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSH-GRFRNIMDMNAFL 482
Query: 488 GGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
GGFAA+++ P WVMN VPV+A+ TLGVIYERGLIGTYQ+W S R+Y +I
Sbjct: 483 GGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRTYDMI 538
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/556 (55%), Positives = 386/556 (69%), Gaps = 30/556 (5%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
S+ + K L I V+ LC + Y+ G WQ + TS S + + C TS
Sbjct: 7 SHSLAEAKRKRLTWILCVSGLCILSYVLGSWQTN----TVPTSSSEAYSRMGCDETSTTT 62
Query: 71 STN----------------------LNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENV 108
+ LDF +HH+ + T V Y PCD E
Sbjct: 63 RAQTTQTQTNPSSDDTSSSLSSSEPVELDFESHHKL-ELKITNQTVKYFEPCDMSLSEYT 121
Query: 109 PCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPH 168
PCED R +FDR+ + YRERHCP K ELL C +P P Y +PF+WP+SR +AWY N+PH
Sbjct: 122 PCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPH 181
Query: 169 KELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCG 228
KEL++EK QNW++ +G+RF FPGGGTMFPRGADAYIDDI +LI L DG+IRTAIDTGCG
Sbjct: 182 KELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCG 241
Query: 229 VASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288
VAS+GAYL+ R+I+A+SFAPRDTHEAQVQFALERGVPA+IG+M S RLPYP+RAFD+AHC
Sbjct: 242 VASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHC 301
Query: 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIET 348
SRCLIPW Q DGLYL EVDRVLRPGGYWILSGPP+NW+ +WKGW R+ EDLK EQ+ IE
Sbjct: 302 SRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIED 361
Query: 349 IARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQD-PDMAWYTKMETCLT 407
ARSLCWKK+ +K DL+IWQKP NHV C +RV K P C D PD AWY +E+C+T
Sbjct: 362 AARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVT 421
Query: 408 PLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSV 467
PLPE ++ E AGG L WP R A+PPR+ G + + AE FRED +WK+R++YYK +
Sbjct: 422 PLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQI 481
Query: 468 DYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ 527
+L++ GR+RN++DMNAYLGGFAAA++ P WVMN VPV+A+ TLGVI+ERG IGTYQ
Sbjct: 482 MPELSR-GRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQ 540
Query: 528 NWYV-FISPLRSYSLI 542
+W F + R+Y LI
Sbjct: 541 DWCEGFSTYPRTYDLI 556
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 588 bits (1515), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/524 (53%), Positives = 360/524 (68%), Gaps = 17/524 (3%)
Query: 25 ITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNL--NLDFSAHH 82
I +V LC FY+ G WQ S G + S+ T++ A N+ +L+F HH
Sbjct: 18 IFIVFSLCCFFYILGAWQRS-GFGKG--------DSIALEMTNSGADCNIVPSLNFETHH 68
Query: 83 QAPDP---PPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLK 139
A+V PCD +Y + PC+D R++ F RD +IYRERHC + E L
Sbjct: 69 AGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHCAPENEKLH 128
Query: 140 CRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPR 199
C +PAP GY PF WP+SR + YAN P+K LTVEK QNW++++GD F FPGGGT FP+
Sbjct: 129 CLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFPGGGTQFPQ 188
Query: 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA 259
GAD YID + +I +++G++RTA+DTGCGVASWGAYL SRN+ A+SFAPRD+HEAQVQFA
Sbjct: 189 GADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEAQVQFA 248
Query: 260 LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319
LERGVPA+IGV+ +I+LPYP+RAFDMAHCSRCLIPWG DG+YL+EVDRVLRPGGYWILS
Sbjct: 249 LERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGANDGMYLMEVDRVLRPGGYWILS 308
Query: 320 GPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIAN 379
GPP+NW+ ++K W R EDL+ EQ IE A+ LCW+K + ++AIWQK N C +
Sbjct: 309 GPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHGEIAIWQKRVNDEAC-RS 367
Query: 380 RRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNR 439
R+ + FCK D D WY KME C+TP PE S+ E+AGG+L +P+RLNA+PPR++
Sbjct: 368 RQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVPPRISS 427
Query: 440 GAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPL 499
G++ GVT + + +D WKK V YK ++ L GRYRN++DMNA GGFAAAL L
Sbjct: 428 GSISGVTVDAYEDDNRQWKKHVKAYKRIN-SLLDTGRYRNIMDMNAGFGGFAAALESQKL 486
Query: 500 WVMNTVPVEAKINTLGVIYERGLIGTYQNW-YVFISPLRSYSLI 542
WVMN VP A+ N LGV+YERGLIG Y +W F + R+Y LI
Sbjct: 487 WVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDLI 530
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 572 bits (1475), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/526 (53%), Positives = 358/526 (68%), Gaps = 25/526 (4%)
Query: 24 SITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNLNLDFSAHHQ 83
S+ +V LC FYL G WQ S G + + I C+ +LDF HH
Sbjct: 18 SLLVVVGLCCFFYLLGAWQKS-GFGKGDSIAMEITKQAQCTDIVT------DLDFEPHHN 70
Query: 84 A------PDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTEL 137
DP P + PCD K + PC++ R++KF R+ +IYRERHCP E
Sbjct: 71 TVKIPHKADPKPVSFK-----PCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPDNEK 125
Query: 138 LKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMF 197
L+C VPAP GY PF WP+SR + YAN P K LTVEK QNWV+FQG+ F FPGGGTMF
Sbjct: 126 LRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGTMF 185
Query: 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQ 257
P+GADAYI+++ +I +KDGS+RTA+DTGCGVASWGAY++ RN+L +SFAPRD HEAQVQ
Sbjct: 186 PQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQVQ 245
Query: 258 FALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWI 317
FALERGVPA+I V+ SI LPYP+RAFDMA CSRCLIPW +G YL+EVDRVLRPGGYW+
Sbjct: 246 FALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVDRVLRPGGYWV 305
Query: 318 LSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCI 377
LSGPP+NW++ K WNRT +L +EQ IE IA SLCW+K +K D+AI++K N C
Sbjct: 306 LSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKINDRSCD 365
Query: 378 ANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRV 437
+ V CK +D D WY ++ETC+TP P+VSN +E+AGG+L K+PERL A+PP +
Sbjct: 366 RSTPV----DTCKRKDTDDVWYKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVPPSI 421
Query: 438 NRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD 497
++G ++GV E ++ED LWKKRVT YK ++ +L RYRN++DMNA LGGFAAAL
Sbjct: 422 SKGLINGVDEESYQEDINLWKKRVTGYKRIN-RLIGSTRYRNVMDMNAGLGGFAAALESP 480
Query: 498 PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
WVMN +P K NTL V+YERGLIG Y +W S R+Y I
Sbjct: 481 KSWVMNVIPTINK-NTLSVVYERGLIGIYHDWCEGFSTYPRTYDFI 525
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 232/449 (51%), Positives = 308/449 (68%), Gaps = 7/449 (1%)
Query: 96 YIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPE-KTELLKCRVPAPHGYTVPFRW 154
Y P C + +PC D + ++ +R RERHCP+ E +C VP P GY PF W
Sbjct: 90 YFPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTGYKTPFPW 149
Query: 155 PESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL 214
PESR++AW+ NVP K L KK QNWVR +GDRF FPGGGT FP G Y+D I ++ L
Sbjct: 150 PESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDVILSVLPL 209
Query: 215 KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASI 274
GSIRT +D GCGVAS+GA+L++ IL +S APRD HEAQVQFALERG+PA++GV+++
Sbjct: 210 ASGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTY 269
Query: 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNR 334
+LPYPSR+FDM HCSRCL+ W YDGLYL+EVDRVLRP GYW+LSGPPV +K R
Sbjct: 270 KLPYPSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKR 329
Query: 335 TTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDP 394
+++L+++ + + R LCW+K+ + + IW+KP+NH+ C + K P C + DP
Sbjct: 330 DSKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSDP 389
Query: 395 DMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDT 454
D AWY +ME C+TPLP+V++ + L WPERLN + PR+ G++ G T F+ DT
Sbjct: 390 DAAWYKEMEPCITPLPDVNDTNKTV---LKNWPERLNHV-PRMKTGSIQGTTIAGFKADT 445
Query: 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTL 514
LW++RV YY + ++ G+YRN++DMNA LGGFAAAL+ P+WVMN VP + K NTL
Sbjct: 446 NLWQRRVLYYDT-KFKFLSNGKYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTL 504
Query: 515 GVIYERGLIGTYQNWYVFISPL-RSYSLI 542
GV+Y+RGLIGTY NW +S R+Y LI
Sbjct: 505 GVVYDRGLIGTYMNWCEALSTYPRTYDLI 533
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/480 (47%), Positives = 312/480 (65%), Gaps = 12/480 (2%)
Query: 68 AKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYR 127
AK T A + P P + P C ++ + PC D R K+ RL +
Sbjct: 47 AKDVTRTTTKAVASPKEPTATPIQIKSVSFPECGSEFQDYTPCTDPKRWKKYGVHRLSFL 106
Query: 128 ERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDR 187
ERHCP E +C +P P GY P RWP+SR+ WY NVP+ + +K NQ+W++ +GD+
Sbjct: 107 ERHCPPVYEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKKEGDK 166
Query: 188 FSFPGGGTMFPRGADAYIDDIGKLI-NLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSF 246
F FPGGGTMFPRG Y+D + LI +KDG++RTAIDTGCGVASWG L+ R IL++S
Sbjct: 167 FHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLSL 226
Query: 247 APRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEV 306
APRD HEAQVQFALERG+PA++G++++ RLP+PS AFDMAHCSRCLIPW ++ G+YL+E+
Sbjct: 227 APRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIYLLEI 286
Query: 307 DRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAI 366
R++RPGG+W+LSGPPVN+ W+GWN T ED KS+ N ++++ S+C+KK QK D+A+
Sbjct: 287 HRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKDDIAV 346
Query: 367 WQKPTNH--VHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLT-PLPEVSNIKEIAGGQL 423
WQK ++ IA P+ + +PD AWYT + C+ P P+V K+ G +
Sbjct: 347 WQKLSDKSCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTPKV---KKSGLGSI 403
Query: 424 TKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDM 483
KWPERL+ P R+ G V G +A + D WK RV +YK V L + RN++DM
Sbjct: 404 PKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPALGT-DKIRNVMDM 460
Query: 484 NAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNW-YVFISPLRSYSLI 542
N GGF+AAL++DP+WVMN V + N+L V+++RGLIGTY +W F + R+Y L+
Sbjct: 461 NTVYGGFSAALIEDPIWVMNVVSSYSA-NSLPVVFDRGLIGTYHDWCEAFSTYPRTYDLL 519
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/523 (43%), Positives = 322/523 (61%), Gaps = 37/523 (7%)
Query: 26 TLVTILCTI-FYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNLNLDFSAHHQA 84
L+ +LC + FYL G++ + S + S++L++D S
Sbjct: 22 VLLILLCGLSFYLGGLYCGK--------------NIIEVSDVAKAESSSLDVDDSLQ--- 64
Query: 85 PDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPA 144
+ C Y + PC D + K+ RL + ERHCP + +C VP
Sbjct: 65 -------VKSVSFSECSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPP 117
Query: 145 PHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAY 204
P GY P RWP+S+ WY NVP+ + +K NQNW+R +G++F FPGGGTMFP G AY
Sbjct: 118 PDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHGVSAY 177
Query: 205 IDDIGKLI-NLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG 263
+D + LI +KDG+IRTAIDTGCGVASWG L+ R IL VS APRD HEAQVQFALERG
Sbjct: 178 VDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERG 237
Query: 264 VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPV 323
+PA++G++++ RLP+PS +FDMAHCSRCLIPW ++ G+YL+EV R+LRPGG+W+LSGPPV
Sbjct: 238 IPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVYLLEVHRILRPGGFWVLSGPPV 297
Query: 324 NWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHV--HCIANRR 381
N+E+ WKGW+ T E+ +S ++ + S+C+K +K D+A+WQK +++ + ++N
Sbjct: 298 NYENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKDDIAVWQKSPDNLCYNKLSNDP 357
Query: 382 VFKKPRFCKAQDPDMAWYTKMETC-LTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRG 440
P+ + +PD AWYT + C + P P+ +K+ KWPERL+ P R++
Sbjct: 358 DAYPPKCDDSLEPDSAWYTPLRPCVVVPSPK---LKKTDLESTPKWPERLHTTPERIS-- 412
Query: 441 AVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLW 500
V G +F+ D + WK R +YK + + + RN++DMN GG AAALV+DPLW
Sbjct: 413 DVPGGNGNVFKHDDSKWKTRAKHYKKLLPAIGS-DKIRNVMDMNTAYGGLAAALVNDPLW 471
Query: 501 VMNTVPVEAKINTLGVIYERGLIGTYQNW-YVFISPLRSYSLI 542
VMN V A NTL V+++RGLIGTY +W F + R+Y L+
Sbjct: 472 VMNVVSSYA-ANTLPVVFDRGLIGTYHDWCEAFSTYPRTYDLL 513
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/446 (43%), Positives = 282/446 (63%), Gaps = 23/446 (5%)
Query: 100 CDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQ 159
C + V ++PCED R+ + R+ YRERHCP E C +P P GY +P WPES
Sbjct: 84 CPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEETPLCLIPPPSGYKIPVPWPESLH 143
Query: 160 FAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSI 219
W+AN+P+ ++ K +Q W++ +G+ F+FPGGGTMFP GA YI+ + + I L G++
Sbjct: 144 KIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTL 203
Query: 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279
RTA+D GCGVAS+G L+S+ ILA+SFAPRD+H++Q+QFALERGVPA + ++ + RLP+P
Sbjct: 204 RTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFP 263
Query: 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDL 339
+ +FD+ HCSRCLIP+ Y+ Y IEVDR+LRPGGY ++SGPPV W K W
Sbjct: 264 AYSFDLMHCSRCLIPFTAYNATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEW------- 316
Query: 340 KSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWY 399
++ +AR+LC++ + + IW+KP C+ ++ F ++ P AWY
Sbjct: 317 ----ADLQAVARALCYELIAVDGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAWY 371
Query: 400 TKMETCLTPLPEVSNIK-EIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWK 458
K++ C+T S++K E A G ++KWPERL +P +R V ++F D W
Sbjct: 372 FKLKRCVT---RPSSVKGEHALGTISKWPERLTKVP---SRAIVMKNGLDVFEADARRWA 425
Query: 459 KRVTYYK-SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI 517
+RV YY+ S++ +L P RN++DMNA+ GGFAA L DP+WVMN +P + TL VI
Sbjct: 426 RRVAYYRDSLNLKLKSP-TVRNVMDMNAFFGGFAATLASDPVWVMNVIPARKPL-TLDVI 483
Query: 518 YERGLIGTYQNWYV-FISPLRSYSLI 542
Y+RGLIG Y +W F + R+Y I
Sbjct: 484 YDRGLIGVYHDWCEPFSTYPRTYDFI 509
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 544 | ||||||
| 224130124 | 629 | predicted protein [Populus trichocarpa] | 0.972 | 0.841 | 0.754 | 0.0 | |
| 255541466 | 627 | ATP binding protein, putative [Ricinus c | 0.965 | 0.837 | 0.748 | 0.0 | |
| 224063975 | 622 | predicted protein [Populus trichocarpa] | 0.972 | 0.850 | 0.733 | 0.0 | |
| 449480132 | 635 | PREDICTED: probable methyltransferase PM | 0.979 | 0.839 | 0.715 | 0.0 | |
| 357507093 | 638 | hypothetical protein MTR_7g076170 [Medic | 0.977 | 0.833 | 0.702 | 0.0 | |
| 449432189 | 640 | PREDICTED: probable methyltransferase PM | 0.979 | 0.832 | 0.706 | 0.0 | |
| 359489492 | 632 | PREDICTED: probable methyltransferase PM | 0.966 | 0.832 | 0.710 | 0.0 | |
| 353685478 | 634 | putative methyltransferase [Phaseolus vu | 0.955 | 0.820 | 0.712 | 0.0 | |
| 297814267 | 633 | dehydration-responsive family protein [A | 0.990 | 0.851 | 0.680 | 0.0 | |
| 356530107 | 622 | PREDICTED: probable methyltransferase PM | 0.933 | 0.816 | 0.702 | 0.0 |
| >gi|224130124|ref|XP_002320758.1| predicted protein [Populus trichocarpa] gi|222861531|gb|EEE99073.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/534 (75%), Positives = 456/534 (85%), Gaps = 5/534 (0%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
SY+ K K NLY I L I CTIFYL G +Q S G + + + SSI PC+
Sbjct: 7 SYLPLKAKKLNLYKIILTIIPCTIFYLVGFYQSSRGNVPVSNTSSSINEVFPCAPPDHNT 66
Query: 71 STNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERH 130
+T LDF AHH APDPP +AR ++PPCDPKY E+ PCED RSLKFDRDRL+YRERH
Sbjct: 67 TT---LDFEAHHFAPDPPLRVARAHHLPPCDPKYSEHTPCEDVERSLKFDRDRLVYRERH 123
Query: 131 CPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSF 190
CPE E+LKCRVPAP+GY VPFRWPESR+FAWYANVPHKELTVEKKNQNWV +G R F
Sbjct: 124 CPESHEILKCRVPAPYGYKVPFRWPESREFAWYANVPHKELTVEKKNQNWVHVEGKRLRF 183
Query: 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRD 250
PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYL+SRNILAVSFAPRD
Sbjct: 184 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRNILAVSFAPRD 243
Query: 251 THEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRV 309
TH +QVQFALERGVPALIG++ASIRLPYPSR+FDMAHCSRCLIPWGQY DG YLIEVDR+
Sbjct: 244 THVSQVQFALERGVPALIGIIASIRLPYPSRSFDMAHCSRCLIPWGQYADGQYLIEVDRI 303
Query: 310 LRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQK 369
LRPGGYWILSGPP+NWE+HW+GWNRT EDL +EQ+ IE +ARSLCWKKL+Q+KD+AIWQK
Sbjct: 304 LRPGGYWILSGPPINWEAHWEGWNRTREDLGAEQSQIEKVARSLCWKKLVQRKDIAIWQK 363
Query: 370 PTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPER 429
PTNH+HC NR+VFK+P FCK+Q+PDMAWYTKMETCLTPLPEVSNI++IAGGQL KWPER
Sbjct: 364 PTNHIHCKVNRKVFKRPLFCKSQNPDMAWYTKMETCLTPLPEVSNIRDIAGGQLAKWPER 423
Query: 430 LNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG 489
LNAIPPR++RG+++G+TA F E++ LWK+RV YYK +DYQLAQ GRYRNLLDMNA+LGG
Sbjct: 424 LNAIPPRISRGSLEGITAGNFIENSELWKRRVAYYKKIDYQLAQTGRYRNLLDMNAHLGG 483
Query: 490 FAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
FAAALVDDPLWVMN VPV+AK NTLGVI+ERGLIGTYQNW +S R+Y I
Sbjct: 484 FAAALVDDPLWVMNVVPVQAKTNTLGVIFERGLIGTYQNWCEAMSTYPRTYDFI 537
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541466|ref|XP_002511797.1| ATP binding protein, putative [Ricinus communis] gi|223548977|gb|EEF50466.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/533 (74%), Positives = 451/533 (84%), Gaps = 8/533 (1%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
S++ F+TK ANLY IT+ TILCT+FY G +Q+S G + +TS SSI P
Sbjct: 6 SFLAFRTKKANLYKITVTTILCTVFYFIGFYQNSRGRVPLSTSRSSIFDCAP-------Q 58
Query: 71 STNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERH 130
N LDF HHQ PDPP ARV ++PPCDP+ E PCED RSL+FDRDRL+YRERH
Sbjct: 59 VLNTTLDFDPHHQLPDPPLKAARVLHLPPCDPELSEYTPCEDRQRSLQFDRDRLVYRERH 118
Query: 131 CPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSF 190
CPEK ELLKCRVPAP GY VPFRWP SR++ W+ANVPHKELTVEKKNQNWVRF+GDRF F
Sbjct: 119 CPEKKELLKCRVPAPFGYRVPFRWPVSREYGWFANVPHKELTVEKKNQNWVRFEGDRFRF 178
Query: 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRD 250
PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVAS+GAYL+SRNIL +SFAPRD
Sbjct: 179 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASFGAYLLSRNILTMSFAPRD 238
Query: 251 THEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVL 310
THEAQVQFALERGVPALIGV AS+R PYPSRAFDMAHCSRCLIPW YDG YLIEVDR+L
Sbjct: 239 THEAQVQFALERGVPALIGVFASMRQPYPSRAFDMAHCSRCLIPWATYDGQYLIEVDRML 298
Query: 311 RPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKP 370
RPGGYW+LSGPP+NWE+HWKGW+RT EDL EQ IET+A+SLCWKKL+QK DLAIWQKP
Sbjct: 299 RPGGYWVLSGPPINWENHWKGWSRTPEDLNEEQTSIETVAKSLCWKKLVQKDDLAIWQKP 358
Query: 371 TNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERL 430
TNH+HC ANR+VFK+P FC++QDPD AWYTK+ETCLTPLPEVSNI++IAGGQL WPERL
Sbjct: 359 TNHIHCKANRKVFKQPLFCESQDPDRAWYTKLETCLTPLPEVSNIRDIAGGQLANWPERL 418
Query: 431 NAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGF 490
AIPPR++ G+++G+TAE F E+T LWKKRV +YK+VD+QLA+ GRYRN+LDMNAYLGGF
Sbjct: 419 TAIPPRISSGSLNGITAETFTENTELWKKRVDHYKAVDHQLAEQGRYRNILDMNAYLGGF 478
Query: 491 AAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
AAALVDDP WVMN VPVE INTLGVIYERGLIGTYQNW +S R+Y LI
Sbjct: 479 AAALVDDPAWVMNVVPVETDINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLI 531
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063975|ref|XP_002301329.1| predicted protein [Populus trichocarpa] gi|222843055|gb|EEE80602.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/533 (73%), Positives = 458/533 (85%), Gaps = 4/533 (0%)
Query: 11 SYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKA 70
SY+TFK K NLY IT+ ILCT+FYLAG +Q+S G I T+ SS +T+ C+ T+
Sbjct: 7 SYLTFKAKKLNLYKITITIILCTVFYLAGFYQNSRGTISINTTSSSSITAFRCAPTNHST 66
Query: 71 STNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERH 130
+T LDF+A H A DP P +AR + PPCDPKY E PCED RSL+FDRDRL+YRERH
Sbjct: 67 TT---LDFAARHFAQDPKPPVAREHHFPPCDPKYSEYTPCEDVDRSLRFDRDRLVYRERH 123
Query: 131 CPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSF 190
CPE E+LKCRVP P+GY +PF WPESR+ AWYANVPHK+LTVEKKNQNWVR +G+R F
Sbjct: 124 CPESHEILKCRVPPPYGYKMPFSWPESRELAWYANVPHKDLTVEKKNQNWVRVEGERLRF 183
Query: 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRD 250
PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYL+SRNIL VSFAPRD
Sbjct: 184 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRNILTVSFAPRD 243
Query: 251 THEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVL 310
TH +QVQFALERGVPALIG++ASIRLPYPSR+FDMAHCSRCL+PWGQYDG YLIE+DR+L
Sbjct: 244 THVSQVQFALERGVPALIGIIASIRLPYPSRSFDMAHCSRCLVPWGQYDGQYLIEIDRIL 303
Query: 311 RPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKP 370
RPGGYWILSGPP+NWE+HWKGWNRT EDL++EQ+ IE +A+SLCW+KL+Q+ D+AIWQKP
Sbjct: 304 RPGGYWILSGPPINWETHWKGWNRTREDLRAEQSQIERVAKSLCWRKLVQRNDIAIWQKP 363
Query: 371 TNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERL 430
TNHVHC NR+VFK+P FCK+Q+PDMAWYTKMETCLTPLPEV++I++IAGGQL KWPERL
Sbjct: 364 TNHVHCKVNRKVFKRPLFCKSQNPDMAWYTKMETCLTPLPEVASIRDIAGGQLAKWPERL 423
Query: 431 NAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGF 490
NAIPPR++ G ++G+ A F E++ LWKKRV YYK +DYQLA+ GRYRNLLDMNA+LGGF
Sbjct: 424 NAIPPRISSGGLEGLAANSFVENSELWKKRVAYYKKIDYQLAKTGRYRNLLDMNAHLGGF 483
Query: 491 AAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
AAALVDDP+WVMN VPV+AK+NTLGVI++RGLIGTYQNW +S R+Y I
Sbjct: 484 AAALVDDPVWVMNVVPVQAKMNTLGVIFQRGLIGTYQNWCEAMSTYPRTYDFI 536
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480132|ref|XP_004155808.1| PREDICTED: probable methyltransferase PMT15-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/537 (71%), Positives = 446/537 (83%), Gaps = 4/537 (0%)
Query: 10 LSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGA--IRAATSPSSILTSVPCSSTS 67
++ +FK NLY+ITLV ILC +FYL G+WQ S G I A + + ++V + +
Sbjct: 3 VNNFSFKPGRLNLYTITLVAILCAVFYLVGVWQQSIGKSLIFAGGNYACTASTVAATIEN 62
Query: 68 AKASTNLNLDFSAHHQAPDPPPTL-ARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIY 126
+ A+T ++LDF+AHH A D P AR PPCD K E PCED RSLKFDRDRLIY
Sbjct: 63 STATTVIDLDFAAHHTAADLPVVQKARRPNFPPCDSKLYEYTPCEDRERSLKFDRDRLIY 122
Query: 127 RERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGD 186
RERHCPE E+LKCRVPAP GY VPFRWPESR FAW++NVPHKELTVEKKNQNWVRF+ D
Sbjct: 123 RERHCPEAGEILKCRVPAPAGYKVPFRWPESRDFAWFSNVPHKELTVEKKNQNWVRFEND 182
Query: 187 RFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSF 246
RF FPGGGTMFPRGADAYIDDIGKLINL DGSIRTA+DTGCGVASWGAYL+SRNI+ +SF
Sbjct: 183 RFRFPGGGTMFPRGADAYIDDIGKLINLADGSIRTAVDTGCGVASWGAYLLSRNIVTMSF 242
Query: 247 APRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEV 306
APRDTHEAQVQFALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPW Q DG+YLIEV
Sbjct: 243 APRDTHEAQVQFALERGVPALIGVLASIRLPYPSRAFDMAHCSRCLIPWAQSDGMYLIEV 302
Query: 307 DRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAI 366
DR+LRPGGYW+LSGPP+NWE+HWKGWNRTT DL++EQ+ IE +A+SLCWKKL QK D+AI
Sbjct: 303 DRILRPGGYWVLSGPPINWENHWKGWNRTTGDLQAEQSKIEAVAKSLCWKKLKQKDDIAI 362
Query: 367 WQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKW 426
WQKPTNH+HC NR+VFK P FC+ QDPD+AWYTKME CLTPLPEVS++KE AGGQL W
Sbjct: 363 WQKPTNHIHCKKNRKVFKFPNFCQEQDPDIAWYTKMEPCLTPLPEVSDVKETAGGQLLNW 422
Query: 427 PERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAY 486
PERL ++PPR++ G++ +T + F E+T LW+KRV +YK++D QLA+PGRYRNLLDMN++
Sbjct: 423 PERLTSVPPRISSGSLKQITPQNFTENTELWRKRVAHYKALDGQLAEPGRYRNLLDMNSF 482
Query: 487 LGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
LGGFAAA+VDDPLWVMN VPVEA NTLGVIYERGLIGTYQNW +S R+Y I
Sbjct: 483 LGGFAAAIVDDPLWVMNIVPVEADFNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFI 539
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507093|ref|XP_003623835.1| hypothetical protein MTR_7g076170 [Medicago truncatula] gi|124360854|gb|ABN08826.1| Generic methyltransferase [Medicago truncatula] gi|355498850|gb|AES80053.1| hypothetical protein MTR_7g076170 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/544 (70%), Positives = 447/544 (82%), Gaps = 12/544 (2%)
Query: 11 SYITFKTKHAN-----LYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSS------ILT 59
S+++ K N +Y +T LCT FY G+WQ+SP AA S ++ I
Sbjct: 4 SFLSIFNKKPNKPFSRIYFLTFTIFLCTFFYFLGLWQNSPTTTSAAISGNNHHSTTIIRP 63
Query: 60 SVPCSSTSAKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKF 119
P ++ ++ +++ LDFSAHH PDPP T RVT+ P CD E PCEDT RSLKF
Sbjct: 64 DCPPANFTSTTTSSTTLDFSAHHNVPDPPETSERVTHAPVCDVALSEYTPCEDTQRSLKF 123
Query: 120 DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQN 179
R+ LIYRERHCPEK E+L+CR+PAP+GY VP RWPESR +AWYANVPHKELT+EKKNQN
Sbjct: 124 PRENLIYRERHCPEKEEVLRCRIPAPYGYRVPPRWPESRDWAWYANVPHKELTIEKKNQN 183
Query: 180 WVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR 239
WV F+GDRF FPGGGTMFPRGA AYIDDIGKLINLKDGS+RTA+DTGCGVASWGAYL+ R
Sbjct: 184 WVHFEGDRFRFPGGGTMFPRGAGAYIDDIGKLINLKDGSVRTALDTGCGVASWGAYLLPR 243
Query: 240 NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299
+ILAVSFAPRDTHEAQVQFALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPWGQ D
Sbjct: 244 DILAVSFAPRDTHEAQVQFALERGVPALIGVIASIRLPYPSRAFDMAHCSRCLIPWGQND 303
Query: 300 GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359
G+YL EVDRVLRPGGYWILSGPP+NWESHWKGW RT EDL +EQ IE +A+SLCWKKL+
Sbjct: 304 GIYLTEVDRVLRPGGYWILSGPPINWESHWKGWERTREDLNAEQTSIERVAKSLCWKKLV 363
Query: 360 QKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIA 419
QK D+AIWQKPTNH+HC R+VFK FC A+DPD AWYTKM+TCLTPLPEV++IKE++
Sbjct: 364 QKGDIAIWQKPTNHIHCKITRKVFKNRPFCDAKDPDSAWYTKMDTCLTPLPEVTDIKEVS 423
Query: 420 GGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRN 479
G L+ WPERL ++PPR++ G++DG+TAEMF+E+T LWKKRV YYK++DYQLA+PGRYRN
Sbjct: 424 GRGLSNWPERLTSVPPRISSGSLDGITAEMFKENTELWKKRVAYYKTLDYQLAEPGRYRN 483
Query: 480 LLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RS 538
LLDMNAYLGGFAAA++DDP+WVMN VPVEA+INTLGV+YERGLIGTYQNW +S R+
Sbjct: 484 LLDMNAYLGGFAAAMIDDPVWVMNVVPVEAEINTLGVVYERGLIGTYQNWCEAMSTYPRT 543
Query: 539 YSLI 542
Y I
Sbjct: 544 YDFI 547
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432189|ref|XP_004133882.1| PREDICTED: probable methyltransferase PMT15-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/542 (70%), Positives = 445/542 (82%), Gaps = 9/542 (1%)
Query: 10 LSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGA--IRAATSPSSILTSVPCSSTS 67
++ +FK NLY+ITLV ILC +FYL G+WQ S G I A + + ++V + +
Sbjct: 3 VNNFSFKPGRLNLYTITLVAILCAVFYLVGVWQQSIGKSLIFAGGNYACTASTVAATIEN 62
Query: 68 AKASTNLNLDFSAHHQAPDPPPTL-ARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIY 126
+ A+T ++LDF+AHH A D P AR PPCD K E PCED RSLKFDRDRLIY
Sbjct: 63 STATTVIDLDFAAHHTAADLPVVQKARRPNFPPCDSKLYEYTPCEDRERSLKFDRDRLIY 122
Query: 127 RERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGD 186
RERHCPE E+LKCRVPAP GY VPFRWPESR FAW++NVPHKELTVEKKNQNWVRF+ D
Sbjct: 123 RERHCPEAGEILKCRVPAPAGYKVPFRWPESRDFAWFSNVPHKELTVEKKNQNWVRFEND 182
Query: 187 RFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCG-----VASWGAYLMSRNI 241
RF FPGGGTMFPRGADAYIDDIGKLINL DGSIRTA+DTG G VASWGAYL+SRNI
Sbjct: 183 RFRFPGGGTMFPRGADAYIDDIGKLINLADGSIRTAVDTGWGGRNGYVASWGAYLLSRNI 242
Query: 242 LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGL 301
+ +SFAPRDTHEAQVQFALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPW Q DG+
Sbjct: 243 VTMSFAPRDTHEAQVQFALERGVPALIGVLASIRLPYPSRAFDMAHCSRCLIPWAQSDGM 302
Query: 302 YLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361
YLIEVDR+LRPGGYW+LSGPP+NWE+HWKGWNRTT DL++EQ+ IE +A+SLCWKKL QK
Sbjct: 303 YLIEVDRILRPGGYWVLSGPPINWENHWKGWNRTTGDLQAEQSKIEAVAKSLCWKKLKQK 362
Query: 362 KDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGG 421
D+AIWQKPTNH+HC NR+VFK P FC+ QDPD+AWYTKME CLTPLPEVS++KE AGG
Sbjct: 363 DDIAIWQKPTNHIHCKKNRKVFKFPNFCQEQDPDIAWYTKMEPCLTPLPEVSDVKETAGG 422
Query: 422 QLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLL 481
QL WPERL ++PPR++ G++ +T + F E+T LW+KRV +YK++D QLA+PGRYRNLL
Sbjct: 423 QLLNWPERLTSVPPRISSGSLKQITPQNFTENTELWRKRVAHYKALDGQLAEPGRYRNLL 482
Query: 482 DMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYS 540
DMN++LGGFAAA+VDDPLWVMN VPVEA NTLGVIYERGLIGTYQNW +S R+Y
Sbjct: 483 DMNSFLGGFAAAIVDDPLWVMNIVPVEADFNTLGVIYERGLIGTYQNWCEAMSTYPRTYD 542
Query: 541 LI 542
I
Sbjct: 543 FI 544
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489492|ref|XP_002269747.2| PREDICTED: probable methyltransferase PMT15-like [Vitis vinifera] gi|296089068|emb|CBI38771.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/536 (71%), Positives = 434/536 (80%), Gaps = 10/536 (1%)
Query: 12 YITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAI-RAATSPSSILTSVPCSSTSAKA 70
Y+ K K NLY + LC+IFY+AG+WQH+ G + A S + L ++ S A
Sbjct: 9 YLASKAKRPNLYYLATSVTLCSIFYIAGIWQHTRGGVANLAESECTQLQNI-----SGVA 63
Query: 71 STNLNLDFSAHHQA---PDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYR 127
+ LDF HH A P P + ARV + P C E PCED RSLKFDR L+YR
Sbjct: 64 PKSHTLDFDTHHSAIDLPIAPTSPARVNHFPACPTYLSEYTPCEDAQRSLKFDRVMLVYR 123
Query: 128 ERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDR 187
ERHCPE E+LKCRVPAP+GYT PFRWPESR W+ANVPHKELTVEK QNWVRF+G R
Sbjct: 124 ERHCPEPNEVLKCRVPAPNGYTTPFRWPESRDSVWFANVPHKELTVEKAVQNWVRFEGKR 183
Query: 188 FSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFA 247
F FPGGGTMFPRGADAYID+IGKLINLKDGSIRTAIDTGCGVASWGAYL+SRNIL VSFA
Sbjct: 184 FRFPGGGTMFPRGADAYIDEIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRNILTVSFA 243
Query: 248 PRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVD 307
PRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY GLYLIE+D
Sbjct: 244 PRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYGGLYLIEID 303
Query: 308 RVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIW 367
R+LRPGGYWILSGPPVNW+ HWKGWNRT EDL +EQ+GIE +A+SLCWKKL++K DLA+W
Sbjct: 304 RILRPGGYWILSGPPVNWKKHWKGWNRTAEDLNNEQSGIEAVAKSLCWKKLVEKDDLAVW 363
Query: 368 QKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWP 427
QKPTNH HC NR+V+KKP FC+ +DPD AWYTK+E CLTPLPEV ++K+IAGG L KWP
Sbjct: 364 QKPTNHAHCQINRKVYKKPPFCEGKDPDQAWYTKLENCLTPLPEVGHVKDIAGGMLKKWP 423
Query: 428 ERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYL 487
ERL ++PPR+ RG+V G+TA++FREDT WKKRVTYYK D LA PGR+RN+LDMNAYL
Sbjct: 424 ERLTSVPPRIMRGSVKGITAKIFREDTDKWKKRVTYYKGFDGNLAVPGRFRNILDMNAYL 483
Query: 488 GGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
GGFAAAL++DPLWVMN VPVEA+INTLG+IYERGLIGTYQNW +S R+Y I
Sbjct: 484 GGFAAALINDPLWVMNMVPVEAEINTLGIIYERGLIGTYQNWCEAMSTYPRTYDFI 539
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|353685478|gb|AER13155.1| putative methyltransferase [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/525 (71%), Positives = 434/525 (82%), Gaps = 5/525 (0%)
Query: 22 LYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCS---STSAKASTNLNLDF 78
LY +T T LCT+FYL G+W HSP ++ A ++ + + C S +N LDF
Sbjct: 23 LYLLTFTTFLCTLFYLLGLWHHSPPSLAAISAATHLAGRRNCPDPISNFLSTISNSTLDF 82
Query: 79 SAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELL 138
S+ H +PDP R + PPCD E PCED +RSLKF R+ LIYRERHCP + E L
Sbjct: 83 SSTHFSPDPEEG-TRAFHAPPCDATLAEYTPCEDVNRSLKFPREDLIYRERHCPVEAEAL 141
Query: 139 KCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFP 198
+CR+PAP GY VP RWPESR AW+ANVPHKELTVEKKNQNWVRF+GDRF FPGGGTMFP
Sbjct: 142 RCRIPAPFGYRVPLRWPESRDAAWFANVPHKELTVEKKNQNWVRFEGDRFRFPGGGTMFP 201
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF 258
RGA AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYL+SR+ILAVSFAPRDTHEAQVQF
Sbjct: 202 RGASAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRDILAVSFAPRDTHEAQVQF 261
Query: 259 ALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWIL 318
ALERGVPALIGV+ASIRLPYPSRAFDMAHCSRCLIPWGQ +G+YL EVDRVLRPGGYWIL
Sbjct: 262 ALERGVPALIGVLASIRLPYPSRAFDMAHCSRCLIPWGQNEGIYLTEVDRVLRPGGYWIL 321
Query: 319 SGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIA 378
SGPP+NWESHWKGW RT E LK EQ+ IE +A+SLCWKKL+QK DLAIWQKPTNH+HC
Sbjct: 322 SGPPINWESHWKGWERTRESLKEEQDTIEKVAKSLCWKKLVQKGDLAIWQKPTNHIHCKI 381
Query: 379 NRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVN 438
RRVFK FC A+DPD AWYTKMETCLTPLPEV+++ E++GG+L+ WPERL ++PPR++
Sbjct: 382 TRRVFKNRPFCAAKDPDTAWYTKMETCLTPLPEVNDVSEVSGGELSNWPERLTSVPPRIS 441
Query: 439 RGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDP 498
G+++G+T +MF+E++ LWKKRV YYK++DYQLA+ GRYRNLLDMNAYLGGFAAAL+DDP
Sbjct: 442 SGSLNGITVDMFKENSELWKKRVAYYKTLDYQLAERGRYRNLLDMNAYLGGFAAALIDDP 501
Query: 499 LWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
+WVMNTVPVEA++NTLG IYERGLIGTYQNW +S R+Y I
Sbjct: 502 VWVMNTVPVEAELNTLGAIYERGLIGTYQNWCEAMSTYPRTYDFI 546
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814267|ref|XP_002875017.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297320854|gb|EFH51276.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/547 (68%), Positives = 443/547 (80%), Gaps = 8/547 (1%)
Query: 1 MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS 60
MAN ++LS ++ + KH NLY + L+ ILC Y G+WQHS G I ++ + LTS
Sbjct: 1 MANYRWPSKLSKLSLRAKHTNLYRVILIAILCAASYFVGVWQHSGGGISRSSLSNHELTS 60
Query: 61 VPCSSTSAKASTNLNLDFSAHHQAPDPPPTL--ARVTYIPPCDPKYVENVPCEDTHRSLK 118
VPC+ T L+F+A H APDPPPT ARV IP C ++ E PCE +RSL
Sbjct: 61 VPCTFPH---QTTPILNFAASHTAPDPPPTATAARVAQIPSCGVEFSEYTPCEFVNRSLN 117
Query: 119 FDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQ 178
F R+RLIYRERHCP+K E+L+CR+PAP+GYTV FRWPESR AW+ANVPH ELTVEKKNQ
Sbjct: 118 FPRERLIYRERHCPKKHEILRCRIPAPYGYTVSFRWPESRDVAWFANVPHTELTVEKKNQ 177
Query: 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS 238
NWVR++ DRF FPGGGTMFPRGADAYID+IG+LINL+DGSIRTAIDTGCGVAS+GAYLMS
Sbjct: 178 NWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLRDGSIRTAIDTGCGVASFGAYLMS 237
Query: 239 RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298
RNI+ +SFAPRDTHEAQVQFALERGVPA+IGV+ASIRLP+P+RAFD+AHCSRCLIPWGQY
Sbjct: 238 RNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQY 297
Query: 299 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358
+G YLIEVDRVLRPGGYWILSGPP+NW+ HWKGW RT +DL SEQ+ IE +ARSLCWKKL
Sbjct: 298 NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWKKL 357
Query: 359 IQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEV--SNIK 416
+Q++DLA+WQKPTNH+HC NR ++P FC PD AWYTK+ETCLTPLPEV S IK
Sbjct: 358 VQREDLAVWQKPTNHIHCKRNRIALRRPPFCHQTLPDQAWYTKLETCLTPLPEVTGSEIK 417
Query: 417 EIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGR 476
E+AGGQL +WPERLNA+PPR+ G+++G+T + +T W++RV+YYK D QLA+ GR
Sbjct: 418 EVAGGQLARWPERLNAVPPRIKSGSLEGITEDDLVSNTETWQRRVSYYKKYDQQLAETGR 477
Query: 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL 536
YRNLLDMNA+LGGFA+ALVDDP+WVMN VPVEA +NTLGVIYERGLIGTYQNW +S
Sbjct: 478 YRNLLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCESMSTY 537
Query: 537 -RSYSLI 542
R+Y I
Sbjct: 538 PRTYDFI 544
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530107|ref|XP_003533625.1| PREDICTED: probable methyltransferase PMT15-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/525 (70%), Positives = 434/525 (82%), Gaps = 17/525 (3%)
Query: 22 LYSITLVTILCTIFYLAGMWQHSPGAI---RAATSPSSILTSVPCSSTSAKASTNLNLDF 78
LY ++ T LCTI YL G+W H+P ++ + T+ S+ S+P L+F
Sbjct: 18 LYLLSFTTFLCTITYLLGLWHHAPPSLPSLVSTTAHSNCPNSIP------------TLNF 65
Query: 79 SAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELL 138
SA H +PDP AR Y PPCDP E PCED RSLKF R+ LIYRERHCP ELL
Sbjct: 66 SATHFSPDPQAP-ARDFYAPPCDPSLSEYTPCEDVQRSLKFPRENLIYRERHCPPAEELL 124
Query: 139 KCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFP 198
+CRVPAP GY VP RWPESR AW+ANVPHKELTVEKKNQNWVRF+GD+F FPGGGTMFP
Sbjct: 125 RCRVPAPFGYRVPLRWPESRDAAWFANVPHKELTVEKKNQNWVRFEGDQFRFPGGGTMFP 184
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF 258
RGA AYIDDIGKLINL+DGSIRTA+DTGCGVASWGAYL+SR+I+AVSFAPRDTHEAQVQF
Sbjct: 185 RGAGAYIDDIGKLINLEDGSIRTALDTGCGVASWGAYLLSRDIIAVSFAPRDTHEAQVQF 244
Query: 259 ALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWIL 318
ALERGVP LIGV+ASIRLPYPSR+FDMAHCSRCLIPWGQ +G+YL EVDRVLRPGGYWIL
Sbjct: 245 ALERGVPGLIGVLASIRLPYPSRSFDMAHCSRCLIPWGQNEGIYLNEVDRVLRPGGYWIL 304
Query: 319 SGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIA 378
SGPP+NWE+HWKGW RT E+LK EQ+GIE +A+SLCWKKL+QK DLAIWQKPTNH+HC
Sbjct: 305 SGPPINWENHWKGWERTRENLKEEQDGIEKVAKSLCWKKLVQKGDLAIWQKPTNHIHCKI 364
Query: 379 NRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVN 438
R+V+K FC+A+DPD AWYTKM+TCLTPLPEV++I+E++GG+L+ WPERL ++PPR++
Sbjct: 365 TRKVYKNRPFCEAKDPDTAWYTKMDTCLTPLPEVNDIREVSGGELSNWPERLTSVPPRIS 424
Query: 439 RGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDP 498
G++ G+TAEMF+E+ LWKKRV YYK++DYQLA+ GRYRNLLDMNAYLGGFAAAL+DDP
Sbjct: 425 SGSLKGITAEMFKENNELWKKRVAYYKTLDYQLAERGRYRNLLDMNAYLGGFAAALIDDP 484
Query: 499 LWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
+WVMNTVPVEA++NTLG IYERGLIGTY NW +S R+Y +
Sbjct: 485 VWVMNTVPVEAEVNTLGAIYERGLIGTYMNWCEAMSTYPRTYDFM 529
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 544 | ||||||
| TAIR|locus:2117728 | 633 | AT4G00750 [Arabidopsis thalian | 0.990 | 0.851 | 0.670 | 1.1e-211 | |
| TAIR|locus:2050679 | 631 | AT2G45750 [Arabidopsis thalian | 0.966 | 0.833 | 0.680 | 2.2e-208 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.904 | 0.769 | 0.606 | 7.4e-176 | |
| TAIR|locus:2127711 | 633 | AT4G10440 [Arabidopsis thalian | 0.961 | 0.826 | 0.577 | 9.9e-174 | |
| TAIR|locus:2202805 | 616 | AT1G26850 [Arabidopsis thalian | 0.931 | 0.823 | 0.534 | 3.8e-156 | |
| TAIR|locus:2141035 | 621 | AT4G18030 [Arabidopsis thalian | 0.930 | 0.814 | 0.541 | 3.2e-152 | |
| TAIR|locus:2041031 | 611 | AT2G43200 [Arabidopsis thalian | 0.832 | 0.741 | 0.509 | 2.3e-133 | |
| TAIR|locus:2034522 | 603 | AT1G31850 [Arabidopsis thalian | 0.882 | 0.796 | 0.464 | 1e-123 | |
| TAIR|locus:2134756 | 600 | ERD3 "early-responsive to dehy | 0.801 | 0.726 | 0.484 | 2e-118 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.788 | 0.688 | 0.426 | 5.8e-98 |
| TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2046 (725.3 bits), Expect = 1.1e-211, P = 1.1e-211
Identities = 367/547 (67%), Positives = 442/547 (80%)
Query: 1 MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS 60
M N ++LS ++ + K NLY + L+ ILC FY G+WQHS I ++ + LTS
Sbjct: 1 MGNYRWPSKLSKLSLRAKQTNLYRVILIAILCVTFYFVGVWQHSGRGISRSSISNHELTS 60
Query: 61 VPCSSTSAKASTNLNLDFSAHHQAPDPPPTL--ARVTYIPPCDPKYVENVPCEDTHRSLK 118
VPC T +T + L+F++ H APD PPT+ ARV IP C ++ E PCE +RSL
Sbjct: 61 VPC--TFPHQTTPI-LNFASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLN 117
Query: 119 FDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQ 178
F R+RLIYRERHCPEK E+++CR+PAP+GY++PFRWPESR AW+ANVPH ELTVEKKNQ
Sbjct: 118 FPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQ 177
Query: 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS 238
NWVR++ DRF FPGGGTMFPRGADAYID+IG+LINLKDGSIRTAIDTGCGVAS+GAYLMS
Sbjct: 178 NWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMS 237
Query: 239 RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298
RNI+ +SFAPRDTHEAQVQFALERGVPA+IGV+ASIRLP+P+RAFD+AHCSRCLIPWGQY
Sbjct: 238 RNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQY 297
Query: 299 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358
+G YLIEVDRVLRPGGYWILSGPP+NW+ HWKGW RT +DL SEQ+ IE +ARSLCW+KL
Sbjct: 298 NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKL 357
Query: 359 IQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEV--SNIK 416
+Q++DLA+WQKPTNHVHC NR +P FC P+ WYTK+ETCLTPLPEV S IK
Sbjct: 358 VQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIK 417
Query: 417 EIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGR 476
E+AGGQL +WPERLNA+PPR+ G+++G+T + F +T W++RV+YYK D QLA+ GR
Sbjct: 418 EVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGR 477
Query: 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL 536
YRN LDMNA+LGGFA+ALVDDP+WVMN VPVEA +NTLGVIYERGLIGTYQNW +S
Sbjct: 478 YRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTY 537
Query: 537 -RSYSLI 542
R+Y I
Sbjct: 538 PRTYDFI 544
|
|
| TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2015 (714.4 bits), Expect = 2.2e-208, P = 2.2e-208
Identities = 364/535 (68%), Positives = 424/535 (79%)
Query: 13 ITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKAST 72
I+ +TK ANLY +TLV +LC YL G+WQ++ RAA S PC + ST
Sbjct: 7 ISSRTKKANLYYVTLVALLCIASYLLGIWQNTAVNPRAAFDDSD---GTPCEGFTRPNST 63
Query: 73 NLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCP 132
+LDF AHH DPPP P C E+ PCED RSLKF R+RL YR+RHCP
Sbjct: 64 K-DLDFDAHHNIQDPPPVTETAVSFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQRHCP 122
Query: 133 EKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPG 192
E+ E+LKCR+PAP+GY PFRWP SR AW+ANVPH ELTVEKKNQNWVR++ DRF FPG
Sbjct: 123 EREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFWFPG 182
Query: 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTH 252
GGTMFPRGADAYIDDIG+LI+L DGSIRTAIDTGCGVAS+GAYL+SRNI +SFAPRDTH
Sbjct: 183 GGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTH 242
Query: 253 EAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP 312
EAQVQFALERGVPA+IG+MA+IRLPYPSRAFD+AHCSRCLIPWGQ DG YL+EVDRVLRP
Sbjct: 243 EAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLMEVDRVLRP 302
Query: 313 GGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTN 372
GGYWILSGPP+NW+ WKGW RT +DL +EQ IE +ARSLCWKK++Q+ DLAIWQKP N
Sbjct: 303 GGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQKPFN 362
Query: 373 HVHCIANRRVFKKPRFCKA-QDPDMAWYTKMETCLTPLPEVSN---IKEIAGGQLTKWPE 428
H+ C R V K P FC+ QDPDMAWYTKM++CLTPLPEV + +K +AGG++ KWP
Sbjct: 363 HIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDLKTVAGGKVEKWPA 422
Query: 429 RLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLG 488
RLNAIPPRVN+GA++ +T E F E+T LWK+RV+YYK +DYQL + GRYRNL+DMNAYLG
Sbjct: 423 RLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETGRYRNLVDMNAYLG 482
Query: 489 GFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
GFAAAL DDP+WVMN VPVEAK+NTLGVIYERGLIGTYQNW +S R+Y I
Sbjct: 483 GFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFI 537
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1671 (593.3 bits), Expect = 7.4e-176, Sum P(2) = 7.4e-176
Identities = 301/496 (60%), Positives = 372/496 (75%)
Query: 49 RAATSPSSILTSVPCSSTSAKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENV 108
RA T+ + S +S+S +S + LDF +HH+ + T V Y PCD E
Sbjct: 63 RAQTTQTQTNPSSDDTSSSLSSSEPVELDFESHHKL-ELKITNQTVKYFEPCDMSLSEYT 121
Query: 109 PCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPH 168
PCED R +FDR+ + YRERHCP K ELL C +P P Y +PF+WP+SR +AWY N+PH
Sbjct: 122 PCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPH 181
Query: 169 KELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCG 228
KEL++EK QNW++ +G+RF FPGGGTMFPRGADAYIDDI +LI L DG+IRTAIDTGCG
Sbjct: 182 KELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCG 241
Query: 229 VASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288
VAS+GAYL+ R+I+A+SFAPRDTHEAQVQFALERGVPA+IG+M S RLPYP+RAFD+AHC
Sbjct: 242 VASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHC 301
Query: 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIET 348
SRCLIPW Q DGLYL EVDRVLRPGGYWILSGPP+NW+ +WKGW R+ EDLK EQ+ IE
Sbjct: 302 SRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIED 361
Query: 349 IARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQD-PDMAWYTKMETCLT 407
ARSLCWKK+ +K DL+IWQKP NHV C +RV K P C D PD AWY +E+C+T
Sbjct: 362 AARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVT 421
Query: 408 PLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSV 467
PLPE ++ E AGG L WP R A+PPR+ G + + AE FRED +WK+R++YYK +
Sbjct: 422 PLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQI 481
Query: 468 DYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ 527
+L++ GR+RN++DMNAYLGGFAAA++ P WVMN VPV+A+ TLGVI+ERG IGTYQ
Sbjct: 482 MPELSR-GRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQ 540
Query: 528 NWYVFISPL-RSYSLI 542
+W S R+Y LI
Sbjct: 541 DWCEGFSTYPRTYDLI 556
|
|
| TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1688 (599.3 bits), Expect = 9.9e-174, P = 9.9e-174
Identities = 306/530 (57%), Positives = 392/530 (73%)
Query: 16 KTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILT-SVPCSSTSAKAST-N 73
+ + L I V+ LC +FY+ G WQ + + ++ S T S P SS+S+ +S+ +
Sbjct: 13 EARRKKLTLILGVSGLCILFYVLGAWQAN--TVPSSISKLGCETQSNPSSSSSSSSSSES 70
Query: 74 LNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPE 133
LDF +H+Q + T + Y PC+ E PCED R +FDR+ + YRERHCP
Sbjct: 71 AELDFKSHNQI-ELKETNQTIKYFEPCELSLSEYTPCEDRQRGRRFDRNMMKYRERHCPV 129
Query: 134 KTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGG 193
K ELL C +P P Y +PF+WP+SR +AWY N+PHKEL+VEK QNW++ +GDRF FPGG
Sbjct: 130 KDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQVEGDRFRFPGG 189
Query: 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHE 253
GTMFPRGADAYIDDI +LI L DG IRTAIDTGCGVAS+GAYL+ R+I+AVSFAPRDTHE
Sbjct: 190 GTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHE 249
Query: 254 AQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPG 313
AQVQFALERGVPA+IG+M S RLPYP+RAFD+AHCSRCLIPW + DGLYL+EVDRVLRPG
Sbjct: 250 AQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGLYLMEVDRVLRPG 309
Query: 314 GYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNH 373
GYWILSGPP+NW+ +W+GW RT EDLK EQ+ IE +A+SLCWKK+ +K DL+IWQKP NH
Sbjct: 310 GYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVTEKGDLSIWQKPLNH 369
Query: 374 VHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAI 433
+ C ++ K P C + + D AWY +ETC+TPLPE +N + AGG L WP+R A+
Sbjct: 370 IECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDSAGGALEDWPDRAFAV 429
Query: 434 PPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAA 493
PPR+ RG + + AE FRED +WK+R+ +YK + +L+ GR+RN++DMNA+LGGFAA+
Sbjct: 430 PPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSH-GRFRNIMDMNAFLGGFAAS 488
Query: 494 LVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
++ P WVMN VPV+A+ TLGVIYERGLIGTYQ+W S R+Y +I
Sbjct: 489 MLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRTYDMI 538
|
|
| TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 280/524 (53%), Positives = 360/524 (68%)
Query: 25 ITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNL--NLDFSAHH 82
I +V LC FY+ G WQ S G + S+ T++ A N+ +L+F HH
Sbjct: 18 IFIVFSLCCFFYILGAWQRS-GFGKG--------DSIALEMTNSGADCNIVPSLNFETHH 68
Query: 83 QAPDP---PPTLARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLK 139
A+V PCD +Y + PC+D R++ F RD +IYRERHC + E L
Sbjct: 69 AGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHCAPENEKLH 128
Query: 140 CRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPR 199
C +PAP GY PF WP+SR + YAN P+K LTVEK QNW++++GD F FPGGGT FP+
Sbjct: 129 CLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFPGGGTQFPQ 188
Query: 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA 259
GAD YID + +I +++G++RTA+DTGCGVASWGAYL SRN+ A+SFAPRD+HEAQVQFA
Sbjct: 189 GADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEAQVQFA 248
Query: 260 LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319
LERGVPA+IGV+ +I+LPYP+RAFDMAHCSRCLIPWG DG+YL+EVDRVLRPGGYWILS
Sbjct: 249 LERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGANDGMYLMEVDRVLRPGGYWILS 308
Query: 320 GPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIAN 379
GPP+NW+ ++K W R EDL+ EQ IE A+ LCW+K + ++AIWQK N C +
Sbjct: 309 GPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHGEIAIWQKRVNDEAC-RS 367
Query: 380 RRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNR 439
R+ + FCK D D WY KME C+TP PE S+ E+AGG+L +P+RLNA+PPR++
Sbjct: 368 RQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVPPRISS 427
Query: 440 GAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPL 499
G++ GVT + + +D WKK V YK ++ L GRYRN++DMNA GGFAAAL L
Sbjct: 428 GSISGVTVDAYEDDNRQWKKHVKAYKRIN-SLLDTGRYRNIMDMNAGFGGFAAALESQKL 486
Query: 500 WVMNTVPVEAKINTLGVIYERGLIGTYQNWY-VFISPLRSYSLI 542
WVMN VP A+ N LGV+YERGLIG Y +W F + R+Y LI
Sbjct: 487 WVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDLI 530
|
|
| TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1485 (527.8 bits), Expect = 3.2e-152, P = 3.2e-152
Identities = 282/521 (54%), Positives = 356/521 (68%)
Query: 24 SITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTSVPCSSTSAKASTNLNLDFSAHHQ 83
S+ +V LC FYL G WQ S G + + I C+ +LDF HH
Sbjct: 18 SLLVVVGLCCFFYLLGAWQKS-GFGKGDSIAMEITKQAQCTDIVT------DLDFEPHHN 70
Query: 84 APDPPPTL-ARVTYIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRV 142
P + PCD K + PC++ R++KF R+ +IYRERHCP E L+C V
Sbjct: 71 TVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPDNEKLRCLV 130
Query: 143 PAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGAD 202
PAP GY PF WP+SR + YAN P K LTVEK QNWV+FQG+ F FPGGGTMFP+GAD
Sbjct: 131 PAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGTMFPQGAD 190
Query: 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER 262
AYI+++ +I +KDGS+RTA+DTGCGVASWGAY++ RN+L +SFAPRD HEAQVQFALER
Sbjct: 191 AYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQVQFALER 250
Query: 263 GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322
GVPA+I V+ SI LPYP+RAFDMA CSRCLIPW +G YL+EVDRVLRPGGYW+LSGPP
Sbjct: 251 GVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVDRVLRPGGYWVLSGPP 310
Query: 323 VNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRV 382
+NW++ K WNRT +L +EQ IE IA SLCW+K +K D+AI++K N C + V
Sbjct: 311 INWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKINDRSCDRSTPV 370
Query: 383 FKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAV 442
CK +D D WY ++ETC+TP P+VSN +E+AGG+L K+PERL A+PP +++G +
Sbjct: 371 DT----CKRKDTDDVWYKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVPPSISKGLI 426
Query: 443 DGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVM 502
+GV E ++ED LWKKRVT YK ++ +L RYRN++DMNA LGGFAAAL WVM
Sbjct: 427 NGVDEESYQEDINLWKKRVTGYKRIN-RLIGSTRYRNVMDMNAGLGGFAAALESPKSWVM 485
Query: 503 NTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
N +P K NTL V+YERGLIG Y +W S R+Y I
Sbjct: 486 NVIPTINK-NTLSVVYERGLIGIYHDWCEGFSTYPRTYDFI 525
|
|
| TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
Identities = 235/461 (50%), Positives = 315/461 (68%)
Query: 85 PDPPPTLARVT-YIPPCDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPE-KTELLKCRV 142
P PP + + ++ Y P C + +PC D + ++ +R RERHCP+ E +C V
Sbjct: 78 PPPPSSSSSLSSYFPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLV 137
Query: 143 PAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGAD 202
P P GY PF WPESR++AW+ NVP K L KK QNWVR +GDRF FPGGGT FP G
Sbjct: 138 PKPTGYKTPFPWPESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVK 197
Query: 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER 262
Y+D I ++ L GSIRT +D GCGVAS+GA+L++ IL +S APRD HEAQVQFALER
Sbjct: 198 DYVDVILSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALER 257
Query: 263 GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322
G+PA++GV+++ +LPYPSR+FDM HCSRCL+ W YDGLYL+EVDRVLRP GYW+LSGPP
Sbjct: 258 GLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPP 317
Query: 323 VNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRV 382
V +K R +++L+++ + + R LCW+K+ + + IW+KP+NH+ C +
Sbjct: 318 VASRVKFKNQKRDSKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKA 377
Query: 383 FKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAV 442
K P C + DPD AWY +ME C+TPLP+V++ + L WPERLN +P R+ G++
Sbjct: 378 LKFPGLCSSSDPDAAWYKEMEPCITPLPDVNDTNKTV---LKNWPERLNHVP-RMKTGSI 433
Query: 443 DGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVM 502
G T F+ DT LW++RV YY + ++ G+YRN++DMNA LGGFAAAL+ P+WVM
Sbjct: 434 QGTTIAGFKADTNLWQRRVLYYDT-KFKFLSNGKYRNVIDMNAGLGGFAAALIKYPMWVM 492
Query: 503 NTVPVEAKINTLGVIYERGLIGTYQNWYVFISPL-RSYSLI 542
N VP + K NTLGV+Y+RGLIGTY NW +S R+Y LI
Sbjct: 493 NVVPFDLKPNTLGVVYDRGLIGTYMNWCEALSTYPRTYDLI 533
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| TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
Identities = 231/497 (46%), Positives = 317/497 (63%)
Query: 55 SSILTSVPCSSTS---AKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCE 111
S L + CS AK T A + P P + P C ++ + PC
Sbjct: 31 SFYLGGIFCSERDKIVAKDVTRTTTKAVASPKEPTATPIQIKSVSFPECGSEFQDYTPCT 90
Query: 112 DTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKEL 171
D R K+ RL + ERHCP E +C +P P GY P RWP+SR+ WY NVP+ +
Sbjct: 91 DPKRWKKYGVHRLSFLERHCPPVYEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWI 150
Query: 172 TVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLI-NLKDGSIRTAIDTGCGVA 230
+K NQ+W++ +GD+F FPGGGTMFPRG Y+D + LI +KDG++RTAIDTGCGVA
Sbjct: 151 NKQKSNQHWLKKEGDKFHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVA 210
Query: 231 SWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290
SWG L+ R IL++S APRD HEAQVQFALERG+PA++G++++ RLP+PS AFDMAHCSR
Sbjct: 211 SWGGDLLDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSR 270
Query: 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIA 350
CLIPW ++ G+YL+E+ R++RPGG+W+LSGPPVN+ W+GWN T ED KS+ N ++++
Sbjct: 271 CLIPWTEFGGIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLL 330
Query: 351 RSLCWKKLIQKKDLAIWQKPTNHVHC---IANRRVFKKPRFCKAQDPDMAWYTKMETCLT 407
S+C+KK QK D+A+WQK ++ C IA P+ + +PD AWYT + C+
Sbjct: 331 TSMCFKKYAQKDDIAVWQKLSDK-SCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVV 389
Query: 408 -PLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKS 466
P P+V K+ G + KWPERL+ P R+ G V G +A + D WK RV +YK
Sbjct: 390 APTPKV---KKSGLGSIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKK 444
Query: 467 VDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTY 526
V L + RN++DMN GGF+AAL++DP+WVMN V N+L V+++RGLIGTY
Sbjct: 445 VLPALGTD-KIRNVMDMNTVYGGFSAALIEDPIWVMNVVS-SYSANSLPVVFDRGLIGTY 502
Query: 527 QNWY-VFISPLRSYSLI 542
+W F + R+Y L+
Sbjct: 503 HDWCEAFSTYPRTYDLL 519
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| TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
Identities = 217/448 (48%), Positives = 297/448 (66%)
Query: 100 CDPKYVENVPCEDTHRSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQ 159
C Y + PC D + K+ RL + ERHCP + +C VP P GY P RWP+S+
Sbjct: 73 CSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPPPDGYKPPIRWPKSKD 132
Query: 160 FAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLI-NLKDGS 218
WY NVP+ + +K NQNW+R +G++F FPGGGTMFP G AY+D + LI +KDG+
Sbjct: 133 ECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHGVSAYVDLMQDLIPEMKDGT 192
Query: 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278
IRTAIDTGCGVASWG L+ R IL VS APRD HEAQVQFALERG+PA++G++++ RLP+
Sbjct: 193 IRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPF 252
Query: 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTED 338
PS +FDMAHCSRCLIPW ++ G+YL+EV R+LRPGG+W+LSGPPVN+E+ WKGW+ T E+
Sbjct: 253 PSNSFDMAHCSRCLIPWTEFGGVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEE 312
Query: 339 LKSEQNGIETIARSLCWKKLIQKKDLAIWQK-PTNHVHC-IANRRVFKKPRFCKAQDPDM 396
+S ++ + S+C+K +K D+A+WQK P N + ++N P+ + +PD
Sbjct: 313 QRSNYEKLQELLSSMCFKMYAKKDDIAVWQKSPDNLCYNKLSNDPDAYPPKCDDSLEPDS 372
Query: 397 AWYTKMETCLT-PLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTA 455
AWYT + C+ P P+ +K+ KWPERL+ P R++ V G +F+ D +
Sbjct: 373 AWYTPLRPCVVVPSPK---LKKTDLESTPKWPERLHTTPERISD--VPGGNGNVFKHDDS 427
Query: 456 LWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLG 515
WK R +YK + + + RN++DMN GG AAALV+DPLWVMN V A NTL
Sbjct: 428 KWKTRAKHYKKLLPAIGSD-KIRNVMDMNTAYGGLAAALVNDPLWVMNVVSSYAA-NTLP 485
Query: 516 VIYERGLIGTYQNWY-VFISPLRSYSLI 542
V+++RGLIGTY +W F + R+Y L+
Sbjct: 486 VVFDRGLIGTYHDWCEAFSTYPRTYDLL 513
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| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 195/457 (42%), Positives = 274/457 (59%)
Query: 98 PPCDPKYVENVPCEDTH----RSLKFDRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFR 153
P CD ++ E +PC D + LK D + + ERHCP C +P P GY VP +
Sbjct: 85 PVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYKVPIK 144
Query: 154 WPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLIN 213
WP+SR W AN+PH L EK +QNW+ +G++ SFPGGGT F GAD YI I ++N
Sbjct: 145 WPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIASIANMLN 204
Query: 214 -----LKD-GSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPAL 267
L D G +RT +D GCGVAS+GAYL++ +I+ +S AP D H+ Q+QFALERG+PA
Sbjct: 205 FSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFALERGIPAY 264
Query: 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES 327
+GV+ + RLPYPSR+F+ AHCSRC I W Q DGL L+E+DRVLRPGGY+ S P
Sbjct: 265 LGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSSP------ 318
Query: 328 HWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPR 387
+ + + E+LK + + + +CW+ +++ +WQKP ++ C R +P
Sbjct: 319 --EAYAQDEENLKIWKE-MSALVERMCWRIAVKRNQTVVWQKPLSN-DCYLEREPGTQPP 374
Query: 388 FCKAQ-DPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVT 446
C++ DPD ME C+TP + + + G L WP RL + PPR+ A G +
Sbjct: 375 LCRSDADPDAVAGVSMEACITPYSKHDH--KTKGSGLAPWPARLTSSPPRL---ADFGYS 429
Query: 447 AEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVP 506
+MF +DT LWK++V Y ++ + RN++DM A++G FAAAL D +WVMN V
Sbjct: 430 TDMFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKDKDVWVMNVVS 489
Query: 507 VEAKINTLGVIYERGLIGTYQNWY-VFISPLRSYSLI 542
+ NTL +IY+RGLIGT NW F + R+Y L+
Sbjct: 490 PDGP-NTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLL 525
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZPH9 | PMTF_ARATH | 2, ., 1, ., 1, ., - | 0.6691 | 0.9908 | 0.8515 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00021435 | hypothetical protein (622 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 544 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 5e-06 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 696 bits (1798), Expect = 0.0
Identities = 255/443 (57%), Positives = 318/443 (71%), Gaps = 18/443 (4%)
Query: 106 ENVPCEDTHRSLKF--DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWY 163
+ +PC D R++KF R+R+ +RERHCP E L+C VP P GY P WP+SR WY
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 164 ANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRT 221
ANVPH +L EK QNWV+ +GD+F FPGGGT FP GADAYID + ++I G +RT
Sbjct: 61 ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 222 AIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281
A+D GCGVAS+GAYL+SR++L +SFAP+D HEAQVQFALERGVPA++GV+ + RLPYPSR
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180
Query: 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKS 341
+FDMAHCSRCLIPW DG+ L+EVDRVLRPGGY++LSGPPV R EDL+
Sbjct: 181 SFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVY--------ARDEEDLQE 232
Query: 342 EQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCK-AQDPDMAWYT 400
E +E +A+SLCWK + +K D+AIWQKP N+ C R KKP CK + DPD AWY
Sbjct: 233 EWKAMEALAKSLCWKLVAKKGDIAIWQKPVNN-SCYNKREPGKKPPLCKDSDDPDAAWYV 291
Query: 401 KMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKR 460
ME C+TPLPEVS+ E+ GG L KWPERL A+PPR+ G + GV+AE F+ DT LWK+R
Sbjct: 292 PMEACITPLPEVSH--EVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRR 349
Query: 461 VTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 520
V+ YK + L GR RN++DMNA GGFAAAL+DDP+WVMN VPV +TL VIY+R
Sbjct: 350 VSKYKRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPV-DSPDTLPVIYDR 408
Query: 521 GLIGTYQNW-YVFISPLRSYSLI 542
GLIG Y +W F + R+Y L+
Sbjct: 409 GLIGIYHDWCEPFSTYPRTYDLL 431
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This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-06
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 223 IDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279
+D GCG L R + V D + A +R + V + LP+P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKFV-VGDAEDLPFP 54
Query: 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGY 315
+FD+ S ++ L E+ RVL+PGG
Sbjct: 55 DESFDVVVSS-LVLHHLPDPERALREIARVLKPGGK 89
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Members of this family are SAM dependent methyltransferases. Length = 92 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 544 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.63 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.61 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.58 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.52 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.51 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.51 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.47 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.47 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.47 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.45 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.43 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.41 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.39 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.38 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.38 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.37 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.36 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.36 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.35 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.35 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.34 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.34 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.34 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.32 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.31 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.31 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.31 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.3 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.3 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.3 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.29 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.28 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.26 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.25 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.25 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.25 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.25 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.25 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.24 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.21 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.19 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.18 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.18 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.17 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.17 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.16 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.15 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.14 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.14 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.14 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.13 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.13 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.13 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.13 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.13 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.11 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.1 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.1 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.09 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.09 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.09 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.09 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.08 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.07 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.06 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.06 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.04 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.04 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.03 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.03 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.03 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.01 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.0 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.99 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.99 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.98 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.98 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.97 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.97 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.96 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.95 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.95 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.94 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.93 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.93 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.91 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.91 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.91 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.87 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.87 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.87 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.87 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.84 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.84 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.83 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.83 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.82 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.82 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.81 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.81 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.79 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.77 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.74 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.74 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.73 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.72 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.72 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.71 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.7 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.68 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.68 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.67 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.64 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.64 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.62 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.62 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.62 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.58 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.58 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.56 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.56 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.52 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.52 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.5 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.5 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.49 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.48 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.46 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.46 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.44 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.43 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.42 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.41 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.41 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.4 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.37 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.37 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.35 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.34 | |
| PLN02366 | 308 | spermidine synthase | 98.31 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.28 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.28 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.26 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.24 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.21 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.17 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.17 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.15 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.15 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.15 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.14 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.14 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.11 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.1 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.08 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.06 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.06 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.02 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.01 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.0 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.0 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.96 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.96 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.9 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.9 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.87 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.84 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.83 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.81 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.79 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.79 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.75 | |
| PLN02476 | 278 | O-methyltransferase | 97.74 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.74 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.72 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.72 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.69 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.69 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.65 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.64 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.64 | |
| PLN02823 | 336 | spermine synthase | 97.63 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.61 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.6 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.59 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.58 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.57 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.49 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.46 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.44 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.42 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.41 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.4 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.39 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.38 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.35 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.27 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.25 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.24 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.22 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.21 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.19 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.12 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.11 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.01 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.98 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.95 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.95 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.93 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.84 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.78 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.77 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.71 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.61 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.55 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.54 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.52 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.47 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.42 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.41 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.35 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.33 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.28 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.27 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.16 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.09 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.02 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.0 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 95.98 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.91 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.9 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.89 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.71 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.7 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.7 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.64 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.45 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.19 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.73 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 94.63 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.58 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.34 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.31 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.08 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.03 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 93.99 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 93.97 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.95 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.94 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 93.74 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.19 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 92.75 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.57 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 92.56 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.41 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 92.2 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 91.72 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 91.52 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.32 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 90.68 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 89.84 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 89.51 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.32 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 88.96 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 88.62 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 88.6 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 88.28 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 87.55 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 87.41 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 87.0 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 86.47 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 86.36 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 86.08 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 85.06 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 84.78 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 83.51 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 82.44 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 81.35 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 80.89 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 80.16 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-141 Score=1117.31 Aligned_cols=426 Identities=61% Similarity=1.155 Sum_probs=412.4
Q ss_pred CCcCCCCchhhhcc--ccccchhhccCCCCCCCCCccccCCCCCCCCCCCCCCccccccccCCCCchhhHHHhhcceeee
Q 009069 106 ENVPCEDTHRSLKF--DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRF 183 (544)
Q Consensus 106 ~y~pC~d~~~~~~~--~~~~~~~~er~C~p~~~r~~Clvp~P~~y~~P~~wP~Srd~~w~~n~p~~~L~~~k~~q~w~~~ 183 (544)
||+||+|+.+++++ .+++++|||||||+.++|++||||+|++|++||+||+|||++||+|+||++|+++|+.|+|+..
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceecCCCCCCCcccHHHHHHHHHHHhcc--cCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHH
Q 009069 184 QGDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE 261 (544)
Q Consensus 184 ~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~e 261 (544)
+|+.|.|||+|++|+.|++.|+++|.++++. ..+.+|++||||||+|+|+++|++++|+++++++++.+++++|+|++
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999987 77889999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHh
Q 009069 262 RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKS 341 (544)
Q Consensus 262 rgv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~ 341 (544)
||+++.+.+...++|||++++||+|||++|+++|..+.+.+|.|++|+|||||+|++++||.+ .++.+++.+
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~ 232 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEE 232 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHH
Confidence 999999998889999999999999999999999999889999999999999999999999988 366788899
Q ss_pred hhhhHHHHHHhhcceeeeeeccEEEEeccCCCcccccccccCCCCCCCC-CCCCCchhhhhhhccccCCCCCcchhhhcC
Q 009069 342 EQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCK-AQDPDMAWYTKMETCLTPLPEVSNIKEIAG 420 (544)
Q Consensus 342 ~~~~ie~la~~l~w~~v~~~~~~aIwqKP~~~~~c~~~~~~~~~p~~C~-~~~~d~~wy~~l~~Ci~~~p~~~~~~~~~~ 420 (544)
+|+.|++++++|||+++.++++++|||||.+| +||.+|+..+.|++|+ ++|+|++||++|++|||++|++++ ++++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~~ 309 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIAG 309 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--cccc
Confidence 99999999999999999999999999999998 9999999889999999 899999999999999999998754 7889
Q ss_pred CcccCCchhhcCCCcccccCcccCcchHhhHHhhHHHHHHHHHHHhhhh-cCCCCCCcchhhhccccccchhhhccCCCc
Q 009069 421 GQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDY-QLAQPGRYRNLLDMNAYLGGFAAALVDDPL 499 (544)
Q Consensus 421 ~~~~~~p~r~~~~p~~~~~~~~~~~~~~~~~~d~~~w~~~v~~y~~~~~-~~~~~~~~rnvmdm~a~~ggfaaal~~~~~ 499 (544)
+++++||+||+++|+||+++++.|+++|+|++|+++||++|++||++++ .+++ ++|||||||||+||||||||+++||
T Consensus 310 ~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~-~~iRNVMDMnAg~GGFAAAL~~~~V 388 (506)
T PF03141_consen 310 GWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKW-GRIRNVMDMNAGYGGFAAALIDDPV 388 (506)
T ss_pred cCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccc-cceeeeeeecccccHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999988 5777 9999999999999999999999999
Q ss_pred eeeEecCCCCCCCccccccccccccccccccCCCCC-CCcccccCC
Q 009069 500 WVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISP-LRSYSLIST 544 (544)
Q Consensus 500 wvmnvvp~~~~~~tl~~i~~rglig~~hdwce~f~t-prtydl~ha 544 (544)
|||||||+.++ |||||||||||||+||||||+||| |||||||||
T Consensus 389 WVMNVVP~~~~-ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 389 WVMNVVPVSGP-NTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eEEEecccCCC-CcchhhhhcccchhccchhhccCCCCcchhheeh
Confidence 99999999886 999999999999999999999999 999999998
|
; GO: 0008168 methyltransferase activity |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=151.55 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=89.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
+.+.+.+...+ +.+|||||||||.++..+++. .++++|+++.|+..+..+........+.++++|++.|||+|+
T Consensus 41 ~~~i~~~~~~~--g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLLGIKP--GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhhCCCC--CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 44555555443 449999999999999999886 588888888777655544332222238899999999999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+||+|.+++.+.++. +...+|+|+.|||||||.+++..
T Consensus 119 sFD~vt~~fglrnv~-d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 119 SFDAVTISFGLRNVT-DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred ccCEEEeeehhhcCC-CHHHHHHHHHHhhcCCeEEEEEE
Confidence 999999999996666 58999999999999999998875
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=151.12 Aligned_cols=111 Identities=26% Similarity=0.388 Sum_probs=79.9
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
.+.+.+....+. +|||+|||||.++..++++ .++++|+++.|+..+..+.......++.+.++|++.+|++++
T Consensus 38 ~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDN 115 (233)
T ss_dssp HHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT
T ss_pred HHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCC
Confidence 344555444444 8999999999999999875 478889988888766655554333478999999999999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+||+|.|++.++.++ +...+|+|+.|+|||||.|++.+
T Consensus 116 sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 116 SFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 999999999997666 48899999999999999999975
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-15 Score=124.57 Aligned_cols=92 Identities=27% Similarity=0.431 Sum_probs=72.4
Q ss_pred EEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccccccccCh
Q 009069 223 IDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299 (544)
Q Consensus 223 LDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~ 299 (544)
||+|||+|.++..|+++ +..++.+ |+++.+++.++++.. ...+...+...+|+++++||+|++..+++|+ ++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~---D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGI---DISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEE---ES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEE---eCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCH
Confidence 89999999999999988 5444444 445556666665542 3558889999999999999999999999777 557
Q ss_pred HHHHHHHHHcccCCcEEEE
Q 009069 300 GLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 300 ~~~L~Ei~RVLKPGG~Lvi 318 (544)
..+++|+.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-14 Score=142.69 Aligned_cols=123 Identities=15% Similarity=0.242 Sum_probs=92.3
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe
Q 009069 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVM 271 (544)
Q Consensus 195 ~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~ 271 (544)
.++..|.....+.+.+.+.+.++. +|||||||+|..+..|++. .++++|+++.++..+..... ....+.+..+
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~--~~~~i~~~~~ 106 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS--DKNKIEFEAN 106 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC--cCCceEEEEC
Confidence 344455555566777777666554 8999999999999888764 46777776655543332211 1235778888
Q ss_pred ccccCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 272 ASIRLPYPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 272 d~~~LPfpd~sFDlV~~~~~l~h~~~-d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|....|+++++||+|++..+++|+.. +...+|+++.|+|||||+|+++..
T Consensus 107 D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 107 DILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88888999999999999988888763 568999999999999999999865
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=142.70 Aligned_cols=119 Identities=19% Similarity=0.362 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhccc---CCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEec
Q 009069 201 ADAYIDDIGKLINLK---DGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMA 272 (544)
Q Consensus 201 a~~~i~~L~~lL~l~---~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d 272 (544)
....++++.+.+.+. ...+.+|||||||+|.++..|+++ .++++|+++.++..+.. .+.+.+. ++.+.++|
T Consensus 98 q~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 98 QIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcC
Confidence 344555555555441 123458999999999999999875 57788887766654433 3334443 57888999
Q ss_pred cccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 273 SIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 273 ~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+|+++++||+|++..+++|+.+ ...++.++.|+|||||.|++...
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~d-~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMPD-KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred cccCCCCCCCccEEEECCchhccCC-HHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999999999999988874 78999999999999999999863
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=139.25 Aligned_cols=110 Identities=17% Similarity=0.113 Sum_probs=86.1
Q ss_pred HHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHH--Hc-CCCeEEEEeccccCCCCC
Q 009069 209 GKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFAL--ER-GVPALIGVMASIRLPYPS 280 (544)
Q Consensus 209 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~--er-gv~~~~~v~d~~~LPfpd 280 (544)
.+.+.... +.+|||+|||+|.++..|+++ .++++|+++.|+..+..+... .. ..++.+.++|...+|+++
T Consensus 66 ~~~~~~~~--~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 66 VSWSGAKM--GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred HHHhCCCC--CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 34444444 348999999999999888764 478888888777655433211 11 235788899999999999
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|+++.+++++. ++..++.|+.|+|||||+|++.+.
T Consensus 144 ~sfD~V~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 144 CYFDAITMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCEeEEEEecccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999999999997765 589999999999999999999864
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-13 Score=139.88 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=103.3
Q ss_pred CCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
.+.+|||||||+|.++..|++.+ |+++|+++.++..++.. +...+ ..+.+..++++.+++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 34589999999999999998874 67777766665544432 22222 257788888889998889999999999998
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeCCCCcccc---------ccCCCcch-hhh--HhhhhhHHHHHHhhcceeeeee
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESH---------WKGWNRTT-EDL--KSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~---------~~~w~~t~-e~L--~~~~~~ie~la~~l~w~~v~~~ 361 (544)
|+.+ +..++.++.|+|||||.|+++......... ...|.... +.. ....++++.+++..+++.+...
T Consensus 210 Hv~d-~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 210 HVAN-PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred hcCC-HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 8775 899999999999999999999754332100 00111110 000 1124567888888999887664
Q ss_pred ccEEEEeccCC
Q 009069 362 KDLAIWQKPTN 372 (544)
Q Consensus 362 ~~~aIwqKP~~ 372 (544)
+-. -+|..
T Consensus 289 G~~---~~p~~ 296 (322)
T PLN02396 289 GFV---YNPIT 296 (322)
T ss_pred eeE---EcCcC
Confidence 332 35654
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.3e-14 Score=137.27 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=108.1
Q ss_pred CCCCchh-hHHHhhcceeeecCCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--c
Q 009069 165 NVPHKEL-TVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--I 241 (544)
Q Consensus 165 n~p~~~L-~~~k~~q~w~~~~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V 241 (544)
++++..+ ...+-.+.||+..++.-.. . .+-.....|+.+.... ...-.+.+|||||||.|.++..|++.| |
T Consensus 11 ~id~~e~~~F~~la~~wwd~~g~f~~L-H---~~N~~rl~~i~~~~~~--~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~V 84 (243)
T COG2227 11 NVDYKELDKFEALASRWWDPEGEFKPL-H---KINPLRLDYIREVARL--RFDLPGLRVLDVGCGGGILSEPLARLGASV 84 (243)
T ss_pred cCCHHHHHHHHHHHhhhcCCCCceeee-e---eeccchhhhhhhhhhc--ccCCCCCeEEEecCCccHhhHHHHHCCCee
Confidence 4455444 3455577899876643322 1 1122233344332221 001235589999999999999999985 6
Q ss_pred EEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 242 LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 242 ~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++|+++..+..++. .|.+.++.+.+....++++-...++||+|+|..+++|.++ ++.+++.+.+.+||||.++++..
T Consensus 85 tgiD~se~~I~~Ak~-ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~d-p~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 85 TGIDASEKPIEVAKL-HALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPD-PESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred EEecCChHHHHHHHH-hhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCC-HHHHHHHHHHHcCCCcEEEEecc
Confidence 777777766655443 4567787877888888888777789999999999999886 89999999999999999999987
Q ss_pred CCCc
Q 009069 322 PVNW 325 (544)
Q Consensus 322 p~~w 325 (544)
..++
T Consensus 163 nrt~ 166 (243)
T COG2227 163 NRTL 166 (243)
T ss_pred ccCH
Confidence 5543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-13 Score=135.22 Aligned_cols=108 Identities=22% Similarity=0.371 Sum_probs=84.7
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sF 283 (544)
+.+.+.++.. ...+|||+|||+|.++..|++.+ ++++|+++ .+++.+.++.....+..+|.+.+|+++++|
T Consensus 32 ~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~-----~~l~~a~~~~~~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 32 DALLAMLPQR--KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSP-----PMLAQARQKDAADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHhcCcc--CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCCCEEEcCcccCcCCCCcE
Confidence 4455555432 34589999999999999998764 56666654 555566555444567788999999999999
Q ss_pred eEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|+++.++ ||..++..+|.++.|+|||||.|+++.+
T Consensus 105 D~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 105 DLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred EEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999999988 6777789999999999999999999975
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-13 Score=129.02 Aligned_cols=108 Identities=16% Similarity=0.263 Sum_probs=79.8
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCee
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFD 284 (544)
+.+.+....+ .+|||+|||+|.++..|+++ .|+++|+++.++..++.. +...++ .+.+.+.|...++++ ++||
T Consensus 22 l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD 97 (197)
T PRK11207 22 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERI-KAAENLDNLHTAVVDLNNLTFD-GEYD 97 (197)
T ss_pred HHHhcccCCC--CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHcCCCcceEEecChhhCCcC-CCcC
Confidence 3344443333 47999999999999999987 477888888776555543 334444 366777787777764 6799
Q ss_pred EEEecccccccccC-hHHHHHHHHHcccCCcEEEEE
Q 009069 285 MAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 285 lV~~~~~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis 319 (544)
+|+|+.++|++..+ ...++.++.|+|||||++++.
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999998665542 379999999999999997654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-13 Score=122.65 Aligned_cols=145 Identities=21% Similarity=0.398 Sum_probs=95.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
+.+.+.++.+. .....+|||||||+|.++..|++.+ ++++|+++.++. . ........+....+.+++
T Consensus 9 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 9 YADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIE-----K-----RNVVFDNFDAQDPPFPDG 77 (161)
T ss_dssp HHHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHH-----H-----TTSEEEEEECHTHHCHSS
T ss_pred HHHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHh-----h-----hhhhhhhhhhhhhhcccc
Confidence 33444445432 2334489999999999999998884 566666554443 2 223333334445556789
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCc--cccccCCC--cc--hhhhHhhhhhHHHHHHhhcc
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNW--ESHWKGWN--RT--TEDLKSEQNGIETIARSLCW 355 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w--~~~~~~w~--~t--~e~L~~~~~~ie~la~~l~w 355 (544)
+||+|+|+.+++|+.+ +..+|.++.++|||||+++++.+.... ......|. .. ........+.++.++++.+|
T Consensus 78 ~fD~i~~~~~l~~~~d-~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 78 SFDLIICNDVLEHLPD-PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp SEEEEEEESSGGGSSH-HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTE
T ss_pred chhhHhhHHHHhhccc-HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCC
Confidence 9999999999988874 899999999999999999999874321 11111111 11 11112234678889999999
Q ss_pred eeeee
Q 009069 356 KKLIQ 360 (544)
Q Consensus 356 ~~v~~ 360 (544)
+.+.+
T Consensus 157 ~iv~~ 161 (161)
T PF13489_consen 157 EIVEE 161 (161)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 87653
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=124.80 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=80.1
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDl 285 (544)
+.+.+....+ .+|||+|||+|.++.+|+++ .|+++|+++.++..+.. .+...++++.+.+.|....+++ ++||+
T Consensus 22 l~~~~~~~~~--~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 97 (195)
T TIGR00477 22 VREAVKTVAP--CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDF 97 (195)
T ss_pred HHHHhccCCC--CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCE
Confidence 3444443333 37999999999999999987 47888888776654443 3445566666666776666654 57999
Q ss_pred EEecccccccccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 286 AHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 286 V~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
|+++.+++++..+. ..+++++.|+|||||++++.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999997775433 78999999999999996665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=130.50 Aligned_cols=105 Identities=24% Similarity=0.268 Sum_probs=79.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
..+.+.+....+ .+|||||||+|.++..|+++ .++++|+++ .+++.+++++ +.+..+|...++ +++
T Consensus 19 ~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~-----~~~~~a~~~~--~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 19 YDLLARVGAERA--RRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP-----EMVAAARERG--VDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHhcC--CcEEEcChhhCC-CCC
Confidence 445555544433 48999999999999999876 466677755 4445555554 566777887774 568
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|+|+.++||+ .++..+++++.++|||||+|++..+
T Consensus 89 ~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 89 DTDVVVSNAALQWV-PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CceEEEEehhhhhC-CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 99999999999655 4589999999999999999999854
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-12 Score=125.36 Aligned_cols=113 Identities=21% Similarity=0.291 Sum_probs=86.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
+.+.+.+....+ .+|||+|||+|.++..+++. .++++|+++.++..++...+......+.+..+|...+++++
T Consensus 35 ~~~l~~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 455566655544 48999999999999988764 47888887766655444433222225778888888888888
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|++..+++++. +...++.++.|+|||||++++..+
T Consensus 113 ~~fD~V~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVP-DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCccEEEEecccccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 9999999999885554 578999999999999999998754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-13 Score=134.42 Aligned_cols=123 Identities=23% Similarity=0.409 Sum_probs=84.0
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHH----HcCC
Q 009069 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFAL----ERGV 264 (544)
Q Consensus 190 F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~----ergv 264 (544)
|+.+...+.+.....++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ .+++.|.+.+. +.|+
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCC
Confidence 33344445555566667777777777766 9999999999999999998 7766666 45666666554 4454
Q ss_pred --CeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 265 --PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 265 --~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+.+...|...++. +||.|++..+++|..... ..+++++.++|||||.+++..
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 36777777766654 899999999999997533 799999999999999999863
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-12 Score=137.06 Aligned_cols=112 Identities=18% Similarity=0.336 Sum_probs=85.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~s 282 (544)
+.+.+.+.+. .+.+|||||||+|.++..|++. .++++|+++.++..+..+ +......+.+..+|...+++++++
T Consensus 256 e~l~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLDLK--PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcCCC--CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCC
Confidence 3444554443 3458999999999999888875 477778776555433322 222233578888898888998899
Q ss_pred eeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 283 FDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
||+|+|..+++|+.+ +..++.++.|+|||||.|++...
T Consensus 333 fD~I~s~~~l~h~~d-~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 333 FDVIYSRDTILHIQD-KPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEEEECCcccccCC-HHHHHHHHHHHcCCCeEEEEEEe
Confidence 999999999988764 78999999999999999999865
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=129.37 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=82.7
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHH-HcCCCeEEEEeccccCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFAL-ERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~-ergv~~~~~v~d~~~LPfpd~ 281 (544)
+.+...+... .+++|||||||+|.++..+++.+ |+++|+++.++......... ....++.+..++.+.+|+ ++
T Consensus 112 ~~l~~~l~~l--~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 112 DRVLPHLSPL--KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHHhhCCC--CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 4444455322 34589999999999999998863 77777776655432211111 113357888888999998 78
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+||+|+|..+++|.. ++..+|+++.++|||||.|+++.
T Consensus 189 ~FD~V~s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 189 AFDTVFSMGVLYHRR-SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CcCEEEECChhhccC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999998765 58899999999999999999974
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-12 Score=127.80 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=84.0
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP-YPSR 281 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP-fpd~ 281 (544)
.+.+++..-.....+|||+|||+|.++..|++++ ++++|+++.++..++.. +.+.+. .+.+..++...++ ++++
T Consensus 33 ~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~-~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 33 DLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQA-AEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCccceEEEEcCHHHHhhhcCC
Confidence 3444444222334589999999999999999874 77788877776555433 333443 4677777877664 6678
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|+|..+++|+. ++..++.++.|+|||||+|++...
T Consensus 112 ~fD~V~~~~vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 112 PVDLILFHAVLEWVA-DPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred CCCEEEehhHHHhhC-CHHHHHHHHHHHcCCCeEEEEEEE
Confidence 999999999996654 588999999999999999998753
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=129.48 Aligned_cols=136 Identities=20% Similarity=0.194 Sum_probs=95.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
..+|||||||+|.++..+++. .++++|+++.++..+..+.. ...+.+..+|...+++++++||+|+++.++++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 348999999999988888763 57888887766654443221 12456788899999999999999999999977
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeC--CCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeee
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGP--PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~p--p~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~ 361 (544)
+.+ +..+|+++.|+|||||.+++.++ +..|...... .........+++.+++++.+|+.+..+
T Consensus 191 ~~d-~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~---~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 191 WPD-PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFA---DVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred CCC-HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhh---hhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 764 78899999999999999998764 2222211100 000001123556778888899877643
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=118.40 Aligned_cols=116 Identities=24% Similarity=0.346 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
..+.+.+.+.+....+. +|||+|||+|.++..+++. .++++|+++..+..+... .......+.+...|...+
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccC
Confidence 34555666666655544 8999999999999988764 477788866555433322 112234577888888888
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++++||+|++..+++|+.+ +..+++++.++|||||++++..+
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLED-PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCCceEEEEechhhccCC-HHHHHHHHHHHhcCCcEEEEEec
Confidence 888899999999999977764 88999999999999999999875
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-12 Score=125.34 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=78.8
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEecc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYPSRAFDMAHCSR 290 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~LPfpd~sFDlV~~~~ 290 (544)
...+|||+|||+|.++..++++ .++++|+++.++..++.+..... ..++.+..+|...++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 3448999999999999888763 47888888877765554333211 23578888898888865 489999999
Q ss_pred cccccccC-hHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQY-DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+.+. ...+++++.|+|||||.|+++.+
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99777642 37899999999999999999965
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-12 Score=125.68 Aligned_cols=87 Identities=18% Similarity=0.165 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+.+|||||||+|.++..|+++ .++++|+++.|+ +.|.++. .+.+++.+.+|+++++||+|+++.+++|+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-----~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-----KMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-----HHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 348999999999999999886 466666655554 4444432 34678899999999999999999999665
Q ss_pred ccChHHHHHHHHHcccCCc
Q 009069 296 GQYDGLYLIEVDRVLRPGG 314 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG 314 (544)
. +++.+++|+.|+|||.+
T Consensus 124 ~-d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 D-NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred C-CHHHHHHHHHHHhcCce
Confidence 4 58999999999999953
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-12 Score=110.03 Aligned_cols=100 Identities=21% Similarity=0.257 Sum_probs=76.0
Q ss_pred CEEEEeCCCCcHHHHHHhh--C--CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEecc-ccCCCCCCCeeEEEecc-cc
Q 009069 220 RTAIDTGCGVASWGAYLMS--R--NILAVSFAPRDTHEAQVQFALE-RGVPALIGVMAS-IRLPYPSRAFDMAHCSR-CL 292 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~--~--~V~~vdisp~dls~a~v~~A~e-rgv~~~~~v~d~-~~LPfpd~sFDlV~~~~-~l 292 (544)
.+|||||||+|.++.++++ . .++++|+++.++..++.+.... ...++.+...|. .... ..+.||+|++.. ++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEEECCCcc
Confidence 4899999999999999998 3 5788888887776666554332 235788888888 3333 345699999998 55
Q ss_pred ccccc--ChHHHHHHHHHcccCCcEEEEEe
Q 009069 293 IPWGQ--YDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 293 ~h~~~--d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+++.. +...+++++.+.|+|||+|++..
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44442 34789999999999999999975
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.8e-12 Score=124.95 Aligned_cols=108 Identities=21% Similarity=0.295 Sum_probs=80.9
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
.+.+...+.... +.+|||||||+|.++..|+++ .++++|+++. +++.+.++...+.+..+|...+. ++
T Consensus 20 ~~~ll~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~-----~i~~a~~~~~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 20 ARDLLARVPLEN--PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPA-----MLAEARSRLPDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHHhhCCCcC--CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHhCCCCeEEECchhccC-CC
Confidence 334444444443 448999999999999999875 4777777554 44555555445777778876664 45
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|+++.+++ |..+...+++++.++|||||.|++..+
T Consensus 92 ~~fD~v~~~~~l~-~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 92 QALDLIFANASLQ-WLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCccEEEEccChh-hCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 6999999999985 555678999999999999999999854
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-12 Score=127.45 Aligned_cols=123 Identities=23% Similarity=0.342 Sum_probs=92.0
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHH----HcCC
Q 009069 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFAL----ERGV 264 (544)
Q Consensus 190 F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~----ergv 264 (544)
|+.......+.....++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ +++++|.+.+. ++|.
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~Gv---TlS~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGV---TLSEEQLAYAEKRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEe---eCCHHHHHHHHHHHHHcCC
Confidence 55555556666677778888888888877 9999999999999999987 5655555 33444444433 4455
Q ss_pred C--eEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 265 P--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 265 ~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
. +.+...|... ..+.||-|++..+++|+..+. ..+|..+.++|+|||.+++..
T Consensus 121 ~~~v~v~l~d~rd---~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 121 EDNVEVRLQDYRD---FEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred CcccEEEeccccc---cccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 4 5554444433 345599999999999998755 899999999999999999975
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=122.18 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASI 274 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~ 274 (544)
+...+.+..++......+.+|||||||+|..+..|++. .++++|+++.++..++.+...... ..+.+..++..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~ 119 (247)
T PRK15451 40 SNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR 119 (247)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh
Confidence 33444444443322233458999999999998887751 588888888887766655443221 25778888888
Q ss_pred cCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 275 RLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+|++ .+|+|+++.++|++.++. ..+++++.|+|||||.|++++.
T Consensus 120 ~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 120 DIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 88765 489999999997776433 6899999999999999999863
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-11 Score=125.38 Aligned_cols=138 Identities=12% Similarity=0.091 Sum_probs=89.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHH---cCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE---RGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~e---rgv~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
+++|||||||+|.++..++..+ ++++|.++.++... +.++. ....+.+..++...+|.. .+||+|+|+.++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 4589999999999998888764 56677766555332 11211 123466677778888764 489999999999
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeCCCCcccc-----ccCCCcchh-hhHhhhhhHHHHHHhhcceeeee
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESH-----WKGWNRTTE-DLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~-----~~~w~~t~e-~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
+|+. ++..+|+++.|+|||||.|++.......... ...+.+... ........++...++.||+.+..
T Consensus 199 ~H~~-dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i 271 (314)
T TIGR00452 199 YHRK-SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRI 271 (314)
T ss_pred hccC-CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEE
Confidence 8875 5889999999999999999997431111000 000000000 00012345677888889987753
|
Known examples to date are restricted to the proteobacteria. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=125.33 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=76.9
Q ss_pred EEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 009069 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d 298 (544)
+|||+|||+|.++.+|+++ .|+++|+++.++..++ +.+.+.++++.+...|....++ +++||+|+++.++++...+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~ 200 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRE 200 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHH
Confidence 7999999999999999987 4777888776665433 3455566677777777766555 6789999999999776532
Q ss_pred -hHHHHHHHHHcccCCcEEEEEe
Q 009069 299 -DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 299 -~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
...+++++.|+|+|||++++..
T Consensus 201 ~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 201 RIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEE
Confidence 3789999999999999977754
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=120.12 Aligned_cols=97 Identities=23% Similarity=0.271 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
..+|||+|||+|.++..|++. .++++|+++.++ +.+.++. .++.+..+|...+++++++||+|++..+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-----AQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-----HHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 458999999999999999876 357777755443 3443332 246778888888998999999999999995
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|. .++..++.++.++|||||.|++..+
T Consensus 110 ~~-~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 110 WC-DDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hc-cCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 54 4588999999999999999999865
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=122.98 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=86.7
Q ss_pred cCCCCCEEEEeCCCCcHHHHHHhhC----------CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEeccccCCCCC
Q 009069 215 KDGSIRTAIDTGCGVASWGAYLMSR----------NILAVSFAPRDTHEAQVQFALERGV----PALIGVMASIRLPYPS 280 (544)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~----------~V~~vdisp~dls~a~v~~A~ergv----~~~~~v~d~~~LPfpd 280 (544)
.++.+.++||++||||-++..+.+. .|++.|+++.++..+.. .+.+++. ...+..+|++.|||++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq-Ra~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ-RAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH-HHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 4444569999999999988888763 58999999988876654 3444543 2678888999999999
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+....+.+..+++ +...|+|++|||||||.|.+-..
T Consensus 176 ~s~D~yTiafGIRN~th-~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTH-IQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred CcceeEEEecceecCCC-HHHHHHHHHHhcCCCcEEEEEEc
Confidence 99999999999877775 89999999999999999998754
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=114.42 Aligned_cols=100 Identities=25% Similarity=0.308 Sum_probs=79.9
Q ss_pred CCEEEEeCCCCcHHHHHHhh-C----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMS-R----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--YPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP--fpd~sFDlV~~~~ 290 (544)
..+|||+|||+|.++..|++ . .++++|+++.++..+.. .+.+.+. .+.+.+.|...++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 34899999999999999993 2 47888888777755554 3334455 5899999988877 66 8999999999
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++++. ++..+++++.++|++||.+++..+
T Consensus 82 ~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 82 VLHHFP-DPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp TGGGTS-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhcc-CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 995555 478999999999999999999865
|
... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=130.44 Aligned_cols=127 Identities=24% Similarity=0.413 Sum_probs=100.1
Q ss_pred ccCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 214 LKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+..+..|+|+|+.+|.|+|+++|.+..|.+|.+.|. .....+....+||+--.+.. =-+.++..+++||+||+...|.
T Consensus 361 i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhD-WCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 361 IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHD-WCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred ccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccc-hhhccCCCCcchhheehhhhhh
Confidence 567788999999999999999999999999999886 44566677788884322221 1345666689999999999887
Q ss_pred ccccCh--HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 294 PWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 294 h~~~d~--~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
.+...- +.+|.|++|+|||||+++|.+. .+...+++.+++++.|+....
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD~------------------~~vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRDT------------------VDVLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEecc------------------HHHHHHHHHHHHhCcceEEEE
Confidence 766433 7899999999999999999843 223456889999999987653
|
; GO: 0008168 methyltransferase activity |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.1e-12 Score=109.14 Aligned_cols=92 Identities=28% Similarity=0.492 Sum_probs=69.6
Q ss_pred EEEeCCCCcHHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccc-cc
Q 009069 222 AIDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRC-LI 293 (544)
Q Consensus 222 VLDIGCGtG~~a~~La~~-------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~-l~ 293 (544)
|||+|||+|..+..+.+. .++++|+++.++..+..+.. +.+.++.+.++|...+++.+++||+|+|+.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~-~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS-EDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH-HTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch-hcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999988764 46677776666544443322 3457899999999999988999999999655 77
Q ss_pred ccccCh-HHHHHHHHHcccCCc
Q 009069 294 PWGQYD-GLYLIEVDRVLRPGG 314 (544)
Q Consensus 294 h~~~d~-~~~L~Ei~RVLKPGG 314 (544)
|+.++. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 766544 789999999999998
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-11 Score=115.34 Aligned_cols=143 Identities=24% Similarity=0.328 Sum_probs=105.4
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDl 285 (544)
.|.+++ .+++ +|||+|||.|.+..+|.+ +++.+.++ +++++.+..+.++|+++.-..++..-..|++++||.
T Consensus 6 ~I~~~I--~pgs--rVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 6 IIAEWI--EPGS--RVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHc--CCCC--EEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccE
Confidence 455554 3444 899999999999999987 57877777 667777888889998765443333323499999999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEeCCC-Cccc---------------cccCCCcchhhhHhhhhhHHHH
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPV-NWES---------------HWKGWNRTTEDLKSEQNGIETI 349 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~-~w~~---------------~~~~w~~t~e~L~~~~~~ie~l 349 (544)
|+++.++.+... ++.+|.|+.|+ |...+++-|.. .|+. -...|++|+..-.-..+..+++
T Consensus 79 VIlsqtLQ~~~~-P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 79 VILSQTLQAVRR-PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDL 154 (193)
T ss_pred EehHhHHHhHhH-HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHH
Confidence 999999977664 89999999777 66777775533 3321 2345888877666667788889
Q ss_pred HHhhcceeeee
Q 009069 350 ARSLCWKKLIQ 360 (544)
Q Consensus 350 a~~l~w~~v~~ 360 (544)
.+..+++.+..
T Consensus 155 c~~~~i~I~~~ 165 (193)
T PF07021_consen 155 CRELGIRIEER 165 (193)
T ss_pred HHHCCCEEEEE
Confidence 99988876653
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-11 Score=121.79 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=78.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
+.+|||||||+|..+..+++. .++++|+++.++..+..... ..+. .+.+..++...+++++++||+|+++.++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~-~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR-KAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH-HcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 349999999999877665543 37888887776655543332 3333 5778888899999999999999999888
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++. +...++.++.|+|||||.|++++.
T Consensus 157 ~~~~-d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 157 NLSP-DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cCCC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5554 578899999999999999999864
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-12 Score=110.55 Aligned_cols=93 Identities=23% Similarity=0.277 Sum_probs=57.4
Q ss_pred EEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEecccccccc
Q 009069 223 IDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 223 LDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--fpd~sFDlV~~~~~l~h~~ 296 (544)
||||||+|.++..++++ .++++|+++.++..++.++................... ...++||+|+++.++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999888775 68899999998865555554433333333333332222 123599999999999888
Q ss_pred cChHHHHHHHHHcccCCcEE
Q 009069 297 QYDGLYLIEVDRVLRPGGYW 316 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~L 316 (544)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 66799999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=110.96 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=87.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||+|||+|.++..++.+ .++++|+++.++..++.. +.+.+. ++.+..++...++. +++||+|++...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~-~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV-AAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 458999999999988888753 588888887777555543 334444 47888888888776 779999998642
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeee
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~ 359 (544)
.+...++.++.++|||||.|++...+.. ...++++++..+|....
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~------------------~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDP------------------EEEIAELPKALGGKVEE 166 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCCh------------------HHHHHHHHHhcCceEee
Confidence 2357899999999999999999865311 23477788888997554
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=116.96 Aligned_cols=208 Identities=19% Similarity=0.259 Sum_probs=139.2
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFD 284 (544)
+|...+++.. .++|.|+|||+|..+..|+++ +..+.+| |.+.+|++.|.++.+++.|..+|....- ++..+|
T Consensus 21 dLla~Vp~~~--~~~v~DLGCGpGnsTelL~~RwP~A~i~Gi---DsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~d 94 (257)
T COG4106 21 DLLARVPLER--PRRVVDLGCGPGNSTELLARRWPDAVITGI---DSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTD 94 (257)
T ss_pred HHHhhCCccc--cceeeecCCCCCHHHHHHHHhCCCCeEeec---cCCHHHHHHHHHhCCCCceecccHhhcC-CCCccc
Confidence 3444444443 448999999999999999998 4444555 5566777788889999999999987765 667899
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeeccE
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDL 364 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~~ 364 (544)
+++++.+| ||.++-..+|..+...|.|||.|.+..|. |+.. .....|++.++..-|........+
T Consensus 95 llfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPd-N~de-------------psH~~mr~~A~~~p~~~~l~~~~~ 159 (257)
T COG4106 95 LLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPD-NLDE-------------PSHRLMRETADEAPFAQELGGRGL 159 (257)
T ss_pred hhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCC-ccCc-------------hhHHHHHHHHhcCchhhhhCcccc
Confidence 99999988 88887899999999999999999999872 2111 123457778887777666544333
Q ss_pred EEEeccCCCcccccccccCCCCCCCCCCCCCchhhhhhhccccCCCCCcc-hhhhcCCcccCCchhhcCCCcccccCccc
Q 009069 365 AIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSN-IKEIAGGQLTKWPERLNAIPPRVNRGAVD 443 (544)
Q Consensus 365 aIwqKP~~~~~c~~~~~~~~~p~~C~~~~~d~~wy~~l~~Ci~~~p~~~~-~~~~~~~~~~~~p~r~~~~p~~~~~~~~~ 443 (544)
-++|+-.-+-|-.. -.+.-|+-+-=...+|.+ +|.... .+|+.|..+.+|=+||
T Consensus 160 --~r~~v~s~a~Yy~l---La~~~~rvDiW~T~Y~h~-------l~~a~aIvdWvkgTgLrP~L~~L------------- 214 (257)
T COG4106 160 --TRAPLPSPAAYYEL---LAPLACRVDIWHTTYYHQ-------LPGADAIVDWVKGTGLRPYLDRL------------- 214 (257)
T ss_pred --ccCCCCCHHHHHHH---hCcccceeeeeeeecccc-------CCCccchhhheeccccceecccc-------------
Confidence 36666433333222 112234422223334444 343333 4678887777776666
Q ss_pred CcchHhhHHhhHHHHHHHHHHHhhhh
Q 009069 444 GVTAEMFREDTALWKKRVTYYKSVDY 469 (544)
Q Consensus 444 ~~~~~~~~~d~~~w~~~v~~y~~~~~ 469 (544)
|.+.|+.-+..|...+.
T Consensus 215 ---------~e~~~~~FL~~Y~~~l~ 231 (257)
T COG4106 215 ---------DEEERQRFLDRYLALLA 231 (257)
T ss_pred ---------CHHHHHHHHHHHHHHHH
Confidence 33456666677776554
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-11 Score=122.03 Aligned_cols=91 Identities=23% Similarity=0.393 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~ 291 (544)
..+|||+|||+|.++..|++. .++++|+ ++.+++.|.++..++.+.++|...+|+++++||+|++..+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~-----s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDI-----SKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECC-----CHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC
Confidence 347999999999999988764 2455555 4555666666666788889999999999999999998653
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
- ..+.|+.|+|||||+|++..+.
T Consensus 161 ~--------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 P--------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred C--------CCHHHHHhhccCCCEEEEEeCC
Confidence 1 2468999999999999999764
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-11 Score=113.73 Aligned_cols=109 Identities=20% Similarity=0.330 Sum_probs=82.0
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDl 285 (544)
+.+.++... ..++||+|||.|..+.+|+++| |+++|+++..+.. ..+.|.+.++++...+.|.....++ +.||+
T Consensus 22 v~~a~~~~~--~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 22 VLEAVPLLK--PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHCTTS---SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHhhcC--CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCE
Confidence 444444333 3379999999999999999996 6778887766644 3467778889999898898777765 68999
Q ss_pred EEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 286 AHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 286 V~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|++..+++++..+. ..++..+...++|||++++..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 99988887776644 678999999999999999964
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-11 Score=114.67 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=80.6
Q ss_pred EEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE-EEEeccccCC-CCCCCeeEEEeccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPAL-IGVMASIRLP-YPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~-~~v~d~~~LP-fpd~sFDlV~~~~~l~h~ 295 (544)
.||+||||||..-.++.-. .|+.+|-++.|.+-+...++..+...+. |++++.+.+| ++++++|+|+|..++ .-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL-CS 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL-CS 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE-ec
Confidence 4899999999877666532 5677777776665555555555555555 8899999999 899999999999999 56
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+++.+.|.|+.|+|||||.+++..+
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 66789999999999999999999865
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=113.35 Aligned_cols=98 Identities=19% Similarity=0.291 Sum_probs=74.7
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
+|||||||+|.++..+++. .++++|+++.++..+.... .+.+. .+.+...|....+++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 6999999999999998875 3667777665554333322 23333 357777777666665 58999999999977
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.+ ...+|.++.++|||||++++...
T Consensus 80 ~~~-~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IKD-KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCC-HHHHHHHHHHHcCCCCEEEEEEc
Confidence 754 78999999999999999999875
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=113.69 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-ccCC--CCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS-IRLP--YPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~-~~LP--fpd~sFDlV~~~~~ 291 (544)
..+|||+|||+|.++..|++. .++++|+++.++..+..+.......++.+.++|+ ..++ +++++||+|++++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 458999999999999988764 5889999887776555444332223578888888 7766 77889999998765
Q ss_pred ccccccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. +|... ...+++++.++|||||.|++..+
T Consensus 121 ~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 121 D-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred C-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 4 44321 26799999999999999999865
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=112.44 Aligned_cols=94 Identities=18% Similarity=0.132 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
..+|||||||+|.++..|++. .++++|+++ .+++.|+++...+.+.+++... |+++++||+|+++.+++|
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~-----~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINE-----YAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhh
Confidence 347999999999999998775 356666654 4555555544456677777776 889999999999999998
Q ss_pred cccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 295 WGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.++. ..+++++.|++ ++++++..
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 86433 78999999998 56777765
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=113.07 Aligned_cols=102 Identities=18% Similarity=0.081 Sum_probs=75.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHH------------HcCCCeEEEEeccccCCCC-CCCe
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFAL------------ERGVPALIGVMASIRLPYP-SRAF 283 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~------------ergv~~~~~v~d~~~LPfp-d~sF 283 (544)
+.+|||+|||.|..+.+|+++| |+++|+|+..+..++.+... .++..+.+.++|...++.. .+.|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 3489999999999999999985 67777776655432211100 0233577788888777643 4579
Q ss_pred eEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 284 DMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|.|+...+++|++.+. ..++..+.++|||||++++.+
T Consensus 115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 9999999998887655 679999999999999876663
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-10 Score=115.35 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=82.3
Q ss_pred CCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--e
Q 009069 192 GGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--A 266 (544)
Q Consensus 192 g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~ 266 (544)
..+..|+.|.........+.+......+.+|||+|||+|.++..+++. .++++|+++.++..++.+.. .+++. +
T Consensus 133 dpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~-~n~~~~~~ 211 (288)
T TIGR00406 133 DPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAE-LNQVSDRL 211 (288)
T ss_pred CCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-HcCCCcce
Confidence 344556666665555555554422223458999999999998888765 47889998877765554433 34443 2
Q ss_pred EEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 267 ~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+...+ ..+..+++||+|+++....+ ...++.++.++|||||+|++++.
T Consensus 212 ~~~~~~--~~~~~~~~fDlVvan~~~~~----l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 212 QVKLIY--LEQPIEGKADVIVANILAEV----IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EEEecc--cccccCCCceEEEEecCHHH----HHHHHHHHHHHcCCCcEEEEEeC
Confidence 233222 23445678999999764421 25789999999999999999975
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-10 Score=117.25 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=98.0
Q ss_pred CCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE
Q 009069 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPAL 267 (544)
Q Consensus 191 ~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~ 267 (544)
...|..|+.|.....+...+++......+.+|||+|||+|.++...++. .|.++|++|..+..+. +.+..+++...
T Consensus 134 idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~ 212 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDR 212 (295)
T ss_dssp ESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTC
T ss_pred ECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCee
Confidence 3456778999888888877777644444569999999999888777765 4889999997775444 44556676555
Q ss_pred EEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHH
Q 009069 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIE 347 (544)
Q Consensus 268 ~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie 347 (544)
+.+.. ........||+|+++..... ...++..+.++|+|||+|++|+-- ....+.+.
T Consensus 213 ~~v~~--~~~~~~~~~dlvvANI~~~v----L~~l~~~~~~~l~~~G~lIlSGIl-----------------~~~~~~v~ 269 (295)
T PF06325_consen 213 IEVSL--SEDLVEGKFDLVVANILADV----LLELAPDIASLLKPGGYLILSGIL-----------------EEQEDEVI 269 (295)
T ss_dssp EEESC--TSCTCCS-EEEEEEES-HHH----HHHHHHHCHHHEEEEEEEEEEEEE-----------------GGGHHHHH
T ss_pred EEEEE--ecccccccCCEEEECCCHHH----HHHHHHHHHHhhCCCCEEEEcccc-----------------HHHHHHHH
Confidence 44332 22334589999999875421 257888899999999999999751 11233455
Q ss_pred HHHHhhcceeeee
Q 009069 348 TIARSLCWKKLIQ 360 (544)
Q Consensus 348 ~la~~l~w~~v~~ 360 (544)
+.+++ +|+.+..
T Consensus 270 ~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 270 EAYKQ-GFELVEE 281 (295)
T ss_dssp HHHHT-TEEEEEE
T ss_pred HHHHC-CCEEEEE
Confidence 66666 8876653
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-10 Score=112.52 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEec
Q 009069 199 RGADAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMA 272 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d 272 (544)
...-..+.++.+.+. +.. +.+|||||||+|.++..++++ .|+++|+++. . ...++.+.++|
T Consensus 33 ~r~~~kl~~~~~~~~~~~~--~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~----------~~~~v~~i~~D 99 (209)
T PRK11188 33 SRAWFKLDEIQQSDKLFKP--GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-D----------PIVGVDFLQGD 99 (209)
T ss_pred hhHHHhhHHHHHHhccCCC--CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-c----------CCCCcEEEecC
Confidence 333334445555554 343 348999999999999988875 3788888661 1 11246777888
Q ss_pred cccCC--------CCCCCeeEEEecccccccccCh-----------HHHHHHHHHcccCCcEEEEEeC
Q 009069 273 SIRLP--------YPSRAFDMAHCSRCLIPWGQYD-----------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 273 ~~~LP--------fpd~sFDlV~~~~~l~h~~~d~-----------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+ +.+++||+|+|..+. ++..++ ..+|.++.++|||||.|++...
T Consensus 100 ~~~~~~~~~i~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 100 FRDELVLKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCChHHHHHHHHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 77643 667899999998766 333222 3589999999999999999753
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-10 Score=128.76 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=80.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--fpd~sFDlV~~~~~l 292 (544)
+.+|||+|||+|.++..+++. .++++|+++.++..++.+. ...+.+..+.++|...+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 348999999999998888764 6788888887776555432 233456677778888887 788999999999999
Q ss_pred cccc------------cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWG------------QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~------------~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|++. .+...+|+++.|+|||||.+++...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7763 1337899999999999999999853
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.8e-10 Score=115.16 Aligned_cols=144 Identities=20% Similarity=0.268 Sum_probs=94.2
Q ss_pred CCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEE
Q 009069 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGV 270 (544)
Q Consensus 194 g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v 270 (544)
|.-|+.|.........+.+......+++|||+|||+|.++...++. .+.++|++|..+..++ +.++.++++.....
T Consensus 138 GlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~ 216 (300)
T COG2264 138 GLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQA 216 (300)
T ss_pred ccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhc
Confidence 4445666655555555555433335669999999999998888876 4789999887775444 45556676631111
Q ss_pred eccccCCCCC-CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHH
Q 009069 271 MASIRLPYPS-RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETI 349 (544)
Q Consensus 271 ~d~~~LPfpd-~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~l 349 (544)
.....+..+. +.||+|+++... +. ...+..++.+.|||||++++|+- +.+..+.+.+.
T Consensus 217 ~~~~~~~~~~~~~~DvIVANILA-~v---l~~La~~~~~~lkpgg~lIlSGI-----------------l~~q~~~V~~a 275 (300)
T COG2264 217 KGFLLLEVPENGPFDVIVANILA-EV---LVELAPDIKRLLKPGGRLILSGI-----------------LEDQAESVAEA 275 (300)
T ss_pred ccccchhhcccCcccEEEehhhH-HH---HHHHHHHHHHHcCCCceEEEEee-----------------hHhHHHHHHHH
Confidence 1122222333 589999998743 21 15899999999999999999974 11123345566
Q ss_pred HHhhcceeee
Q 009069 350 ARSLCWKKLI 359 (544)
Q Consensus 350 a~~l~w~~v~ 359 (544)
+++.+|+.+.
T Consensus 276 ~~~~gf~v~~ 285 (300)
T COG2264 276 YEQAGFEVVE 285 (300)
T ss_pred HHhCCCeEeE
Confidence 6667787665
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=121.60 Aligned_cols=110 Identities=27% Similarity=0.433 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHc--CCCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER--GVPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--V~~vdisp~dls~a~v~~A~er--gv~~~~~v~d~~~L 276 (544)
...++.+.+.+.+.++. +|||||||+|.++..++++ + |+++|+++ .+++.+.++ +..+.+...|...+
T Consensus 153 ~~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~giDlS~-----~~l~~A~~~~~~l~v~~~~~D~~~l 225 (383)
T PRK11705 153 EAKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVGVTISA-----EQQKLAQERCAGLPVEIRLQDYRDL 225 (383)
T ss_pred HHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhccCeEEEEECchhhc
Confidence 33445565666555544 8999999999999999875 4 55566655 444444443 34456666665544
Q ss_pred CCCCCCeeEEEecccccccccC-hHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||+|++..+++|.... ...++.++.|+|||||++++...
T Consensus 226 ---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 ---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred ---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 4789999999999887543 37899999999999999999753
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.6e-10 Score=97.91 Aligned_cols=109 Identities=17% Similarity=0.037 Sum_probs=75.6
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LPYPS 280 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-LPfpd 280 (544)
..+.+.+....+ .+|||+|||+|.++..++++ .++++|+++..+..+..........++.+...+... ++...
T Consensus 9 ~~~~~~~~~~~~--~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 9 ALTLSKLRLRPG--DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 344555544443 38999999999999999875 478888877666555543333222246666666543 33444
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
++||.|++.....+ ...+++++.++|||||.|++..
T Consensus 87 ~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGGL----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcchh----HHHHHHHHHHHcCCCCEEEEEe
Confidence 68999999765422 3589999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-09 Score=105.24 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=83.1
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEeccccCCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPY 278 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~LPf 278 (544)
...+...+...+ ..+|||+|||+|.++..+++. .++++|+++..+..++..+.... ..++.+...|...+++
T Consensus 40 ~~~~~~~~~~~~--~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 40 RRKTIKWLGVRP--GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHHHHHhCCCC--CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 334444444433 348999999999998888764 46778887765554443332211 2356777888888888
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++||+|+++.+++++. +...++.++.++|+|||.+++.+.
T Consensus 118 ~~~~~D~I~~~~~l~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCccEEEEecccccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 888999999999886665 478999999999999999998753
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.9e-10 Score=110.99 Aligned_cols=135 Identities=19% Similarity=0.154 Sum_probs=84.5
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc
Q 009069 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS 273 (544)
Q Consensus 197 F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~ 273 (544)
|+.|.........+.+......+.+|||+|||+|.++..+++. .++++|+++.++..+..+. ..+++...+.
T Consensus 98 fgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~-~~~~~~~~~~---- 172 (250)
T PRK00517 98 FGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA-ELNGVELNVY---- 172 (250)
T ss_pred cCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCceEE----
Confidence 4444444444444444322233458999999999988887765 3778888887765554433 3344421111
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhh
Q 009069 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSL 353 (544)
Q Consensus 274 ~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l 353 (544)
++..+.+||+|+++.... ....++.++.++|||||+|++++... ...+.+...++..
T Consensus 173 --~~~~~~~fD~Vvani~~~----~~~~l~~~~~~~LkpgG~lilsgi~~-----------------~~~~~v~~~l~~~ 229 (250)
T PRK00517 173 --LPQGDLKADVIVANILAN----PLLELAPDLARLLKPGGRLILSGILE-----------------EQADEVLEAYEEA 229 (250)
T ss_pred --EccCCCCcCEEEEcCcHH----HHHHHHHHHHHhcCCCcEEEEEECcH-----------------hhHHHHHHHHHHC
Confidence 122223799999976431 12578999999999999999996521 1123456677778
Q ss_pred cceeee
Q 009069 354 CWKKLI 359 (544)
Q Consensus 354 ~w~~v~ 359 (544)
+|+.+.
T Consensus 230 Gf~~~~ 235 (250)
T PRK00517 230 GFTLDE 235 (250)
T ss_pred CCEEEE
Confidence 887654
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-10 Score=108.36 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~--V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~ 275 (544)
.+.-...|.+.+.... ..+|||+|||+|.++..++++ . ++++|+++..+..++.. +..+++. +.+...|...
T Consensus 16 ~d~~t~lL~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n-~~~n~~~~v~~~~~d~~~ 92 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKHK--GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRN-AERNGLENVEVVQSDLFE 92 (170)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHH-HHHTTCTTEEEEESSTTT
T ss_pred CCHHHHHHHHHHhhcc--CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-HHhcCccccccccccccc
Confidence 3344445566665443 338999999999999999886 3 88899988766555443 3344555 6666666533
Q ss_pred CCCCCCCeeEEEecccccccccC----hHHHHHHHHHcccCCcEEEEEeC
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.++++||+|+|+.-++.-..+ ...++.++.+.|||||.|++...
T Consensus 93 -~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 93 -ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp -TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 3447899999999866333321 16789999999999999988754
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-10 Score=109.64 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR 275 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~ 275 (544)
+.....+.+.+.++.......+|||+|||+|.++..+++. .++++|+++.++..++.+.. ..+. .+.+.+.|...
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhh
Confidence 3444455566666521223458999999999999999876 46778887766655544333 2332 57788888777
Q ss_pred CCCCCCCeeEEEecccccccccC-hHHHHHHHHHcccCCcEEEEEeCCCCccccc----cCCCc---chhhhHhhhhhHH
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSGPPVNWESHW----KGWNR---TTEDLKSEQNGIE 347 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~----~~w~~---t~e~L~~~~~~ie 347 (544)
++ ++||+|++..+++|++.. ...++.++.+++++|+++.+.. ...+.... ..|.. .........++++
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP-KTAWLAFLKMIGELFPGSSRATSAYLHPMTDLE 191 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC-CchHHHHHHHHHhhCcCcccccceEEecHHHHH
Confidence 65 789999999998887642 3788999999999777666542 11111000 00000 0001111235677
Q ss_pred HHHHhhcceeeeee
Q 009069 348 TIARSLCWKKLIQK 361 (544)
Q Consensus 348 ~la~~l~w~~v~~~ 361 (544)
.+++..+|+.+..+
T Consensus 192 ~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 192 RALGELGWKIVREG 205 (219)
T ss_pred HHHHHcCceeeeee
Confidence 88888888877653
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-10 Score=114.84 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=88.8
Q ss_pred CCceecCCCCCCCcc-cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHH
Q 009069 185 GDRFSFPGGGTMFPR-GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFA 259 (544)
Q Consensus 185 ge~~~F~g~g~~F~~-ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A 259 (544)
+..+.|......|.. ..+.=.+.|.+.++...+. +|||+|||.|.++..|+++ .++.+|++...+..++...+
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH
Confidence 444555444333322 2333334566666544433 7999999999999999986 57888887766655555444
Q ss_pred HHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccChH----HHHHHHHHcccCCcEEEEEeC
Q 009069 260 LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDG----LYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 260 ~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~----~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. +++....+..+....+..+ +||+|+|+.-+|.-..-.. +++.+..+.|++||.|.|+..
T Consensus 204 ~-N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 204 A-NGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred H-cCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 3 4444323333444555555 9999999997754333223 899999999999999999976
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-10 Score=123.46 Aligned_cols=111 Identities=13% Similarity=0.189 Sum_probs=82.5
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc--cCCCCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI--RLPYPSRA 282 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~--~LPfpd~s 282 (544)
.+.+.+.... ..+|||||||+|.++..|++. .++++|+++.++..+.. .......+.+...|.. .+++++++
T Consensus 28 ~il~~l~~~~--~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 28 EILSLLPPYE--GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred HHHhhcCccC--CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCC
Confidence 4445554333 348999999999999999986 57788887766643221 1111235677777764 57788899
Q ss_pred eeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 283 FDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 283 FDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
||+|+|+.+++|+.++. ..++.++.|+|||||++++...
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999999998887543 7899999999999999999764
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-10 Score=118.02 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=80.6
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
-.+.+.+.++... ..+|||+|||+|.++..++++ .++++|+++.++..++.... .+++...+...|... ..
T Consensus 184 gt~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~~--~~ 258 (342)
T PRK09489 184 GSQLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVFS--DI 258 (342)
T ss_pred HHHHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEccccc--cc
Confidence 3334445444322 237999999999999999875 47888998877766654443 445565666555433 23
Q ss_pred CCCeeEEEecccccccccC----hHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++.||+|+|+..+|..... ...++.++.++|||||.|+|+.+
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 6789999999988653321 27899999999999999999975
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-10 Score=113.25 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=85.8
Q ss_pred hcceeeecCCceecCCCCCCCcccHHHHHHHHHHHhcc-cCC----CCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccch
Q 009069 177 NQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL-KDG----SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDT 251 (544)
Q Consensus 177 ~q~w~~~~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l-~~g----~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dl 251 (544)
...||+.+|-+-.++.-+. .......+.+.+..+. .++ .+++|||+|||+|.++..|++.+..++++ |+
T Consensus 46 a~~wwd~~g~~~~Lh~mn~---~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V~GI---D~ 119 (282)
T KOG1270|consen 46 AFTWWDEEGVRHPLHSMNQ---TRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQVTGI---DA 119 (282)
T ss_pred cccccccccchhhhhhccc---hhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCeeEee---cc
Confidence 4568887775444432211 1112222334444322 222 25789999999999999999986555555 44
Q ss_pred HHHHHHHHHHcC---C----C----eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 252 HEAQVQFALERG---V----P----ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 252 s~a~v~~A~erg---v----~----~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
++.+++.|++.. + + +.+...+.+.+ .+.||+|+|+.+++|..+ +..++.-+.+.|||||.++|++
T Consensus 120 s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcsevleHV~d-p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 120 SDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSEVLEHVKD-PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred cHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHHHHHHHhC-HHHHHHHHHHHhCCCCceEeee
Confidence 555555555431 0 1 12222233332 245999999999988875 8999999999999999999986
Q ss_pred C
Q 009069 321 P 321 (544)
Q Consensus 321 p 321 (544)
-
T Consensus 196 i 196 (282)
T KOG1270|consen 196 I 196 (282)
T ss_pred h
Confidence 4
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-09 Score=103.38 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=71.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||+|||+|.++..++.. .++++|+++.++..+.. .+.+.+. ++.+..+|...++ .+++||+|++.. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 458999999999988887643 48888888876654433 3334454 4788888887764 467899999865 32
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+...++..+.++|||||.+++...
T Consensus 120 ----~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 120 ----SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 245788999999999999999854
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.5e-10 Score=113.64 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=75.2
Q ss_pred CCCEEEEeCCCCcH----HHHHHhhC---------CcEEEeCCccchHHHHHHHH---HHcC------------------
Q 009069 218 SIRTAIDTGCGVAS----WGAYLMSR---------NILAVSFAPRDTHEAQVQFA---LERG------------------ 263 (544)
Q Consensus 218 ~~r~VLDIGCGtG~----~a~~La~~---------~V~~vdisp~dls~a~v~~A---~erg------------------ 263 (544)
...+|||+|||+|. ++..|++. .|+++|+++.++..+....- .-++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34589999999994 55555442 47788887766654443210 0001
Q ss_pred ------CCeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 264 ------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 264 ------v~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
-.+.|.+.|....++++++||+|+|..+++|+.+.. ..++.++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 136778888888887889999999999998886422 689999999999999999964
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=106.24 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=81.3
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPf 278 (544)
+.+.+.+.+... .+.+|||+|||+|.++..+++. .++++|+++..+........ ....+.+..+|...+++
T Consensus 27 ~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 27 WRRRAVKLIGVF--KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHHHHhccC--CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC
Confidence 334455554433 3448999999999999988765 46667775544432222221 12346777788888888
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++||+|+++..+++.. +...+++++.++|+|||++++.+.
T Consensus 103 ~~~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 103 EDNSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888999999999886655 478999999999999999998753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=101.89 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=74.2
Q ss_pred CEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
.+|||+|||+|.++..+++++ ++++|+++.++..+..+.. ..+..+.+..+|....+ .++||+|+++..+++..+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 379999999999999998873 6788888776655544443 34456667777765543 458999999987765543
Q ss_pred C--------------------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 298 Y--------------------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 298 d--------------------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ...++.++.|+|||||.+++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 1 14679999999999999999865
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=105.66 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=76.0
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC---CCCCCeeEEEeccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP---YPSRAFDMAHCSRC 291 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP---fpd~sFDlV~~~~~ 291 (544)
.+|||||||+|.++..++++ .++++|+++.++..+..+.. ..++ ++.+..+|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~-~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKAN-KLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH-HhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 47999999999999999876 68889998776655554433 3333 5788888876654 55679999998765
Q ss_pred ccccccCh--------HHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. +|+... ..++.++.|+|||||.|++...
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 4 554422 4789999999999999999864
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-09 Score=101.50 Aligned_cols=133 Identities=13% Similarity=-0.024 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~ 275 (544)
.+.....+.+.+.... +.+|||+|||+|.++..++++ .++++|+++.++..++..... .+. .+.+..++..
T Consensus 16 ~~~~r~~~~~~l~~~~--~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~-~~~~~i~~~~~d~~- 91 (187)
T PRK08287 16 KEEVRALALSKLELHR--AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-FGCGNIDIIPGEAP- 91 (187)
T ss_pred hHHHHHHHHHhcCCCC--CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCeEEEecCch-
Confidence 3333334445555444 348999999999999988764 578889988766555443332 333 4566655543
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcc
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 355 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w 355 (544)
.++ .++||+|++..... ....++.++.++|+|||+|++..... ...+++..+.++.+|
T Consensus 92 ~~~-~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 92 IEL-PGKADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTFILL-----------------ENLHSALAHLEKCGV 149 (187)
T ss_pred hhc-CcCCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEEecH-----------------hhHHHHHHHHHHCCC
Confidence 333 35799999876542 23578999999999999999974311 112345567777888
Q ss_pred eeee
Q 009069 356 KKLI 359 (544)
Q Consensus 356 ~~v~ 359 (544)
+.+.
T Consensus 150 ~~~~ 153 (187)
T PRK08287 150 SELD 153 (187)
T ss_pred Ccce
Confidence 6554
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-09 Score=115.41 Aligned_cols=112 Identities=12% Similarity=0.120 Sum_probs=77.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEeccccCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV----PALIGVMASIRLP 277 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv----~~~~~v~d~~~LP 277 (544)
+.+.+.++...+ .+|||+|||+|.++..++++ .++++|+++.++..++..... ++. .+.+...|... .
T Consensus 218 rllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l~-~ 293 (378)
T PRK15001 218 RFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALS-G 293 (378)
T ss_pred HHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEccccc-c
Confidence 334555543322 37999999999999999875 588889987777655544432 222 34555555432 2
Q ss_pred CCCCCeeEEEecccccccc--cC--hHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCSRCLIPWG--QY--DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~--~d--~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++.+||+|+|+..+|.-. .+ ...++.++.++|||||.|+++..
T Consensus 294 ~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 294 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 3456899999998775432 11 15789999999999999999964
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=107.02 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=72.2
Q ss_pred CEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcC----------------CCeEEEEeccccCCCC-C
Q 009069 220 RTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG----------------VPALIGVMASIRLPYP-S 280 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~erg----------------v~~~~~v~d~~~LPfp-d 280 (544)
.+|||+|||.|..+..|+++| |+++|+++..+..++ .+++ ..+.+.++|...++.. .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 489999999999999999985 666666665554322 2332 3466777887777533 2
Q ss_pred CCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEE
Q 009069 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvi 318 (544)
..||+|+...+++|++.+. ..++..+.++|||||.+++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 5899999999998887655 7899999999999997555
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.5e-10 Score=109.13 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=69.1
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAH 287 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LPfpd~sFDlV~ 287 (544)
...+|||+|||+|.++..|++. .++++|+++.++. .|.++. .++.+.+.+...+++++++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~-----~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVA-----FARANPRRPGVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHH-----HHHhccccCCCeEEEEecccccccCCCccEEE
Confidence 3458999999999988887641 4677777665554 443331 234555566667777788999999
Q ss_pred ecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 288 CSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 288 ~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|+.++||+.+.. ..+++++.|++| |.+++..
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 999998887632 579999999998 5555543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-09 Score=110.80 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHH-----cCCCeEEEEecc
Q 009069 202 DAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE-----RGVPALIGVMAS 273 (544)
Q Consensus 202 ~~~i~~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~e-----rgv~~~~~v~d~ 273 (544)
...++.+.+++... ...+.+|||+|||+|.++..|++++ ++++|+++.++..++.+.... ....+.+.+.|.
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 34455566666432 1234589999999999999999874 788888887776555443221 022456666665
Q ss_pred ccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccc----c-CCCcch---hhhHhhhh
Q 009069 274 IRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHW----K-GWNRTT---EDLKSEQN 344 (544)
Q Consensus 274 ~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~----~-~w~~t~---e~L~~~~~ 344 (544)
..+ +++||+|+|..+++|++++. ..++..+.+ +.+||. +++..+..+.... . .|.... .......+
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~e 281 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEA 281 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHH
Confidence 443 57899999999998887644 345666654 455555 4454433332110 0 011000 01111245
Q ss_pred hHHHHHHhhcceeee
Q 009069 345 GIETIARSLCWKKLI 359 (544)
Q Consensus 345 ~ie~la~~l~w~~v~ 359 (544)
+++.+.+..+|+...
T Consensus 282 el~~lL~~AGf~v~~ 296 (315)
T PLN02585 282 DVERALKKAGWKVAR 296 (315)
T ss_pred HHHHHHHHCCCEEEE
Confidence 677888888888654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=105.07 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=76.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L 276 (544)
....+.+.+....+. +|||+|||+|..+..|++. .++++|+++.++..++.++. ..+. .+.+..+|....
T Consensus 60 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~-~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 60 MVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE-RLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEECCcccC
Confidence 445566666555444 8999999999999888753 47888888766654443333 3343 367777787665
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.....+||+|++..++.+.+ .++.++|+|||.|++..
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccCCCccEEEEccCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 44567899999988775433 47889999999999864
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=105.07 Aligned_cols=117 Identities=19% Similarity=0.239 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEec-cccCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMA-SIRLPY 278 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d-~~~LPf 278 (544)
.+..++..+++.+..+..+-|||||||+|..+..|.+.+ ++++|||+.|++.++. +.+...+..+| -+-+||
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-----~e~egdlil~DMG~Glpf 108 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-----RELEGDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-----hhhhcCeeeeecCCCCCC
Confidence 334556667777776667789999999999999998875 5677777777765553 22222233333 378999
Q ss_pred CCCCeeEEEecccccccccC-------h----HHHHHHHHHcccCCcEEEEEeCCCC
Q 009069 279 PSRAFDMAHCSRCLIPWGQY-------D----GLYLIEVDRVLRPGGYWILSGPPVN 324 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d-------~----~~~L~Ei~RVLKPGG~Lvis~pp~~ 324 (544)
.+++||.|++..++ +|.-+ + ..|+..++.+|++|+..++.-.|.+
T Consensus 109 rpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 109 RPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 99999999997776 55421 2 3578889999999999999976554
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=105.89 Aligned_cols=102 Identities=16% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-CCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-YPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP-fpd~sFDlV~~~~~l~h~ 295 (544)
..+|||||||+|.++..+.+.+ ++++|+++..+..+...+. ..+..+.+...+....+ ..++.||+|++..+++|.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHAL-ESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHH-HcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 4589999999999999988774 6666776655443333222 23445566666665554 345789999999988766
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
. ++..+|.++.++|+|||.++++.+.
T Consensus 128 ~-~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 128 P-DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred C-CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 5 4788999999999999999998653
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=101.77 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~ 275 (544)
....++.+.+.+.. ...+|||+|||+|.++..+++. .++++|+++..+..+.... ...+. ++.+..+|...
T Consensus 73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA-ARLGLDNVTFLQSDWFE 148 (251)
T ss_pred hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCeEEEEECchhc
Confidence 44555555555432 2347999999999999999875 5788888777665444333 33444 36777777654
Q ss_pred CCCCCCCeeEEEecccccccc------cC-------------------hHHHHHHHHHcccCCcEEEEEeCCCCcccccc
Q 009069 276 LPYPSRAFDMAHCSRCLIPWG------QY-------------------DGLYLIEVDRVLRPGGYWILSGPPVNWESHWK 330 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~------~d-------------------~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~ 330 (544)
++++++||+|+++.-++... .+ ...++.++.++|+|||.+++....
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-------- 219 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-------- 219 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc--------
Confidence 55678999999976443211 00 025788999999999999997531
Q ss_pred CCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 331 GWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 331 ~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
.. .+.++++.++.+|+.+..
T Consensus 220 ---~~-------~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 220 ---DQ-------GEAVRALFEAAGFADVET 239 (251)
T ss_pred ---cH-------HHHHHHHHHhCCCCceEE
Confidence 11 123556667777765543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=104.58 Aligned_cols=105 Identities=23% Similarity=0.287 Sum_probs=72.6
Q ss_pred ccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccc
Q 009069 214 LKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~ 291 (544)
+..+..+++||+|||.|.++..|+.+ .++++|+++..+..+..+.+ ....+.+.+++.... .|+++||+|+++.+
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GLPHVEWIQADVPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCC-CCCCCeeEEEEehH
Confidence 34555668999999999999999998 68888886655443333222 123578888776553 57899999999999
Q ss_pred ccccccC--hHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQY--DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d--~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++.+.+. ...++..+.+.|+|||.||+...
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9777642 26789999999999999999753
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-09 Score=112.68 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=79.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccC--CCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL--PYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~L--Pfpd~sFDlV~~~~~ 291 (544)
...+||||||+|.++..++++ .++++|+++.++..+..+.. ..++ ++.+..+|+..+ .+++++||.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~-~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIE-LLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH-HcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 448999999999999999975 68899998877766655443 4444 677788887654 578999999998765
Q ss_pred ccccccCh------HHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYD------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. +|+... ..++.++.|+|+|||.+.+.+.
T Consensus 202 d-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 V-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred C-CccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 4 665433 4799999999999999999753
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=101.97 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=84.4
Q ss_pred HhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC----CCCCCC
Q 009069 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL----PYPSRA 282 (544)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L----Pfpd~s 282 (544)
.+.+.++. +|||+|||+|.++..|++. .|.++|+++.++.... +.+.++ .++.+..+|.... ++ .++
T Consensus 67 ~l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l-~~~ 141 (226)
T PRK04266 67 NFPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHV-VEK 141 (226)
T ss_pred hCCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhc-ccc
Confidence 45555554 8999999999999999885 4889999887775433 344433 3456666676431 22 356
Q ss_pred eeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 283 FDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
||+|++.... +.....++.++.|+|||||.|+++.+... -.|....... .+.....++..+++.+..
T Consensus 142 ~D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~~~~-----~d~~~~~~~~---~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 142 VDVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIKARS-----IDVTKDPKEI---FKEEIRKLEEGGFEILEV 208 (226)
T ss_pred CCEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEeccc-----ccCcCCHHHH---HHHHHHHHHHcCCeEEEE
Confidence 9999864321 11124578999999999999999754211 0111222111 223335667778876654
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=100.27 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=76.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC-CCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYP-SRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfp-d~sFDlV~~~~~l~h 294 (544)
..+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+. .+.+...+....+.. .++||+|++..++++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 458999999999999988775 46677776665544443332 2344 467777777666644 378999999998866
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. ++..++.++.++|+|||.++++..
T Consensus 125 ~~-~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 125 VP-DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred CC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 65 578999999999999999998864
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.8e-09 Score=106.52 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=77.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYP 279 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfp 279 (544)
+.+.+.+.... ..+|||||||+|.++..++++ .++++|+ +..+..+ .+.+.+.+. .+.+..+|....+++
T Consensus 139 ~~l~~~~~~~~--~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a-~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 139 QLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLV-NENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHcCCCC--CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHH-HHHHHhCCccceEEEEecCccCCCCC
Confidence 33444444443 348999999999999999876 3556665 3333222 223334444 367777887766665
Q ss_pred CCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ +|+|+++.++|+|.++. ..+|+++.++|||||.|++.+.
T Consensus 215 ~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred C--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4 69999999998887644 6899999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-09 Score=103.58 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR 275 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~ 275 (544)
......+.+.+.+..+. +|||||||+|.++..|++. .++++|+++.....++..+. ..+. ++.+..+|...
T Consensus 62 p~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 62 IHMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVIVGDGTL 138 (212)
T ss_pred HHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCccc
Confidence 33445666666666554 8999999999999888764 57888887766655444333 3343 57888888766
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
...+.+.||+|++..+..+. ...+.+.|||||.|++..
T Consensus 139 ~~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 65567889999998765332 346777899999999864
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.9e-09 Score=107.42 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=82.6
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCc-EEEeCCccchHHHHHHHHHHc-CC--CeEEEEeccccCCCCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER-GV--PALIGVMASIRLPYPS 280 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V-~~vdisp~dls~a~v~~A~er-gv--~~~~~v~d~~~LPfpd 280 (544)
.+++...++ +-.+++|||||||.|.++.+|+.+|. .+++++|....-.|-+++.+- +. .+.+.-...+.+|. .
T Consensus 104 W~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 104 WDRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 344554442 33466999999999999999999864 456776666655555554432 22 23333346888887 7
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
++||+|+|..+|.|..+ |...|.++...|+|||.|++.
T Consensus 181 ~~FDtVF~MGVLYHrr~-Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRS-PLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred CCcCEEEEeeehhccCC-HHHHHHHHHHhhCCCCEEEEE
Confidence 89999999999988775 899999999999999999986
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=107.24 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=80.3
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCe
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAF 283 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sF 283 (544)
.+.++....++ .+|||+|||+|.++..++.. .+.++|+++.++..+..++.. .+. .+.+...|...+|+++++|
T Consensus 173 ~~~~l~~~~~g--~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~-~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 173 AMVNLARVTEG--DRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEH-YGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHhCCCCc--CEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHH-hCCCCCeEEecchhcCCcccCCC
Confidence 34444444444 48999999999988776654 577888888777655544432 333 3577788999999888999
Q ss_pred eEEEecccccc---c----c-cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 284 DMAHCSRCLIP---W----G-QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 284 DlV~~~~~l~h---~----~-~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|+++.-+.. . . +....++.++.|+|||||++++..+
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 99999643211 0 1 1126899999999999999999876
|
This family is found exclusively in the Archaea. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.1e-09 Score=102.35 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcc-cCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 009069 202 DAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L 276 (544)
....+.+.+.+.. ......+|||||||+|.++..|++. .++++|+++.++..++..+.. .+. .+.+..+| +
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d---~ 121 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD---L 121 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---c
Confidence 3344455555543 1223458999999999999999876 477788877766655544332 233 45666665 4
Q ss_pred CCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEE
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYW 316 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~L 316 (544)
+..+++||+|++..+++|+.... ..+++++.+.+++++.+
T Consensus 122 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 122 ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 45568899999999998877533 67888888877544443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.3e-09 Score=101.12 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=76.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--C---cEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N---ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~---V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP 277 (544)
....+.+.+.+..+. +|||||||+|.++..|++. . ++++|+++..+..+...+ .+.+. ++.+..+|.....
T Consensus 65 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~-~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRL-RKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCeEEEECCcccCC
Confidence 445566666665544 8999999999999998875 2 788888876665444333 33444 5777777776554
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.....||+|++.....+ +...+.+.|+|||+|++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 44568999998765432 3456788999999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=98.87 Aligned_cols=130 Identities=23% Similarity=0.234 Sum_probs=81.8
Q ss_pred CEEEEeCCCCcHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-C-CCCCCCeeEEEecccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-L-PYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-L-Pfpd~sFDlV~~~~~l~h 294 (544)
.+|||+|||+|.++..+++. + ++++|+++ .+++.+.++++ .+..+|... + ++++++||+|+|+.+++|
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~-----~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~ 87 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ-----DGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQA 87 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH-----HHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHc
Confidence 38999999999999988764 3 45566644 44455555553 455566644 4 477889999999999977
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeCCCC-cc-------c--------cccCCCcchhhhHhhhhhHHHHHHhhcceee
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGPPVN-WE-------S--------HWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~-w~-------~--------~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v 358 (544)
.. ++..+++++.|++++ .+++.|... |. . ....|......-....+++.++.+..+++.+
T Consensus 88 ~~-d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 88 TR-NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred Cc-CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEE
Confidence 65 588999999887664 444433211 10 0 0001222111112235667788888888776
Q ss_pred ee
Q 009069 359 IQ 360 (544)
Q Consensus 359 ~~ 360 (544)
..
T Consensus 164 ~~ 165 (194)
T TIGR02081 164 DR 165 (194)
T ss_pred EE
Confidence 54
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=99.88 Aligned_cols=100 Identities=21% Similarity=0.224 Sum_probs=70.9
Q ss_pred CEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
.+|||+|||+|.++..+++. .++++|+++.++..++.+ +...+..+.+...|... .+++++||+|+++.-+++-.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n-~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLN-ALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCC
Confidence 48999999999999988875 467888887666544433 33345566676666644 34677999999986443221
Q ss_pred cC--------------------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 297 QY--------------------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 297 ~d--------------------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. ...++.++.++|||||.+++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 10 14578889999999999998754
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-09 Score=105.41 Aligned_cols=144 Identities=18% Similarity=0.259 Sum_probs=98.9
Q ss_pred HHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc-cCC-CCCCC
Q 009069 208 IGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI-RLP-YPSRA 282 (544)
Q Consensus 208 L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~-~LP-fpd~s 282 (544)
+.+++. ...+.-+++||+|||||..+..|..+ .++++|| +++|++.|.++++--.+.+++.. -++ ..+..
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDi-----S~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDI-----SENMLAKAHEKGLYDTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCch-----hHHHHHHHHhccchHHHHHHHHHHHhhhccCCc
Confidence 344443 23344679999999999999999876 5555555 67777888888876566666544 233 45678
Q ss_pred eeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC--CCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP--PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 283 FDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p--p~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
||+|.+..++ .+..+.+.++.-+...|+|||.|.+|.- +..|... ..+...+......+....+..+++.+..
T Consensus 189 ~DLi~AaDVl-~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~----l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 189 FDLIVAADVL-PYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFV----LGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred ccchhhhhHH-HhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCee----cchhhhhccchHHHHHHHHhcCceEEEe
Confidence 9999999999 4444579999999999999999999852 2222111 1122222233456778888888887764
Q ss_pred e
Q 009069 361 K 361 (544)
Q Consensus 361 ~ 361 (544)
.
T Consensus 264 ~ 264 (287)
T COG4976 264 E 264 (287)
T ss_pred e
Confidence 3
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-08 Score=93.53 Aligned_cols=101 Identities=18% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVP---ALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~---~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||+|||+|.++..++++ .++++|+++.++..++.+. ...+.. +.+...|... ++.+++||+|+++..+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 348999999999999999876 6777888776665444333 233332 5666666544 44566899999876543
Q ss_pred cccc--------------------ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQ--------------------YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~--------------------d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..+ ....+++++.++|||||.+++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 3110 014579999999999999998765
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-09 Score=92.66 Aligned_cols=101 Identities=23% Similarity=0.381 Sum_probs=71.2
Q ss_pred CEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCC--CCCCCeeEEEecccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLP--YPSRAFDMAHCSRCL 292 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LP--fpd~sFDlV~~~~~l 292 (544)
.+|||+|||+|.++..+++. .++++|+++..+.-+...+.. .+ .++.+.++|..... +++++||+|+++.-+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 47999999999999998876 467777766544333332222 22 25788888877765 788999999998866
Q ss_pred cccccC-------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d-------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...... ...+++++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 543211 15789999999999999998754
|
... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-08 Score=99.55 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=79.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHH------------HHHcCCCeEEEEeccccCCCC---CC
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQF------------ALERGVPALIGVMASIRLPYP---SR 281 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~------------A~ergv~~~~~v~d~~~LPfp---d~ 281 (544)
+.+||+.|||.|..+.+|+++| |+++|+|+..+.....+. ...++..+.+.++|...++.. -+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 3489999999999999999985 666677665554332210 012345788899998888642 26
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.||+|+-..++++++++. ..+.+.+.++|+|||.+++...
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 899999999999998766 7899999999999999988753
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=102.83 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=70.5
Q ss_pred ccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc---CCCCCCCeeE
Q 009069 214 LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR---LPYPSRAFDM 285 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~---LPfpd~sFDl 285 (544)
+.++ .+|||+|||+|.++..+++. .|.++|+++.+. +.+++.+.++ .++.+.+.|+.. +.....+||+
T Consensus 130 IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 130 IKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred cCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCE
Confidence 4444 48999999999999999886 389999986543 3455555544 355666667542 2223458999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
|++..+ .+++...++.++.++|||||+|+|.
T Consensus 206 V~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVA---QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCC---CcchHHHHHHHHHHhccCCCEEEEE
Confidence 999764 1333356778999999999999996
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=104.85 Aligned_cols=102 Identities=9% Similarity=0.173 Sum_probs=75.6
Q ss_pred CCCEEEEeCCCCcHHHHHHhh--C----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEec
Q 009069 218 SIRTAIDTGCGVASWGAYLMS--R----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCS 289 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~--~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~ 289 (544)
..++|||||||.|.++..++. . .++++|+++..+..+...+....++ .+.|..+|+...+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 345899999998855444332 2 3788898887666555444332343 4888888877654345789999998
Q ss_pred ccccccc-cChHHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWG-QYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~-~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
++++|. .+...++..+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 898885 556999999999999999999985
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=83.75 Aligned_cols=99 Identities=23% Similarity=0.283 Sum_probs=70.6
Q ss_pred EEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCC-CCCCeeEEEecccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY-PSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPf-pd~sFDlV~~~~~l~h~~ 296 (544)
++||+|||.|.++..+++. .+.++|+++......+............+...+...... ..++||+|++..+++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999999988872 577777766444333211111112346666666655543 567899999999886644
Q ss_pred cChHHHHHHHHHcccCCcEEEEE
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
.....++..+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 45689999999999999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=102.65 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEecccc-CCCCCC----CeeEEE
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIR-LPYPSR----AFDMAH 287 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~-LPfpd~----sFDlV~ 287 (544)
+.+|||+|||+|..+..|+++ .++++|+++.++..++.++.... ++++...++|... ++++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 348999999999999888765 47888888877776665544322 3456667778654 344433 234455
Q ss_pred ecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+...+.++..+. ..+|+++.++|+|||.|+|...
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 555665555422 6799999999999999999754
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.4e-08 Score=96.69 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP 277 (544)
+.+++.+.+.+.... ..+|||+|||+|.++..++.. .++++|+++..+..++.........++.+...|... +
T Consensus 94 e~l~~~~~~~~~~~~--~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~ 170 (275)
T PRK09328 94 EELVEWALEALLLKE--PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-P 170 (275)
T ss_pred HHHHHHHHHhccccC--CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-c
Confidence 444444443333222 348999999999999999865 478888877666544443331122356777776533 3
Q ss_pred CCCCCeeEEEeccccccccc---------------------C----hHHHHHHHHHcccCCcEEEEEe
Q 009069 278 YPSRAFDMAHCSRCLIPWGQ---------------------Y----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~---------------------d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+++++||+|+++.-+..... + ...++.++.++|+|||++++..
T Consensus 171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 34678999999653321100 0 1457788889999999999974
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.1e-08 Score=103.14 Aligned_cols=125 Identities=13% Similarity=0.109 Sum_probs=84.3
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC-CCCeeEEEecccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP-SRAFDMAHCSRCLIP 294 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp-d~sFDlV~~~~~l~h 294 (544)
.+|||+|||+|.++..++.+ .++++|+++.++..++.+. ...+.++.+..+|.....++ .++||+|+|+.-.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa-~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA-ADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 38999999999999888753 5788999887776555443 34456778888876543332 457999999774422
Q ss_pred ccc--------------------Ch----HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHH
Q 009069 295 WGQ--------------------YD----GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIA 350 (544)
Q Consensus 295 ~~~--------------------d~----~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la 350 (544)
-.+ +. ..++.++.+.|+|||.+++..... ..+.+++++
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~------------------Q~e~V~~ll 393 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD------------------QGAAVRGVL 393 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc------------------HHHHHHHHH
Confidence 110 11 256677788999999999875411 123466677
Q ss_pred Hhhcceeeeeecc
Q 009069 351 RSLCWKKLIQKKD 363 (544)
Q Consensus 351 ~~l~w~~v~~~~~ 363 (544)
+..+|..+....|
T Consensus 394 ~~~Gf~~v~v~kD 406 (423)
T PRK14966 394 AENGFSGVETLPD 406 (423)
T ss_pred HHCCCcEEEEEEc
Confidence 7778876554333
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.6e-08 Score=93.45 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEecccc-CCCCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIR-LPYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~-LPfpd~sFDlV~~~~ 290 (544)
+.+|||+|||+|.++..++.. .++++|+++.++..++.+. ...+ .++.+..+|... ++..++.||.|++..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~-~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA-EKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 348999999999998877542 4788899887665444333 3344 246666667654 333346899999854
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ..+...++.++.++|||||++++...
T Consensus 120 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 120 G----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred C----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 2 22357899999999999999998643
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=101.08 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=66.6
Q ss_pred CEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe-----ccccCCC--CCCCeeEEEecc
Q 009069 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVM-----ASIRLPY--PSRAFDMAHCSR 290 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~-----d~~~LPf--pd~sFDlV~~~~ 290 (544)
+.++|+|||+|..+..+++. .|+++|+++ +|+++|.+.. ++.+... +.+..++ .+++.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~-----~mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSE-----AMLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCH-----HHHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 37999999999767777775 788888854 5556665442 3222211 2222333 489999999999
Q ss_pred cccccccChHHHHHHHHHcccCCc-EEEEEe
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGG-YWILSG 320 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG-~Lvis~ 320 (544)
|+ ||.+ .+.+++++.|+||+.| .+++-.
T Consensus 109 a~-HWFd-le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 109 AV-HWFD-LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hH-Hhhc-hHHHHHHHHHHcCCCCCEEEEEE
Confidence 99 8996 6999999999999877 555543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-08 Score=92.44 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=76.0
Q ss_pred EEEEeCCCCcHHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 221 TAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~----V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
+|||+|||.|.+...|++.+ .+++|.++..+.- +..+|..++.+ +.|.++|+..-.+..+.||+|+--..+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L-A~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL-AQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH-HHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 79999999999999999874 5667776665543 33456666765 88999998887888899999996444322
Q ss_pred c--c-c----ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 W--G-Q----YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~--~-~----d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. . + .+..++..+.++|+|||.|+|..-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 1 1 1 114689999999999999999864
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.3e-08 Score=97.82 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=96.7
Q ss_pred CCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-CCeEE
Q 009069 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALI 268 (544)
Q Consensus 194 g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg-v~~~~ 268 (544)
...|..+.+.. .|..+..... ..+|||+|||+|..+..++++ .+.++++.+.+...++...+.... ..+.+
T Consensus 24 ~~~~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v 99 (248)
T COG4123 24 RCGFRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQV 99 (248)
T ss_pred CCccccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeE
Confidence 34455566666 3566655443 458999999999999999987 577888877666555555544221 24677
Q ss_pred EEeccccCC--CCCCCeeEEEecccccccccC-----------------hHHHHHHHHHcccCCcEEEEEeCCCCccccc
Q 009069 269 GVMASIRLP--YPSRAFDMAHCSRCLIPWGQY-----------------DGLYLIEVDRVLRPGGYWILSGPPVNWESHW 329 (544)
Q Consensus 269 ~v~d~~~LP--fpd~sFDlV~~~~~l~h~~~d-----------------~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~ 329 (544)
..+|..... ..-.+||+|+|+.-+..-... .+.+++.+.++|||||+|.++.++..
T Consensus 100 ~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er----- 174 (248)
T COG4123 100 IEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER----- 174 (248)
T ss_pred ehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH-----
Confidence 777766554 334579999998755433322 14788889999999999999976422
Q ss_pred cCCCcchhhhHhhhhhHHHHHHhhcceeee
Q 009069 330 KGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 330 ~~w~~t~e~L~~~~~~ie~la~~l~w~~v~ 359 (544)
..++-+++++..|....
T Consensus 175 -------------l~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 175 -------------LAEIIELLKSYNLEPKR 191 (248)
T ss_pred -------------HHHHHHHHHhcCCCceE
Confidence 22355667776665443
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.1e-08 Score=95.43 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=72.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPS 280 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd 280 (544)
....+.+.+....+. +|||+|||+|.++..|++. .++++|+++..+..+...+.. .+. ++.+..+|........
T Consensus 66 ~~~~l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 66 MVARMTELLELKPGD--RVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHHhcCCCCCC--EEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCCcC
Confidence 334555566555444 8999999999998877765 578888876555444433332 233 4677777654322234
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.||+|++..++.+ +..++.+.|+|||.+++...
T Consensus 143 ~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 78999999775533 34567899999999999754
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.5e-08 Score=96.42 Aligned_cols=150 Identities=22% Similarity=0.248 Sum_probs=95.1
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhccc-----C-CCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHH
Q 009069 190 FPGGGTMFPRGADAYIDDIGKLINLK-----D-GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE 261 (544)
Q Consensus 190 F~g~g~~F~~ga~~~i~~L~~lL~l~-----~-g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~e 261 (544)
+.|.|.||--..+.+. +++... + ....++||||+|.|..+..|+.. .|.++++|+.| +..-.+
T Consensus 64 ~LgRG~MFvfS~~Q~~----~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M-----r~rL~~ 134 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFR----KLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM-----RWRLSK 134 (265)
T ss_pred hhcCCcEEEecHHHHH----HHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH-----HHHHHh
Confidence 4556666655555443 333322 1 13457999999999999999885 78888886654 444556
Q ss_pred cCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe--CCCCcccc-ccCCCcchhh
Q 009069 262 RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG--PPVNWESH-WKGWNRTTED 338 (544)
Q Consensus 262 rgv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~--pp~~w~~~-~~~w~~t~e~ 338 (544)
+|..+. +.....-.+..||+|.|..++ .-.++|..+|+++.+.|+|+|.+++.. |-..+... ...+.++.|.
T Consensus 135 kg~~vl----~~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~ 209 (265)
T PF05219_consen 135 KGFTVL----DIDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSEL 209 (265)
T ss_pred CCCeEE----ehhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhh
Confidence 775432 333333345689999999988 455568999999999999999999973 32222222 1234555555
Q ss_pred hHhhhhhHHHHHHhh
Q 009069 339 LKSEQNGIETIARSL 353 (544)
Q Consensus 339 L~~~~~~ie~la~~l 353 (544)
+.-....+|+.+.++
T Consensus 210 l~~~g~~~E~~v~~l 224 (265)
T PF05219_consen 210 LPVKGATFEEQVSSL 224 (265)
T ss_pred cCCCCCcHHHHHHHH
Confidence 544334444444444
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.9e-08 Score=93.51 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=78.4
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFD 284 (544)
+.+.+.+...+ ....|-|+|||.+.++..+... .|+..|+... +-.+..+|...+|+++++.|
T Consensus 61 d~iI~~l~~~~-~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 61 DVIIEWLKKRP-KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHCTS--TTS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EE
T ss_pred HHHHHHHHhcC-CCEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCcee
Confidence 55566665333 2347999999999999877533 5666666221 11356789999999999999
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeecc-
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD- 363 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~- 363 (544)
+|++..+| ...+-..++.|+.|+|||||.|+|..--.. + +. .+......+++||+...+...
T Consensus 125 v~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAEV~SR----f-------~~----~~~F~~~~~~~GF~~~~~d~~n 187 (219)
T PF05148_consen 125 VAVFCLSL--MGTNWPDFIREANRVLKPGGILKIAEVKSR----F-------EN----VKQFIKALKKLGFKLKSKDESN 187 (219)
T ss_dssp EEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG------------S-----HHHHHHHHHCTTEEEEEEE--S
T ss_pred EEEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEEeccc----C-------cC----HHHHHHHHHHCCCeEEecccCC
Confidence 99987766 334458999999999999999999854111 1 11 233556788899988875332
Q ss_pred ----EEEEeccC
Q 009069 364 ----LAIWQKPT 371 (544)
Q Consensus 364 ----~aIwqKP~ 371 (544)
+..++|..
T Consensus 188 ~~F~~f~F~K~~ 199 (219)
T PF05148_consen 188 KHFVLFEFKKIR 199 (219)
T ss_dssp TTEEEEEEEE-S
T ss_pred CeEEEEEEEEcC
Confidence 35556654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=91.84 Aligned_cols=108 Identities=16% Similarity=0.072 Sum_probs=72.2
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc-CCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR-LPYP 279 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~-LPfp 279 (544)
..+.+.+....+ .+|||+|||+|.++..+++. .++++|+++.++..++.+.. +.+. ++.+..+|+.. ++..
T Consensus 30 ~~l~~~l~~~~~--~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~-~~~~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 30 LLLISQLRLEPD--SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD-RFGVKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCeEEEECchHHHHhhC
Confidence 345556554443 48999999999999888753 58889998877765554433 3333 46666666543 2222
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+|.++... ......++.++.++|+|||+|++..+
T Consensus 107 ~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 107 APAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 23457665421 22347899999999999999999865
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-07 Score=94.51 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=69.8
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
.+|||+|||+|.++..++.. .++++|+++..+..+..+ +...+.. +.+..+|... ++++++||+|+++.-.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 47999999999999999864 588888887666544443 3333443 6777777543 44555899999963221
Q ss_pred cc-------------c-------c----ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PW-------------G-------Q----YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~-------------~-------~----d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.- + . ....++.++.++|+|||+|++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11 0 0 114678889999999999999865
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=91.04 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=64.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCeeE
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAFDM 285 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--------fpd~sFDl 285 (544)
+.+|||+|||+|.++..++++ .++++|+++.. ....+.+..+|....+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 348999999999998888764 38888987732 1123456666655432 45678999
Q ss_pred EEeccccc---ccccC-------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLI---PWGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~---h~~~d-------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|++..+.+ +|..+ ...++.++.++|+|||.+++...
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 99865421 11111 15789999999999999999753
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-07 Score=93.46 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=70.1
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
.+|||+|||+|.++..++++ .++++|+++.++..++.+ +...++ .+.+..+|... ++++++||+|+++.-..
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n-~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 47999999999999999875 578888887766555543 334454 36777777533 34566899999974221
Q ss_pred c------c----cc----------Ch----HHHHHHHHHcccCCcEEEEEeC
Q 009069 294 P------W----GQ----------YD----GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h------~----~~----------d~----~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. . .. +. ..++.++.++|+|||.+++...
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 0 00 01 4678899999999999999864
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.2e-08 Score=96.52 Aligned_cols=120 Identities=18% Similarity=0.317 Sum_probs=82.4
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcC------CCe
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERG------VPA 266 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~erg------v~~ 266 (544)
....-..++.-+++........+||+||||.|....-+++- .+.+.|++|..+. +..++. ..+
T Consensus 52 kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~-----~vk~~~~~~e~~~~a 126 (264)
T KOG2361|consen 52 KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIE-----LVKKSSGYDESRVEA 126 (264)
T ss_pred chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHH-----HHHhccccchhhhcc
Confidence 33444556777777655544447999999999877777664 3667777765443 333221 122
Q ss_pred EEEEecc--ccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeCCC
Q 009069 267 LIGVMAS--IRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 267 ~~~v~d~--~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
.+..++. ..-|...+++|+|++.++|...+++. ..++.++.++|||||.+++.+...
T Consensus 127 fv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 127 FVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred cceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 2222222 23456789999999999998887655 789999999999999999986533
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-08 Score=100.22 Aligned_cols=142 Identities=11% Similarity=0.154 Sum_probs=85.0
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
...++||.|+|.|+.+..|+-. .|..++..+..+..+...+.........+.....+..-.+.++||+|++..|+-|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 3568999999999999988765 3445555443333333222111222234455556666545679999999999999
Q ss_pred cccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeee
Q 009069 295 WGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~ 361 (544)
++++. ..+|+.+...|+|||.+++-.+-... ....+......+....+.+..+.++.+++.+.+.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~--~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSS--GFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS--SEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC--CCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 99866 89999999999999999997542111 0111222233333345667889999999988754
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=92.05 Aligned_cols=159 Identities=14% Similarity=0.226 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-----CeEEEEec
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-----PALIGVMA 272 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-----~~~~~v~d 272 (544)
+...+.|.++++.. +.+||+||+|||..+.+++++ .....|++..... .....+.+.+. ++. .|
T Consensus 12 ~pIl~vL~~~l~~~---~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~-sI~a~~~~~~~~Nv~~P~~---lD 84 (204)
T PF06080_consen 12 DPILEVLKQYLPDS---GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRP-SIRAWIAEAGLPNVRPPLA---LD 84 (204)
T ss_pred hHHHHHHHHHhCcc---CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHh-hHHHHHHhcCCcccCCCeE---ee
Confidence 33444455554322 125999999999999999886 2333444332211 11112222222 222 23
Q ss_pred cccC--CC------CCCCeeEEEecccccccccCh--HHHHHHHHHcccCCcEEEEEeCCCCccc-------cccCCC--
Q 009069 273 SIRL--PY------PSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNWES-------HWKGWN-- 333 (544)
Q Consensus 273 ~~~L--Pf------pd~sFDlV~~~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvis~pp~~w~~-------~~~~w~-- 333 (544)
.... |. ..++||+|+|..++ |+.... +.+|..+.++|+|||.|++-+|-..--. .++.|.
T Consensus 85 v~~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~ 163 (204)
T PF06080_consen 85 VSAPPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRS 163 (204)
T ss_pred cCCCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhc
Confidence 3332 22 35689999999988 555433 7899999999999999999887222100 111111
Q ss_pred -cchhhhHhhhhhHHHHHHhhcceeeeee-----ccEEEEec
Q 009069 334 -RTTEDLKSEQNGIETIARSLCWKKLIQK-----KDLAIWQK 369 (544)
Q Consensus 334 -~t~e~L~~~~~~ie~la~~l~w~~v~~~-----~~~aIwqK 369 (544)
++...+++ .++++.++.+.+++..... +.+.||+|
T Consensus 164 rdp~~GiRD-~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 164 RDPEWGIRD-IEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CCCCcCccC-HHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 11223333 3468889999888765532 23567765
|
The function of this family is unknown. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.6e-08 Score=92.11 Aligned_cols=78 Identities=19% Similarity=0.100 Sum_probs=61.2
Q ss_pred EEeCCccchHHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 243 AVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 243 ~vdisp~dls~a~v~~A~er---gv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
++|+++.|+..++.+..... ..++.+.++|+..+|+++++||+|++..+++++. +...+|+|+.|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEEE
Confidence 57787777765543322111 1257899999999999999999999999996664 5899999999999999999987
Q ss_pred eC
Q 009069 320 GP 321 (544)
Q Consensus 320 ~p 321 (544)
+.
T Consensus 81 d~ 82 (160)
T PLN02232 81 DF 82 (160)
T ss_pred EC
Confidence 53
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.67 E-value=7e-07 Score=90.30 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=74.7
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR 275 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~ 275 (544)
..+..++.+...+... ....+|||+|||+|.++..+++. .++++|+++..+..++.+.. ..+ ..+..+|...
T Consensus 69 ~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~-~~~--~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA-DAG--GTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcC--CEEEEeechh
Confidence 3444555555544321 12347999999999999988764 57888888776655544332 333 3566666543
Q ss_pred -CCC-CCCCeeEEEecccccccc---------------------cCh----HHHHHHHHHcccCCcEEEEEeC
Q 009069 276 -LPY-PSRAFDMAHCSRCLIPWG---------------------QYD----GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 -LPf-pd~sFDlV~~~~~l~h~~---------------------~d~----~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++- ..++||+|+++.-..... .+. ..++..+.++|+|||.|++...
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 221 135799999986433210 011 3677778899999999999864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-07 Score=93.04 Aligned_cols=131 Identities=19% Similarity=0.268 Sum_probs=89.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFD 284 (544)
+.|++.|...++. ..|-|+|||-+.++. .+ ..|+.+|+.+ ++-.+..+|+.++|.+|++.|
T Consensus 169 d~ii~~ik~r~~~-~vIaD~GCGEakiA~--~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svD 230 (325)
T KOG3045|consen 169 DVIIRKIKRRPKN-IVIADFGCGEAKIAS--SERHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVD 230 (325)
T ss_pred HHHHHHHHhCcCc-eEEEecccchhhhhh--ccccceeeeeeec---------------CCCceeeccccCCcCccCccc
Confidence 4455555544333 468999999998875 22 3677777733 233556778999999999999
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeecc-
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD- 363 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~- 363 (544)
++++..+| ...+...++.|+.|+|||||.|+|..--.. ..+ ...+......+||........
T Consensus 231 vaV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv~SR-----------f~d----v~~f~r~l~~lGF~~~~~d~~n 293 (325)
T KOG3045|consen 231 VAVFCLSL--MGTNLADFIKEANRILKPGGLLYIAEVKSR-----------FSD----VKGFVRALTKLGFDVKHKDVSN 293 (325)
T ss_pred EEEeeHhh--hcccHHHHHHHHHHHhccCceEEEEehhhh-----------ccc----HHHHHHHHHHcCCeeeehhhhc
Confidence 99975544 455568999999999999999999854111 111 122556778899987654332
Q ss_pred ----EEEEeccC
Q 009069 364 ----LAIWQKPT 371 (544)
Q Consensus 364 ----~aIwqKP~ 371 (544)
+.-|+|+-
T Consensus 294 ~~F~lfefkK~~ 305 (325)
T KOG3045|consen 294 KYFTLFEFKKTP 305 (325)
T ss_pred ceEEEEEEecCC
Confidence 34566653
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-08 Score=97.96 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=81.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
...++|||||.|.....|..++ ++.+|.+..|+...+ -+...++.....+.|.+.|+|.+++||+|+++..+ ||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccccccchhhhhhhhhh-hh
Confidence 3479999999999999999885 466777655443221 22234566778889999999999999999999999 99
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..+....+..+...|||.|.|+-+..
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHh
Confidence 99889999999999999999998743
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=99.29 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHH-H-----c----CCCeEEEEecccc------CCC
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFAL-E-----R----GVPALIGVMASIR------LPY 278 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~-e-----r----gv~~~~~v~d~~~------LPf 278 (544)
.+.+|||+|||-|.-....... .+.++|++...+.++..+... . + ...+.+..+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 4568999999988766666554 578899988877766655521 0 1 1346666666432 222
Q ss_pred CCCCeeEEEecccccccccCh---HHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....||+|-|.+++|+..+.. ..+|..+...|||||+|+.+.|
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 235999999999998877765 5699999999999999999987
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=97.44 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHc------CCCeEEEEecc------ccCCCCCCCe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER------GVPALIGVMAS------IRLPYPSRAF 283 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~er------gv~~~~~v~d~------~~LPfpd~sF 283 (544)
+..+||+|||-|.-+....+. .++++||+...+.+++.+.-.-+ -.++.|..+|. ..+++++.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 346999999999887777665 56888998877766665432211 13567777773 3456677779
Q ss_pred eEEEecccccccccCh---HHHHHHHHHcccCCcEEEEEeC
Q 009069 284 DMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|-|.+|+|.-.... ..+|..+.+.|||||+||-+.|
T Consensus 198 DivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 198 DIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred ceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 9999999996655433 5789999999999999999988
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=96.47 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=74.1
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP 277 (544)
....+.+.+....+. +|||||||+|.++..+++. .++++|+++.++..++... ...+. ++.+..+|....+
T Consensus 68 l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l-~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-RRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCChhhcc
Confidence 344555666555444 8999999999999998864 2788888876665444333 33444 4677777766655
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.....||+|++...+.+ ....+.+.|+|||.+++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 55578999998765432 2345678999999998864
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-07 Score=91.91 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
..++|||||+|.|.++..++++ .+++.|+ +..++.+.+ ...+.+..+|.. -++|. +|+++..+++|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 3458999999999999999886 3555565 344445544 557888888877 67776 99999999999
Q ss_pred ccccCh-HHHHHHHHHcccCC--cEEEEEeC
Q 009069 294 PWGQYD-GLYLIEVDRVLRPG--GYWILSGP 321 (544)
Q Consensus 294 h~~~d~-~~~L~Ei~RVLKPG--G~Lvis~p 321 (544)
+|.++. ..+|+.+.+.|+|| |.++|.+.
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 999866 78999999999999 99999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.3e-07 Score=92.18 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEecccc-CCCCCCCeeEEE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE-----RGVPALIGVMASIR-LPYPSRAFDMAH 287 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e-----rgv~~~~~v~d~~~-LPfpd~sFDlV~ 287 (544)
..++|||||||.|..+..++++ .|+++|+++..+..+...+... ...++.+..+|... +...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4568999999999999998876 4788888876665444433221 12356777777544 333567899999
Q ss_pred ecccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 288 CSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 288 ~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+...- ++... ...+++.+.++|+|||.+++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 85432 33221 1578899999999999999864
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.2e-07 Score=92.06 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=70.2
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
.+|||+|||+|.++..++.. .++++|+++..+..++.+ +...++ .+.+..+|... ++++++||+|+|+.-..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 47999999999999999865 578888888777555543 333443 37777777543 23456899999974221
Q ss_pred -------------cccc-------Ch----HHHHHHHHHcccCCcEEEEEeC
Q 009069 294 -------------PWGQ-------YD----GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 -------------h~~~-------d~----~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|.+. +. ..++.++.++|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1110 01 4678999999999999999754
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-07 Score=90.73 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~-V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
-.....+.+.+.++++. +|||||||+|.+++.|+.. + |+++++.+.-...++..+......++.+..+|...-
T Consensus 58 P~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 34556777788777766 9999999999999888864 2 678888775444444444433333678888876443
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
--....||.|++..+....+ ..+.+.||+||.+++-..
T Consensus 136 ~~~~apfD~I~v~~a~~~ip-------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEIP-------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred cccCCCcCEEEEeeccchHH-------HHHHHhcCCCcEEEEEEc
Confidence 22456799999988763322 447778999999999743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-07 Score=86.58 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=70.9
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFD 284 (544)
.+.+.+....+ .+|||+|||+|.++..++++ .++++|+++.++...+..+. ...++.+..+|+..+++++..||
T Consensus 4 ~i~~~~~~~~~--~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~--~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAANLRPG--DTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA--AADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcCCCCc--CEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc--cCCCEEEEECchhcCCccccCCC
Confidence 44555544443 38999999999999999987 57788887655543332221 12357788889999888887899
Q ss_pred EEEecccccccccChHHHHHHHHHc--ccCCcEEEEE
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRV--LRPGGYWILS 319 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RV--LKPGG~Lvis 319 (544)
.|+++.-+ +.. ...+..+.+. +.++|.|++.
T Consensus 80 ~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 80 KVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred EEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 99998754 322 2334444332 4588888886
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.5e-07 Score=97.19 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=76.4
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPSR 281 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--fpd~ 281 (544)
+...+....+ .+|||+|||+|..+..++++ .++++|+++.++...+.+ +...+..+.+..+|...++ +..+
T Consensus 236 ~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n-~~~~g~~~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 236 AATLLAPQNG--ERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVREN-LQRLGLKATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHcCCCCC--CEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEcCcccchhhcccC
Confidence 4445544444 48999999999999988875 478888888766554433 3445666777778876654 3467
Q ss_pred CeeEEEecc----c--cc-----ccccC----------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSR----C--LI-----PWGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~----~--l~-----h~~~d----------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||.|++.. . +. .|... ...+|.++.++|||||.+++++-
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 899999532 1 10 11111 13689999999999999999864
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=7e-07 Score=97.11 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=77.1
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC----
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP---- 277 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP---- 277 (544)
+...+...++ .+|||+|||+|..+..+++. .++++|+++..+...+.+ +...|+ ++.+...|...++
T Consensus 244 ~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 244 VAPLLDPQPG--EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHhCCCCc--CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccc
Confidence 3444444444 48999999999999888764 488888887776555443 334455 4677778877765
Q ss_pred CCCCCeeEEEec------cccccccc-----C----------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCS------RCLIPWGQ-----Y----------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~------~~l~h~~~-----d----------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..++||.|++. .++.+.++ . +..+|.++.++|||||+|+.++-
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 456789999962 22222221 0 25789999999999999999864
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=96.70 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=79.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
..+|||+|||+|.++..++.. .++++|+++.++..+..+. ...++ .+.+..+|... ++++++||+|+|+.-.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~-~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNA-IKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH-HHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 347999999999999888753 5888999887776555443 33343 35666666432 2345689999996533
Q ss_pred ccccc---------------------Ch----HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHH
Q 009069 293 IPWGQ---------------------YD----GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIE 347 (544)
Q Consensus 293 ~h~~~---------------------d~----~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie 347 (544)
+...+ +. ..++.++.++|+|||.|++..... ..+.+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~------------------q~~~v~ 278 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK------------------QEEAVT 278 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc------------------hHHHHH
Confidence 22111 01 246778889999999999975311 123455
Q ss_pred HHHHhhcceeeee
Q 009069 348 TIARSLCWKKLIQ 360 (544)
Q Consensus 348 ~la~~l~w~~v~~ 360 (544)
.+++..+|+.+..
T Consensus 279 ~~~~~~g~~~~~~ 291 (506)
T PRK01544 279 QIFLDHGYNIESV 291 (506)
T ss_pred HHHHhcCCCceEE
Confidence 6666777765543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=89.33 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEecccc-CCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIR-LPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~-LPfpd~sFDlV~~~~~l 292 (544)
+++|||||||+|.++..+++. .++++|+++..+..+...+.... ..++.+.++|... +.-..++||+|++.. +
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~ 145 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-F 145 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-C
Confidence 458999999999999988764 57888887765544443332211 2346777777533 222246899999753 2
Q ss_pred cc--ccc--ChHHHHHHHHHcccCCcEEEEE
Q 009069 293 IP--WGQ--YDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 293 ~h--~~~--d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
.. .+. ....+++++.++|+|||.|++.
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 11 111 1268999999999999999996
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-06 Score=95.50 Aligned_cols=112 Identities=10% Similarity=0.052 Sum_probs=75.3
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEeccccCCC--
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALI--GVMASIRLPY-- 278 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~--~v~d~~~LPf-- 278 (544)
.+...+....+ .+|||+|||+|..+..+++. .++++|+++..+...+.+ +...|+.+.+ ..+|....++
T Consensus 229 ~~~~~L~~~~g--~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n-~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 229 WVATWLAPQNE--ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYEN-LKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHhCCCCC--CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEeccccccccccc
Confidence 45555554444 48999999999998888764 588889988777555433 3344555433 4445444443
Q ss_pred CCCCeeEEEe----c--cccccccc-----C----------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHC----S--RCLIPWGQ-----Y----------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~----~--~~l~h~~~-----d----------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++||.|++ + ..+.+.++ . +..+|.++.++|||||.|++++-
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 5678999995 2 23322221 1 25799999999999999999975
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.4e-07 Score=98.27 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEe----
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHC---- 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~---- 288 (544)
+.+|||+|||+|..+..+++. .++++|+++.++..++.+ +.+.|+ .+.+...|...++ ++++||+|++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~-~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH-ASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH-HHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 348999999999988777653 488899988777655433 344455 3677777877665 5678999995
Q ss_pred ccc--cc-----ccccC----------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRC--LI-----PWGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~--l~-----h~~~d----------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.. +. .|... +..+|.++.++|||||.+++++-
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 221 10 11111 23689999999999999999975
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-06 Score=85.81 Aligned_cols=118 Identities=20% Similarity=0.251 Sum_probs=77.5
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+|||+|||+|..+..++.+ .|+++|+++..+.-+.. .|...++ +..+...| .-.+.. ++||+|+|+.-..+-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~-Na~~~~l~~~~~~~~d-lf~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE-NAERNGLVRVLVVQSD-LFEPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH-HHHHcCCccEEEEeee-cccccC-CceeEEEeCCCCCCC
Confidence 6999999999999999875 58889998876654443 3445553 33334332 122222 389999998754433
Q ss_pred c----------cCh--------------HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHH
Q 009069 296 G----------QYD--------------GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIAR 351 (544)
Q Consensus 296 ~----------~d~--------------~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~ 351 (544)
. .+| ..++.++.+.|+|||.+++.....+ .+.++++..
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q------------------~~~v~~~~~ 251 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ------------------GEAVKALFE 251 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc------------------HHHHHHHHH
Confidence 2 011 2678889999999999999854111 234667777
Q ss_pred hhc-ceeee
Q 009069 352 SLC-WKKLI 359 (544)
Q Consensus 352 ~l~-w~~v~ 359 (544)
..+ +..+.
T Consensus 252 ~~~~~~~v~ 260 (280)
T COG2890 252 DTGFFEIVE 260 (280)
T ss_pred hcCCceEEE
Confidence 777 44443
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.4e-07 Score=92.32 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=73.5
Q ss_pred HhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCee
Q 009069 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFD 284 (544)
.+...++ .+|||+|||+|..+..+++. .++++|+++..+.....++. ..++ ++.+...|...++...+.||
T Consensus 66 ~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~-~~g~~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 66 ALEPDPP--ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN-RCGVLNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred HhCCCCc--CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH-HcCCCcEEEecCCHHHhhhhccCCC
Confidence 3444444 48999999999999888763 47888888776654444433 3444 46677777766665566799
Q ss_pred EEEecc------cccc-------ccc--------ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 285 MAHCSR------CLIP-------WGQ--------YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 285 lV~~~~------~l~h-------~~~--------d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.|++.. ++.+ +.+ ....+|..+.+.|||||+|+.++-
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 999621 1111 111 113589999999999999999965
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=88.89 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=68.4
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
.+|||+|||+|.++..++.+ .++++|+++. +++.++++...+.+...|...+. .+++||+|+++..+++.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~-----al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE-----FARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCcccc
Confidence 47999999999998888664 4777777654 44555554445777888877665 35689999999988764
Q ss_pred ccCh-------------------HHHHHHHHHcccCCcEEEEE
Q 009069 296 GQYD-------------------GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 296 ~~d~-------------------~~~L~Ei~RVLKPGG~Lvis 319 (544)
.... ..++..+.++|+|+|.+.+.
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 3321 25667788899999987775
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=85.20 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=72.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPS 280 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd 280 (544)
....+.+++.+.+++ +|||||||+|..++-|++. .|..++..+.-...+..++. ..|. ++.+.++|...=--+.
T Consensus 60 ~vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~-~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLE-TLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHH-HcCCCceEEEECCcccCCCCC
Confidence 445677788777776 9999999999999999886 56666664432222222222 2344 5777777643321234
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..||.|+...+....+ ..+.+-||+||.+++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEEc
Confidence 7899999988774444 346677999999999643
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-06 Score=84.86 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHH-HHcCC----------------CeEEEEeccccCCCCC-
Q 009069 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA-LERGV----------------PALIGVMASIRLPYPS- 280 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A-~ergv----------------~~~~~v~d~~~LPfpd- 280 (544)
..+||+.|||.|..+..|+++|..++++ |+++.+++.+ .+++. .+.+.++|...++...
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGv---Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGV---DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEE---ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEE---ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 3489999999999999999997555555 4555555554 23321 2466778877766433
Q ss_pred CCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
++||+|+-..+|+-++++. ..+.+.+.++|+|||.+++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4799999988887777655 78999999999999995443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.8e-07 Score=86.37 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=70.9
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-CC--CCCCCeeEEEeccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LP--YPSRAFDMAHCSRCLI 293 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-LP--fpd~sFDlV~~~~~l~ 293 (544)
.+||||||.|.+...++.. +++++|+...-+..+..+.......++.+..+|+.. +. ++++++|.|+..+-=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD- 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD- 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC-
Confidence 7999999999999999875 688888877666555554444444478888877655 22 567999999986633
Q ss_pred ccccCh--------HHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|+... ..++.++.++|+|||.|.+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 565422 4899999999999999999853
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=94.34 Aligned_cols=111 Identities=20% Similarity=0.222 Sum_probs=75.8
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLP-YPS 280 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LP-fpd 280 (544)
+..++...++ .+|||+|||+|..+.++++. .++++|+++..+.....+ +.+.|+. +.+...|...++ +.+
T Consensus 229 ~~~~l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n-~~r~g~~~v~~~~~Da~~l~~~~~ 305 (431)
T PRK14903 229 VPLLMELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH-AKRLKLSSIEIKIADAERLTEYVQ 305 (431)
T ss_pred HHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhhhhhhhh
Confidence 3334444444 48999999999988887764 488899988777555443 3344553 667778877766 456
Q ss_pred CCeeEEEecc-c--cccccc------------------ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSR-C--LIPWGQ------------------YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~-~--l~h~~~------------------d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||.|++.. | +..+.. .+..+|.++.+.|||||.+++++-
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7899999621 1 111111 124678999999999999999975
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.5e-06 Score=85.19 Aligned_cols=102 Identities=10% Similarity=0.106 Sum_probs=67.9
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc----CCCeEEEEecccc-CCCCCCCeeEEEe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIR-LPYPSRAFDMAHC 288 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~er----gv~~~~~v~d~~~-LPfpd~sFDlV~~ 288 (544)
.+++||+||||+|.++..+++. .++++|+++..+..+...+.... ...+.+...|... +.-..++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3458999999999999888765 47888887766554443322211 1235555555432 2223578999998
Q ss_pred cccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 289 SRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 289 ~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.... +.... ...+++.+.++|+|||.+++..
T Consensus 152 D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 6542 22221 2578899999999999999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=95.58 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=74.2
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC--C
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--Y 278 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP--f 278 (544)
.+...+...++ .+|||+|||+|..+..+++. .++++|+++..+..++. .+.+.++ .+.+..+|...++ +
T Consensus 241 lv~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~-n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE-NAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCCcccccchh
Confidence 34445544444 48999999999999888764 48888887766654443 3334454 3677777776653 3
Q ss_pred CCCCeeEEEeccc------ccc-----cccC----------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRC------LIP-----WGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~------l~h-----~~~d----------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ ++||+|++..- +.+ |... ...+|.++.++|||||.|++++.
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 3 78999997431 111 1111 13579999999999999998864
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.3e-06 Score=92.13 Aligned_cols=116 Identities=13% Similarity=0.153 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc--
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR-- 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~-- 275 (544)
.+..++.+.+.+....+ .+|||+|||+|.++..|++. .++++|+++.++..+..+. ...++ ++.+..+|+..
T Consensus 282 ~e~l~~~vl~~l~~~~~--~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~-~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDPQPG--DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENA-RRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcCCCC--CEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEEeChHHhh
Confidence 34455566666654443 48999999999999999876 5778888887776555433 33444 57888888643
Q ss_pred --CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCC
Q 009069 276 --LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVN 324 (544)
Q Consensus 276 --LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~ 324 (544)
+++.+++||+|++..-. .. ....+..+.+ ++|++.++++-+|..
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr---~g-~~~~~~~l~~-~~~~~ivyvSCnp~t 404 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPR---AG-AAEVMQALAK-LGPKRIVYVSCNPAT 404 (443)
T ss_pred hhhhhhcCCCCEEEECcCC---cC-hHHHHHHHHh-cCCCeEEEEEeChHH
Confidence 34556789999987633 22 2345555555 699999999976544
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-05 Score=77.64 Aligned_cols=105 Identities=16% Similarity=0.059 Sum_probs=70.7
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc-CCCCCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR-LPYPSR 281 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~-LPfpd~ 281 (544)
....|.+.+++ .++|||||+|+.+..++.. .++++|-++..+.....+.+ .-++ ++.+..+++.. |+-. .
T Consensus 26 ~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~-~fg~~n~~vv~g~Ap~~L~~~-~ 101 (187)
T COG2242 26 TLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAA-RFGVDNLEVVEGDAPEALPDL-P 101 (187)
T ss_pred HHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHH-HhCCCcEEEEeccchHhhcCC-C
Confidence 33444455555 8999999999999999832 56767665544433333322 2234 56677666533 3322 2
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||.|+..... ....+|+.+...|||||.+++..-
T Consensus 102 ~~daiFIGGg~-----~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 102 SPDAIFIGGGG-----NIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCEEEECCCC-----CHHHHHHHHHHHcCcCCeEEEEee
Confidence 79999987742 357899999999999999999853
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.5e-06 Score=85.32 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=68.5
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEeccccC--CCCCCCeeEEE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRL--PYPSRAFDMAH 287 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e----rgv~~~~~v~d~~~L--Pfpd~sFDlV~ 287 (544)
..++||+||||.|..+..+++. .++++|+++..+..+...+... ....+.+..+|.... ..+++.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 3568999999999999999876 4677888765444333323211 123577777775322 12357899999
Q ss_pred ecccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 288 CSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 288 ~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+-..- ++... ...+++.+.++|+|||.++...
T Consensus 171 ~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 85432 33221 1478999999999999998754
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.8e-06 Score=82.52 Aligned_cols=99 Identities=16% Similarity=0.259 Sum_probs=77.5
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC---CCCCCeeEEEecccc
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP---YPSRAFDMAHCSRCL 292 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP---fpd~sFDlV~~~~~l 292 (544)
.+||||||.|.+...++++ +++++++...-+ ....+.+.+.++ ++.+...|+..+- +++++.|-|+.++.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 7999999999999999986 688888866444 444556677888 8888888764432 456699999986643
Q ss_pred cccccCh--------HHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|+... ..++.++.++|+|||.|.+.+.
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 776533 4899999999999999999854
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.4e-06 Score=83.59 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=63.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~ 291 (544)
..+|||+|||+|.++..++++ .++++|+++. +.+.|+++...+.+...|....++ +++||+|+++.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~-----Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT-----YYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH-----HHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 348999999999999988653 4677777554 445555544457777888766554 568999999876
Q ss_pred ccccccC-----------hHHHHHHHHHcccCCcEEEE
Q 009069 292 LIPWGQY-----------DGLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 292 l~h~~~d-----------~~~~L~Ei~RVLKPGG~Lvi 318 (544)
+...... ...++..+.|++++|+. |+
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 6422110 13578888887777775 44
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.3e-06 Score=87.77 Aligned_cols=115 Identities=12% Similarity=0.031 Sum_probs=73.1
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHH--HH--HH---cCCCeEEEEecc
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQ--FA--LE---RGVPALIGVMAS 273 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~--~A--~e---rgv~~~~~v~d~ 273 (544)
-+.+....-......++||+||||+|..++.+++. .++++|+++..+..+..- +. .. ....+.+.+.|+
T Consensus 137 HE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da 216 (374)
T PRK01581 137 HEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA 216 (374)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH
Confidence 34444432223344568999999999998888875 477888866555433310 00 00 124577777776
Q ss_pred cc-CCCCCCCeeEEEeccccccccc---C--hHHHHHHHHHcccCCcEEEEEe
Q 009069 274 IR-LPYPSRAFDMAHCSRCLIPWGQ---Y--DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 274 ~~-LPfpd~sFDlV~~~~~l~h~~~---d--~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.. +.-.++.||+|++... .+... . ...++..+.+.|+|||.|++..
T Consensus 217 ~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 217 KEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred HHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 54 3444678999998642 12111 0 1578999999999999998874
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-05 Score=78.33 Aligned_cols=118 Identities=8% Similarity=0.011 Sum_probs=73.8
Q ss_pred cccHHHHHHHHHHHhcc-cCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEec
Q 009069 198 PRGADAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV-PALIGVMA 272 (544)
Q Consensus 198 ~~ga~~~i~~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d 272 (544)
....+...+.+.+.+.. .. +.+|||+|||+|.++..++.+ .++++|+++..+..+..++ ...+. ++.+...|
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~--~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl-~~~~~~~v~~~~~D 110 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIV--DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNL-ATLKAGNARVVNTN 110 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcC--CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHH-HHhCCCcEEEEEch
Confidence 44556665556665532 22 348999999999999865443 5778888765554333332 22333 46777777
Q ss_pred ccc-CCCCCCCeeEEEecccccccccCh-HHHHHHHHH--cccCCcEEEEEeC
Q 009069 273 SIR-LPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDR--VLRPGGYWILSGP 321 (544)
Q Consensus 273 ~~~-LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~R--VLKPGG~Lvis~p 321 (544)
... ++...+.||+|++..-+ .... ..++..+.. +|+|+|.++++.+
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy---~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPF---RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHHHHhhcCCCceEEEECCCC---CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 544 22234579999998843 2222 455555554 3799999999865
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=84.21 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCC-
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPY- 278 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPf- 278 (544)
..++.+.+++.... +.+|||+|||+|.++..|+++ .++++|+++.++..+.. .+...++ ++.+..+|+..+..
T Consensus 160 ~l~~~v~~~l~~~~--~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~-n~~~~~l~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 160 QLYATARDWVRELP--PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQ-SAAELGLTNVQFQALDSTQFATA 236 (315)
T ss_pred HHHHHHHHHHHhcC--CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEcCHHHHHHh
Confidence 33444445553222 348999999999999999987 47888888777655443 3444555 47888888766542
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVN 324 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~ 324 (544)
..+.||+|++..-. .. ....+.++..-++|++.++++..|..
T Consensus 237 ~~~~~D~Vv~dPPr---~G-~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 237 QGEVPDLVLVNPPR---RG-IGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred cCCCCeEEEECCCC---CC-ccHHHHHHHHHcCCCeEEEEECCccc
Confidence 34579999987532 11 12233344445789999998876544
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=80.28 Aligned_cols=141 Identities=15% Similarity=0.124 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE-EEEecccc--
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPAL-IGVMASIR-- 275 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~-~~v~d~~~-- 275 (544)
...+..+.+.+... ..+.++||+|||+|.|+..|+++ .++++|+++.++.. ..+....+. +...+...
T Consensus 60 ~~kL~~~l~~~~~~-~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~-----~l~~~~~v~~~~~~ni~~~~ 133 (228)
T TIGR00478 60 GEKLKEALEEFNID-VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE-----KLRQDERVKVLERTNIRYVT 133 (228)
T ss_pred HHHHHHHHHhcCCC-CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH-----HHhcCCCeeEeecCCcccCC
Confidence 33344444444331 23558999999999999999987 47888887765543 222222221 22222222
Q ss_pred ---CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccc----cccCCCcchhhhHhhhhhHHH
Q 009069 276 ---LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES----HWKGWNRTTEDLKSEQNGIET 348 (544)
Q Consensus 276 ---LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~----~~~~w~~t~e~L~~~~~~ie~ 348 (544)
.+..-..||+++++..+ .|..+.+.|+| |.+++-.-|..-.. ..++-.++.+......+.+..
T Consensus 134 ~~~~~~d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~ 203 (228)
T TIGR00478 134 PADIFPDFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVID 203 (228)
T ss_pred HhHcCCCceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHH
Confidence 22122367877766533 57889999999 77776543222111 112334444444555556666
Q ss_pred HHHhhcceee
Q 009069 349 IARSLCWKKL 358 (544)
Q Consensus 349 la~~l~w~~v 358 (544)
.+...+|+..
T Consensus 204 ~~~~~~~~~~ 213 (228)
T TIGR00478 204 KGESPDFQEK 213 (228)
T ss_pred HHHcCCCeEe
Confidence 6677777644
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.9e-05 Score=78.05 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=74.7
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-C-eEEEEeccccCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-P-ALIGVMASIRLPYP 279 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~-~~~~v~d~~~LPfp 279 (544)
.|...+.+.+++ +|||.|.|+|.++++|+.. .++..++-+.....|..++. +.++ + +.+...|....-++
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~-~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS-EFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHH-HhccccceEEEeccccccccc
Confidence 455666677766 9999999999999999953 46777775433333332222 2132 2 66666776665555
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ .||+|+. ..+ +|-.++..++.+|+|||.+++-.|
T Consensus 162 ~-~vDav~L-----Dmp-~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 162 E-DVDAVFL-----DLP-DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred c-ccCEEEE-----cCC-ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 5 8999986 334 478999999999999999999877
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=87.55 Aligned_cols=112 Identities=15% Similarity=0.187 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc----
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR---- 275 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~---- 275 (544)
..++.+.+.+....+ .+|||+|||+|.++..|++. .++++|+++.++..+..+.. .+++ ++.+..+|...
T Consensus 279 ~l~~~~~~~l~~~~~--~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~-~~~~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 279 KLVDRALEALELQGE--ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAE-LNGIANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHhccCCC--CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHH-HhCCCceEEEeCCHHHHHHH
Confidence 334455555544333 48999999999999999875 57888888777655554333 3444 57788888654
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++.+++||+|+...... .-...++..+.+ |+|++.++++..
T Consensus 356 ~~~~~~~~D~vi~dPPr~---G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRK---GCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred HHhcCCCCCEEEECcCCC---CCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 234456899999755321 112466666554 899998888854
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.5e-06 Score=81.90 Aligned_cols=113 Identities=19% Similarity=0.374 Sum_probs=68.2
Q ss_pred hcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH--Hc--CCC------------------
Q 009069 212 INLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL--ER--GVP------------------ 265 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~--er--gv~------------------ 265 (544)
++...-....+|||||-.|.++..+++. .+.++||++.-+..|..+.-. .. .+.
T Consensus 52 L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~ 131 (288)
T KOG2899|consen 52 LEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRN 131 (288)
T ss_pred ccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccc
Confidence 3433334557999999999998888874 688899976555443322110 00 000
Q ss_pred -------------e-----EEEEeccccCCCCCCCeeEEEecccc----cccccCh-HHHHHHHHHcccCCcEEEEEeCC
Q 009069 266 -------------A-----LIGVMASIRLPYPSRAFDMAHCSRCL----IPWGQYD-GLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 266 -------------~-----~~~v~d~~~LPfpd~sFDlV~~~~~l----~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+ .++.....-+.+....||+|.|...- ..|.++. ..+|..+.++|.|||+|++. |
T Consensus 132 ~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE--P 209 (288)
T KOG2899|consen 132 EADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE--P 209 (288)
T ss_pred cccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc--C
Confidence 0 00000011122345679999983321 2345444 78999999999999999998 3
Q ss_pred CCcc
Q 009069 323 VNWE 326 (544)
Q Consensus 323 ~~w~ 326 (544)
.-|+
T Consensus 210 QpWk 213 (288)
T KOG2899|consen 210 QPWK 213 (288)
T ss_pred CchH
Confidence 3454
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=88.77 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=68.3
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHH--HHH-H----cCCCeEEEEecccc-CCCCCCCeeE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQ--FAL-E----RGVPALIGVMASIR-LPYPSRAFDM 285 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~--~A~-e----rgv~~~~~v~d~~~-LPfpd~sFDl 285 (544)
..++|||||||+|..+..++++ .++++|+++..+..++.. +.. . ....+.+...|... +...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 3558999999999999988765 467778866555433321 110 0 11346777777654 2333578999
Q ss_pred EEecccccccccCh-----HHHHHHHHHcccCCcEEEEEe
Q 009069 286 AHCSRCLIPWGQYD-----GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 286 V~~~~~l~h~~~d~-----~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|++.... +..... .++++.+.+.|||||.+++..
T Consensus 377 Ii~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9997532 322111 468999999999999999975
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.9e-06 Score=84.72 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=69.9
Q ss_pred CEEEEeCCCCc----HHHHHHhhC--------CcEEEeCCccchHHHHHHH----HH------------Hc------C--
Q 009069 220 RTAIDTGCGVA----SWGAYLMSR--------NILAVSFAPRDTHEAQVQF----AL------------ER------G-- 263 (544)
Q Consensus 220 r~VLDIGCGtG----~~a~~La~~--------~V~~vdisp~dls~a~v~~----A~------------er------g-- 263 (544)
-+|+..||++| +++..|.+. .|.++||+...+..+..-. .. .+ +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 47999999999 555555552 3778888776655444310 00 00 0
Q ss_pred -------CCeEEEEeccccCCCC-CCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 264 -------VPALIGVMASIRLPYP-SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 264 -------v~~~~~v~d~~~LPfp-d~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
-.+.|...+....+++ .+.||+|+|..+++|+.... ..++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1135556666554443 57899999999999987644 789999999999999987763
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=78.71 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=61.5
Q ss_pred CCCEEEEeCCCCc----HHHHHHhhC---------CcEEEeCCccchHHHHHHH------------HHHc------C---
Q 009069 218 SIRTAIDTGCGVA----SWGAYLMSR---------NILAVSFAPRDTHEAQVQF------------ALER------G--- 263 (544)
Q Consensus 218 ~~r~VLDIGCGtG----~~a~~La~~---------~V~~vdisp~dls~a~v~~------------A~er------g--- 263 (544)
..-+|+..||++| +++..|.+. .|.++|+++..+..|..-. .+++ +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4457999999999 566666651 4677777665444333200 0000 0
Q ss_pred -------CCeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 264 -------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 264 -------v~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
-.+.|...+....+.+.+.||+|+|..+++.+.... ..++..+.+.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 125677777666444567899999999999888754 789999999999999999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.1e-05 Score=90.98 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc--------------C--CCeEEEEeccccCCC
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER--------------G--VPALIGVMASIRLPY 278 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~er--------------g--v~~~~~v~d~~~LPf 278 (544)
+.+|||+|||+|.++..|+++ .++++|+++..+..+..+..... . .++.+..+|.... +
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 347999999999999998874 48899998887766665544311 0 1367777776443 2
Q ss_pred CC--CCeeEEEecccccccc---------------------------------cCh----HHHHHHHHHcccCCcEEEEE
Q 009069 279 PS--RAFDMAHCSRCLIPWG---------------------------------QYD----GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 279 pd--~sFDlV~~~~~l~h~~---------------------------------~d~----~~~L~Ei~RVLKPGG~Lvis 319 (544)
.+ ..||+|+++.-.+.-. ++. ..++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 3699999965432110 111 46778888999999999998
Q ss_pred eC
Q 009069 320 GP 321 (544)
Q Consensus 320 ~p 321 (544)
..
T Consensus 278 iG 279 (1082)
T PLN02672 278 MG 279 (1082)
T ss_pred EC
Confidence 64
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.8e-05 Score=79.25 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=65.7
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-----CCCCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-----YPSRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L-P-----fpd~sFDlV 286 (544)
++|||+|||+|..+..|+.. .++++|+++.....+...++ +.++ .+.+..+|+... + .+.++||+|
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~-~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK-KAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 38999999999877766543 58888887765544444333 3444 367777775432 1 124689999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.-.- ......++.++.+.|||||.+++..
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 87431 1222678999999999999988863
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3e-05 Score=66.26 Aligned_cols=97 Identities=28% Similarity=0.411 Sum_probs=64.7
Q ss_pred EEEeCCCCcHHH--HHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccc--CCCCC-CCeeEEEeccccc
Q 009069 222 AIDTGCGVASWG--AYLMSR--NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIR--LPYPS-RAFDMAHCSRCLI 293 (544)
Q Consensus 222 VLDIGCGtG~~a--~~La~~--~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~--LPfpd-~sFDlV~~~~~l~ 293 (544)
+||+|||+|... ..+... .+.++|+++.++......... .... +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999854 333332 345556655544431111111 2222 4566666655 78877 589999 666665
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6665 78999999999999999999865
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=78.67 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCc-EE--EeCCccchHHHHHHHHHHc----C---CCeEEEEec
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LA--VSFAPRDTHEAQVQFALER----G---VPALIGVMA 272 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V-~~--vdisp~dls~a~v~~A~er----g---v~~~~~v~d 272 (544)
.+.+.+.+.-..+...+.+|||...|-|.++...+++|. .+ ++.++.-+ ++|.-+ + ..+.+..+|
T Consensus 119 P~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-----eLa~lNPwSr~l~~~~i~iilGD 193 (287)
T COG2521 119 PLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-----ELAKLNPWSRELFEIAIKIILGD 193 (287)
T ss_pred cHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-----EeeccCCCCccccccccEEeccc
Confidence 344444444444455566999999999999999999865 44 44444333 333322 1 234666666
Q ss_pred cccC--CCCCCCeeEEEecccccccccCh--HHHHHHHHHcccCCcEEEEE-eCCCCccccccCCCcchhhhHhhhhhHH
Q 009069 273 SIRL--PYPSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILS-GPPVNWESHWKGWNRTTEDLKSEQNGIE 347 (544)
Q Consensus 273 ~~~L--Pfpd~sFDlV~~~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvis-~pp~~w~~~~~~w~~t~e~L~~~~~~ie 347 (544)
+... .|+|.+||+|+--.-......+. +.+.+|++|+|||||.++=- +.|.. .+++ .+.+..+.
T Consensus 194 ~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---ryrG--------~d~~~gVa 262 (287)
T COG2521 194 AYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK---RYRG--------LDLPKGVA 262 (287)
T ss_pred HHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---cccc--------CChhHHHH
Confidence 5443 37899999998522111111112 68999999999999988763 43332 1111 12344566
Q ss_pred HHHHhhcceeeeeec--cEEEEecc
Q 009069 348 TIARSLCWKKLIQKK--DLAIWQKP 370 (544)
Q Consensus 348 ~la~~l~w~~v~~~~--~~aIwqKP 370 (544)
+..++.+|..+.... .-.+.+||
T Consensus 263 ~RLr~vGF~~v~~~~~~~gv~A~k~ 287 (287)
T COG2521 263 ERLRRVGFEVVKKVREALGVVAVKP 287 (287)
T ss_pred HHHHhcCceeeeeehhccceEEecC
Confidence 778888998665332 23445554
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.7e-05 Score=76.25 Aligned_cols=155 Identities=15% Similarity=0.219 Sum_probs=95.7
Q ss_pred HHHHHHHHhcc--cCCCCCEEEEeCCCCcHHHHHHhhCCc--EEEeCCccchHHHHHHHHHHc----C------------
Q 009069 204 YIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALER----G------------ 263 (544)
Q Consensus 204 ~i~~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~V--~~vdisp~dls~a~v~~A~er----g------------ 263 (544)
.++.|.++++. ......+||--|||.|+++..++.+|. .+.++|.-|+-. .++.+.. +
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~--s~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA--SNFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH--HHHHHcccCCCCcEEEecceeccc
Confidence 44566666652 222345799999999999999999864 455555544321 1233221 0
Q ss_pred -------------C-------------CeEEEEeccccCCCCC---CCeeEEEecccccccccChHHHHHHHHHcccCCc
Q 009069 264 -------------V-------------PALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGG 314 (544)
Q Consensus 264 -------------v-------------~~~~~v~d~~~LPfpd---~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG 314 (544)
+ ......+|....-.++ ++||+|++.+.+ .-..+.-.+|..|.++|||||
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLkpgG 196 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLKPGG 196 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhccCC
Confidence 0 1122223333332233 689999987644 444445789999999999999
Q ss_pred EEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeecc
Q 009069 315 YWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD 363 (544)
Q Consensus 315 ~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~ 363 (544)
++|=.+|-. |.....+ ...+..++-.+++|..+++++||+.+.++..
T Consensus 197 ~WIN~GPLl-yh~~~~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~ 243 (270)
T PF07942_consen 197 YWINFGPLL-YHFEPMS-IPNEMSVELSLEEIKELIEKLGFEIEKEESS 243 (270)
T ss_pred EEEecCCcc-ccCCCCC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 887777733 2222110 1222235666888999999999998876543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.8e-05 Score=79.72 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHhccc------CCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eE
Q 009069 200 GADAYIDDIGKLINLK------DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--AL 267 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~------~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~--~~ 267 (544)
+.-.|+..+.+++... .+...++||||||+|.+...|+.+ .++++|+++..+..++...+...++. +.
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 3566777777776421 234568999999999887777654 58889998877766665554431332 33
Q ss_pred EEE-eccccCC----CCCCCeeEEEecccccc
Q 009069 268 IGV-MASIRLP----YPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 268 ~~v-~d~~~LP----fpd~sFDlV~~~~~l~h 294 (544)
+.. .+...+. .+++.||+|+|+.-++.
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 432 2222211 24678999999995543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.6e-05 Score=73.50 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=59.8
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEecccc-C---CCCCCCeeE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIR-L---PYPSRAFDM 285 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg----v~~~~~v~d~~~-L---Pfpd~sFDl 285 (544)
.+.+|||+|||+|..+..++.. .|+.+|..+ .-+.....+..++ ..+.+...+-.. . ......||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4568999999999877777665 688889866 3233333333322 234444443211 1 123468999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+++.++. .......++.-+.++|+|+|.+++..+
T Consensus 123 IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999984 444448899999999999999777754
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.3e-05 Score=90.29 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=71.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEeccccC-CCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRL-PYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~L-Pfpd~sFDlV~~~~~ 291 (544)
+++|||+|||+|.++..++.. .|+++|+++..+..++.++.. +++ .+.+..+|.... .-..++||+|++..-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~-ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL-NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 358999999999999999876 378889988777666655443 343 467788775432 111568999999642
Q ss_pred ccccc----------cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWG----------QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~----------~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...-. .+...++..+.++|+|||.|+++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 21111 1114678888999999999999865
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.9e-05 Score=82.63 Aligned_cols=102 Identities=10% Similarity=0.007 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEeccccCC----CCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRLP----YPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~LP----fpd~sFDlV~~ 288 (544)
+.+|||+|||+|.++..++.. .++++|+++..+..+..+++ .+++ .+.+..+|+...- -..++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~-~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVE-LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 458999999999998776544 47889998877765554443 3444 4677778765431 13568999999
Q ss_pred ccccccccc--------ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCLIPWGQ--------YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~h~~~--------d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..-...-.. .-..++..+.++|+|||.|++...
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 753311110 013445567899999999998753
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0001 Score=74.57 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=71.1
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYP 279 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfp 279 (544)
.|...+.+.+|+ +|||.|.|+|+++.+|++. .+...++-......++.++. ..++ .+.+...|.....|.
T Consensus 31 ~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 31 YILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecceeccccc
Confidence 456666777776 9999999999999999864 46777775544433443333 3344 477888887665553
Q ss_pred ---CCCeeEEEecccccccccChHHHHHHHHHcc-cCCcEEEEEeC
Q 009069 280 ---SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVL-RPGGYWILSGP 321 (544)
Q Consensus 280 ---d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVL-KPGG~Lvis~p 321 (544)
++.||.|+. .++ +|-.++..+.++| ||||.++.-.|
T Consensus 108 ~~~~~~~DavfL-----Dlp-~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLP-DPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp TT-TTSEEEEEE-----ESS-SGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred ccccCcccEEEE-----eCC-CHHHHHHHHHHHHhcCCceEEEECC
Confidence 367999986 344 3678899999999 99999999887
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.4e-05 Score=80.96 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=67.7
Q ss_pred CEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC-CCCCCeeEEEeccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-YPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP-fpd~sFDlV~~~~~l~h~ 295 (544)
.+|||+|||+|.++..++.+ .++++|+++..+..+.. .+...++ ++.+..+|..... ...++||+|+...-.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~-N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr--- 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQ-SAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR--- 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC---
Confidence 48999999999999999876 57788887766654443 3334454 5778888865432 122469999987643
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeCCC
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
..-...++..+. .++|++.++++..|.
T Consensus 311 ~G~~~~~l~~l~-~~~p~~ivyvsc~p~ 337 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAPKFILYSSCNAQ 337 (374)
T ss_pred CCCcHHHHHHHH-hcCCCeEEEEEeCHH
Confidence 211245555554 479999999996643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.1e-05 Score=85.01 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccC--CCCCCCeeEEEecc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL--PYPSRAFDMAHCSR 290 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~L--Pfpd~sFDlV~~~~ 290 (544)
....+||||||.|.+...++.. ++.++++...-+..+. +.+.+.++ ++.+...++..+ -++++++|.|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4568999999999999999876 6888888665444333 33444555 455554454322 27789999999876
Q ss_pred cccccccCh--------HHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.= +|+... ..++..+.++|||||.+.+.+.
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 44 776533 4899999999999999999853
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.1e-05 Score=79.02 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=77.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHc----CC-Ce-EEEEeccccCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PA-LIGVMASIRLPYP 279 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~er----gv-~~-~~~v~d~~~LPfp 279 (544)
..+.++...+.|+ .|||-=||||++.....-.|+.+++. |+...+++-|+.+ ++ +. .+...|+..+|++
T Consensus 187 R~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~---Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 187 RAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIGS---DIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEeec---chHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC
Confidence 3445555555555 89999999999988877666666555 5566666555433 22 23 2344499999999
Q ss_pred CCCeeEEEeccccc-----ccc--cCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLI-----PWG--QYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~-----h~~--~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||.|.+-.-.- .-. ++. ..+|..+.++||+||++++..|
T Consensus 262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99999999833110 111 111 6889999999999999999987
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.1e-06 Score=83.46 Aligned_cols=96 Identities=22% Similarity=0.268 Sum_probs=69.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 009069 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d 298 (544)
+..+||+|||.|-.+.---.-.+.+.|+ ....+..++..+.. ...++|+..+|+.+.+||.+++..++||+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~-----c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDL-----CTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecch-----hhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 4489999999996432111113444444 33344444444432 56778999999999999999999999999875
Q ss_pred h--HHHHHHHHHcccCCcEEEEEe
Q 009069 299 D--GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 299 ~--~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
. ..+++|+.|+|||||...+-.
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 5 689999999999999877653
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.9e-05 Score=76.50 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
...++.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++......+.. ..++.+..+|...++++
T Consensus 15 ~~~~~~iv~~~~~~~~--~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDG--DPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCCCc--CeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch
Confidence 3455667776655544 48999999999999999987 477788866555433322211 23577888898887765
Q ss_pred CCCeeEEEecccc
Q 009069 280 SRAFDMAHCSRCL 292 (544)
Q Consensus 280 d~sFDlV~~~~~l 292 (544)
.||.|+++..+
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 48999998865
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.2e-05 Score=77.46 Aligned_cols=95 Identities=23% Similarity=0.241 Sum_probs=70.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-ccCCCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS-IRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~-~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
....+|+|.|.|..+..+... .+.+++++...+.+++...+ .| +....+|. +..| . -|+|++-.++|||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~~P--~--~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQDTP--K--GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceecccccccCC--C--cCeEEEEeecccC
Confidence 468999999999999998875 67788885544433333332 23 34444443 3344 3 3599999999999
Q ss_pred ccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 296 GQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.++. ..+|+++...|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9877 8999999999999999999864
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00035 Score=69.41 Aligned_cols=97 Identities=15% Similarity=0.204 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEE-ecccc-CC-CCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP--ALIGV-MASIR-LP-YPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~--~~~~v-~d~~~-LP-fpd~sFDlV~~ 288 (544)
.++||+||.+.|..+..|+.. .++++|+++.....++..+++ -|+. +.+.. +|+.. +. ...++||+|+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 348999999999999888764 378888877666555554443 3442 44444 34322 22 45789999985
Q ss_pred cccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 289 ~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
- +...+-..+|..+.++|||||.+++..
T Consensus 139 D----adK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 139 D----ADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred e----CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 3 333333789999999999999999973
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00022 Score=72.35 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEe--
Q 009069 201 ADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVM-- 271 (544)
Q Consensus 201 a~~~i~~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~-- 271 (544)
.++.++.+.+.+... ......+||+|||+|..+..|+.. .++++|.+...+.-+.. .+....+. +.+...
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~e-N~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKE-NAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHH-HHHHHhhcCceEEEeccc
Confidence 455666666655421 122337999999999988888764 56777776554432221 12111222 222211
Q ss_pred --c-cccCCCCCCCeeEEEecccccccccCh-------------------------HHHHHHHHHcccCCcEEEEEeC
Q 009069 272 --A-SIRLPYPSRAFDMAHCSRCLIPWGQYD-------------------------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 272 --d-~~~LPfpd~sFDlV~~~~~l~h~~~d~-------------------------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ ....+...+.+|+++|+.-.+.-.+.. ..++.-+.|.|+|||.+++...
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 233445678999999987543222111 1456778999999999999864
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=73.44 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=56.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
.++.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++......+. ....+.+..+|+..++++
T Consensus 17 i~~~i~~~~~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~--~~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 17 VIQKIVEAANVLEG--DVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS--LYERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHHHHHhcCCCCc--CEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC--cCCcEEEEECchhcCChh--
Confidence 44566666654443 48999999999999999986 57778886655433332221 123577888888888765
Q ss_pred Cee---EEEecccc
Q 009069 282 AFD---MAHCSRCL 292 (544)
Q Consensus 282 sFD---lV~~~~~l 292 (544)
+|| +|+++..+
T Consensus 91 ~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 DFPKQLKVVSNLPY 104 (253)
T ss_pred HcCCcceEEEcCCh
Confidence 466 88877644
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.5e-05 Score=76.39 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=58.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
.++.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++......+. ...+.+..+|...+++++-
T Consensus 30 i~~~i~~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~ 104 (272)
T PRK00274 30 ILDKIVDAAGPQPG--DNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSEL 104 (272)
T ss_pred HHHHHHHhcCCCCc--CeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHc
Confidence 45566666655444 48999999999999999987 57888887765544332221 1467888889888877653
Q ss_pred CeeEEEeccc
Q 009069 282 AFDMAHCSRC 291 (544)
Q Consensus 282 sFDlV~~~~~ 291 (544)
.+|.|+++.-
T Consensus 105 ~~~~vv~NlP 114 (272)
T PRK00274 105 QPLKVVANLP 114 (272)
T ss_pred CcceEEEeCC
Confidence 3688888763
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=74.30 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=66.7
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CC-C----CCCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-Y----PSRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LP-f----pd~sFDlV 286 (544)
++|||||+|+|..+..++.. .++++|.++.....+...+ .+.|+ .+.+..+++.. |+ + .+++||+|
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 48999999999999988863 3688888775554444333 34455 46777776533 22 1 24689999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.-. ...+-..++..+.+.|+|||.+++..
T Consensus 199 FIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 199 FVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 8643 22223688999999999999998863
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.3e-05 Score=80.58 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=72.8
Q ss_pred EEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
.++|+|||.|....++... ++.+++.++..+......... .++ ...+...+....||++++||.+.+..+..|.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEeecccC
Confidence 7999999999888887764 566555544433333322221 122 2344677888999999999999999999776
Q ss_pred ccChHHHHHHHHHcccCCcEEEEE
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
+. ...++.|+.|+++|||+++..
T Consensus 192 ~~-~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 192 PD-LEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred Cc-HHHHHHHHhcccCCCceEEeH
Confidence 64 899999999999999999986
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00034 Score=67.25 Aligned_cols=107 Identities=21% Similarity=0.344 Sum_probs=69.0
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh--CC-----------cEEEeCCccchHHHHHHHHHHcCC--CeEEEEe
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMS--RN-----------ILAVSFAPRDTHEAQVQFALERGV--PALIGVM 271 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~--~~-----------V~~vdisp~dls~a~v~~A~ergv--~~~~~v~ 271 (544)
.+..+...+.+. .|||--||+|++....+. .+ +.+.|+++..+..+..+.. ..++ .+.+...
T Consensus 19 ~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~-~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 19 ALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLK-AAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHH-HTT-CGGEEEEE-
T ss_pred HHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHH-hcccCCceEEEec
Confidence 344554444444 899999999998866543 23 4589998887765555433 3344 3678888
Q ss_pred ccccCCCCCCCeeEEEecccccccccCh----------HHHHHHHHHcccCCcEEEEE
Q 009069 272 ASIRLPYPSRAFDMAHCSRCLIPWGQYD----------GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 272 d~~~LPfpd~sFDlV~~~~~l~h~~~d~----------~~~L~Ei~RVLKPGG~Lvis 319 (544)
|+..+++.++++|.|+++. +|.... ..+++++.|+|++...+++.
T Consensus 96 D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 96 DARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp -GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred chhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999998889999999987 443211 36789999999995555555
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00034 Score=67.64 Aligned_cols=89 Identities=17% Similarity=0.063 Sum_probs=59.7
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
-++++|+|+|||||.++...+-. .|.++|+++..+ +...+.+.+.+..+.+.+.|..+.. ..||.|+.+.-+-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG 119 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFG 119 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCc
Confidence 35668999999999776655443 689999988655 3444455555567899988887754 5689999887543
Q ss_pred ccccCh-HHHHHHHHHc
Q 009069 294 PWGQYD-GLYLIEVDRV 309 (544)
Q Consensus 294 h~~~d~-~~~L~Ei~RV 309 (544)
-+.... ..++..+.++
T Consensus 120 ~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 120 SQRRHADRPFLLKALEI 136 (198)
T ss_pred cccccCCHHHHHHHHHh
Confidence 232211 4555555554
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00043 Score=68.29 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=76.5
Q ss_pred CEEEEeCCCCcHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC---CCCeeEEEeccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP---SRAFDMAHCSRCLIPW 295 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp---d~sFDlV~~~~~l~h~ 295 (544)
-++|||||=+......-.. ..|+.+|+.+.. -.+.+.|....|.| ++.||+|.|+.+|...
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSLVLNFV 117 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEEEEeeC
Confidence 4799999975543322211 257777774421 12344566666654 6789999999999655
Q ss_pred ccCh---HHHHHHHHHcccCCcE-----EEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeec
Q 009069 296 GQYD---GLYLIEVDRVLRPGGY-----WILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKK 362 (544)
Q Consensus 296 ~~d~---~~~L~Ei~RVLKPGG~-----Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~ 362 (544)
+ ++ ..++..+.+.|+|+|. |+|+.|..-- .+. . +- ..+.+..+.+.+||..+..+.
T Consensus 118 P-~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv-~NS-R-y~-------~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 118 P-DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV-TNS-R-YM-------TEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred C-CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh-hcc-c-cc-------CHHHHHHHHHhCCcEEEEEEe
Confidence 5 35 7899999999999999 8888762110 000 0 01 124567889999998887543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00025 Score=69.84 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=66.5
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CC-----CCCCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-----YPSRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LP-----fpd~sFDlV 286 (544)
++||+||+++|..+..|++. .++++++++.....++ +...+.|. .+.+..+++.. ++ ...++||+|
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 38999999999999999864 5788888775443333 33344444 47777777543 12 124689999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.-. ...+-..++..+.+.|+|||.+++..
T Consensus 126 FiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 126 FIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 8643 22223678999999999999999984
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00034 Score=72.55 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEeccccCCCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYP 279 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~LPfp 279 (544)
..++.+.+.+....+. +|||||||+|.++..|++. .++++|+++.++......++... ..++.+..+|+...+++
T Consensus 23 ~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 3556676666555444 8999999999999999886 58888888766654444333221 23577888888776653
Q ss_pred CCCeeEEEecccc
Q 009069 280 SRAFDMAHCSRCL 292 (544)
Q Consensus 280 d~sFDlV~~~~~l 292 (544)
.||+|+++.-+
T Consensus 101 --~~d~VvaNlPY 111 (294)
T PTZ00338 101 --YFDVCVANVPY 111 (294)
T ss_pred --ccCEEEecCCc
Confidence 68999987754
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00025 Score=72.55 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCCc----HHHHHHhhC---------CcEEEeCCccchHHHHHH----HHHHcCC----------------
Q 009069 218 SIRTAIDTGCGVA----SWGAYLMSR---------NILAVSFAPRDTHEAQVQ----FALERGV---------------- 264 (544)
Q Consensus 218 ~~r~VLDIGCGtG----~~a~~La~~---------~V~~vdisp~dls~a~v~----~A~ergv---------------- 264 (544)
..-+|+-.||++| ++|..|.+. .|.++||+...+..|..- ....+++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3557999999999 555555543 467778866555443321 0000111
Q ss_pred ---------CeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 265 ---------PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 265 ---------~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+.|...+....++..+.||+|+|..+++.+.... ..++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 13344444433343556799999999998888644 789999999999999999964
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00092 Score=68.67 Aligned_cols=141 Identities=21% Similarity=0.315 Sum_probs=93.9
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccC---CCCCCCeeE
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRL---PYPSRAFDM 285 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~L---Pfpd~sFDl 285 (544)
+..-+||||.||.|......++. .+...|+++..+...+ +.+.++|.. +.|..+|+... .--+-..++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 34457999999999776655543 4677788886664333 566677764 37877775432 212345799
Q ss_pred EEecccccccccCh--HHHHHHHHHcccCCcEEEEEeCCCCccc---------cc--cCCCcchhhhHhhhhhHHHHHHh
Q 009069 286 AHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNWES---------HW--KGWNRTTEDLKSEQNGIETIARS 352 (544)
Q Consensus 286 V~~~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvis~pp~~w~~---------~~--~~w~~t~e~L~~~~~~ie~la~~ 352 (544)
++.+..++-++++. ...|.-+.+.|.|||++|..+.|..-.. +. ..|.- ....+.+|..+.+.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvM----RrRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVM----RRRSQAEMDQLVEA 288 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEE----EecCHHHHHHHHHH
Confidence 99999887777654 5678999999999999999975422110 10 12321 12245678889999
Q ss_pred hcceeeeeec
Q 009069 353 LCWKKLIQKK 362 (544)
Q Consensus 353 l~w~~v~~~~ 362 (544)
.+|+++.+.-
T Consensus 289 aGF~K~~q~I 298 (311)
T PF12147_consen 289 AGFEKIDQRI 298 (311)
T ss_pred cCCchhhhee
Confidence 9998776543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00023 Score=75.06 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=67.0
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIR-LPYPSRAFDMAHC 288 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e----rgv~~~~~v~d~~~-LPfpd~sFDlV~~ 288 (544)
..++||.||+|.|..+.++++. .++++|+++..+..+...+... ....+.+.+.|... +...+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4568999999999999988774 4778888665444333222111 12356677776543 3334678999998
Q ss_pred cccccccccC------hHHHHH-HHHHcccCCcEEEEEe
Q 009069 289 SRCLIPWGQY------DGLYLI-EVDRVLRPGGYWILSG 320 (544)
Q Consensus 289 ~~~l~h~~~d------~~~~L~-Ei~RVLKPGG~Lvis~ 320 (544)
-. ..++... ...+++ .+.+.|+|||.|++..
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 53 2222111 146787 8999999999998864
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00023 Score=67.44 Aligned_cols=115 Identities=15% Similarity=0.037 Sum_probs=78.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-----C
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-----Y 278 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP-----f 278 (544)
..+.+...+.. .++.-||++|.|||-++.+++++++.-.++.....+........+....+.+..+|+..+. +
T Consensus 36 lA~~M~s~I~p--esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 36 LARKMASVIDP--ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHHHhccCc--ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhc
Confidence 33444444433 3344799999999999999999865333333333344444444455555567777765554 5
Q ss_pred CCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 279 PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+..||.|+|..-+..++-.. .++|+++...|++||.|+.-.
T Consensus 114 ~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 114 KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 678899999977665555433 688999999999999998864
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00023 Score=74.48 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
..++|||+|||+|.+...-++. .|.+++.+. +..-..+.+..++.. +.+..+..+.+.+|-.+.|+|++-..-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 3558999999999888877776 567777654 445566677777764 455556666666667899999984432
Q ss_pred cccc-cCh-HHHHHHHHHcccCCcEEEE
Q 009069 293 IPWG-QYD-GLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 293 ~h~~-~d~-~~~L~Ei~RVLKPGG~Lvi 318 (544)
..+. +.. ..+|..=.+-|+|||.++=
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 1111 111 4556666789999998754
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=63.43 Aligned_cols=100 Identities=11% Similarity=0.004 Sum_probs=62.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CC-C-C-CCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-Y-P-SRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LP-f-p-d~sFDlV~~~ 289 (544)
+.+|||++||+|.++..++.++ ++++|.++..+...+.+.. ..+. .+.+...|... +. + . ...||+|+.-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~-~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLA-LLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 3489999999999999999874 6777887655543333322 3333 35677777633 22 1 1 2247888876
Q ss_pred ccccccccChHHHHHHHHH--cccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDR--VLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~R--VLKPGG~Lvis~p 321 (544)
.-+.. .....++..+.. +|+++|.+++...
T Consensus 129 PPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN--GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 63321 112444544433 6899998888754
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00014 Score=73.77 Aligned_cols=152 Identities=15% Similarity=0.153 Sum_probs=82.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh-hC--CcEEEeCCccchHHHHHHHHH---------------HcC--
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLM-SR--NILAVSFAPRDTHEAQVQFAL---------------ERG-- 263 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La-~~--~V~~vdisp~dls~a~v~~A~---------------erg-- 263 (544)
.++.+.+.+......+.++||||||.-..-..-+ +. .|+..|.++....+-+..+.. ..|
T Consensus 42 ~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 42 FLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 4455556665444456799999999854322212 22 688888877544322211110 001
Q ss_pred -------------CCeEEEEeccccC-CCCC-----CCeeEEEecccccccccCh---HHHHHHHHHcccCCcEEEEEeC
Q 009069 264 -------------VPALIGVMASIRL-PYPS-----RAFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 264 -------------v~~~~~v~d~~~L-Pfpd-----~sFDlV~~~~~l~h~~~d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ -.+...|..+. |+.. ..||+|++.+|++-...+. ..+++.+.++|||||.|++.+-
T Consensus 122 ~~~~e~e~~lR~~V-k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 122 EKWEEKEEKLRRAV-KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp SGHHHHHHHHHHHE-EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred chhhhHHHHHHHhh-ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 1 12344454443 3332 3599999999998877766 5789999999999999999853
Q ss_pred -CC-CccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 322 -PV-NWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 322 -p~-~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
.. .+.... .....+.-..+.+++..+..++.....
T Consensus 201 l~~t~Y~vG~----~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 201 LGSTYYMVGG----HKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp SS-SEEEETT----EEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred cCceeEEECC----EecccccCCHHHHHHHHHHcCCEEEec
Confidence 11 111110 111122223345677777788865543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00063 Score=64.84 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhCC-----cEEEeCCccchHHHHHHHHHHcCCCeEEEEec--
Q 009069 201 ADAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN-----ILAVSFAPRDTHEAQVQFALERGVPALIGVMA-- 272 (544)
Q Consensus 201 a~~~i~~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~-----V~~vdisp~dls~a~v~~A~ergv~~~~~v~d-- 272 (544)
+...+.++.+... +..+...+|||+||++|.|+..+++++ +.++|+.+.... ..+....+|
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~ 73 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDIT 73 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGE
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccc
Confidence 4445566666666 445456799999999999999999875 677777654111 111111111
Q ss_pred ----cccCC--C--CCCCeeEEEecccccccccC----h-------HHHHHHHHHcccCCcEEEEEeC
Q 009069 273 ----SIRLP--Y--PSRAFDMAHCSRCLIPWGQY----D-------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 273 ----~~~LP--f--pd~sFDlV~~~~~l~h~~~d----~-------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+. + ..+.||+|+|-.+. ....+ . ...+.-+.+.|||||.|++...
T Consensus 74 ~~~~~~~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 74 NPENIKDIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp EEEHSHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhhHHHhhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 11111 1 12689999996632 11111 1 2344556678999999999764
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00022 Score=77.98 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=60.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LPfpd~sFDlV~~ 288 (544)
...|||||||+|.+....++. .|.+++-++......+ +....++ -.+.++.+|.+....+. ..|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 357999999999887655443 4677777664332222 2323443 35888888988887654 8999998
Q ss_pred cccccccccCh--HHHHHHHHHcccCCcEEE
Q 009069 289 SRCLIPWGQYD--GLYLIEVDRVLRPGGYWI 317 (544)
Q Consensus 289 ~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lv 317 (544)
-..- .+..+. ...|....|.|||||.++
T Consensus 265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 3322 233222 567899999999998775
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0018 Score=62.38 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=71.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-C----cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-N----ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~----V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
...+||||||+|.....|++. + ..++|+.|... ++..+-|+.+++.+..++.|...- ...++.|+++.+.-+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 447999999999998888876 2 56788888655 455566766777766666664322 2238899999877554
Q ss_pred ccccCh--------------------HHHHHHHHHcccCCcEEEEEeCC
Q 009069 294 PWGQYD--------------------GLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 294 h~~~d~--------------------~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+-.+++ ..++..+..+|.|.|.|++..-.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 322211 25677788889999999998653
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00071 Score=66.39 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=64.4
Q ss_pred HHHHHhc--ccCCCCCEEEEeCCCCcHHHHHHhh----CCcEEEeCCccchHHHHHHHHHHc---------------CCC
Q 009069 207 DIGKLIN--LKDGSIRTAIDTGCGVASWGAYLMS----RNILAVSFAPRDTHEAQVQFALER---------------GVP 265 (544)
Q Consensus 207 ~L~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~----~~V~~vdisp~dls~a~v~~A~er---------------gv~ 265 (544)
.+.+.|. +.+|. ++||+|.|+|.++..++. .+...++| +..+..++.+.++ ...
T Consensus 71 ~~le~L~~~L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GI---Eh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 71 TALEYLDDHLQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGI---EHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHhhccCc--ceeecCCCccHHHHHHHHHhcCCCccccch---hhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 3444554 45544 899999999987766653 34422333 3333333333221 123
Q ss_pred eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 266 ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 266 ~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..++++|....--+...||.||+.... ....+++...|+|||.+++-.
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 556677776666667889999997533 345577788899999998853
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00057 Score=67.07 Aligned_cols=128 Identities=16% Similarity=0.134 Sum_probs=77.4
Q ss_pred ceeeecCCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh--C--CcEEEeCCccchHHH
Q 009069 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS--R--NILAVSFAPRDTHEA 254 (544)
Q Consensus 179 ~w~~~~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~--~--~V~~vdisp~dls~a 254 (544)
...+..|-.|.+.-...+|..+...--.++.+.+ .++ .+|||+-||.|.|+..+++ + .|.++|+.|.... .
T Consensus 66 t~~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v--~~~--e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~-~ 140 (200)
T PF02475_consen 66 TIHKENGIRFKVDLSKVYFSPRLSTERRRIANLV--KPG--EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE-Y 140 (200)
T ss_dssp EEEEETTEEEEEETTTS---GGGHHHHHHHHTC----TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH-H
T ss_pred EEEEeCCEEEEEccceEEEccccHHHHHHHHhcC--Ccc--eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH-H
Confidence 3345555556655556666666554444555542 344 4999999999999999987 3 4888999886553 4
Q ss_pred HHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEE
Q 009069 255 QVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWI 317 (544)
Q Consensus 255 ~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lv 317 (544)
..+.+..+++. +....+|...+.. .+.||-|++.. +.....+|..+.+++|+||.+-
T Consensus 141 L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 141 LKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 44445555553 5667788777654 78999998744 3334579999999999999863
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00077 Score=72.39 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=67.1
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
.+|||++||+|.++..++.. .|+++|+++..+..+..+. ..+++. ..+...|+..+....+.||+|+...
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~-~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNL-ELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 37999999999999998753 4788898876665444333 334443 4466677655322145799999854
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEe
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+ ..+..++..+.+.+++||.+.++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 2 234678888888899999999984
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00021 Score=69.84 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=76.1
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhcccC----CCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC
Q 009069 190 FPGGGTMFPRGADAYIDDIGKLINLKD----GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG 263 (544)
Q Consensus 190 F~g~g~~F~~ga~~~i~~L~~lL~l~~----g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~erg 263 (544)
|.|.|.||--..+.+ .+++.+.. ....++||+|+|.|-.+..++.. .|.+++++ ..++......+
T Consensus 84 ~lgrGsMFifSe~QF----~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS-----~tMr~rL~kk~ 154 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQF----RKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELS-----WTMRDRLKKKN 154 (288)
T ss_pred ccccCceEEecHHHH----HHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhh-----HHHHHHHhhcC
Confidence 677788876555544 33443331 23468999999999999988875 45555554 44444444444
Q ss_pred CCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccC-CcEEEEE
Q 009069 264 VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP-GGYWILS 319 (544)
Q Consensus 264 v~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKP-GG~Lvis 319 (544)
.++. ......--+-+||+|.|...+ .-..++..+|+++.-+|+| +|..|++
T Consensus 155 ynVl----~~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 155 YNVL----TEIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred Ccee----eehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 3322 121222234469999998877 4444589999999999999 8988876
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0047 Score=59.91 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=60.9
Q ss_pred EEEEeCCCCcHHHHHHh----hCCcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 221 TAIDTGCGVASWGAYLM----SRNILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La----~~~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+++|||+|.|--+.-|+ +..++.+|-..+-.. .....+.+-+.. +.+....++. +....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 79999999995444443 336777776543221 122233344554 7777777777 5567889999996543
Q ss_pred ccChHHHHHHHHHcccCCcEEEEE
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
....++.-+...|++||.+++-
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 3468888899999999998886
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0011 Score=61.06 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=56.3
Q ss_pred CCEEEEeCCCCcH-HHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC-CCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCGVAS-WGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP-SRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCGtG~-~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp-d~sFDlV~~~~~l~h~~ 296 (544)
+.+|||||||+|. ++..|++.|..++.+ |+++..++.+.+.++ .+.+.|.....+. -..+|+|++.+.-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirpp---- 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRPP---- 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCCC----
Confidence 4589999999995 898999886444444 444456677777664 4445565444332 4569999987722
Q ss_pred cChHHHHHHHHHcccCCcEEEEE
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
.+....+.++.+-+ |.-++|.
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEE
Confidence 22344555555543 4556665
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00052 Score=71.05 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh-----------CCcEEEeCCccchHHHHHHHHHHcCCC---e
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-----------RNILAVSFAPRDTHEAQVQFALERGVP---A 266 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-----------~~V~~vdisp~dls~a~v~~A~ergv~---~ 266 (544)
.....+.+.+++....+ .+|||.+||+|.|...+.+ ..+.++|+++....-+...+.. ++.. .
T Consensus 31 P~~i~~l~~~~~~~~~~--~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~ 107 (311)
T PF02384_consen 31 PREIVDLMVKLLNPKKG--DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNI 107 (311)
T ss_dssp -HHHHHHHHHHHTT-TT--EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGC
T ss_pred HHHHHHHHHhhhhcccc--ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccc
Confidence 45566677777754443 3899999999999877765 2567788866555444444433 2321 2
Q ss_pred EEEEeccccCCCC--CCCeeEEEeccccccc--cc---------------Ch---HHHHHHHHHcccCCcEEEEEeC
Q 009069 267 LIGVMASIRLPYP--SRAFDMAHCSRCLIPW--GQ---------------YD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 267 ~~~v~d~~~LPfp--d~sFDlV~~~~~l~h~--~~---------------d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+...|....+.. ...||+|+++.-+... .. .. ..++..+.+.|++||++++..|
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 3556665444433 4789999997644322 00 00 2588889999999999988876
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00078 Score=68.22 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=63.2
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CCC------CCCCeeE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LPY------PSRAFDM 285 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LPf------pd~sFDl 285 (544)
++||+||+++|..+..|+.. .+++++..+.....+...+ .+.|+ .+.+..+++.. |+- ..++||+
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~-~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI-QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 38999999999888888753 4778888664443333222 23343 46677666433 221 1368999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
|+.-. ....-..++..+.+.|+|||.+++.
T Consensus 160 iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 160 IFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 98643 2222367888889999999998886
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=69.68 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=62.5
Q ss_pred EEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccC-C-CC--------------CC
Q 009069 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL-P-YP--------------SR 281 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~L-P-fp--------------d~ 281 (544)
+|||++||+|.++..|++. .++++|+++.++..+.. .+..+++ ++.+..+|+... + +. ..
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY 287 (362)
T ss_pred eEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence 6999999999999988875 68889998877755443 3434455 577777776442 1 10 22
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
.||+|+.-.-. ..-...++..+. +|++.++++-.|
T Consensus 288 ~~D~v~lDPPR---~G~~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 288 NFSTIFVDPPR---AGLDDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred CCCEEEECCCC---CCCcHHHHHHHH---ccCCEEEEEeCH
Confidence 58999975532 111134555554 478888888654
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0017 Score=69.12 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP 277 (544)
.+..++.+.+.+.... .+|||++||+|.++..|++. .++++|+++.++..+..+ +..+++ ++.+..+|....-
T Consensus 183 ~~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n-~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 183 NIKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYN-IAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEEcCHHHHH
Confidence 3444455555543222 25999999999999998875 688899988777555543 334455 5677777764421
Q ss_pred --------C---C-----CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 278 --------Y---P-----SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 278 --------f---p-----d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+ . ...||+|+.-.-...+ ...++..+. +|++.++++-.|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~---~~~~l~~l~---~~~~ivYvsC~p 313 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGL---DPDTCKLVQ---AYERILYISCNP 313 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCCCCCC---cHHHHHHHH---cCCcEEEEEcCH
Confidence 1 0 1237999875522111 134555444 489999999654
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0025 Score=70.18 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=66.5
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCCCCeeEEE---
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLP-YPSRAFDMAH--- 287 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LP-fpd~sFDlV~--- 287 (544)
.+.+|||+++|.|.=+.++++. .+++.|+++.-+...+ +.+.+-|+. +.+...|...+. ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 3448999999999877777664 3677888665443222 333344654 455556665543 3346799999
Q ss_pred -ecccc--c-------ccccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 288 -CSRCL--I-------PWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 -~~~~l--~-------h~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+..- . .|..+ +..+|..+.+.|||||+++.++-
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 55321 1 12111 14788999999999999999864
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0031 Score=61.97 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=72.8
Q ss_pred CcccHHHHHHHHHHHhcc-cCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEE
Q 009069 197 FPRGADAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGV 270 (544)
Q Consensus 197 F~~ga~~~i~~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v 270 (544)
+...+...+.+|.+...+ .. +.+|+|+|+-.|+|+..++++ .|.++|+.|.+.. ..+.+.+
T Consensus 25 yRSRAa~KL~el~~k~~i~~~--~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq 91 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKP--GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQ 91 (205)
T ss_pred ccchHHHHHHHHHHhcCeecC--CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEe
Confidence 344455555566665543 33 348999999999999998876 2899999776542 2356666
Q ss_pred eccccCC--------CCCCCeeEEEecccc--------cccccCh--HHHHHHHHHcccCCcEEEEEeC
Q 009069 271 MASIRLP--------YPSRAFDMAHCSRCL--------IPWGQYD--GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 271 ~d~~~LP--------fpd~sFDlV~~~~~l--------~h~~~d~--~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|...-+ +....+|+|+|-.+- .|...-. ..++.-+.++|+|||.|++...
T Consensus 92 ~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 92 GDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred eeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 6654433 234457999973332 1211111 3566667789999999999864
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0022 Score=69.91 Aligned_cols=100 Identities=24% Similarity=0.258 Sum_probs=78.9
Q ss_pred EEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
++|-+|||.-.+...+.+- .|+.+|+|+..+...++..+.+ ..-..+...|...+.|++++||+|+.-..++++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-CcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 7999999999998888775 5777888777665555444422 23467788899999999999999999999988776
Q ss_pred ChH---------HHHHHHHHcccCCcEEEEEeC
Q 009069 298 YDG---------LYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 298 d~~---------~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.. ..+.++.|+|+|||.++...-
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 542 457899999999999887643
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0025 Score=65.75 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=67.3
Q ss_pred cCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC---------CCeEEEEecccc-CCCCC
Q 009069 215 KDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPS 280 (544)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg---------v~~~~~v~d~~~-LPfpd 280 (544)
..+..++||-||-|.|..++.+++. .++.++|++. .++.+++.. ..+.+...|... +.-..
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~-----Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPA-----VIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHH-----HHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 3444569999999999999999986 5778888553 344444321 234556555433 22233
Q ss_pred CCeeEEEecccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 281 RAFDMAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+||+|++-. ..+.... ...+++.+.|.|+++|.++...
T Consensus 148 ~~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 148 EKFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CcCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 4899999733 2231110 1689999999999999999983
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0049 Score=63.27 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=57.3
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEE--Eec--cccCCCCCCCeeEEEe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIG--VMA--SIRLPYPSRAFDMAHC 288 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~--v~d--~~~LPfpd~sFDlV~~ 288 (544)
..++|||+|+|.|.....+.+. .++++|.++.++..+. .+. +........ ... ....++. ..|+|++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~-~l~-~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK-RLL-RAGPNNRNAEWRRVLYRDFLPFP--PDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH-HHH-hcccccccchhhhhhhcccccCC--CCcEEEE
Confidence 3458999999999765555442 5667777665543222 122 222111100 001 1122332 2399999
Q ss_pred cccccccccCh-HHHHHHHHHcccCCcEEEEEeCC
Q 009069 289 SRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 289 ~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+++|..+.+.. ..+++.+.+.+.+ +|||+.|.
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 99998888733 5566666666655 89888773
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0028 Score=64.11 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=67.1
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc----CCCeEEEEeccccC-CCCCC-CeeEE
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRL-PYPSR-AFDMA 286 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~er----gv~~~~~v~d~~~L-Pfpd~-sFDlV 286 (544)
...++||=||-|.|..+..+.+. .++++++++.-+..+..-+.... ..++.+...|.... .-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 34668999999999999999875 47888887754443332222211 24677777775332 12233 89999
Q ss_pred EecccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 287 HCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 287 ~~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.-..- +.... ...+++.+.+.|+|||.+++..
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 973322 22111 1689999999999999999975
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0055 Score=68.42 Aligned_cols=75 Identities=16% Similarity=0.055 Sum_probs=39.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC------------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC-----CCCCC
Q 009069 219 IRTAIDTGCGVASWGAYLMSR------------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSR 281 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~------------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L-----Pfpd~ 281 (544)
..+|||.|||+|.|...++++ .+.++|+++..+..+...+.........+...+.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 458999999999998877643 2345555443333222222211112223332321111 11125
Q ss_pred CeeEEEeccccc
Q 009069 282 AFDMAHCSRCLI 293 (544)
Q Consensus 282 sFDlV~~~~~l~ 293 (544)
.||+|+++.-+.
T Consensus 112 ~fD~IIgNPPy~ 123 (524)
T TIGR02987 112 LFDIVITNPPYG 123 (524)
T ss_pred cccEEEeCCCcc
Confidence 799999977443
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0031 Score=60.98 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=71.0
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC--CeEEEEecc
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMAS 273 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~ 273 (544)
...+..-+.+-.++....-.+.++||+-||+|.++...+.+| ++.+|.++........+.. .-+. .+.+...|.
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~-~l~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLE-KLGLEDKIRVIKGDA 101 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHH-HHT-GGGEEEEESSH
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHH-HhCCCcceeeeccCH
Confidence 344555556666665331234489999999999999999885 6777776644432222222 2232 255666663
Q ss_pred c-cC---CCCCCCeeEEEecccccccccCh--HHHHHHHH--HcccCCcEEEEEeC
Q 009069 274 I-RL---PYPSRAFDMAHCSRCLIPWGQYD--GLYLIEVD--RVLRPGGYWILSGP 321 (544)
Q Consensus 274 ~-~L---Pfpd~sFDlV~~~~~l~h~~~d~--~~~L~Ei~--RVLKPGG~Lvis~p 321 (544)
. .+ ......||+|+.-. ++.... ..++..+. .+|+++|.+++...
T Consensus 102 ~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 2 22 12468899999877 444432 45666666 78999999999864
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0078 Score=61.52 Aligned_cols=92 Identities=11% Similarity=0.058 Sum_probs=63.8
Q ss_pred cCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHH---------cCCCeEEEEeccccCCCCCCCe
Q 009069 215 KDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE---------RGVPALIGVMASIRLPYPSRAF 283 (544)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~e---------rgv~~~~~v~d~~~LPfpd~sF 283 (544)
.-+..++||=||.|.|..++.+++. .|+.+||++..+ +++++ ....+.+.. .. ..-..++|
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv-----~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~f 140 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKIL-----DSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKY 140 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHH-----HHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcC
Confidence 3445679999999999999999987 588888866444 33332 123344432 11 11124689
Q ss_pred eEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|+|+.-.. .+..+++.+.|.|+|||.++...
T Consensus 141 DVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 141 DLIICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CEEEEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 99997532 23678899999999999999964
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00028 Score=66.13 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=61.1
Q ss_pred EEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccCh-H
Q 009069 222 AIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-G 300 (544)
Q Consensus 222 VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~ 300 (544)
.+-||||.=.+ .-+...+|+.. ...+.++.-.....+|.+++.|+|+|.++++|+..+. .
T Consensus 6 kv~ig~G~~r~-----npgWi~~d~ed--------------~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~ 66 (185)
T COG4627 6 KVKIGAGGKRV-----NPGWIITDVED--------------RPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGT 66 (185)
T ss_pred EEEEecccccc-----CCCceeeehhc--------------ccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHH
Confidence 56788886433 12455556522 1122233223556789999999999999999998755 6
Q ss_pred HHHHHHHHcccCCcEEEEEeCCCCc
Q 009069 301 LYLIEVDRVLRPGGYWILSGPPVNW 325 (544)
Q Consensus 301 ~~L~Ei~RVLKPGG~Lvis~pp~~w 325 (544)
.++++++|+|||||+|-++.|..+.
T Consensus 67 ~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 67 SALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred HHHHHHHHHhCcCcEEEEEcCCcch
Confidence 8999999999999999999885543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.007 Score=66.08 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=76.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC-
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYP- 279 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfp- 279 (544)
+++...+.++...++ ++||+=||.|.|+..|+++ .|+++++++.++..++. .|..+++ ++.|..+++++..-.
T Consensus 281 l~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~-NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 281 LYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQE-NAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHHhhcCCC--EEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHH-HHHHcCCCcEEEEeCCHHHHhhhc
Confidence 334444555444444 8999999999999999976 79999999988865554 4555555 588888887766533
Q ss_pred --CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCC
Q 009069 280 --SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 280 --d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
...||.|+.-.-. .--...+++.+.+ ++|-..+++|-+|.
T Consensus 358 ~~~~~~d~VvvDPPR---~G~~~~~lk~l~~-~~p~~IvYVSCNP~ 399 (432)
T COG2265 358 WEGYKPDVVVVDPPR---AGADREVLKQLAK-LKPKRIVYVSCNPA 399 (432)
T ss_pred cccCCCCEEEECCCC---CCCCHHHHHHHHh-cCCCcEEEEeCCHH
Confidence 3578999874422 1111355555554 57888999996654
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.045 Score=57.91 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=59.8
Q ss_pred CCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
.+.++|||||++|.|+..|.+++..++.++...++ . .......+.....+..+...+.+.+|+++|-.+ .
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~----~-~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA----Q-SLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC----H-hhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 45699999999999999999997544444211111 1 112234566666665444323678999999554 3
Q ss_pred ChHHHHHHHHHcccCC--cEEEEE
Q 009069 298 YDGLYLIEVDRVLRPG--GYWILS 319 (544)
Q Consensus 298 d~~~~L~Ei~RVLKPG--G~Lvis 319 (544)
.|...+.-+.+-|..| ..+|+.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEE
Confidence 5677777777777666 455554
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.012 Score=60.08 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
..++.|.+.+....++ +||+||+|.|.++..|+++ .++++++++.....-...++ ...+..+..+|+....+++
T Consensus 17 ~v~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 17 NVIDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh
Confidence 3467777777766644 8999999999999999997 57888886643322221111 2346788888999888876
Q ss_pred C-CeeEEEecccc
Q 009069 281 R-AFDMAHCSRCL 292 (544)
Q Consensus 281 ~-sFDlV~~~~~l 292 (544)
- .++.|+++.-.
T Consensus 93 l~~~~~vVaNlPY 105 (259)
T COG0030 93 LAQPYKVVANLPY 105 (259)
T ss_pred hcCCCEEEEcCCC
Confidence 4 68999988743
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=61.53 Aligned_cols=102 Identities=9% Similarity=0.034 Sum_probs=63.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEecccc----CCC--CCCC
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERGVPALI--GVMASIR----LPY--PSRA 282 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~ergv~~~~--~v~d~~~----LPf--pd~s 282 (544)
+..++|+|||.|.=+..|++. .+..+|||...+..+..++.......+.+ ..+|... ++- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 337999999999765555432 36788887777765555554233223333 4444322 321 1234
Q ss_pred eeEEEecc-cccccccCh-HHHHHHHHH-cccCCcEEEEEe
Q 009069 283 FDMAHCSR-CLIPWGQYD-GLYLIEVDR-VLRPGGYWILSG 320 (544)
Q Consensus 283 FDlV~~~~-~l~h~~~d~-~~~L~Ei~R-VLKPGG~Lvis~ 320 (544)
..+++.-. .+-.+.... ..+|+++.+ .|+|||.|+|..
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 57777654 443444322 689999999 999999999974
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0051 Score=60.67 Aligned_cols=120 Identities=15% Similarity=0.112 Sum_probs=61.3
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHH--HHHHHH----HcCC
Q 009069 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEA--QVQFAL----ERGV 264 (544)
Q Consensus 195 ~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a--~v~~A~----ergv 264 (544)
..|++-....+..+.+.+.+..++ ..+|||||.|......+-. ...++++.+.-...+ +.+... ..+.
T Consensus 21 ~~YGEi~~~~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred cceeecCHHHHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666666677777777666555 9999999999765444322 367777766322111 111111 1122
Q ss_pred ---CeEEEEeccccCCCCC---CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEE
Q 009069 265 ---PALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 265 ---~~~~~v~d~~~LPfpd---~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvi 318 (544)
++.+..+|....++.. ..-|+|+++... |.++....|.+...-||+|-++|-
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 3445555543322111 236999998754 444345667788888988877654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.016 Score=62.53 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=69.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEecccc-CC---CCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIR-LP---YPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~-LP---fpd~sFDlV~~ 288 (544)
+++|||+=|=||.|+.+.+.. .++.||+|...+.-+..++.+ +++ .+.++++|+.. +. -...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L-Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL-NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh-cCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 558999999999999998876 467777777666555544443 343 36788877533 22 23458999997
Q ss_pred cccccc------c--ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCLIP------W--GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~h------~--~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-.--.- | ..+-..++..+.++|+|||.++++..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 321100 0 01114788899999999999999975
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.004 Score=58.01 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=54.4
Q ss_pred CCCEEEEeCCCCcHHHHHH--hh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 218 SIRTAIDTGCGVASWGAYL--MS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~L--a~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
++.+++|+|||.|-+.... .+ ..+.++||++..+ +-..+.+.+-.+.+.+.+++...+-+..+.||.++.+.-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 4668999999999665333 22 3688899987555 3333445555677788889988888888999999987744
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0081 Score=61.21 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=59.1
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPS 280 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LPfpd 280 (544)
.++.|.+-.++++++ .||++|.|||.++..|+++ .|.++++++.++.+-..++..... -...+.++|....++|
T Consensus 46 v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 445666666666665 9999999999999999987 688888888777655443321111 1255666777666554
Q ss_pred CCeeEEEecccc
Q 009069 281 RAFDMAHCSRCL 292 (544)
Q Consensus 281 ~sFDlV~~~~~l 292 (544)
.||.++++.-.
T Consensus 123 -~fd~cVsNlPy 133 (315)
T KOG0820|consen 123 -RFDGCVSNLPY 133 (315)
T ss_pred -ccceeeccCCc
Confidence 59999986633
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.021 Score=56.93 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=64.7
Q ss_pred EEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccc-C-----CCCCCCeeEEE
Q 009069 221 TAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIR-L-----PYPSRAFDMAH 287 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~-L-----Pfpd~sFDlV~ 287 (544)
+.||||.=||..+..++.. .+.++|+......-. .++....|+. +.+.++.+.. | ....++||+|+
T Consensus 76 ~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237)
T KOG1663|consen 76 RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237)
T ss_pred eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEE
Confidence 8999999999666555543 588899966544333 3444444543 4555554321 1 13578999998
Q ss_pred ecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 288 ~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
. .||-++-..++.++.++||+||.+++.-
T Consensus 155 v----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 155 V----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred E----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 4 3565544789999999999999999973
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.025 Score=58.70 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=53.4
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
++||+|+..+.+ .-..+--.++..|..+|||||+++=.+|-.+. ..+..-....-.++-..+.+..+++.++|+.+.+
T Consensus 258 ~~~d~VvTcfFI-DTa~NileYi~tI~~iLk~GGvWiNlGPLlYH-F~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 258 GSYDVVVTCFFI-DTAHNILEYIDTIYKILKPGGVWINLGPLLYH-FEDTHGVENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CccceEEEEEEe-echHHHHHHHHHHHHhccCCcEEEeccceeee-ccCCCCCcccccccccHHHHHHHHHhcCcEEEEe
Confidence 469999976533 33333468999999999999999998874331 1111111122344455677888999999999887
Q ss_pred e
Q 009069 361 K 361 (544)
Q Consensus 361 ~ 361 (544)
+
T Consensus 336 ~ 336 (369)
T KOG2798|consen 336 R 336 (369)
T ss_pred e
Confidence 6
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.053 Score=53.90 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=60.2
Q ss_pred CCEEEEeCCCCcHHHHHHh----hCCcEEEeCCccchHHHHHH-HHHHcCCC-eEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLM----SRNILAVSFAPRDTHEAQVQ-FALERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La----~~~V~~vdisp~dls~a~v~-~A~ergv~-~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
..+++|||.|.|--+.-|+ +.+++.+|-..+-+ +.++ .+.+-+.+ +.+....++...-...-||+|.|..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 4589999999996655554 23566666544322 2222 33344665 777777777665221129999986543
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEE
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
....++.-+...||+||.++.-
T Consensus 146 -----~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 146 -----SLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred -----chHHHHHHHHHhcccCCcchhh
Confidence 3456777788899999987643
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.012 Score=61.42 Aligned_cols=99 Identities=10% Similarity=0.074 Sum_probs=59.4
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
.++.|||+|||+|.+....++. .|.+++-+. | .+.+.++...+.+. +.++.+..+...+| +..|+|++-..-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-M-AqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-M-AQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-H-HHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 4678999999999877766665 566666533 2 23333344444443 44455556666655 568999985433
Q ss_pred cccccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 293 IPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 293 ~h~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
.-+..+. -+..--+.|.|||.|..+=.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 2222211 12223356899999987654
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.00075 Score=63.73 Aligned_cols=134 Identities=15% Similarity=0.265 Sum_probs=77.0
Q ss_pred CCEEEEeCCCCcHHHHHHhh-C----CcEEEeCCccchHHHHHHHHHHcCC-----CeEEEEec--cccCCCCCCCeeEE
Q 009069 219 IRTAIDTGCGVASWGAYLMS-R----NILAVSFAPRDTHEAQVQFALERGV-----PALIGVMA--SIRLPYPSRAFDMA 286 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-~----~V~~vdisp~dls~a~v~~A~ergv-----~~~~~v~d--~~~LPfpd~sFDlV 286 (544)
++.||++|.|.-.++..|.. . .|..+|= ++.+...++....++. .......+ ..+......+||.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdg--ne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDG--NEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecC--CHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 45899999996555444433 2 3554544 2333333333332221 01000001 11122334689999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeee-eeccEE
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI-QKKDLA 365 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~-~~~~~a 365 (544)
+|+.|+ .+.+..+.+++.|.+.|||.|..++..|. ....|+. ..+..+..+|.... +..+.+
T Consensus 108 laADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPR------------Rg~sL~k----F~de~~~~gf~v~l~enyde~ 170 (201)
T KOG3201|consen 108 LAADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPR------------RGQSLQK----FLDEVGTVGFTVCLEENYDEA 170 (201)
T ss_pred Eeccch-hHHHHHHHHHHHHHHHhCcccceeEecCc------------ccchHHH----HHHHHHhceeEEEecccHhHH
Confidence 999998 55554488999999999999998888872 2223332 33445555665544 444578
Q ss_pred EEeccC
Q 009069 366 IWQKPT 371 (544)
Q Consensus 366 IwqKP~ 371 (544)
||||-.
T Consensus 171 iwqrh~ 176 (201)
T KOG3201|consen 171 IWQRHG 176 (201)
T ss_pred HHHHHH
Confidence 888753
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.082 Score=54.07 Aligned_cols=126 Identities=18% Similarity=0.231 Sum_probs=82.4
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHH----HcCC--CeEEEEecc
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMAS 273 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~----ergv--~~~~~v~d~ 273 (544)
+..|..+|...+|+ +||+-|.|+|++..++++. .+...|+ ++...+.|+ +.++ .+.+.+-|.
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfef-----H~~Ra~ka~eeFr~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEF-----HETRAEKALEEFREHGIGDNVTVTHRDV 166 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEe-----cHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence 45677888888887 9999999999998888875 4666666 333333333 3444 466777777
Q ss_pred ccCCCC--CCCeeEEEecccccccccChHHHHHHHHHcccCCc-EEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHH
Q 009069 274 IRLPYP--SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGG-YWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIA 350 (544)
Q Consensus 274 ~~LPfp--d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG-~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la 350 (544)
....|. +..+|.|+.-. +. |-.++--++.+||-+| +|+--.| -+++.+. --+++
T Consensus 167 c~~GF~~ks~~aDaVFLDl-----Pa-Pw~AiPha~~~lk~~g~r~csFSP----------------CIEQvqr-tce~l 223 (314)
T KOG2915|consen 167 CGSGFLIKSLKADAVFLDL-----PA-PWEAIPHAAKILKDEGGRLCSFSP----------------CIEQVQR-TCEAL 223 (314)
T ss_pred ccCCccccccccceEEEcC-----CC-hhhhhhhhHHHhhhcCceEEeccH----------------HHHHHHH-HHHHH
Confidence 776665 57899998633 32 5566777777999877 4443333 1222233 33467
Q ss_pred Hhhcceeeee
Q 009069 351 RSLCWKKLIQ 360 (544)
Q Consensus 351 ~~l~w~~v~~ 360 (544)
.+++|..+..
T Consensus 224 ~~~gf~~i~~ 233 (314)
T KOG2915|consen 224 RSLGFIEIET 233 (314)
T ss_pred HhCCCceEEE
Confidence 7788866653
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.041 Score=58.22 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=80.5
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEE
Q 009069 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--ALIG 269 (544)
Q Consensus 195 ~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~ 269 (544)
.+|..+...--.++.++. ..|+ +|||+=+|.|.|+..++.. .|.++|+.|..+. ...+.++.+++. +...
T Consensus 169 v~Fsprl~~ER~Rva~~v--~~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~-~L~eNi~LN~v~~~v~~i 243 (341)
T COG2520 169 VYFSPRLSTERARVAELV--KEGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVE-YLKENIRLNKVEGRVEPI 243 (341)
T ss_pred eEECCCchHHHHHHHhhh--cCCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHH-HHHHHHHhcCccceeeEE
Confidence 334444333333455444 2344 9999999999999998876 3788899886654 333444444443 5567
Q ss_pred EeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 270 v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+|....+..-+.||-|+.... .....++..+.+.|++||.+-+-..
T Consensus 244 ~gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 244 LGDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred eccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEec
Confidence 7888777766588999998552 2346899999999999999988754
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.014 Score=56.94 Aligned_cols=99 Identities=19% Similarity=0.195 Sum_probs=64.6
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
.+++|||+|.|+|..+..-+.. .+...|+.|.-. .+..-.+..+++.+.+...|... .+..||+|+.+.++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 3669999999999766665554 577788875322 23323344567666666544333 6678999999887743
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
-.. ...++. +.+.|+..|.-++.+.|
T Consensus 155 ~~~-a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 155 HTE-ADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred chH-HHHHHH-HHHHHHhCCCEEEEeCC
Confidence 332 245555 77777777777777654
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.11 Score=52.13 Aligned_cols=144 Identities=18% Similarity=0.150 Sum_probs=91.6
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEE-EeccccCC--CC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIG-VMASIRLP--YP 279 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~-v~d~~~LP--fp 279 (544)
....+.+.+.. .++.+||||.-||.|+..++++ .|.++|+.-..++ ...+....+... ..++..+. .-
T Consensus 68 ~~ale~F~l~~-k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~-----~kLR~d~rV~~~E~tN~r~l~~~~~ 141 (245)
T COG1189 68 EKALEEFELDV-KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH-----WKLRNDPRVIVLERTNVRYLTPEDF 141 (245)
T ss_pred HHHHHhcCcCC-CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC-----HhHhcCCcEEEEecCChhhCCHHHc
Confidence 34444444432 3568999999999999999998 4778888554443 333334333322 22222222 11
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccc----cccCCCcchhhhHhhhhhHHHHHHhhcc
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES----HWKGWNRTTEDLKSEQNGIETIARSLCW 355 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~----~~~~w~~t~e~L~~~~~~ie~la~~l~w 355 (544)
.+..|+|+|--+++. ...+|..+..+|+|+|.++.-.-|..-.. ..++-.+.++.......+++..++..+|
T Consensus 142 ~~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~ 217 (245)
T COG1189 142 TEKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGF 217 (245)
T ss_pred ccCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCc
Confidence 236789998776532 46899999999999999888653332111 1223345555666667788899999999
Q ss_pred eeee
Q 009069 356 KKLI 359 (544)
Q Consensus 356 ~~v~ 359 (544)
....
T Consensus 218 ~~~g 221 (245)
T COG1189 218 QVKG 221 (245)
T ss_pred EEee
Confidence 8765
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.018 Score=61.81 Aligned_cols=95 Identities=9% Similarity=0.123 Sum_probs=67.2
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC-CCCCCeeEEEecccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-YPSRAFDMAHCSRCL 292 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP-fpd~sFDlV~~~~~l 292 (544)
-+|||+.||+|..+..++.+ .|+++|+++..+.....+ +..+++ .+.+...|+..+- .....||+|..-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N-~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNN-VEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 37999999999999999875 378889987655433333 333344 3566666654432 1235799998744
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+. .+..++..+.+.+++||++.++.
T Consensus 123 --fG-s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 --FG-TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --CC-CcHHHHHHHHHhcccCCEEEEEe
Confidence 22 34689999999999999999983
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.063 Score=57.26 Aligned_cols=109 Identities=19% Similarity=0.272 Sum_probs=67.8
Q ss_pred HHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----C-cEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCC--CC-
Q 009069 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR-----N-ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLP--YP- 279 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~-V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LP--fp- 279 (544)
.++...++ .+|||+.++.|+=+.++++. . |++.|+++.-+. ...+...+-|+. +.....|...++ .+
T Consensus 150 ~~L~p~pg--e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~-~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 150 LVLDPKPG--ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLK-RLRENLKRLGVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHcCCCCc--CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHH-HHHHHHHHcCCCceEEEecccccccccccc
Confidence 34444554 49999999999766666654 2 478888664442 233334444654 456666665554 22
Q ss_pred CCCeeEEEe------cccccc-----c--ccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHC------SRCLIP-----W--GQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~------~~~l~h-----~--~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+.||.|+. ..++.. | ... +..+|..+.++|||||.|+.++-
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 235999995 222211 1 111 13789999999999999999964
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.054 Score=62.79 Aligned_cols=102 Identities=14% Similarity=0.023 Sum_probs=63.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----------------------------------------------CcEEEeCCccchH
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----------------------------------------------NILAVSFAPRDTH 252 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----------------------------------------------~V~~vdisp~dls 252 (544)
+..++|.+||+|++....+.. .++++|+++..+.
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 348999999999887665321 3677888776665
Q ss_pred HHHHHHHHHcCCC--eEEEEeccccCCCC--CCCeeEEEecccccccccCh---HHHHHHHHHc---ccCCcEEEEEeC
Q 009069 253 EAQVQFALERGVP--ALIGVMASIRLPYP--SRAFDMAHCSRCLIPWGQYD---GLYLIEVDRV---LRPGGYWILSGP 321 (544)
Q Consensus 253 ~a~v~~A~ergv~--~~~~v~d~~~LPfp--d~sFDlV~~~~~l~h~~~d~---~~~L~Ei~RV---LKPGG~Lvis~p 321 (544)
.+..+. ...|+. +.+...|...++.+ .++||+|+++.-+..-..+. ..+..++-+. +.+|+.+++.++
T Consensus 271 ~A~~N~-~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 271 AARKNA-RRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHH-HHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 554433 334553 67778888777654 35799999997432222111 2333343344 448988877543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.13 Score=50.13 Aligned_cols=135 Identities=15% Similarity=0.119 Sum_probs=77.5
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHH
Q 009069 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE 261 (544)
Q Consensus 185 ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~e 261 (544)
|..+..|.+. ......+..-+.+-.++....-.+.++||+=+|+|.++...+.+| ++.+|.+.........+ ...
T Consensus 11 gr~L~~p~~~-~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N-~~~ 88 (187)
T COG0742 11 GRKLKTPDGP-GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKEN-LKA 88 (187)
T ss_pred CCcccCCCCC-CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHH-HHH
Confidence 4444555442 223445555566666665322345589999999999999999984 66777755433222222 222
Q ss_pred cC--CCeEEEEeccccC-CCCCC--CeeEEEecccccccccChHHHHHH--HHHcccCCcEEEEEeC
Q 009069 262 RG--VPALIGVMASIRL-PYPSR--AFDMAHCSRCLIPWGQYDGLYLIE--VDRVLRPGGYWILSGP 321 (544)
Q Consensus 262 rg--v~~~~~v~d~~~L-Pfpd~--sFDlV~~~~~l~h~~~d~~~~L~E--i~RVLKPGG~Lvis~p 321 (544)
-+ ....+...|+... +-... .||+|+.-.-++.-.-+....+.. -...|+|+|.+++...
T Consensus 89 l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 89 LGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred hCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 23 3456666665532 22223 499999877442111111222223 4567999999999865
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.017 Score=61.40 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=53.2
Q ss_pred EEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC----------------CCCC
Q 009069 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP----------------YPSR 281 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP----------------fpd~ 281 (544)
.|||+-||+|.|+..|++. .|+++++.+.++..+.. .|..+++ ++.+..++++.+. ....
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~-Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 277 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARE-NAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSF 277 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHH-HHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCT
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHH-HHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhc
Confidence 6999999999999999986 68888887766654444 4445555 5777766554321 1233
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+|+|+.-.-.-... ..++..+. ++.-.+++|-.
T Consensus 278 ~~d~vilDPPR~G~~---~~~~~~~~---~~~~ivYvSCn 311 (352)
T PF05958_consen 278 KFDAVILDPPRAGLD---EKVIELIK---KLKRIVYVSCN 311 (352)
T ss_dssp TESEEEE---TT-SC---HHHHHHHH---HSSEEEEEES-
T ss_pred CCCEEEEcCCCCCch---HHHHHHHh---cCCeEEEEECC
Confidence 689987633221111 34444443 34456666643
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.034 Score=54.25 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=71.8
Q ss_pred hcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHH-------HHHHHHHHcCC-CeEEEEeccccCC--
Q 009069 212 INLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHE-------AQVQFALERGV-PALIGVMASIRLP-- 277 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~-------a~v~~A~ergv-~~~~~v~d~~~LP-- 277 (544)
..++++. +|+|+=-|.|.|++-++.. | .+..+.|.+... .....+++... +....-...-.++
T Consensus 44 aGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p 120 (238)
T COG4798 44 AGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP 120 (238)
T ss_pred eccCCCC--EEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC
Confidence 3456655 9999999999999988764 4 345555544311 11111111110 1111111111222
Q ss_pred -----CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHh
Q 009069 278 -----YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARS 352 (544)
Q Consensus 278 -----fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~ 352 (544)
.+..++|.++...-+ | ....+.+..++++.|||||.+++.++...--... ..+....+..-..+....+.
T Consensus 121 q~~d~~~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~---~dt~~~~ri~~a~V~a~vea 195 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL---SDTITLHRIDPAVVIAEVEA 195 (238)
T ss_pred Ccccccccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh---hhhhhhcccChHHHHHHHHh
Confidence 122344444433333 2 2223789999999999999999986522210000 01111111112334556677
Q ss_pred hcceeeeee
Q 009069 353 LCWKKLIQK 361 (544)
Q Consensus 353 l~w~~v~~~ 361 (544)
.+|+...+.
T Consensus 196 aGFkl~aeS 204 (238)
T COG4798 196 AGFKLEAES 204 (238)
T ss_pred hcceeeeee
Confidence 788776653
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.014 Score=60.69 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP- 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP- 277 (544)
.++++.+.+...++. .+||.+||.|..+..+++. .|+++|.++.++..+...+.. ..++.+...+...+.
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKE 82 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHH
Confidence 345666666555544 8999999999999999876 367777766555444432221 235677776655432
Q ss_pred -CCC--CCeeEEEecccc
Q 009069 278 -YPS--RAFDMAHCSRCL 292 (544)
Q Consensus 278 -fpd--~sFDlV~~~~~l 292 (544)
.++ .++|.|++....
T Consensus 83 ~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 83 VLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHcCCCccCEEEECCCc
Confidence 111 279999975433
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.056 Score=53.89 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=66.4
Q ss_pred ccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC----CCCCCee
Q 009069 214 LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----YPSRAFD 284 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP----fpd~sFD 284 (544)
+++++ +||-+|..+|+...++++- -|.++++++... ...+..|.+|. ++.-...|+. .| .--+.+|
T Consensus 71 ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 71 IKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMVD 145 (229)
T ss_dssp --TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--EE
T ss_pred CCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC-ceeeeeccCC-ChHHhhccccccc
Confidence 44444 9999999999888888763 378999999655 56667887774 4444445543 33 1124799
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|++--+ -+++.+.++..+...||+||.|+++.
T Consensus 146 vI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 146 VIFQDVA---QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 9998542 22323678888889999999999984
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.042 Score=56.89 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=63.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC---CeEEEEecccc-CC--CCCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIR-LP--YPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~-LP--fpd~sFDlV~~~ 289 (544)
+++|||+=|=||+|+.+.+..| ++.+|.|...+..+..+++. +++ .+.+...|... +. -..++||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 4489999999999999887764 67778877666655555544 333 46777777533 11 124689999983
Q ss_pred cccc-----ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLI-----PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~-----h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.--. ....+-..++..+.++|+|||.|++...
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2110 0111114678889999999999998865
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.047 Score=54.08 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCc---EEEeCCccchHHHHHHHHHHcCC----CeEEEEeccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALERGV----PALIGVMASI 274 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V---~~vdisp~dls~a~v~~A~ergv----~~~~~v~d~~ 274 (544)
..+++.+++.+..+ +++||.||-|-|...-.+.++.. .+++.-| ...+..++.|. ++.+..+--+
T Consensus 88 tpiMha~A~ai~tk---ggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-----~V~krmr~~gw~ek~nViil~g~We 159 (271)
T KOG1709|consen 88 TPIMHALAEAISTK---GGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-----DVLKRMRDWGWREKENVIILEGRWE 159 (271)
T ss_pred hHHHHHHHHHHhhC---CceEEEeccchHHHHHHHhhcCCcceEEEecCH-----HHHHHHHhcccccccceEEEecchH
Confidence 34555566665433 45799999999998888887732 3444433 33333333332 3333333211
Q ss_pred c-C-CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 275 R-L-PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 275 ~-L-Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
+ + .++|+.||-|+--- +....++...+.+-+.|+|||+|.|-+-
T Consensus 160 Dvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 160 DVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 1 1 25788999998633 3244445678889999999999998765
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.12 Score=55.27 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=72.2
Q ss_pred CEEEEeCCCCcHHHHHHhhCC-------------------------------------------cEEEeCCccchHHHHH
Q 009069 220 RTAIDTGCGVASWGAYLMSRN-------------------------------------------ILAVSFAPRDTHEAQV 256 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~-------------------------------------------V~~vdisp~dls~a~v 256 (544)
..++|-=||+|++....+-.+ +.++|+++..+..+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 479999999999887765432 558999888775444
Q ss_pred HHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccccccccCh----------HHHHHHHHHcccCCcEEEEEeC
Q 009069 257 QFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD----------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 257 ~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~----------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..|+..|+. +.|.++|...++-+-+.+|+|+|+. ++.... ..+.+.+.+.++-.+.++++++
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP---PYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP---PYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC---CcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 456666765 7889999888875547899999987 433211 2455667788888889999875
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.042 Score=55.86 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHH---cCCCeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE---RGVPALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~e---rgv~~~~~v~d~~~ 275 (544)
....++.|.+.+....+. .|||||.|.|.++..|++. .++++++++.. .+...+ ...++.+...|...
T Consensus 15 ~~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~-----~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRGKRVIAVEIDPDL-----AKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSSEEEEEESSHHH-----HHHHHHHCTTCSSEEEEES-TTT
T ss_pred CHHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhcccCcceeecCcHhH-----HHHHHHHhhhcccceeeecchhc
Confidence 355677888888766444 8999999999999999886 58888886532 223323 23468888888888
Q ss_pred CCCCC---CCeeEEEecccccccccChHHHHHHHHHcccC
Q 009069 276 LPYPS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP 312 (544)
Q Consensus 276 LPfpd---~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKP 312 (544)
+..+. +.-..|+++. ++.- ...++..+...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~Nl---Py~i-s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNL---PYNI-SSPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEE---TGTG-HHHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEe---cccc-hHHHHHHHhhcccc
Confidence 77654 4566777765 3321 24666666664344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.06 Score=55.58 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=63.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccC-C-CCCCCeeEEEe--
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRL-P-YPSRAFDMAHC-- 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~L-P-fpd~sFDlV~~-- 288 (544)
+..|||+.+|.|.=+..+++. .+.+.|++..-+..-. +.+.+-|+. +.....|.... + .....||.|+.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 448999999999877777654 4788888665443222 233344554 44444565444 1 23346999995
Q ss_pred --ccc--cccccc-------C--------hHHHHHHHHHcc----cCCcEEEEEeC
Q 009069 289 --SRC--LIPWGQ-------Y--------DGLYLIEVDRVL----RPGGYWILSGP 321 (544)
Q Consensus 289 --~~~--l~h~~~-------d--------~~~~L~Ei~RVL----KPGG~Lvis~p 321 (544)
+.. +..-++ . +..+|..+.+.| ||||+++.++-
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 222 111110 0 137889999999 99999999964
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.23 Score=52.83 Aligned_cols=137 Identities=18% Similarity=0.145 Sum_probs=81.6
Q ss_pred cCCcee-cCCCCCCCcccHHHHHHHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHH
Q 009069 184 QGDRFS-FPGGGTMFPRGADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQ 257 (544)
Q Consensus 184 ~ge~~~-F~g~g~~F~~ga~~~i~~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~ 257 (544)
.|+.++ |.+++-+|...-+....+-.-.-... -...++||-+|.|.|.-++.|.+. .++-+|++|.+++-+...
T Consensus 253 ~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~ 332 (508)
T COG4262 253 RGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHA 332 (508)
T ss_pred ecCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhh
Confidence 455555 67777777544332221111111122 123568999999999999999886 588899988887655433
Q ss_pred HHHHc---C----CCeEEEEecccc-CCCCCCCeeEEEecccccccccCh-----HHHHHHHHHcccCCcEEEEEeC
Q 009069 258 FALER---G----VPALIGVMASIR-LPYPSRAFDMAHCSRCLIPWGQYD-----GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 258 ~A~er---g----v~~~~~v~d~~~-LPfpd~sFDlV~~~~~l~h~~~d~-----~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..... + ..+.+...|+.. +.-..+.||.|+.-. ..+-.+.. ..+..-+.|.|+++|.+++...
T Consensus 333 ~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 333 TVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred hHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 22211 1 234555545322 223456899998632 11111101 4778889999999999999753
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.13 Score=55.44 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=44.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-------------------CcEEEeCCccchHHHHHHHHHH-------------cCCCe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-------------------NILAVSFAPRDTHEAQVQFALE-------------RGVPA 266 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------------------~V~~vdisp~dls~a~v~~A~e-------------rgv~~ 266 (544)
..+|+|+|||+|..+..+... .+..-|+-.+|...-...+... .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 447999999999665544221 2333466666655443332210 11111
Q ss_pred EEEEe---ccccCCCCCCCeeEEEeccccccccc
Q 009069 267 LIGVM---ASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 267 ~~~v~---d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
.|..+ ....--||+++.+++|++.++ ||..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSL-HWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccc-eecc
Confidence 22211 222233899999999999999 7765
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.22 Score=52.71 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=41.2
Q ss_pred cCCCCCEEEEeCCCCcHHHHHHhhC--------------------CcEEEeCCccchHHHHHHHHHH-----cCCCeEE-
Q 009069 215 KDGSIRTAIDTGCGVASWGAYLMSR--------------------NILAVSFAPRDTHEAQVQFALE-----RGVPALI- 268 (544)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~--------------------~V~~vdisp~dls~a~v~~A~e-----rgv~~~~- 268 (544)
..+..-+|+|+||..|..+..+... .+.--|+-.+|...-...+... ...++..
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3444568999999999766655431 2445577777776444332221 1122222
Q ss_pred EEe-ccccCCCCCCCeeEEEeccccccccc
Q 009069 269 GVM-ASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 269 ~v~-d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
.+. ....--||+++.|+++++.++ ||..
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~al-HWLS 121 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYAL-HWLS 121 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-T-TB-S
T ss_pred ecCchhhhccCCCCceEEEEEechh-hhcc
Confidence 122 233334899999999999999 6643
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.21 Score=52.03 Aligned_cols=93 Identities=16% Similarity=0.257 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHhcccCCC---CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEE
Q 009069 200 GADAYIDDIGKLINLKDGS---IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGV 270 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~---~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v 270 (544)
+...|+.-|.++|...... .-++||||+|...+-..|..+ .++++||++..+..++.......++ .+.+..
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 4556887788887643322 357999999988554444432 6889999887776666555443133 344443
Q ss_pred ecccc-----CCCCCCCeeEEEecccc
Q 009069 271 MASIR-----LPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 271 ~d~~~-----LPfpd~sFDlV~~~~~l 292 (544)
..... +..+++.||+.+|+.-|
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE----
T ss_pred cCCccccchhhhcccceeeEEecCCcc
Confidence 32111 11234689999999954
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.89 Score=45.97 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCc-HHHHHHhh--CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVA-SWGAYLMS--RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG-~~a~~La~--~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP 277 (544)
.+..+.+..-+.....-.+++||=+|=+-- +++..|.. +.|+++||+..-+ ....+.|.+.|.++.....|. +.|
T Consensus 27 ~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~i~~~~~Dl-R~~ 104 (243)
T PF01861_consen 27 PETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLPIEAVHYDL-RDP 104 (243)
T ss_dssp HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT--EEEE---T-TS-
T ss_pred HHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCceEEEEecc-ccc
Confidence 455555555455444445779999997665 55555543 4799999987655 344467778888887777765 334
Q ss_pred CC---CCCeeEEEecccccccccCh-HHHHHHHHHcccCCc-EEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHh
Q 009069 278 YP---SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGG-YWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARS 352 (544)
Q Consensus 278 fp---d~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG-~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~ 352 (544)
+| -++||++++-. ++..+. ..++......||.-| ..+++-.. .+.....|.+++...-.
T Consensus 105 LP~~~~~~fD~f~TDP---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~-------------~~~s~~~~~~~Q~~l~~ 168 (243)
T PF01861_consen 105 LPEELRGKFDVFFTDP---PYTPEGLKLFLSRGIEALKGEGCAGYFGFTH-------------KEASPDKWLEVQRFLLE 168 (243)
T ss_dssp --TTTSS-BSEEEE------SSHHHHHHHHHHHHHTB-STT-EEEEEE-T-------------TT--HHHHHHHHHHHHT
T ss_pred CCHHHhcCCCEEEeCC---CCCHHHHHHHHHHHHHHhCCCCceEEEEEec-------------CcCcHHHHHHHHHHHHH
Confidence 44 47999999977 455433 678899999998766 43333210 01112234557777777
Q ss_pred hcceeee
Q 009069 353 LCWKKLI 359 (544)
Q Consensus 353 l~w~~v~ 359 (544)
+++-...
T Consensus 169 ~gl~i~d 175 (243)
T PF01861_consen 169 MGLVITD 175 (243)
T ss_dssp S--EEEE
T ss_pred CCcCHHH
Confidence 8775443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.16 Score=52.05 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=52.5
Q ss_pred CCCEEEEeCCCCc--HHHHHHhh-----CCcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCC----------C
Q 009069 218 SIRTAIDTGCGVA--SWGAYLMS-----RNILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLP----------Y 278 (544)
Q Consensus 218 ~~r~VLDIGCGtG--~~a~~La~-----~~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LP----------f 278 (544)
.++..||||||-= ...-.+++ ..|..+|.+|.-+.-+..-+ ..... ..++.+|..+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL--~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALL--ADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHH--TT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhh--cCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 3668999999954 23333433 26888999775443222212 22233 677777754321 1
Q ss_pred --CCCCeeEEEeccccccccc--ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 --PSRAFDMAHCSRCLIPWGQ--YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 --pd~sFDlV~~~~~l~h~~~--d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.++.. .|+...++|+..+ ++..++..+...|.||.+|+|+..
T Consensus 146 lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 146 LDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp --TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 12222 4555677766655 348999999999999999999954
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.11 Score=49.62 Aligned_cols=69 Identities=23% Similarity=0.219 Sum_probs=41.2
Q ss_pred EEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC--CCCCC-eeEEEecc
Q 009069 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP--YPSRA-FDMAHCSR 290 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP--fpd~s-FDlV~~~~ 290 (544)
+|||+.||.|..+..+++. .|+++|+++.-+.-++- .|.--|+ ++.+..+|...+. +..+. ||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~h-Na~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKH-NAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHH-HHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 7999999999999999997 48888886654433332 2333354 4788888854432 12222 89999865
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.34 Score=51.26 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=52.0
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-----CeEEEEeccccCCCC-CCCeeEEE
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-----PALIGVMASIRLPYP-SRAFDMAH 287 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-----~~~~~v~d~~~LPfp-d~sFDlV~ 287 (544)
..+|||+|.|.|.-+.++-.- .+..++.++ .+.+.--.++..-.. +..-+. ..+++++ ...|++|+
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt--~dRl~lp~ad~ytl~i 190 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVT--EDRLSLPAADLYTLAI 190 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccc--hhccCCCccceeehhh
Confidence 447999999999765554332 344444433 221111112211111 111112 2344444 34566666
Q ss_pred ecccccccccC-h-HHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQY-D-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~d-~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...-+.|-... + ...++.+..++.|||.|+|..+
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 54433222211 1 2478889999999999999975
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.066 Score=58.98 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~ 275 (544)
++.....+.+.+.+..+. .+||+-||||.++..+++. .|.++.+++.++..|.. .|..+|+ ++.|+++.+++
T Consensus 368 aevLys~i~e~~~l~~~k--~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~-nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADK--TLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK-NAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHHHhCCCCCc--EEEEEeecCCceehhhhccccceeeeecChhhcchhhh-cchhcCccceeeeecchhh
Confidence 344445566666666554 8999999999999999987 78888998877754443 4555665 67888774443
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.18 Score=50.37 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=47.8
Q ss_pred EEeccccC--CCCCCCeeEEEeccccc----c-----cccC-----hHHHHHHHHHcccCCcEEEEEeCCCCccccccCC
Q 009069 269 GVMASIRL--PYPSRAFDMAHCSRCLI----P-----WGQY-----DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGW 332 (544)
Q Consensus 269 ~v~d~~~L--Pfpd~sFDlV~~~~~l~----h-----~~~d-----~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w 332 (544)
..+|.... .++++++|+|++..-.. . +..+ ....+.|+.|+|||||.+++... |
T Consensus 5 ~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~----------~ 74 (227)
T PRK13699 5 ILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG----------W 74 (227)
T ss_pred EechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec----------c
Confidence 34454333 46788888888864221 0 0000 14788999999999999987532 1
Q ss_pred CcchhhhHhhhhhHHHHHHhhcceeeeeeccEEEEeccC
Q 009069 333 NRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPT 371 (544)
Q Consensus 333 ~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~~aIwqKP~ 371 (544)
.. ...+....+..+|.... ..||.|+-
T Consensus 75 ~~--------~~~~~~al~~~GF~l~~----~IiW~K~~ 101 (227)
T PRK13699 75 NR--------VDRFMAAWKNAGFSVVG----HLVFTKNY 101 (227)
T ss_pred cc--------HHHHHHHHHHCCCEEee----EEEEECCC
Confidence 11 11233445666776433 47899974
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.069 Score=51.93 Aligned_cols=91 Identities=18% Similarity=0.117 Sum_probs=62.7
Q ss_pred EEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc-----CCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~er-----gv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
++.|+|+|+|.++...++. .|.++..+|.-. +.|.++ ..+..++++|+....| ..-|+|+|-..=.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhH
Confidence 6899999999877666654 788888866422 234443 2457888889888887 4579999954222
Q ss_pred cccc-ChHHHHHHHHHcccCCcEEEE
Q 009069 294 PWGQ-YDGLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 294 h~~~-d~~~~L~Ei~RVLKPGG~Lvi 318 (544)
-+.+ .....+..+...||-.+.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 2222 225677778888888888764
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.043 Score=48.80 Aligned_cols=46 Identities=33% Similarity=0.692 Sum_probs=30.1
Q ss_pred CeeEEEecccc--cc--cccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccc
Q 009069 282 AFDMAHCSRCL--IP--WGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHW 329 (544)
Q Consensus 282 sFDlV~~~~~l--~h--~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~ 329 (544)
.||+|.|..+. +| +.++. ..+|+.+.+.|+|||.|++. |..|....
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE--pQ~w~sY~ 51 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE--PQPWKSYK 51 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-----HHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe--CCCcHHHH
Confidence 48999995543 12 22222 57999999999999999998 34565443
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.8 Score=41.48 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=65.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---C-cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC----CCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----YPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~-V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP----fpd~sFDlV~~~~ 290 (544)
+.+||=+|+.+|+...+++.- | +.++.+++... ...+..+.+|. ++.-...|+ +.| +-=+..|+|++--
T Consensus 77 g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~-reLl~~a~~R~-Ni~PIL~DA-~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 77 GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM-RELLDVAEKRP-NIIPILEDA-RKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH-HHHHHHHHhCC-Cceeeeccc-CCcHHhhhhcccccEEEEec
Confidence 449999999999888887763 4 88999999776 45566777664 222223343 333 1234589998743
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+ -+++.+.+...+...||+||+++++.
T Consensus 154 A---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 154 A---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred C---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 2 12222678888999999999888863
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.2 Score=49.32 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=50.9
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCcc--chHHHHHHHHHHcC----C-CeEEEEeccccCCCCCCCeeEEEec
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPR--DTHEAQVQFALERG----V-PALIGVMASIRLPYPSRAFDMAHCS 289 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~--dls~a~v~~A~erg----v-~~~~~v~d~~~LPfpd~sFDlV~~~ 289 (544)
.+.|||||.|.+...|+.. -+.+++|--. |.-++.++..+... . ++.+...+ .+-|-.+-|..--.+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~n--amk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTN--AMKFLPNFFEKGQLS 140 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeecc--chhhccchhhhcccc
Confidence 4899999999999999887 3555655221 22233333332111 1 12222111 111222222222222
Q ss_pred ccccccccCh-------------HHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWGQYD-------------GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~~d~-------------~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
-.++.+++ + ..++.+..=+|++||.++...
T Consensus 141 kmff~fpd-pHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPD-PHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCC-hhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22212221 2 368899999999999999874
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.31 Score=44.78 Aligned_cols=95 Identities=16% Similarity=0.045 Sum_probs=51.4
Q ss_pred CCCEEEEeCCCCcHHHHHHhh-----C---CcEEEeCCccchHHHHHHHHHHcC--C--CeEEEEeccccCCCCCCCeeE
Q 009069 218 SIRTAIDTGCGVASWGAYLMS-----R---NILAVSFAPRDTHEAQVQFALERG--V--PALIGVMASIRLPYPSRAFDM 285 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~-----~---~V~~vdisp~dls~a~v~~A~erg--v--~~~~~v~d~~~LPfpd~sFDl 285 (544)
....|+|+|||.|.++..|+. . .|.++|..+.... ...+.+.+.+ . ...+...+..... .....++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 102 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVE-SAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPDI 102 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHH-HHHHHHHHhcchhhccchhhccchhhhc-ccCCCeE
Confidence 455899999999999999988 3 5677777664433 2323333322 1 1222222222211 1445566
Q ss_pred EEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++. + |--.+. ..+|+-..+ |+-.+++..|
T Consensus 103 ~vg---L-HaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 103 LVG---L-HACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred EEE---e-ecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 664 3 333333 445555544 6666665544
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.64 Score=49.33 Aligned_cols=93 Identities=18% Similarity=0.157 Sum_probs=59.8
Q ss_pred CCEEEEeCCC-CcHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+|+=+|+| .|..+..+++ .+..++.+ +.++...++|++-|....+...+.....--.+.||+|+..-.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 4488888887 3477777777 35444444 335566778887775544432222222211234999986441
Q ss_pred cChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
...+....+.||+||.+++.+.+
T Consensus 239 ---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hhhHHHHHHHHhcCCEEEEECCC
Confidence 46678899999999999999864
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.88 Score=44.92 Aligned_cols=117 Identities=14% Similarity=0.036 Sum_probs=71.0
Q ss_pred EEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccc-cCCCCCCCeeEEEeccccccc
Q 009069 222 AIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASI-RLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 222 VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~-~LPfpd~sFDlV~~~~~l~h~ 295 (544)
|.||||--|.+..+|.++ .++++|+.+..+..+....+.... -.+.+..+|.. .++ +.+..|.|+-..+--..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHHH
Confidence 689999999999999997 478999999888777766654331 24666666643 333 22336887765532110
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeee
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~ 361 (544)
-..+|.+....++..-.|++.-. + ....++......+|..+.+.
T Consensus 80 ---I~~ILe~~~~~~~~~~~lILqP~--~-----------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 80 ---IIEILEAGPEKLSSAKRLILQPN--T-----------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp ---HHHHHHHTGGGGTT--EEEEEES--S------------------HHHHHHHHHHTTEEEEEEE
T ss_pred ---HHHHHHhhHHHhccCCeEEEeCC--C-----------------ChHHHHHHHHHCCCEEEEeE
Confidence 14666777777777778888732 1 13346677888899877653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.38 Score=43.47 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=26.0
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHH
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQ 255 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~ 255 (544)
++||+|||.|.++..+++. .+.+++.++......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999999998875 3677777665554333
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.08 Score=45.72 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=37.8
Q ss_pred EEeCCCCcHHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccC--CCCCCCeeEEEeccc
Q 009069 223 IDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRL--PYPSRAFDMAHCSRC 291 (544)
Q Consensus 223 LDIGCGtG~~a~~La~~-------~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~L--Pfpd~sFDlV~~~~~ 291 (544)
||||+..|..+..+++. .+.++|..+. .+...+..++.+ ..+.+..++.... .+++++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999877777653 3677777553 112222222222 2467776664322 12357899999744
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
- |-.+.....+..+.+.|+|||.+++.
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2 22222367888899999999999886
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.7 Score=44.88 Aligned_cols=100 Identities=9% Similarity=0.163 Sum_probs=55.2
Q ss_pred CCEEEEeCCCCcHHHHHHhh-C-----CcEEEeCCccchHHHHHHHHH---HcCCCeEEEEeccccCCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMS-R-----NILAVSFAPRDTHEAQVQFAL---ERGVPALIGVMASIRLPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-~-----~V~~vdisp~dls~a~v~~A~---ergv~~~~~v~d~~~LPfpd~sFDlV~~~ 289 (544)
.++|+=||+|.=-++..+.. + .++.+|+++.....+. +... .-+....+..+|....+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 45899999998766555543 2 2667888665443332 2222 12345778888877666555689999976
Q ss_pred cccccccc-ChHHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~~-d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
... .... +-..+|..+.+.++||..+++-.
T Consensus 200 alV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALV-GMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhc-ccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 543 3222 23899999999999999999874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.69 Score=46.52 Aligned_cols=95 Identities=13% Similarity=0.235 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHHhcccCC----CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEE
Q 009069 199 RGADAYIDDIGKLINLKDG----SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALI 268 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g----~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~--~~~ 268 (544)
.|...|+..|.++|....+ ...++||||.|.--+-..+--+ .+++.|+++..++.++.-.....+.. +.+
T Consensus 55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~l 134 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRL 134 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeE
Confidence 4566799999999864433 3457999998876443333222 56788888777766665444332322 222
Q ss_pred EEeccccCCC-----CCCCeeEEEeccccc
Q 009069 269 GVMASIRLPY-----PSRAFDMAHCSRCLI 293 (544)
Q Consensus 269 ~v~d~~~LPf-----pd~sFDlV~~~~~l~ 293 (544)
......+--| ..+.||++.|+.-||
T Consensus 135 r~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 135 RRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred EeccCccccccccccccceeeeEecCCCcc
Confidence 2221111112 267899999999553
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.8 Score=40.34 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=47.5
Q ss_pred cEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC-C-CCCCeeEEEecccccccccCh--------HHHHHHHHHc
Q 009069 241 ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-Y-PSRAFDMAHCSRCLIPWGQYD--------GLYLIEVDRV 309 (544)
Q Consensus 241 V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP-f-pd~sFDlV~~~~~l~h~~~d~--------~~~L~Ei~RV 309 (544)
|.+.||-...+......+...... ++.+...+-+.+. + +.+.+|+|+.+....+-.+.. ..+++.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 567777665554444433332222 3666655444443 2 335899999988765544322 3789999999
Q ss_pred ccCCcEEEEEeC
Q 009069 310 LRPGGYWILSGP 321 (544)
Q Consensus 310 LKPGG~Lvis~p 321 (544)
|+|||.+++...
T Consensus 82 L~~gG~i~iv~Y 93 (140)
T PF06962_consen 82 LKPGGIITIVVY 93 (140)
T ss_dssp EEEEEEEEEEE-
T ss_pred hccCCEEEEEEe
Confidence 999999999975
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=89.51 E-value=3.5 Score=39.34 Aligned_cols=120 Identities=21% Similarity=0.238 Sum_probs=71.8
Q ss_pred eCCCCcHHHHHHhhC-----CcEEEeCCccchH-------HHHHHHHHHcCCCeEEEEeccccCC----CCCCCeeEEEe
Q 009069 225 TGCGVASWGAYLMSR-----NILAVSFAPRDTH-------EAQVQFALERGVPALIGVMASIRLP----YPSRAFDMAHC 288 (544)
Q Consensus 225 IGCGtG~~a~~La~~-----~V~~vdisp~dls-------~a~v~~A~ergv~~~~~v~d~~~LP----fpd~sFDlV~~ 288 (544)
||=|.=+|+..|++. +++++.++..+.- ...++..++.|+.+.+.+ |+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~V-Dat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGV-DATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCC-CCCcccccccccCCcCCEEEE
Confidence 566777889888875 5677776443211 122223345566655543 555554 35688999998
Q ss_pred ccccccccc---Ch---------HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcce
Q 009069 289 SRCLIPWGQ---YD---------GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (544)
Q Consensus 289 ~~~l~h~~~---d~---------~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~ 356 (544)
++-...... +. ..+|..+.++|+++|.+.|+..... .+. .|+ |+.+++..++.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---py~-----------~W~-i~~lA~~~gl~ 146 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---PYD-----------SWN-IEELAAEAGLV 146 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---CCc-----------ccc-HHHHHHhcCCE
Confidence 774322100 00 3688899999999999999853111 011 122 56788887776
Q ss_pred eeee
Q 009069 357 KLIQ 360 (544)
Q Consensus 357 ~v~~ 360 (544)
.+..
T Consensus 147 l~~~ 150 (166)
T PF10354_consen 147 LVRK 150 (166)
T ss_pred EEEE
Confidence 6543
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.87 Score=46.88 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=36.1
Q ss_pred EEEEeccccC--CCCCCCeeEEEecccccc----------cc-----cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 267 LIGVMASIRL--PYPSRAFDMAHCSRCLIP----------WG-----QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 267 ~~~v~d~~~L--Pfpd~sFDlV~~~~~l~h----------~~-----~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+..+|.... .+++++||+|++..-+.- +. +....+|.++.|+|||||.|++...
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 4455565442 356788999998653210 00 0014688999999999999999743
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.96 E-value=3.4 Score=44.19 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC---------CC
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP---------YP 279 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP---------fp 279 (544)
+.+|||+.+-.|+=++.|.+. .+.+=|+++.-+. ++.....+-. ...+...++...| ..
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~--~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLN--MLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHH--HHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 449999999999888777764 2344455433222 2222223321 1222222222222 23
Q ss_pred CCCeeEEEe-cccccc-------------c--------ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHC-SRCLIP-------------W--------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~-~~~l~h-------------~--------~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...||-|.| ..|-.. | +.-+..+|..-.|.||+||.++.|+-
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 456999997 111100 1 11113688899999999999999964
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.34 Score=46.09 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=34.6
Q ss_pred CCCeeEEEeccccccccc-------Ch---HHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQ-------YD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~-------d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.++||.+.|..+++|..- ++ ...+.++.++|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 467999999888877531 12 5789999999999999999987
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.60 E-value=2.1 Score=46.47 Aligned_cols=106 Identities=17% Similarity=0.235 Sum_probs=63.4
Q ss_pred ccCCCCCEEEEeCCCCcHHHH---HHh-hCC-cEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCC---CCCCCee
Q 009069 214 LKDGSIRTAIDTGCGVASWGA---YLM-SRN-ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLP---YPSRAFD 284 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~---~La-~~~-V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LP---fpd~sFD 284 (544)
+.+..+.+|||+.+-.|.=+- .|+ ..| |.+.|....-+ ....+.+.+.|+. ..+...|...+| |+. +||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceEEEccCcccccccccCc-ccc
Confidence 344556699999999994333 333 345 45556544333 2333444455664 455556665554 444 899
Q ss_pred EEE----ecc--ccc-----cccc----------ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 285 MAH----CSR--CLI-----PWGQ----------YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 285 lV~----~~~--~l~-----h~~~----------d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-|. |+. +.. .+.. -+.++|..+...+++||+|+.++-
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 998 444 110 0000 014788889999999999999964
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.28 E-value=4.8 Score=44.87 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCC--eEEE
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERGVP--ALIG 269 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~ergv~--~~~~ 269 (544)
.....++.+.+++...... +|+|-.||+|++.....+. .+.+.++......-+...... +++. +...
T Consensus 170 TP~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~i~ 246 (489)
T COG0286 170 TPREVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDANIR 246 (489)
T ss_pred ChHHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCcccccc
Confidence 3455667777777654434 8999999999765544321 245555544444333333332 3443 4555
Q ss_pred EeccccCCCC-----CCCeeEEEeccccc--ccccC---------------------h-HHHHHHHHHcccCCcEEEEEe
Q 009069 270 VMASIRLPYP-----SRAFDMAHCSRCLI--PWGQY---------------------D-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 270 v~d~~~LPfp-----d~sFDlV~~~~~l~--h~~~d---------------------~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+|...-|.. .+.||.|+++.-+. .|... . ..++..+...|+|||+..++.
T Consensus 247 ~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 247 HGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred ccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 5555444432 36799999866442 11110 1 378999999999999887776
Q ss_pred C
Q 009069 321 P 321 (544)
Q Consensus 321 p 321 (544)
|
T Consensus 327 ~ 327 (489)
T COG0286 327 P 327 (489)
T ss_pred c
Confidence 5
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.55 E-value=0.96 Score=44.19 Aligned_cols=91 Identities=20% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe-cccc--------CCCCCCCee
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVM-ASIR--------LPYPSRAFD 284 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~-d~~~--------LPfpd~sFD 284 (544)
..+|||+||..|+|+.-..++ -+.++|+-.. .--.|. .+..+ |..+ ...|+...|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~p~~Ga--~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------EPPEGA--TIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------cCCCCc--ccccccccCCHHHHHHHHHhCCCCccc
Confidence 348999999999999888776 2566666221 101121 11111 1111 113567899
Q ss_pred EEEeccccccccc---Ch-------HHHHHHHHHcccCCcEEEEEe
Q 009069 285 MAHCSRCLIPWGQ---YD-------GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 285 lV~~~~~l~h~~~---d~-------~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|++-++-..-.. |. ..++.-....++|+|.|+.-.
T Consensus 139 vVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 139 VVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 9998443211000 01 234444556788999999873
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=87.41 E-value=1 Score=45.31 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=56.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-------------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--------
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-------------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-------- 277 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP-------- 277 (544)
..+|+|+.+..|+|...|.++ .|+++|+.+... -. .+.-.++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP---------I~--GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP---------IE--GVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc---------cC--ceEEeecccCCHhHHHHHHHH
Confidence 347999999999999988764 167777744211 01 1333444443321
Q ss_pred CCCCCeeEEEeccc-----ccccccCh-----HHHHHHHHHcccCCcEEEEEe
Q 009069 278 YPSRAFDMAHCSRC-----LIPWGQYD-----GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 fpd~sFDlV~~~~~-----l~h~~~d~-----~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|....-|+|+|-.+ +|.+.+.. ..+|.-...||||||.|+--.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 44567899998443 32222211 245666788999999998753
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=87.00 E-value=0.85 Score=40.61 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhCCcEEEeC
Q 009069 219 IRTAIDTGCGVASWGAYLMSRNILAVSF 246 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~V~~vdi 246 (544)
.....|||||.|.+.--|...|..+.++
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccc
Confidence 3469999999999999999999988888
|
; GO: 0008168 methyltransferase activity |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.47 E-value=3.6 Score=41.92 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=51.1
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCcE--EEeCCccchHHHHHHHHHHc-------C----CCeEEEEecc
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL--AVSFAPRDTHEAQVQFALER-------G----VPALIGVMAS 273 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V~--~vdisp~dls~a~v~~A~er-------g----v~~~~~v~d~ 273 (544)
.|.+.+.++.+...+|||.=+|.|..+..++.+|.. .++-++. ..+.++...++ + -.+.+...|.
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~--vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPV--VAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 456666666655458999999999999999998654 4444442 22333333332 1 1244445553
Q ss_pred cc-CCCCCCCeeEEEecccccc
Q 009069 274 IR-LPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 274 ~~-LPfpd~sFDlV~~~~~l~h 294 (544)
.. |.-...+||+|+.-..+-|
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCC
Confidence 22 2212347999998776533
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=86.36 E-value=4.6 Score=42.98 Aligned_cols=99 Identities=17% Similarity=0.091 Sum_probs=56.1
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-----C-CC-CCCCeeEEEe
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----L-PY-PSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-----L-Pf-pd~sFDlV~~ 288 (544)
+.+||.+|||. |..+..+++. ++ .++-+ +.++...+++++.+ .+.+....... + .+ ..+.+|+|+.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~---~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAI---DRVPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 34899999987 7777777765 43 23333 22245556666652 12222111110 0 11 2346899986
Q ss_pred cccc-------cc-------cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCL-------IP-------WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l-------~h-------~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.-.- ++ -..+....+.++.+.|+|||.+++.+.
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 4211 00 111235688999999999999999864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=86.08 E-value=3.8 Score=41.85 Aligned_cols=92 Identities=14% Similarity=0.219 Sum_probs=54.0
Q ss_pred CEEEEeCCC-CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEeccccc
Q 009069 220 RTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----LPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~----LPfpd~sFDlV~~~~~l~ 293 (544)
.+||..|+| .|..+..+++. ++.++-++. ++...+.+++.+....+...+... .....+.+|+|+....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g-- 241 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG-- 241 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC--
Confidence 478888876 46777777664 655444422 234445555556533222110000 0123567999885331
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|++||.++..+.
T Consensus 242 -----~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 -----TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEECC
Confidence 14678899999999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.06 E-value=11 Score=38.59 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=62.3
Q ss_pred CEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEecc----ccCCCCCCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALER-GVPALIGVMAS----IRLPYPSRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~----~~LPfpd~sFDlV 286 (544)
.+.+|+|.|+..=++.|.+. .+..+|++..-+.....++..+. ++++.-..+|. ..+| ..+.==++
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl~~ 158 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRLFV 158 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEEEE
Confidence 48999999999777776542 46778887765555555554443 33333333332 2233 11222233
Q ss_pred EecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 287 HCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 287 ~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+-...+-.+.+++ ..+|..+...|+||-+|++-..
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 3344454555545 6899999999999999999753
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=84.78 E-value=3.4 Score=42.10 Aligned_cols=128 Identities=21% Similarity=0.218 Sum_probs=66.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
..+|||||||.=-++...... .+++.||+...+. ....+...-+++..+.+.|...-+ +....|+++..-.+ |
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve-~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l-p 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVE-FLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL-P 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHH-HHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H-H
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHH-HHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH-H
Confidence 558999999999998877665 4677777554332 111222344677777777765554 45678999987766 4
Q ss_pred cccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcce
Q 009069 295 WGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~ 356 (544)
..+.. ...-.++...++ .=.+++|.|-.....+.++ ........++..+..-+|.
T Consensus 183 ~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~g------m~~~y~~~fe~~~~~~~~~ 238 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKG------MEQTYSAWFEALAAERGWI 238 (251)
T ss_dssp HHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TT------HHHCHHHHHHHHCCTTCEE
T ss_pred HHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccc------cccCHHHHHHHhcccCCce
Confidence 44323 222233333332 2355566553222222222 1112234566777777776
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.51 E-value=3.6 Score=45.91 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=64.8
Q ss_pred CCEEEEeCCCCcHHHHHHhh------C--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMS------R--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~------~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~ 290 (544)
.-.|+=+|.|-|-+.....+ + .+.+++=.|+.+.--+...-..-.-.+.++..|....+-|....|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 34678899999976655433 2 355666666544322111111112357777778888885568899998743
Q ss_pred cccccccCh--HHHHHHHHHcccCCcEEEEE
Q 009069 291 CLIPWGQYD--GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 291 ~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvis 319 (544)
|--+.++. .+.|..+-+.|||.|..|=.
T Consensus 448 -LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 -LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred -hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 43555544 68999999999999877654
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.44 E-value=2.9 Score=41.89 Aligned_cols=87 Identities=22% Similarity=0.364 Sum_probs=52.6
Q ss_pred EEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc----CCC--eEEEEecccc----CCCCCCCeeEEEe
Q 009069 221 TAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GVP--ALIGVMASIR----LPYPSRAFDMAHC 288 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~er----gv~--~~~~v~d~~~----LPfpd~sFDlV~~ 288 (544)
.|+|.-||.|..+...+.++ |.++|++| ..+..|+.+ |++ +.|.++|... +.+....+|+|+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisIdiDP-----ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAIDIDP-----VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEEeccH-----HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 69999999998888888775 45566654 344444433 443 7788887544 3444445677776
Q ss_pred cccccccccC--hHHHHHHHHHcccCCcE
Q 009069 289 SRCLIPWGQY--DGLYLIEVDRVLRPGGY 315 (544)
Q Consensus 289 ~~~l~h~~~d--~~~~L~Ei~RVLKPGG~ 315 (544)
+. +|... ...-+..+...++|.|.
T Consensus 172 sp---pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 172 SP---PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CC---CCCCcchhhhhhhhhhhhcchhHH
Confidence 55 44431 13444455555555543
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=81.35 E-value=5.9 Score=41.45 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC--CCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--PYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L--Pfpd~sFDlV~~~~~l~h 294 (544)
+.+||=+|+| .|.++..+++. ++.++.++..+.++...+++++.|... ........ ....+.||+|+-.-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g--- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG--- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC---
Confidence 3478988987 35666666654 554444433233455666777766432 11111110 001245898885331
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+..++|++||.+++.+.
T Consensus 248 ----~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ----VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ----CHHHHHHHHHHccCCcEEEEEec
Confidence 13578889999999999998764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.89 E-value=7.2 Score=40.66 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=52.7
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEe--ccccCCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI---LAVSFAPRDTHEAQVQFALERGVPALIGVM--ASIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V---~~vdisp~dls~a~v~~A~ergv~~~~~v~--d~~~LPfpd~sFDlV~~~~~ 291 (544)
+.+||=+|+| .|..+..+++. +. .+++. ++...+++++.|....+... +...+....+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~-----~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV-----SPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC-----CHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 4488888876 34555555553 43 34444 34556677776654332111 11111111235898885331
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+..+.+.||+||.+++.+.
T Consensus 245 -------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 13567888999999999999864
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.16 E-value=3.4 Score=44.19 Aligned_cols=67 Identities=10% Similarity=0.167 Sum_probs=42.6
Q ss_pred eeecCCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC------------CcEEEeCCc
Q 009069 181 VRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------------NILAVSFAP 248 (544)
Q Consensus 181 ~~~~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------------~V~~vdisp 248 (544)
+...||.+.-|.-+.+|++-...++-++-+.+ ..+....+++||.|.|.++..+++. .+..+++++
T Consensus 42 ~G~~GDFiTApels~lFGella~~~~~~wq~~--g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 42 IGRKGDFITAPELSQLFGELLAEQFLQLWQEL--GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred ccccCCeeechhHHHHHHHHHHHHHHHHHHHh--cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 34566777777667777655555443333333 2223447999999999988877653 456677776
Q ss_pred c
Q 009069 249 R 249 (544)
Q Consensus 249 ~ 249 (544)
.
T Consensus 120 ~ 120 (370)
T COG1565 120 E 120 (370)
T ss_pred H
Confidence 3
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 8e-09
Identities = 75/520 (14%), Positives = 142/520 (27%), Gaps = 163/520 (31%)
Query: 81 HHQAPDPPPTLARVTY---IPPCDPKYVENVPCEDTHRSLK--FDRDRL--IYRERHCPE 133
HH D + Y + + +V+N C+D K ++ + I +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 134 KTELLKCRVPAPHGYTVPFRWPES--RQFAWYANVPHKELTVEKKNQNWV--RFQGDRFS 189
T L + E ++F V + N ++ +
Sbjct: 63 GTLRL---------FWTLLSKQEEMVQKFV---------EEVLRINYKFLMSPIK-TEQR 103
Query: 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPR 249
P T YI+ +L N D + N+ R
Sbjct: 104 QPSMMT------RMYIEQRDRLYN--DNQV----------------FAKYNV------SR 133
Query: 250 DTHEAQVQFALERGVPA-LIGVMASIRLPYPSRAFDMAHCSR-CLIPWGQYDGLYLIEV- 306
+++ AL PA + + + + + ++V
Sbjct: 134 LQPYLKLRQALLELRPAKNVLI------------DGVLGSGKTWVA----------LDVC 171
Query: 307 --DRVLR--PGG-YWILSG----PPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 357
+V +W+ P E K + + S + I + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 358 LIQKKDLAIWQKPTNHVHC------IANRRVFKKPRF---CK------------AQDPDM 396
+ + L + + +C + N + + F CK
Sbjct: 232 A-ELRRLLKSKP---YENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAAT 285
Query: 397 AWYTKMETCLTPLPEVSNIKEIAGGQLTKWPE-RLNAIPPRVNRGA--VDGVTAEMFRED 453
+ ++ L +K + L K+ + R +P V + AE R+
Sbjct: 286 TTHISLDHHSMTLTP-DEVKSL----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 454 TALWK--KRVTYYK-------SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNT 504
A W K V K S++ +P YR + D L F
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDR---LSVF-------------- 381
Query: 505 VPVEAKI--NTLGVIYERGLIGTYQNWYVFISPLRSYSLI 542
P A I L +I+ + V ++ L YSL+
Sbjct: 382 -PPSAHIPTILLSLIWFD---VIKSDVMVVVNKLHKYSLV 417
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 22/157 (14%)
Query: 187 RFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILA 243
+ G D D++ L++++ G +D GCG+ L + +
Sbjct: 32 YWEDAGADVSVDDATDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTG 89
Query: 244 VSFAPRDTHEAQVQFALER----GVPALIG--VMASIRLPYPSRAFDMAHCSRCLIPWGQ 297
+ QV A R G+ + ++ LP+ +FD L
Sbjct: 90 I-----SISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPD 144
Query: 298 YDGLYLIEVDRVLRPGGY-----WILSGPPVNWESHW 329
E+ RVLRPGG ++L P +
Sbjct: 145 RGRALR-EMARVLRPGGTVAIADFVLLAPVEGAKKEA 180
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 9e-07
Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 25/149 (16%)
Query: 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEA 254
P +A + + L D + D GCG +L I + D
Sbjct: 28 PGSPEATRKAVSFINELTDDA--KIADIGCGTGGQTLFLADYVKGQITGI-----DLFPD 80
Query: 255 QVQFALER----GVPALIG-VMASIR-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDR 308
++ E + + S+ LP+ + D+ + G + E +
Sbjct: 81 FIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG--FERGMNEWSK 138
Query: 309 VLRPGGY-------WILSGPPVNWESHWK 330
L+ GG+ W S P E W
Sbjct: 139 YLKKGGFIAVSEASWFTSERPAEIEDFWM 167
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-06
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 6/158 (3%)
Query: 196 MFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTH 252
M + K N + +D G G + + +
Sbjct: 2 MKTIIRQPQLYRFLKYCNESNLDKT-VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLK 60
Query: 253 EAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLR 311
+A+ F+ E I +LP+ + + + + D + E+ RVL+
Sbjct: 61 KAE-NFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLK 119
Query: 312 PGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETI 349
PGG ++ E + KG + + G + I
Sbjct: 120 PGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVI 157
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 26/180 (14%), Positives = 47/180 (26%), Gaps = 28/180 (15%)
Query: 195 TMFPRGADAYIDDIGKLIN-----------LKDGSIRTAIDTGCGVASWGAYLMSR--NI 241
+ +G +I+ G +D G G W +L S I
Sbjct: 7 KAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQI 66
Query: 242 LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI--PWGQYD 299
+ A R A+ V G + L + + LI G+
Sbjct: 67 EGLEPATRLVELARQTHP---SVTFHHGTIT--DLSDSPKRWAGLLAWYSLIHMGPGELP 121
Query: 300 GLYLIEVDRVLRPGGYWILSGPPVNWESHWKG-----WNRTTEDLKS--EQNGIETIARS 352
L+ + + GG ++S + +L E G + +
Sbjct: 122 DA-LVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSH 180
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 26/155 (16%)
Query: 193 GGTMFPRGADAY----------IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N 240
G +++ Y ++ I L+NL GS D G G + L ++
Sbjct: 1 GMSIYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGS--VIADIGAGTGGYSVALANQGLF 58
Query: 241 ILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299
+ AV + Q A+ V G L P ++ D + + +
Sbjct: 59 VYAV-----EPSIVMRQQAVVHPQVEWFTGYAE--NLALPDKSVDGVISILAIHHFSHLE 111
Query: 300 GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNR 334
E+ R++R G +L+ + + W
Sbjct: 112 -KSFQEMQRIIRDGTIVLLT---FDIRLAQRIWLY 142
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 29/173 (16%)
Query: 224 DTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYPS 280
+ GCG +++ ++ A D A R G P + +
Sbjct: 49 ELGCGAGYQAEAMLAAGFDVDAT-----DGSPELAAEASRRLGRPVRTMLFHQLDAI--- 100
Query: 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKG---WNRTT 336
A+D CL+ + + L + R L+PGG + S E K +N +
Sbjct: 101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPS 160
Query: 337 ED-LKS--EQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKP 386
E+ L++ + G + Q+ +H +KP
Sbjct: 161 EEWLRARYAEAGTWASVAVESS------EGKGFDQELAQFLHVSV-----RKP 202
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 8e-06
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 19/171 (11%)
Query: 174 EKKNQNWVRFQGDRFS--FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVAS 231
+N+ F+ + F P + + + + NL + S D GCG
Sbjct: 2 SNENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKS--LIADIGCGTGG 59
Query: 232 WGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALI-GVMASI-RLPYPSRAFDMA 286
L + + F + A + G+ + G++ S+ LP+ + D+
Sbjct: 60 QTMVLAGHVTGQVTGLDFLSGFIDIFN-RNARQSGLQNRVTGIVGSMDDLPFRNEELDLI 118
Query: 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGY-------WILSGPPVNWESHWK 330
+ G L E + L+ GGY W P W
Sbjct: 119 WSEGAIYNIG--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWM 167
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 1e-05
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEA 254
A+ + G+ ++ GCG+ + L I ++ +P +A
Sbjct: 20 EQAETLEKLLHHDTVYPPGA--KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKA 77
Query: 255 QVQFALERGVPALIGVMASI-RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPG 313
+ + + G+ + + A+I LP+ +FD L + L + +VL+PG
Sbjct: 78 R-ENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEE-ALKSLKKVLKPG 135
Query: 314 G 314
G
Sbjct: 136 G 136
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 224 DTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LPYPS 280
D GCG G YL + ++L D + +A + P V+ +
Sbjct: 52 DAGCGQGRIGGYLSKQGHDVLGT-----DLDPILIDYAKQD-FPEARWVVGDLSVDQISE 105
Query: 281 RAFDMAHCSRCLIPWGQYDGLY--LIEVDRVLRPGGYWILS-GPPVNW 325
FD+ + ++ + DG L + R L G ++ G W
Sbjct: 106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGW 153
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Query: 224 DTGCGVASWGAYL--MSRNILAVSFAPRDTHEAQVQFALERGVPALIG-VMASI-RLPYP 279
D GCG L + V + +Q ERG + + + LP+
Sbjct: 59 DVGCGDGYGTYKLSRTGYKAVGVDISE-----VMIQKGKERGEGPDLSFIKGDLSSLPFE 113
Query: 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS--GPPVNWESHW 329
+ F+ L + L E+ RVL+ GY ++ GP +
Sbjct: 114 NEQFEAIMAINSLEWTEEPLR-ALNEIKRVLKSDGYACIAILGPTAKPRENS 164
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 12/125 (9%)
Query: 214 LKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIG- 269
L D + +T +D GCG Y +L + D E + A + ++
Sbjct: 40 LPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERMLTEAKRKTTSPVVCY 94
Query: 270 VMASIR-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP-PVNWES 327
+I + A+++ S + + +V L+ G +I S PV
Sbjct: 95 EQKAIEDIAIEPDAYNVV-LSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTAD 153
Query: 328 HWKGW 332
+ W
Sbjct: 154 GRQDW 158
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPR 249
T+F ++I + G+ ID G G + L + +I A+ F+
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGTC---IDIGSGPGALSIALAKQSDFSIRALDFSKH 77
Query: 250 DTHEAQVQFALERGVPALIG-VMASI-RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVD 307
A + + + I V + +P D+ + W + E+
Sbjct: 78 MNEIAL-KNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFR-EIY 135
Query: 308 RVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLC---WKKLIQK 361
R+L+ GG + G N E + ++ ++ +
Sbjct: 136 RILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDE 192
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 11/123 (8%)
Query: 211 LINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGV 270
L D +D GCG + +F D + ++ A +R P +
Sbjct: 78 LRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGL-DVSKVAIKAAAKRY-PQVTFC 135
Query: 271 MASIR-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHW 329
+AS LP+ + D E+ RV++PGG+ I + P
Sbjct: 136 VASSHRLPFSDTSMDAIIRIYAPCKAE--------ELARVVKPGGWVITATPGPRHLMEL 187
Query: 330 KGW 332
KG
Sbjct: 188 KGL 190
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 7e-05
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 17/136 (12%)
Query: 192 GGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPR-- 249
G + G +A I I L + S +D G G G + +
Sbjct: 32 GENYISSGGLEA-TKKILSDIELNENS--KVLDIGSG---LGG--GCM-YINEKYGAHTH 82
Query: 250 --DTHEAQVQFALER-GVPALIGVM-ASIR-LPYPSRAFDMAHCSRCLIPWGQYD-GLYL 303
D V A ER I I +P FD+ + ++ +
Sbjct: 83 GIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLF 142
Query: 304 IEVDRVLRPGGYWILS 319
+ + L+P G +++
Sbjct: 143 QKCYKWLKPTGTLLIT 158
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 12/135 (8%)
Query: 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFA 259
+ I+ + L+ +D CGV + L ++ V D E ++ A
Sbjct: 22 RSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGV-----DISEDMIRKA 76
Query: 260 LER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGG 314
E V + +L + + FD ++ + + EV RVL+P G
Sbjct: 77 REYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 136
Query: 315 YWILSGPPVNWESHW 329
+I+ +
Sbjct: 137 KFIMYFTDLRELLPR 151
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278
+ G +L S + AV + +A+ Q A E+GV
Sbjct: 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAK-QLAQEKGVKITTVQSNLADFDI 90
Query: 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTED 338
+ A++ C +P +V + L+PGG +IL G + G + +
Sbjct: 91 VADAWEGIVSIFCHLPSSLRQQ-LYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDL 149
Query: 339 LKSE 342
L
Sbjct: 150 LPKL 153
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 22/142 (15%)
Query: 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHE 253
F AY+ ++ + L ++ G G G + + + + V + E
Sbjct: 26 RWFLVHRFAYLSELQAVKCLLPEG--RGVEIGVGT---GRFAVPLKIKIGV-----EPSE 75
Query: 254 AQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR--CLIPWGQYD-GLYLIEVDRVL 310
+ A +RGV L G LP +FD A C + D L E R+L
Sbjct: 76 RMAEIARKRGVFVLKGTAE--NLPLKDESFDFALMVTTICFVD----DPERALKEAYRIL 129
Query: 311 RPGGYWILSGPPVNWESHWKGW 332
+ GGY I+ + ES
Sbjct: 130 KKGGYLIVGIV--DRESFLGRE 149
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVM-ASI- 274
+D GCG + + +L + + + + A G I A +
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK-----MLARARAAGPDTGITYERADLD 99
Query: 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319
+L P +FD+A S + + + V + L PGG+++ S
Sbjct: 100 KLHLPQDSFDLA-YSSLALHYVEDVARLFRTVHQALSPGGHFVFS 143
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 9/139 (6%)
Query: 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF 258
RG+ + + R +D GCG + I ++ D +E ++F
Sbjct: 22 RGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGV---DINEDMIKF 78
Query: 259 ALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL--IPWGQYDGLYLIEVDRVLRPGGYW 316
E + P + D S + + + L L ++ Y
Sbjct: 79 C-EGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFEL-LSLCYSKMKYSSYI 136
Query: 317 ILSGPPVNWESHWKGWNRT 335
++ P N S + N
Sbjct: 137 VIESP--NPTSLYSLINFY 153
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 6e-04
Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 25/159 (15%)
Query: 197 FPRGADAYIDDIGKLIN--------------LKDGSIRTAIDTGCGVASWGAYLMSRNIL 242
+ + A A+ID + + +D GCG L R I
Sbjct: 17 WHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIE 76
Query: 243 AVSFAPRDTHEAQVQFALERGVPALIGV---MASIRLPYPSRAFDMAHCSRCLIPWGQYD 299
AV D V A G + + + +D+ C+ +
Sbjct: 77 AVGV---DGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLI-CANFALLHQDII 132
Query: 300 GLYLIEVDRVLRPGGYWILSGP-PVNW--ESHWKGWNRT 335
L L + +L PGG ++ P + + GW
Sbjct: 133 EL-LSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREE 170
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 9e-04
Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPAL 267
I +D GCG + YL+ + + D + ++ E+ ++
Sbjct: 11 PNIFEGKKG--VIVDYGCGNGFYCKYLLEFATKLYCI-----DINVIALKEVKEK-FDSV 62
Query: 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES 327
I + P + D + + EV R+L+ G I+ ++W
Sbjct: 63 ITLSDP--KEIPDNSVDFILFANSF-HDMDDKQHVISEVKRILKDDGRVII----IDWRK 115
Query: 328 H 328
Sbjct: 116 E 116
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 544 | |||
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.58 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.57 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.56 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.56 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.53 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.53 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.53 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.52 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.52 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.52 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.52 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.52 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.52 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.51 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.51 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.51 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.51 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.51 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.51 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.49 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.49 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.48 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.47 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.47 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.47 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.46 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.46 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.46 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.46 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.45 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.45 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.44 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.44 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.43 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.43 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.43 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.43 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.43 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.42 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.41 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.41 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.41 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.4 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.4 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.4 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.4 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.4 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.39 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.39 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.39 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.39 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.39 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.39 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.38 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.38 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.38 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.38 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.38 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.37 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.37 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.37 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.36 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.36 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.36 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.34 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.34 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.34 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.34 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.33 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.33 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.33 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.33 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.32 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.31 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.31 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.3 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.29 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.28 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.28 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.28 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.28 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.27 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.26 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.26 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.26 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.25 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.25 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.25 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.25 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.25 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.24 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.24 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.24 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.24 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.24 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.23 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.22 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.21 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.21 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.2 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.2 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.2 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.2 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.2 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.2 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.2 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.19 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.19 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.19 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.19 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.19 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.18 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.18 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.17 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.17 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.16 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.16 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.16 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.15 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.15 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.15 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.14 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.14 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.14 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.14 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.13 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.13 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.13 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.12 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.12 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.12 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.12 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.12 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.12 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.12 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.11 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.09 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.09 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.09 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.08 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.08 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.07 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.07 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.07 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.07 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.07 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.07 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.06 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.06 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.06 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.05 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.05 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.05 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.05 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.05 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.03 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.02 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.02 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.01 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.01 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.01 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.01 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.0 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.0 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.0 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.99 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.99 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.99 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.99 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.98 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.98 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.96 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.96 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.95 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.95 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.95 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.95 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.95 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.93 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.93 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.93 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.93 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.92 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.92 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.91 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.91 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.91 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.9 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.89 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.89 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.89 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.89 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.89 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.89 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.89 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.88 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.87 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.86 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.86 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.85 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.85 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.85 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.85 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.83 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.81 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.8 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.8 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.79 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.79 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.79 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.78 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.78 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.77 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.76 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.76 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.76 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.76 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.75 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.74 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.73 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.73 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.72 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.71 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.71 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.7 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.68 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.68 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.66 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.64 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.64 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.63 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.62 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.61 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.59 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.59 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.58 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.57 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.57 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.56 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.56 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.56 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.56 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.55 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.55 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.54 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.54 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.52 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.5 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.49 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.46 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.4 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.37 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.37 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.36 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.34 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.21 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.19 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.18 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.17 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.17 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.14 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.07 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.06 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.05 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.05 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.04 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.91 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.87 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.77 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.76 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.76 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.74 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.74 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.68 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.68 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.67 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.66 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.65 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.63 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.6 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.52 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.46 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.43 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.31 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.27 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.25 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.23 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.21 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.18 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.02 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.01 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.81 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.68 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.29 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.14 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.34 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.11 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 94.97 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 94.58 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.1 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.31 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 90.44 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 90.14 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 90.0 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 89.81 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 89.56 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 88.8 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 88.68 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 88.61 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 87.78 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 87.68 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 86.66 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 86.07 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 85.85 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 85.84 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 84.53 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 84.47 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 84.38 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 84.34 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 84.29 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 84.16 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 83.1 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 82.94 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 81.42 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 80.64 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 80.05 |
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-15 Score=144.42 Aligned_cols=112 Identities=15% Similarity=0.223 Sum_probs=88.8
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRA 282 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~s 282 (544)
+.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++..+... +.+.+. ++.+.++|...+|+++++
T Consensus 27 ~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~~v~~~~~d~~~l~~~~~~ 103 (260)
T 1vl5_A 27 AKLMQIAALKGN--EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF-IEGNGHQQVEYVQGDAEQMPFTDER 103 (260)
T ss_dssp HHHHHHHTCCSC--CEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHhCCCCC--CEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHhcCCCceEEEEecHHhCCCCCCC
Confidence 445556554443 48999999999999999987 578888887766554433 333443 588899999999999999
Q ss_pred eeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 283 FDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
||+|+|..+++|+. ++..+|.++.|+|||||+|++..+
T Consensus 104 fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 104 FHIVTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp EEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEEhhhhHhcC-CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999999997776 589999999999999999999753
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=136.14 Aligned_cols=157 Identities=14% Similarity=0.065 Sum_probs=109.7
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
.+.+.+....+ .+|||+|||+|.++..+++. .++++|+++.++..+...........+.+..+|...++++++
T Consensus 28 ~~~~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 28 KVLKEFGLKEG--MTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHTCCTT--CEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHhCCCCC--CEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 44455554444 48999999999999888765 478888888777655544443322358899999999999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeee
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~ 361 (544)
+||+|+++.+++|+. +...++.++.|+|||||.+++.......... ..........+++..+++..+|+.+...
T Consensus 106 ~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 106 TVDFIFMAFTFHELS-EPLKFLEELKRVAKPFAYLAIIDWKKEERDK-----GPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp CEEEEEEESCGGGCS-SHHHHHHHHHHHEEEEEEEEEEEECSSCCSS-----SCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred CeeEEEeehhhhhcC-CHHHHHHHHHHHhCCCeEEEEEEeccccccc-----CCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 999999999998775 5799999999999999999998632211100 0011111123567788899999877532
Q ss_pred c-----cEEEEeccC
Q 009069 362 K-----DLAIWQKPT 371 (544)
Q Consensus 362 ~-----~~aIwqKP~ 371 (544)
. ...+++|+.
T Consensus 180 ~~~~~~~~~~~~k~~ 194 (219)
T 3dh0_A 180 EVGKYCFGVYAMIVK 194 (219)
T ss_dssp EETTTEEEEEEECC-
T ss_pred eeCCceEEEEEEecc
Confidence 2 145666664
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-15 Score=148.74 Aligned_cols=108 Identities=23% Similarity=0.290 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
...++.|.+..+ ...+|||||||+|.++..|++++ |+++|+++ .+++.|.+ ..++.+.+++++.+|++
T Consensus 27 ~~l~~~l~~~~~----~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~-----~ml~~a~~-~~~v~~~~~~~e~~~~~ 96 (257)
T 4hg2_A 27 RALFRWLGEVAP----ARGDALDCGCGSGQASLGLAEFFERVHAVDPGE-----AQIRQALR-HPRVTYAVAPAEDTGLP 96 (257)
T ss_dssp HHHHHHHHHHSS----CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCH-----HHHHTCCC-CTTEEEEECCTTCCCCC
T ss_pred HHHHHHHHHhcC----CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcH-----Hhhhhhhh-cCCceeehhhhhhhccc
Confidence 344455555432 23489999999999999999885 56666644 45555543 35789999999999999
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||+|+|..++ ||.+ +..++.|+.|+|||||.|++...
T Consensus 97 ~~sfD~v~~~~~~-h~~~-~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 97 PASVDVAIAAQAM-HWFD-LDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp SSCEEEEEECSCC-TTCC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcccEEEEeeeh-hHhh-HHHHHHHHHHHcCCCCEEEEEEC
Confidence 9999999999999 5654 78899999999999999999864
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=136.45 Aligned_cols=135 Identities=13% Similarity=0.037 Sum_probs=99.6
Q ss_pred CEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
.+|||+|||+|.++..|++++ ++++|++ +.+++.+.++...+.+..+|...+++++++||+|++..+++|+..
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s-----~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 117 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGHQIEGLEPA-----TRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGP 117 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTCCEEEECCC-----HHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCT
T ss_pred CeEEEecCCCCHHHHHHHhcCCeEEEEeCC-----HHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCH
Confidence 379999999999999999874 5666664 455566666666788999999999999999999999999988873
Q ss_pred -ChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeee
Q 009069 298 -YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 298 -d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~ 361 (544)
+...+|+++.++|||||+|++..+............. .......+++..+++..+|+.+...
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVA--TAYRWPLPELAQALETAGFQVTSSH 180 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSS--CEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhh--hhccCCHHHHHHHHHHCCCcEEEEE
Confidence 4589999999999999999998753322111111000 0011123557788889999877643
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=137.34 Aligned_cols=112 Identities=19% Similarity=0.239 Sum_probs=89.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPSRA 282 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LPfpd~s 282 (544)
..+.+.+....+. +|||||||+|.++..+++. .++++|+++.++..+..... ..+ .++.+.++|...+|+++++
T Consensus 11 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 11 GLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQ-EKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH-HHTCCSEEEEECBTTBCCSCTTC
T ss_pred chHHHHhCcCCCC--EEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHH-HcCCCCeEEEecccccCCCCCCc
Confidence 3455555555544 8999999999999999887 57888888776655544333 334 3588889999999999999
Q ss_pred eeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 283 FDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
||+|+|..+++|+. +...+|.++.|+|||||+|++..+
T Consensus 88 fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 88 FDIITCRYAAHHFS-DVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp EEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEECCchhhcc-CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 99999999998886 489999999999999999999754
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=139.66 Aligned_cols=116 Identities=16% Similarity=0.269 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcC---CCeEEEEec
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERG---VPALIGVMA 272 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--V~~vdisp~dls~a~v~~A~erg---v~~~~~v~d 272 (544)
.+.....+.+.+.+....+ .+|||||||+|.++..|+++ + ++++|+++ .+++.+.++. ..+.+..+|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~d 110 (266)
T 3ujc_A 38 SGGLEATKKILSDIELNEN--SKVLDIGSGLGGGCMYINEKYGAHTHGIDICS-----NIVNMANERVSGNNKIIFEAND 110 (266)
T ss_dssp TTHHHHHHHHTTTCCCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCH-----HHHHHHHHTCCSCTTEEEEECC
T ss_pred cchHHHHHHHHHhcCCCCC--CEEEEECCCCCHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHhhcCCCeEEEECc
Confidence 3444455566666554444 48999999999999999886 4 56666644 5555665554 468889999
Q ss_pred cccCCCCCCCeeEEEecccccccc-cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 273 SIRLPYPSRAFDMAHCSRCLIPWG-QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 273 ~~~LPfpd~sFDlV~~~~~l~h~~-~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+|+++++||+|++..+++|+. .+...+|.++.|+|||||.+++..+
T Consensus 111 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 111 ILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp TTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999999999999999999998884 3358999999999999999999864
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-14 Score=140.59 Aligned_cols=119 Identities=15% Similarity=0.262 Sum_probs=93.9
Q ss_pred ccHHHHHHHHHHHh----cccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEE
Q 009069 199 RGADAYIDDIGKLI----NLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIG 269 (544)
Q Consensus 199 ~ga~~~i~~L~~lL----~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~ 269 (544)
......++.+.+.+ .+.. +.+|||||||+|.++..|+++ .++++|+++.++..+..... ..+. .+.+.
T Consensus 61 ~~~~~~~~~l~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~ 137 (297)
T 2o57_A 61 EASLRTDEWLASELAMTGVLQR--QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNN-QAGLADNITVK 137 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCT--TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-HHTCTTTEEEE
T ss_pred HHHHHHHHHHHHHhhhccCCCC--CCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-hcCCCcceEEE
Confidence 34455566677766 4444 348999999999999999876 57788887766654443332 3343 58889
Q ss_pred EeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 270 v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+|...+|+++++||+|++..+++|+.+ ...+|.++.|+|||||+|++..+
T Consensus 138 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 138 YGSFLEIPCEDNSYDFIWSQDAFLHSPD-KLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp ECCTTSCSSCTTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EcCcccCCCCCCCEeEEEecchhhhcCC-HHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999999999999999988875 89999999999999999999864
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-14 Score=136.75 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~ 275 (544)
....++.+.+.+.+.++. +|||||||+|.++..|++. .++++|+++.++..+... +...++ .+.+..+|...
T Consensus 21 ~~~~~~~l~~~~~~~~~~--~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~~~v~~~~~d~~~ 97 (256)
T 1nkv_A 21 TEEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRR-AEELGVSERVHFIHNDAAG 97 (256)
T ss_dssp CHHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCCTT
T ss_pred CHHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH-HHhcCCCcceEEEECChHh
Confidence 455667777777655544 8999999999999999875 578888888777555433 334454 48899999999
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++ +++||+|+|..+++|+. +...+|+++.|+|||||.|++..+
T Consensus 98 ~~~-~~~fD~V~~~~~~~~~~-~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 98 YVA-NEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CCC-SSCEEEEEEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCc-CCCCCEEEECCChHhcC-CHHHHHHHHHHHcCCCeEEEEecC
Confidence 888 88999999999997776 479999999999999999999865
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-14 Score=135.06 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=101.0
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc--CCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER--GVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~er--gv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
+.+|||||||+|.++..|++++ ++++|++ +.+++.+.++ ...+.+..+|...+++++++||+|++..+++|
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s-----~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGYKAVGVDIS-----EVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESC-----HHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred CCeEEEEcCCCCHHHHHHHHcCCeEEEEECC-----HHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 3489999999999999999885 4555554 4555566555 34688899999999999999999999999988
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcc----hhhhHhhhhhHHHHHHhhcceeeeeeccEEEEecc
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRT----TEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKP 370 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t----~e~L~~~~~~ie~la~~l~w~~v~~~~~~aIwqKP 370 (544)
+. ++..++.++.++|||||+|+++.+..........+... .........+++.+++..+|+.+... .+|...
T Consensus 129 ~~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~---~~~~~~ 204 (242)
T 3l8d_A 129 TE-EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI---GVYKRG 204 (242)
T ss_dssp SS-CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE---EEECTT
T ss_pred cc-CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee---cccccC
Confidence 75 57899999999999999999987422211111000000 00000122457788999999887653 345544
Q ss_pred C
Q 009069 371 T 371 (544)
Q Consensus 371 ~ 371 (544)
.
T Consensus 205 ~ 205 (242)
T 3l8d_A 205 V 205 (242)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-13 Score=128.90 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~ 275 (544)
.....+.+.+.+.... .+|||+|||+|.++..|+++ .++++|+++.++..+..... ..+. .+.+..+|...
T Consensus 29 ~~~~~~~~~~~~~~~~---~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~ 104 (219)
T 3dlc_A 29 YPIIAENIINRFGITA---GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIA-DANLNDRIQIVQGDVHN 104 (219)
T ss_dssp HHHHHHHHHHHHCCCE---EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEECBTTB
T ss_pred cHHHHHHHHHhcCCCC---CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-hccccCceEEEEcCHHH
Confidence 3444555655554332 28999999999999999886 57888887776655544333 3343 58889999999
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccc----------cccCCCcch--hhhHhhh
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES----------HWKGWNRTT--EDLKSEQ 343 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~----------~~~~w~~t~--e~L~~~~ 343 (544)
+++++++||+|++..+++|+ .+...++.++.|+|||||.+++..+...... ....|.... .......
T Consensus 105 ~~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T 3dlc_A 105 IPIEDNYADLIVSRGSVFFW-EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENV 183 (219)
T ss_dssp CSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHH
T ss_pred CCCCcccccEEEECchHhhc-cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCH
Confidence 99999999999999999887 4589999999999999999999864222100 000111100 0011123
Q ss_pred hhHHHHHHhhcceeee
Q 009069 344 NGIETIARSLCWKKLI 359 (544)
Q Consensus 344 ~~ie~la~~l~w~~v~ 359 (544)
++++.+++..+|+.+.
T Consensus 184 ~~~~~~l~~aGf~~v~ 199 (219)
T 3dlc_A 184 ERFQNVLDEIGISSYE 199 (219)
T ss_dssp HHHHHHHHHHTCSSEE
T ss_pred HHHHHHHHHcCCCeEE
Confidence 5678888999997664
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=138.58 Aligned_cols=101 Identities=8% Similarity=-0.010 Sum_probs=77.0
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHH------------cCCCeEEEEeccccCCCCC-CCe
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE------------RGVPALIGVMASIRLPYPS-RAF 283 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~e------------rgv~~~~~v~d~~~LPfpd-~sF 283 (544)
+.+|||+|||+|..+..|++++ |+++|+++.++..++.+.... ...++.+.++|...+++++ ++|
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~f 102 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHC 102 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSE
T ss_pred CCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCE
Confidence 3489999999999999999875 667777666664443221110 1346789999999999876 899
Q ss_pred eEEEecccccccccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 284 DMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
|+|++..+++|++... ..+++++.|+|||||++++.
T Consensus 103 D~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 103 AAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred EEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999999998876533 57999999999999985444
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-14 Score=139.62 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=84.7
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEeccccCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLP 277 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~LP 277 (544)
++.+..++......+.+|||||||+|.++..|+++ .++++|+++.++..++.+..... ..++.+..+|...+|
T Consensus 57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~ 136 (261)
T 4gek_A 57 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 136 (261)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc
Confidence 33344444322233448999999999999999875 36788888877765554433222 236888999998888
Q ss_pred CCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++ .||+|+++.+++++.+.. ..+|+++.|+|||||.|+++..
T Consensus 137 ~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 137 IE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp CC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 75 599999999997776433 5789999999999999999864
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=131.95 Aligned_cols=147 Identities=13% Similarity=0.171 Sum_probs=99.0
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCee
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFD 284 (544)
+.+.+.... +.+|||+|||+|.++..|++++ ++++|++ +.+++.+.++.. .+.+..+|...++++ ++||
T Consensus 37 ~l~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s-----~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD 108 (220)
T 3hnr_A 37 ILEDVVNKS--FGNVLEFGVGTGNLTNKLLLAGRTVYGIEPS-----REMRMIAKEKLPKEFSITEGDFLSFEVP-TSID 108 (220)
T ss_dssp HHHHHHHTC--CSEEEEECCTTSHHHHHHHHTTCEEEEECSC-----HHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCS
T ss_pred HHHHhhccC--CCeEEEeCCCCCHHHHHHHhCCCeEEEEeCC-----HHHHHHHHHhCCCceEEEeCChhhcCCC-CCeE
Confidence 334443333 3489999999999999999875 4555554 445555555543 577888899999988 9999
Q ss_pred EEEecccccccccChHH--HHHHHHHcccCCcEEEEEeCCCCccccc---------cCCCcchhhhHh----hhhhHHHH
Q 009069 285 MAHCSRCLIPWGQYDGL--YLIEVDRVLRPGGYWILSGPPVNWESHW---------KGWNRTTEDLKS----EQNGIETI 349 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~--~L~Ei~RVLKPGG~Lvis~pp~~w~~~~---------~~w~~t~e~L~~----~~~~ie~l 349 (544)
+|++..+++|+.+ +.. +|.++.|+|||||.+++..+........ .++......... ..++++.+
T Consensus 109 ~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (220)
T 3hnr_A 109 TIVSTYAFHHLTD-DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTI 187 (220)
T ss_dssp EEEEESCGGGSCH-HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHH
T ss_pred EEEECcchhcCCh-HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHH
Confidence 9999999988775 544 9999999999999999997522110000 000000011110 23568889
Q ss_pred HHhhcceeeeeecc
Q 009069 350 ARSLCWKKLIQKKD 363 (544)
Q Consensus 350 a~~l~w~~v~~~~~ 363 (544)
+++.||+.+.....
T Consensus 188 l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 188 FENNGFHVTFTRLN 201 (220)
T ss_dssp HHHTTEEEEEEECS
T ss_pred HHHCCCEEEEeecc
Confidence 99999987765443
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-13 Score=135.09 Aligned_cols=119 Identities=24% Similarity=0.427 Sum_probs=92.8
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecc
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMAS 273 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~ 273 (544)
.......+.+.+.+.+..+ .+|||||||+|.++..++++ .++++|+++.++..+... +...+. .+.+..+|.
T Consensus 44 ~~~~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~ 120 (273)
T 3bus_A 44 DATDRLTDEMIALLDVRSG--DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR-ATAAGLANRVTFSYADA 120 (273)
T ss_dssp HHHHHHHHHHHHHSCCCTT--CEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHH-HHhcCCCcceEEEECcc
Confidence 3445555666666655544 48999999999999999874 577888877666544433 333343 488889999
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 274 ~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..+|+++++||+|++..+++|+. +...+|.++.|+|||||++++..+
T Consensus 121 ~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 121 MDLPFEDASFDAVWALESLHHMP-DRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp TSCCSCTTCEEEEEEESCTTTSS-CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccCCCCCCCccEEEEechhhhCC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99999999999999999997775 478999999999999999999864
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=139.37 Aligned_cols=151 Identities=13% Similarity=0.130 Sum_probs=100.9
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC-
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL- 276 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L- 276 (544)
..+...+.+.+.++... .+.+|||||||+|.++..|++++ ++++|+ ++.+++.+.++ +.+..+|...+
T Consensus 24 ~~~~~~~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~-----s~~~~~~a~~~---~~~~~~d~~~~~ 94 (240)
T 3dli_A 24 SRELVKARLRRYIPYFK-GCRRVLDIGCGRGEFLELCKEEGIESIGVDI-----NEDMIKFCEGK---FNVVKSDAIEYL 94 (240)
T ss_dssp CHHHHHHHHGGGGGGTT-TCSCEEEETCTTTHHHHHHHHHTCCEEEECS-----CHHHHHHHHTT---SEEECSCHHHHH
T ss_pred CHHHHHHHHHHHHhhhc-CCCeEEEEeCCCCHHHHHHHhCCCcEEEEEC-----CHHHHHHHHhh---cceeeccHHHHh
Confidence 34445555555554222 23489999999999999998874 555555 45566666655 56777777665
Q ss_pred -CCCCCCeeEEEecccccccccC-hHHHHHHHHHcccCCcEEEEEeCCCCcccccc-CCCcchhhhHhhhhhHHHHHHhh
Q 009069 277 -PYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSGPPVNWESHWK-GWNRTTEDLKSEQNGIETIARSL 353 (544)
Q Consensus 277 -Pfpd~sFDlV~~~~~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~-~w~~t~e~L~~~~~~ie~la~~l 353 (544)
++++++||+|+|..+++|+.+. ...++.++.|+|||||+|++..+......... .|...........+.+..++++.
T Consensus 95 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 174 (240)
T 3dli_A 95 KSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYL 174 (240)
T ss_dssp HTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHH
T ss_pred hhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHC
Confidence 8889999999999999888752 28999999999999999999876322111000 00011111111224577888889
Q ss_pred cceeee
Q 009069 354 CWKKLI 359 (544)
Q Consensus 354 ~w~~v~ 359 (544)
+|+.+.
T Consensus 175 Gf~~~~ 180 (240)
T 3dli_A 175 GFRDVK 180 (240)
T ss_dssp TCEEEE
T ss_pred CCeEEE
Confidence 998654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=127.78 Aligned_cols=109 Identities=16% Similarity=0.242 Sum_probs=85.1
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCee
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFD 284 (544)
+.+.+....+ .+|||+|||+|.++..|+++ .++++|+++.++..+..... ..+. .+.+..+|...+++ +++||
T Consensus 24 l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~-~~~~D 99 (199)
T 2xvm_A 24 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKS-IENLDNLHTRVVDLNNLTF-DRQYD 99 (199)
T ss_dssp HHHHTTTSCS--CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HHTCTTEEEEECCGGGCCC-CCCEE
T ss_pred HHHHhhccCC--CeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHH-hCCCCCcEEEEcchhhCCC-CCCce
Confidence 4445544433 48999999999999999987 47788887776655544333 3344 68888899988888 88999
Q ss_pred EEEeccccccccc-ChHHHHHHHHHcccCCcEEEEEe
Q 009069 285 MAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 285 lV~~~~~l~h~~~-d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|++..+++|+.. +...++.++.++|||||++++..
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 9999999988764 34889999999999999988865
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=139.62 Aligned_cols=149 Identities=9% Similarity=0.046 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEeccccC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRL 276 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~erg---v~~~~~v~d~~~L 276 (544)
.++..+.+.+... .+.+|||||||+|.++..|+++ .++++|+++.++. .++++. ..+.+..+|...+
T Consensus 80 ~~~~~~l~~l~~~--~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~-----~a~~~~~~~~~~~~~~~d~~~~ 152 (254)
T 1xtp_A 80 EGSRNFIASLPGH--GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLE-----EAKRELAGMPVGKFILASMETA 152 (254)
T ss_dssp HHHHHHHHTSTTC--CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHH-----HHHHHTTTSSEEEEEESCGGGC
T ss_pred HHHHHHHHhhccc--CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHH-----HHHHHhccCCceEEEEccHHHC
Confidence 3344444444333 3458999999999999998876 3778888765554 333332 3578888899999
Q ss_pred CCCCCCeeEEEeccccccccc-ChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcc
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 355 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~-d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w 355 (544)
++++++||+|++..+++|+.+ +...+|.++.|+|||||+|++..+.......... ..........+.+..++++.+|
T Consensus 153 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~aGf 230 (254)
T 1xtp_A 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD--KEDSSLTRSDIHYKRLFNESGV 230 (254)
T ss_dssp CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE--TTTTEEEBCHHHHHHHHHHHTC
T ss_pred CCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceec--ccCCcccCCHHHHHHHHHHCCC
Confidence 999999999999999988864 3489999999999999999998742111100000 0001111123557778888899
Q ss_pred eeeee
Q 009069 356 KKLIQ 360 (544)
Q Consensus 356 ~~v~~ 360 (544)
+.+..
T Consensus 231 ~~~~~ 235 (254)
T 1xtp_A 231 RVVKE 235 (254)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 87654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=133.40 Aligned_cols=143 Identities=15% Similarity=0.054 Sum_probs=99.3
Q ss_pred CEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
.+|||||||+|.++..|+++ .++++|+++. +++.+.++.. .+.+.++|...+ +++++||+|++..+++|+.
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~-----~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFNDITCVEASEE-----AISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCSCEEEEESCHH-----HHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS
T ss_pred CcEEEECCCCCHHHHHHHHhCCcEEEEeCCHH-----HHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc
Confidence 47999999999999999987 4677777554 4445554433 678888888877 5788999999999998876
Q ss_pred cChHHHHHHHH-HcccCCcEEEEEeCCCCccc--------cccCCCc-chhh------hHhhhhhHHHHHHhhcceeeee
Q 009069 297 QYDGLYLIEVD-RVLRPGGYWILSGPPVNWES--------HWKGWNR-TTED------LKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 297 ~d~~~~L~Ei~-RVLKPGG~Lvis~pp~~w~~--------~~~~w~~-t~e~------L~~~~~~ie~la~~l~w~~v~~ 360 (544)
++..+|+++. |+|||||+|+++.+...... ....+.. .... .....+++..+++..+|+.+..
T Consensus 118 -~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 196 (250)
T 2p7i_A 118 -DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 196 (250)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence 4799999999 99999999999986432110 0000000 0000 0112356778889999988775
Q ss_pred eccEEEEeccCC
Q 009069 361 KKDLAIWQKPTN 372 (544)
Q Consensus 361 ~~~~aIwqKP~~ 372 (544)
. .+.-+|..
T Consensus 197 ~---~~~~~p~~ 205 (250)
T 2p7i_A 197 S---GIFFKALA 205 (250)
T ss_dssp E---EEEECCSC
T ss_pred e---eeEecCCc
Confidence 4 23445543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=130.36 Aligned_cols=116 Identities=11% Similarity=0.129 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC------CeEEEEe
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV------PALIGVM 271 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv------~~~~~v~ 271 (544)
....+.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++..+...... .+. .+.+..+
T Consensus 15 ~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~ 91 (219)
T 3jwg_A 15 QQRLGTVVAVLKSVNA--KKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKI-DRLPEMQRKRISLFQS 91 (219)
T ss_dssp HHHHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTG-GGSCHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHhhcCC--CEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHh-hccccccCcceEEEeC
Confidence 3344556566654443 48999999999999999875 477888877666544433321 121 5788888
Q ss_pred ccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 272 ASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 272 d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|...+++++++||+|+|..+++|+.+.. ..+++++.++|||||.++...
T Consensus 92 d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 92 SLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp CSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 9888888889999999999998886422 689999999999999666653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=133.47 Aligned_cols=117 Identities=16% Similarity=0.131 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~ 275 (544)
.......+.+.+. ....+.+|||||||+|.++..+++. .++++|+++.++..+.... ...++ .+.+..+|...
T Consensus 30 ~~~~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 30 SPEVTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNA-RQSGLQNRVTGIVGSMDD 107 (267)
T ss_dssp CHHHHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECCTTS
T ss_pred CHHHHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHH-HHcCCCcCcEEEEcChhh
Confidence 3445555666655 1223458999999999999999986 5788888887665554433 34444 38899999999
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|+++++||+|+|..+++|+ +...+++++.++|||||++++..+
T Consensus 108 ~~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 108 LPFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp CCCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999999999999999887 578999999999999999999865
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=134.99 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=83.9
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~s 282 (544)
.+.+.+++......+.+|||||||+|.++..|++++ ++++|++ +.+++.+.++...+.+..+|...+++ +++
T Consensus 37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s-----~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~ 110 (263)
T 3pfg_A 37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELS-----ADMLAIARRRNPDAVLHHGDMRDFSL-GRR 110 (263)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESC-----HHHHHHHHHHCTTSEEEECCTTTCCC-SCC
T ss_pred HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECC-----HHHHHHHHhhCCCCEEEECChHHCCc-cCC
Confidence 334444443222234589999999999999999885 5566664 45556666665578889999998887 789
Q ss_pred eeEEEecc-ccccccc--ChHHHHHHHHHcccCCcEEEEEe
Q 009069 283 FDMAHCSR-CLIPWGQ--YDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 283 FDlV~~~~-~l~h~~~--d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
||+|+|.. +++|+.. +...+|.++.++|||||.|++..
T Consensus 111 fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 111 FSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp EEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999998 8988753 34789999999999999999973
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=134.23 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=80.8
Q ss_pred CCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHc--CCCeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER--GVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~er--gv~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
.+.+|||||||+|.++..|++.+ ++++|+++. +++.++++ ...+.+..+|...+++++++||+|+|..++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 118 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSER-----MLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLAL 118 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHH-----HHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhh
Confidence 34589999999999999999874 566666554 44455444 346889999999999999999999999999
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|+ .+...+|+++.|+|||||.|+++.+
T Consensus 119 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 119 HYI-ASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp GGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhh-hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 777 4589999999999999999999853
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-13 Score=129.49 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
+...+.+.+++......+.+|||+|||+|.++..|++.+ ++++|+++.++..+.... ...+..+.+..+|...++++
T Consensus 21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~ 99 (246)
T 1y8c_A 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF-RSQGLKPRLACQDISNLNIN 99 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHH-HHTTCCCEEECCCGGGCCCS
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHH-hhcCCCeEEEecccccCCcc
Confidence 445556666665442345589999999999999999874 677788776665554433 23344788888899888877
Q ss_pred CCCeeEEEecc-cccccc--cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSR-CLIPWG--QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~-~l~h~~--~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|++.. +++|+. .+...+|.++.++|||||.|+++.+
T Consensus 100 -~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 100 -RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp -CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 8899999998 998884 2348999999999999999999754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-14 Score=136.32 Aligned_cols=139 Identities=12% Similarity=0.080 Sum_probs=96.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+.+|||||||+|.++..|+++ .++++|+++.++..+...........+.+...|...+++++++||+|++..+++|+
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 159 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL 159 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhC
Confidence 558999999999999998876 46788887766644443322211234678888998999888899999999999888
Q ss_pred ccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 296 GQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 296 ~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
.+.. ..+|.++.|+|||||+|++..+...... .|...........+++..+++..+|+.+..
T Consensus 160 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 160 TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV---ILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE---EEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcc---eecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 7522 4899999999999999999864211100 011111111113456777888889977654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=133.56 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccc
Q 009069 201 ADAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASI 274 (544)
Q Consensus 201 a~~~i~~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~ 274 (544)
.......+.+.+. +.. +.+|||||||+|.++..+++. .++++|+++.++..+... +...++. +.+..+|..
T Consensus 30 ~~~~~~~~l~~l~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~ 106 (257)
T 3f4k_A 30 SPEATRKAVSFINELTD--DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN-AVKANCADRVKGITGSMD 106 (257)
T ss_dssp CHHHHHHHHTTSCCCCT--TCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTT
T ss_pred CHHHHHHHHHHHhcCCC--CCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECChh
Confidence 3445555555553 333 348999999999999999886 578888888766554433 3344543 889999999
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+|+++++||+|+|..+++|+ +...++.++.|+|||||++++..+
T Consensus 107 ~~~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 107 NLPFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp SCSSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hCCCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999999999999887 478999999999999999999874
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-13 Score=129.87 Aligned_cols=133 Identities=12% Similarity=0.127 Sum_probs=92.9
Q ss_pred CEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHH-cCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE-RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~e-rgv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
.+|||||||+|.++..|++.+ ++++|+++.++..+....... ....+.+.++|...++ ++++||+|++..+++|+.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 146 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIE 146 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSC
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCC
Confidence 389999999999999998874 566777665554333222210 1124788888988877 556999999999998876
Q ss_pred c-ChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 297 Q-YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 297 ~-d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
. +...++.++.++|||||+|++...+.........|.. ..+++..+++..+|+.+..
T Consensus 147 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 147 PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKV-------DVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCC-------CHHHHHHHHGGGTEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccC-------CHHHHHHHHHHcCCeEEEE
Confidence 4 2488999999999999999998754332111111221 2345677888888987653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=137.16 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=85.3
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CCCCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP-YPSRA 282 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP-fpd~s 282 (544)
+.+++......+.+|||||||+|.++..|++. .++++|+++.++..+..... ..++ .+.+..+|...++ +++++
T Consensus 58 l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~ 136 (285)
T 4htf_A 58 LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAE-AKGVSDNMQFIHCAAQDVASHLETP 136 (285)
T ss_dssp HHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-C-CCGGGEEEEESCGGGTGGGCSSC
T ss_pred HHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCcceEEEEcCHHHhhhhcCCC
Confidence 33444322233458999999999999999987 46777777666544443322 2343 4788889998888 78899
Q ss_pred eeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 283 FDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
||+|+|..+++|+. ++..+|.++.|+|||||+|++..+
T Consensus 137 fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 137 VDLILFHAVLEWVA-DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp EEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceEEEECchhhccc-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99999999997775 579999999999999999999864
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=125.09 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=79.7
Q ss_pred HHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEE
Q 009069 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAH 287 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~ 287 (544)
+.+.... +.+|||+|||+|.++..+++. .++++|+++ .+++.+.++...+.+...| +++++++||+|+
T Consensus 11 ~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~ 80 (170)
T 3i9f_A 11 PNIFEGK--KGVIVDYGCGNGFYCKYLLEFATKLYCIDINV-----IALKEVKEKFDSVITLSDP---KEIPDNSVDFIL 80 (170)
T ss_dssp HHHHSSC--CEEEEEETCTTCTTHHHHHTTEEEEEEECSCH-----HHHHHHHHHCTTSEEESSG---GGSCTTCEEEEE
T ss_pred HhcCcCC--CCeEEEECCCCCHHHHHHHhhcCeEEEEeCCH-----HHHHHHHHhCCCcEEEeCC---CCCCCCceEEEE
Confidence 3344443 348999999999999999987 466666654 4455555555567777766 788899999999
Q ss_pred ecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..+++|+. +...+++++.|+|||||++++...
T Consensus 81 ~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 81 FANSFHDMD-DKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp EESCSTTCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Eccchhccc-CHHHHHHHHHHhcCCCCEEEEEEc
Confidence 999998775 589999999999999999999864
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-13 Score=135.36 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=87.6
Q ss_pred HHHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 009069 206 DDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYP 279 (544)
Q Consensus 206 ~~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfp 279 (544)
+.+.+.+. +.. +.+|||||||+|.++..|+++ .++++|+++.++..+... +...++ .+.+..+|...+|++
T Consensus 106 ~~l~~~l~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~ 182 (312)
T 3vc1_A 106 EFLMDHLGQAGP--DDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRR-ARELRIDDHVRSRVCNMLDTPFD 182 (312)
T ss_dssp HHHHTTSCCCCT--TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHHHhccCCC--CCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhcCCCC
Confidence 33444444 333 458999999999999999876 477788877666544433 334454 488999999999999
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||+|++..+++|+ + ...+|.++.|+|||||+|++..+
T Consensus 183 ~~~fD~V~~~~~l~~~-~-~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 183 KGAVTASWNNESTMYV-D-LHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp TTCEEEEEEESCGGGS-C-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEeEEEECCchhhC-C-HHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999999999999877 3 89999999999999999999864
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=128.65 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC------CeEEEEec
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV------PALIGVMA 272 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv------~~~~~v~d 272 (544)
...+.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++..+...+. ..+. .+.+..+|
T Consensus 16 ~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d 92 (217)
T 3jwh_A 16 QRMNGVVAALKQSNA--RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD-RLRLPRNQWERLQLIQGA 92 (217)
T ss_dssp HHHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHT-TCCCCHHHHTTEEEEECC
T ss_pred HHHHHHHHHHHhcCC--CEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHH-HhcCCcccCcceEEEeCC
Confidence 344556666654444 38999999999999999875 47788887766654443322 2222 57888888
Q ss_pred cccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 273 SIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 273 ~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
...+++++++||+|+|..+++|+.+.. ..+++++.|+|||||.++++.
T Consensus 93 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp TTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 877777788999999999998886422 789999999999999777764
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=129.34 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=92.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+|||||||+|.++..|++++ ++++|+++.+ ++.+.++. .+.+..++...++ ++++||+|+|+.+++|+.
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~-----~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 116 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGFDVDATDGSPEL-----AAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVP 116 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHH-----HHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSC
T ss_pred CCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHH-----HHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcC
Confidence 3489999999999999999875 5666665544 44444431 3456677888888 889999999999998887
Q ss_pred c-ChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhc-ceeeee
Q 009069 297 Q-YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLC-WKKLIQ 360 (544)
Q Consensus 297 ~-d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~-w~~v~~ 360 (544)
. +...+|+++.|+|||||+|++..+......... +... ......+.+..+++..+ |+.+..
T Consensus 117 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 117 RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK-LARY--YNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT-TSCE--ECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc-cchh--ccCCCHHHHHHHHHhCCCcEEEEE
Confidence 3 247999999999999999999865433211100 0000 00112355778888889 987754
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-13 Score=131.41 Aligned_cols=101 Identities=19% Similarity=0.326 Sum_probs=83.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||||||+|.++..++++ .++++|+++.++..+..... ..++ ++.+...|...+++++++||+|++..+++
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 116 (276)
T 3mgg_A 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTE-KNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLE 116 (276)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGG
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEcccccCCCCCCCeeEEEEechhh
Confidence 458999999999999999876 47788887766655444333 3343 58888999999999999999999999997
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+.+ +..++.++.|+|||||++++..+
T Consensus 117 ~~~~-~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 117 HLQS-PEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp GCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcCC-HHHHHHHHHHHcCCCcEEEEEEc
Confidence 7764 78999999999999999999864
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-13 Score=134.34 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHH-----------------HcCCCeEEEEeccccCCCC
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFAL-----------------ERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~-----------------ergv~~~~~v~d~~~LPfp 279 (544)
+.+|||+|||+|..+..|+++| |+++|+++.++..+..+... ..+..+.+.++|+..+++.
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~ 148 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRA 148 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGG
T ss_pred CCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcc
Confidence 3489999999999999999986 56666666555433222110 0124688999999999876
Q ss_pred C-CCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 280 S-RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 280 d-~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+ ++||+|++..++++++... ..++.++.|+|||||.|++.+
T Consensus 149 ~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 149 NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 4 8999999999998886533 679999999999999997653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-13 Score=125.82 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=83.9
Q ss_pred HHHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCC
Q 009069 206 DDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPSR 281 (544)
Q Consensus 206 ~~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LPfpd~ 281 (544)
+.+.+.+. ... +.+|||||||+|.++..|++++ ++++|++ +.+++.+.+.+ .++.+..+|...+ ++++
T Consensus 35 ~~~~~~l~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s-----~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~ 106 (218)
T 3ou2_A 35 PAALERLRAGNI--RGDVLELASGTGYWTRHLSGLADRVTALDGS-----AEMIAEAGRHGLDNVEFRQQDLFDW-TPDR 106 (218)
T ss_dssp HHHHHHHTTTTS--CSEEEEESCTTSHHHHHHHHHSSEEEEEESC-----HHHHHHHGGGCCTTEEEEECCTTSC-CCSS
T ss_pred HHHHHHHhcCCC--CCeEEEECCCCCHHHHHHHhcCCeEEEEeCC-----HHHHHHHHhcCCCCeEEEecccccC-CCCC
Confidence 34555554 333 3489999999999999998875 5556654 45555565555 5688888998887 7889
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|+++.+++|+.+.. ..+|+++.|+|||||.|++..+
T Consensus 107 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 107 QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999999999998887532 7899999999999999999864
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-13 Score=130.24 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=79.0
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+|||||||+|.++..|++++ ++++|+++.++..+.... ......+.+.++|...+++++++||+|++..+++|+.
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 118 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVP 118 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCT
T ss_pred CCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCchhhcC
Confidence 4589999999999999998874 666677655443333222 1113468889999999999999999999999996665
Q ss_pred cChHHHHHHHHHcccCCcEEEEE
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
+...++.++.|+|||||.+++.
T Consensus 119 -~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 119 -DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp -THHHHHHHHHHHEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHCCCCcEEEEE
Confidence 5789999999999999999998
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=121.12 Aligned_cols=122 Identities=15% Similarity=0.101 Sum_probs=90.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEec-cccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCS-RCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~-~~l~h~ 295 (544)
+.+|||+|||+|.++..+++.+ ++++|++ +.+++.+.++...+.+...|...+++++++||+|++. .+++++
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~-----~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGHDVLGTDLD-----PILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGS
T ss_pred CCeEEEECCCCCHHHHHHHHCCCcEEEEcCC-----HHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhc
Confidence 4489999999999999999875 4555554 4555566666556788888988888888999999998 566555
Q ss_pred cc-ChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 296 GQ-YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 296 ~~-d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
.. +...++.++.++|||||.+++..+.... ...+.+..+.+..+|+.+..
T Consensus 122 ~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~---------------~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 122 AEDGREPALANIHRALGADGRAVIGFGAGRG---------------WVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEETTSS---------------CCHHHHHHHHHHHTEEEEEE
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCC---------------cCHHHHHHHHHHcCCEEeee
Confidence 43 2278999999999999999998653210 11234666777888876654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.43 E-value=8e-13 Score=127.67 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEeccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASI 274 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg---v~~~~~v~d~~ 274 (544)
....+.+.+++.. ...+.+|||||||+|.++..+++. .++++|+++.++ +.++++. ..+.+..+|..
T Consensus 29 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~~~d~~ 102 (234)
T 3dtn_A 29 DDFYGVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKML-----EIAKNRFRGNLKVKYIEADYS 102 (234)
T ss_dssp HHHHHHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHH-----HHHHHHTCSCTTEEEEESCTT
T ss_pred HHHHHHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHH-----HHHHHhhccCCCEEEEeCchh
Confidence 4444556666542 233458999999999999999886 466777765544 4444332 26888999999
Q ss_pred cCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 275 RLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.++++ ++||+|++..+++|+.+.. ..+++++.|+|||||.|++..+
T Consensus 103 ~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 103 KYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp TCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99887 8999999999998886422 3699999999999999999863
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=133.75 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
....+.+.+.+....+ .+|||||||+|.++..|++.+ ++++|++ +.+++.+.++. ++.+.++|...+|++
T Consensus 20 ~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s-----~~~~~~a~~~~-~~~~~~~d~~~~~~~ 91 (261)
T 3ege_A 20 IRIVNAIINLLNLPKG--SVIADIGAGTGGYSVALANQGLFVYAVEPS-----IVMRQQAVVHP-QVEWFTGYAENLALP 91 (261)
T ss_dssp HHHHHHHHHHHCCCTT--CEEEEETCTTSHHHHHHHTTTCEEEEECSC-----HHHHHSSCCCT-TEEEECCCTTSCCSC
T ss_pred HHHHHHHHHHhCCCCC--CEEEEEcCcccHHHHHHHhCCCEEEEEeCC-----HHHHHHHHhcc-CCEEEECchhhCCCC
Confidence 3456667777765443 489999999999999999875 4555554 45555554443 788999999999999
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||+|+|..+++|+. +...+++++.|+|| ||++++..+
T Consensus 92 ~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 92 DKSVDGVISILAIHHFS-HLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp TTCBSEEEEESCGGGCS-SHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred CCCEeEEEEcchHhhcc-CHHHHHHHHHHHhC-CcEEEEEEc
Confidence 99999999999998884 58999999999999 998888754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.9e-13 Score=131.78 Aligned_cols=106 Identities=15% Similarity=0.189 Sum_probs=82.8
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFD 284 (544)
.+.+.+.... +.+|||||||+|.++..|++.+ ++++|+++ .+++.+.++...+.+.++|...+|+ +++||
T Consensus 48 ~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD 119 (279)
T 3ccf_A 48 DLLQLLNPQP--GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAA-----TMIEKARQNYPHLHFDVADARNFRV-DKPLD 119 (279)
T ss_dssp HHHHHHCCCT--TCEEEEETCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHCTTSCEEECCTTTCCC-SSCEE
T ss_pred HHHHHhCCCC--CCEEEEecCCCCHHHHHHHhCCCeEEEEECCH-----HHHHHHHhhCCCCEEEECChhhCCc-CCCcC
Confidence 3445554444 3489999999999999998864 56666655 4445555554567788889988887 57999
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|++..+++|+. ++..+|.++.|+|||||+|++..+
T Consensus 120 ~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 120 AVFSNAMLHWVK-EPEAAIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp EEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcchhhhCc-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999996665 589999999999999999999865
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-13 Score=131.33 Aligned_cols=98 Identities=24% Similarity=0.411 Sum_probs=79.9
Q ss_pred CCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
.+.+|||||||+|.++..|++++ ++++|+++ .+++.+.++.... +..+|...+++++++||+|++..+++|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 127 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSK-----EMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSY 127 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCH-----HHHHHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhc
Confidence 34589999999999999999875 56666654 4445555554322 7778888999999999999999888888
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..+...+|.++.|+|||||.|++..+
T Consensus 128 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 128 VENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 77789999999999999999999875
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-14 Score=148.45 Aligned_cols=153 Identities=11% Similarity=0.078 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEE---EEeccccCC
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALI---GVMASIRLP 277 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~---~v~d~~~LP 277 (544)
...+.+.+.+.+.... +.+|||||||+|.++..|++++..++.+ |+++.+++.|.+++.+... ...+...++
T Consensus 92 ~~~~~~~l~~~~~~~~--~~~VLDiGcG~G~~~~~l~~~g~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 166 (416)
T 4e2x_A 92 FAMLARDFLATELTGP--DPFIVEIGCNDGIMLRTIQEAGVRHLGF---EPSSGVAAKAREKGIRVRTDFFEKATADDVR 166 (416)
T ss_dssp HHHHHHHHHHTTTCSS--SCEEEEETCTTTTTHHHHHHTTCEEEEE---CCCHHHHHHHHTTTCCEECSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--CCEEEEecCCCCHHHHHHHHcCCcEEEE---CCCHHHHHHHHHcCCCcceeeechhhHhhcc
Confidence 3445555655555443 4489999999999999999986655555 4456677777777655432 223455667
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccc---cccCCCcchhhhHhhhhhHHHHHHhhc
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES---HWKGWNRTTEDLKSEQNGIETIARSLC 354 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~---~~~~w~~t~e~L~~~~~~ie~la~~l~ 354 (544)
+++++||+|++..+++|+. ++..+|+++.|+|||||+|++..+...... .+..+.. ........+.++.++++.+
T Consensus 167 ~~~~~fD~I~~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~l~~ll~~aG 244 (416)
T 4e2x_A 167 RTEGPANVIYAANTLCHIP-YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFD-EHFFLFSATSVQGMAQRCG 244 (416)
T ss_dssp HHHCCEEEEEEESCGGGCT-THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCST-TCCEECCHHHHHHHHHHTT
T ss_pred cCCCCEEEEEECChHHhcC-CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhh-hhhhcCCHHHHHHHHHHcC
Confidence 7789999999999998887 589999999999999999999865311100 0000000 0001112356778899999
Q ss_pred ceeeee
Q 009069 355 WKKLIQ 360 (544)
Q Consensus 355 w~~v~~ 360 (544)
|+.+..
T Consensus 245 f~~~~~ 250 (416)
T 4e2x_A 245 FELVDV 250 (416)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 987653
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=122.54 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=95.0
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC---CCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL---PYPSR 281 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L---Pfpd~ 281 (544)
.+.+.+....+ .+|||||||+|.++..|++++ ++++|+ ++.+++.+.++ ....+...+...+ ++..+
T Consensus 43 ~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~vD~-----s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~ 114 (227)
T 3e8s_A 43 AILLAILGRQP--ERVLDLGCGEGWLLRALADRGIEAVGVDG-----DRTLVDAARAA-GAGEVHLASYAQLAEAKVPVG 114 (227)
T ss_dssp HHHHHHHHTCC--SEEEEETCTTCHHHHHHHTTTCEEEEEES-----CHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCC
T ss_pred HHHHHhhcCCC--CEEEEeCCCCCHHHHHHHHCCCEEEEEcC-----CHHHHHHHHHh-cccccchhhHHhhcccccccC
Confidence 34444444433 489999999999999999885 455555 45556666666 3456666666655 55544
Q ss_pred -CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCcccc---ccC-----CCcch------hhhHhhhhhH
Q 009069 282 -AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESH---WKG-----WNRTT------EDLKSEQNGI 346 (544)
Q Consensus 282 -sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~---~~~-----w~~t~------e~L~~~~~~i 346 (544)
+||+|+|..+++ ..+...+++++.++|||||+|++..+....... ... |.... .......+++
T Consensus 115 ~~fD~v~~~~~l~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T 3e8s_A 115 KDYDLICANFALL--HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASW 192 (227)
T ss_dssp CCEEEEEEESCCC--SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHH
T ss_pred CCccEEEECchhh--hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHH
Confidence 599999999996 556799999999999999999998752211100 000 11100 0011124567
Q ss_pred HHHHHhhcceeeee
Q 009069 347 ETIARSLCWKKLIQ 360 (544)
Q Consensus 347 e~la~~l~w~~v~~ 360 (544)
..++++.+|+.+..
T Consensus 193 ~~~l~~aGf~~~~~ 206 (227)
T 3e8s_A 193 LNALDMAGLRLVSL 206 (227)
T ss_dssp HHHHHHTTEEEEEE
T ss_pred HHHHHHcCCeEEEE
Confidence 78889999987753
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-13 Score=130.35 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=85.1
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
...+.+.+.... +.+|||||||+|.++..++++ .++++|+++.++ +.+.++...+.+..+|...++ ++
T Consensus 22 ~~~l~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~-----~~a~~~~~~~~~~~~d~~~~~-~~ 93 (259)
T 2p35_A 22 ARDLLAQVPLER--VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDML-----EKAADRLPNTNFGKADLATWK-PA 93 (259)
T ss_dssp HHHHHTTCCCSC--CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHH-----HHHHHHSTTSEEEECCTTTCC-CS
T ss_pred HHHHHHhcCCCC--CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHH-----HHHHHhCCCcEEEECChhhcC-cc
Confidence 334555554433 348999999999999998875 577788766544 455555556888899998888 78
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|+++.+++|+. +...+|.++.|+|||||+|++..+
T Consensus 94 ~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 94 QKADLLYANAVFQWVP-DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp SCEEEEEEESCGGGST-THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCcCEEEEeCchhhCC-CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 8999999999996664 589999999999999999999875
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-12 Score=123.15 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=92.7
Q ss_pred CCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc--CCCCCCCeeEEEeccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR--LPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~--LPfpd~sFDlV~~~~~l~ 293 (544)
...+|||+|||+|.++..+++.+ ++++|+ ++.+++.+.++.. .+...|... +++++++||+|++..+++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~-----~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~l~ 104 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGTRVSGIEA-----FPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDVLE 104 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTCEEEEEES-----SHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESCGG
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCCeEEEEeC-----CHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECChhh
Confidence 34589999999999999999875 455555 4455566655542 566677665 678889999999999998
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeCCCCccc-----cccCCCcc-------hhhhHhhhhhHHHHHHhhcceeeee
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES-----HWKGWNRT-------TEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~-----~~~~w~~t-------~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
|+. ++..++.++.++|||||.++++.+...... ....|... ........+++..++++.+|+.+..
T Consensus 105 ~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 182 (230)
T 3cc8_A 105 HLF-DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKV 182 (230)
T ss_dssp GSS-CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred hcC-CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEE
Confidence 776 478999999999999999999876322110 00011110 0001112456778888888876553
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=126.18 Aligned_cols=107 Identities=20% Similarity=0.263 Sum_probs=84.3
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSR 281 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~ 281 (544)
.+.+++.... +.+|||||||+|.++..+++++ ++++|++ +.+++.+.++.. .+.+..+|...++++++
T Consensus 34 ~l~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s-----~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 106 (243)
T 3bkw_A 34 ALRAMLPEVG--GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLS-----EKMLARARAAGPDTGITYERADLDKLHLPQD 106 (243)
T ss_dssp HHHHHSCCCT--TCEEEEETCTTCHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHTSCSSSEEEEECCGGGCCCCTT
T ss_pred HHHHhccccC--CCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCC-----HHHHHHHHHhcccCCceEEEcChhhccCCCC
Confidence 3555554433 3489999999999999999874 4556664 455556655532 47888889988998899
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|++..+++|+. +...+|.++.++|||||.|+++.+
T Consensus 107 ~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 107 SFDLAYSSLALHYVE-DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp CEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEEEeccccccc-hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 999999999997775 579999999999999999999864
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=119.05 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=93.3
Q ss_pred cCCceecCCCCCCCccc-HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHH
Q 009069 184 QGDRFSFPGGGTMFPRG-ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL 260 (544)
Q Consensus 184 ~ge~~~F~g~g~~F~~g-a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ 260 (544)
.+..+.|......|... .+...+.+.+.+.... +.+|||+|||+|.++..+++. .++++|+++.++..+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~- 95 (194)
T 1dus_A 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDK--DDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIK- 95 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCT--TCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH-
T ss_pred CCCceEEEeCCCcCCccccchHHHHHHHHcccCC--CCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHH-
Confidence 44455553332333222 2345556677766554 348999999999999999876 57788887766655544333
Q ss_pred HcCCC---eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 261 ERGVP---ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 261 ergv~---~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..+.. +.+...|... ++++++||+|+++..+++.......++.++.++|||||.+++..+
T Consensus 96 ~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 96 LNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HcCCCccceEEEECchhc-ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 33443 7888887765 455789999999988754334347899999999999999999975
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=130.71 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=78.8
Q ss_pred CCEEEEeCCCCcHHHHHHh--hC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLM--SR---NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La--~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~ 291 (544)
+.+|||||||+|.++..|+ .. .++++|+++.++..+.... ...+.. +.+..+|...++++ ++||+|+++.+
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 196 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLA-AGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGL 196 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSS
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECchhcCCcc-CCeEEEEECCh
Confidence 4589999999999999985 22 5788888776664444332 233333 88999999999988 99999999999
Q ss_pred ccccccChH--HHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYDG--LYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~~--~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++|+++... .++.++.|+|||||+|+++..
T Consensus 197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 988775332 489999999999999999863
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=119.73 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=74.7
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCC-CCCCCeeEEEeccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLP-YPSRAFDMAHCSRCLI 293 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LP-fpd~sFDlV~~~~~l~ 293 (544)
.+.+|||+|||+|.++..|+++ .|+++|+++.++..+..... +.+ .++.+...+...++ +.+++||+|+++....
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLS-DLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH-HHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHH-HcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 3458999999999999999986 57888888877765554443 334 35777776666643 5578999999874332
Q ss_pred cc--------ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PW--------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~--------~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+. ..+...++.++.|+|||||.|++...
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 32 12235789999999999999999864
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=129.88 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccc
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASI 274 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~ 274 (544)
.....++.+.+.+.+.++ .+|||||||+|.++..++++ .++++|+++.++..+.... .+.+. .+.+...|..
T Consensus 48 a~~~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~~ 124 (287)
T 1kpg_A 48 AQIAKIDLALGKLGLQPG--MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV-ANSENLRSKRVLLAGWE 124 (287)
T ss_dssp HHHHHHHHHHTTTTCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTCCCCSCEEEEESCGG
T ss_pred HHHHHHHHHHHHcCCCCc--CEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCCCeEEEECChh
Confidence 334445555555554444 48999999999999999843 5677777766554443322 22232 5778888887
Q ss_pred cCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 275 RLPYPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LPfpd~sFDlV~~~~~l~h~~~-d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+| ++||+|++..+++|+.. +...+|.++.|+|||||.+++..+
T Consensus 125 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 125 QFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp GCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 766 78999999999999863 468999999999999999999864
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=123.80 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=81.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+|||+|||+|.++..++++ .++++|+++.++..+.... ...+..+.+..+|...+++++++||+|+++.+++++.
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~ 117 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYA-KSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 117 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC
Confidence 458999999999999999887 4778888776665444333 2334678888999988888889999999998843333
Q ss_pred -cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 297 -QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 297 -~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+...++.++.++|||||.|++..+
T Consensus 118 ~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 118 PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 2347899999999999999999865
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.1e-13 Score=133.56 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc----CCCeEEEEecccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIR 275 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~er----gv~~~~~v~d~~~ 275 (544)
..+.+.+.+.+....+ .+|||||||+|.++..|++++ ++++|+++.++..+..+....+ ...+.+..++...
T Consensus 43 ~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp HHHHHHHHHHHHHTTC--CEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHhcccCC--CEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 4455666666665543 489999999999999999885 6777777766654443322111 1246777888888
Q ss_pred CC---CCCCCeeEEEec-cccccccc-----C-hHHHHHHHHHcccCCcEEEEEeC
Q 009069 276 LP---YPSRAFDMAHCS-RCLIPWGQ-----Y-DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LP---fpd~sFDlV~~~-~~l~h~~~-----d-~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++ +++++||+|+|. .+++|+.+ + ...+++++.|+|||||+|++..+
T Consensus 121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 87 889999999998 88877775 1 47899999999999999999875
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=124.28 Aligned_cols=97 Identities=23% Similarity=0.255 Sum_probs=79.9
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
.+.+|||+|||+|.++..+ .. .++++|+++.+ ++.+.++...+.+..+|...+|+++++||+|++..+++|+.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~-----~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAM-----LAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHH-----HHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHH-----HHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence 4458999999999999888 44 56777775544 44555544567888889999999999999999999997776
Q ss_pred cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++..++.++.|+|||||.++++.+
T Consensus 110 -~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 110 -DVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHcCCCCEEEEEec
Confidence 589999999999999999999976
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=125.13 Aligned_cols=101 Identities=14% Similarity=0.282 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
...+|||+|||+|.++..|+++ .++++|+++.++..+..... ...++.+..+|...++ ++++||+|+|+.+++|+
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 127 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTK--RWSHISWAATDILQFS-TAELFDLIVVAEVLYYL 127 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTT--TCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGS
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcc--cCCCeEEEEcchhhCC-CCCCccEEEEccHHHhC
Confidence 3458999999999999999987 46777776654433332211 1236788999998888 78899999999999887
Q ss_pred ccCh--HHHHHHHHHcccCCcEEEEEeC
Q 009069 296 GQYD--GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~~d~--~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+.. ..++.++.++|||||.|+++.+
T Consensus 128 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 128 EDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 7522 5789999999999999999875
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=123.95 Aligned_cols=104 Identities=25% Similarity=0.316 Sum_probs=79.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC------CeEEEEeccccCCCCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV------PALIGVMASIRLPYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv------~~~~~v~d~~~LPfpd~sFDlV~~~~ 290 (544)
+.+|||+|||+|.++..+++++ ++++|+++.++..++. .+...+. .+.+...|...+++++++||+|++..
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 109 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAET-AARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQA 109 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred CCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcc
Confidence 3489999999999999999874 5666665544432222 1112233 36788889999999999999999999
Q ss_pred cccccccChH---HHHHHHHHcccCCcEEEEEeCCCC
Q 009069 291 CLIPWGQYDG---LYLIEVDRVLRPGGYWILSGPPVN 324 (544)
Q Consensus 291 ~l~h~~~d~~---~~L~Ei~RVLKPGG~Lvis~pp~~ 324 (544)
+++|+.+ +. .+++++.|+|||||++++..+...
T Consensus 110 ~l~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 110 FLTSVPD-PKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp CGGGCCC-HHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred hhhcCCC-HHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 9988764 54 899999999999999999875433
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-12 Score=124.27 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=76.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc-ccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR-CLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~-~l~h~ 295 (544)
+.+|||+|||+|.++..|+++ .++++|+++. +++.+.++...+.+..+|...+++ +++||+|+|.. +++|+
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~-----~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~ 114 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFGDTAGLELSED-----MLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYL 114 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHSEEEEEESCHH-----HHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGC
T ss_pred CCeEEEecccCCHHHHHHHHhCCcEEEEeCCHH-----HHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhc
Confidence 458999999999999999886 4677777554 445555555567888889888887 78999999755 77666
Q ss_pred cc--ChHHHHHHHHHcccCCcEEEEEe
Q 009069 296 GQ--YDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 296 ~~--d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.. +...+|.++.++|||||.|++..
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 115 KTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 43 23789999999999999999985
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=129.69 Aligned_cols=117 Identities=13% Similarity=0.115 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecc
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMAS 273 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~ 273 (544)
......++.+.+.+.+.++ .+|||||||+|.++..++++ .++++|+++.++..+... +...++ .+.+..+|.
T Consensus 55 ~a~~~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~ 131 (302)
T 3hem_A 55 EAQYAKRKLALDKLNLEPG--MTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAM-FDEVDSPRRKEVRIQGW 131 (302)
T ss_dssp HHHHHHHHHHHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHH-HHHSCCSSCEEEEECCG
T ss_pred HHHHHHHHHHHHHcCCCCc--CEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HHhcCCCCceEEEECCH
Confidence 3344455566666655544 48999999999999999886 477788877666544433 333444 478888888
Q ss_pred ccCCCCCCCeeEEEecccccccccC-------h-HHHHHHHHHcccCCcEEEEEeC
Q 009069 274 IRLPYPSRAFDMAHCSRCLIPWGQY-------D-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 274 ~~LPfpd~sFDlV~~~~~l~h~~~d-------~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..+ +++||+|++..+++|+++. . ..++.++.|+|||||.|++...
T Consensus 132 ~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 132 EEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp GGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred HHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 766 7899999999999888542 1 6899999999999999999864
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=123.12 Aligned_cols=133 Identities=16% Similarity=0.157 Sum_probs=94.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 009069 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d 298 (544)
+.+|||||||+|.++..++++ +++|+++. +++.+.++ .+.+..+|...+++++++||+|++..+++|+. +
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~-----~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK--IGVEPSER-----MAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVD-D 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC--EEEESCHH-----HHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS-C
T ss_pred CCcEEEeCCCCCHHHHHHHHH--hccCCCHH-----HHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhcc-C
Confidence 448999999999999999887 77887654 44455555 46778888888999889999999999997775 5
Q ss_pred hHHHHHHHHHcccCCcEEEEEeCCCCcc--ccc----cCCCcchhhhHhhhhhHHHHHHhhcceeeeee
Q 009069 299 DGLYLIEVDRVLRPGGYWILSGPPVNWE--SHW----KGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 299 ~~~~L~Ei~RVLKPGG~Lvis~pp~~w~--~~~----~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~ 361 (544)
+..+|.++.++|||||.+++..+..... ... ..............+++..++++.+|+.+...
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987532210 000 00000000001123567788888999876643
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=121.94 Aligned_cols=143 Identities=15% Similarity=0.056 Sum_probs=96.0
Q ss_pred CCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC-eEEE
Q 009069 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP-ALIG 269 (544)
Q Consensus 194 g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~-~~~~ 269 (544)
+..|..+.....+.+.+.+......+.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+.. +.+.
T Consensus 36 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~ 114 (205)
T 3grz_A 36 GLAFGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENA-ALNGIYDIALQ 114 (205)
T ss_dssp C-----CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHTTCCCCEEE
T ss_pred CcccCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEE
Confidence 3334455555555555555422223458999999999999999886 4788888877665554433 334444 7788
Q ss_pred EeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHH
Q 009069 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETI 349 (544)
Q Consensus 270 v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~l 349 (544)
.+|... +.+++||+|+++..+++ ...++.++.++|||||+++++..... ..+.+..+
T Consensus 115 ~~d~~~--~~~~~fD~i~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------~~~~~~~~ 171 (205)
T 3grz_A 115 KTSLLA--DVDGKFDLIVANILAEI----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------QLPKIEQA 171 (205)
T ss_dssp ESSTTT--TCCSCEEEEEEESCHHH----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------GHHHHHHH
T ss_pred eccccc--cCCCCceEEEECCcHHH----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------cHHHHHHH
Confidence 777654 34689999999887644 36889999999999999999854111 13346667
Q ss_pred HHhhcceeeee
Q 009069 350 ARSLCWKKLIQ 360 (544)
Q Consensus 350 a~~l~w~~v~~ 360 (544)
++..+|+.+..
T Consensus 172 ~~~~Gf~~~~~ 182 (205)
T 3grz_A 172 LAENSFQIDLK 182 (205)
T ss_dssp HHHTTEEEEEE
T ss_pred HHHcCCceEEe
Confidence 78888877653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-12 Score=126.94 Aligned_cols=100 Identities=10% Similarity=0.125 Sum_probs=81.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+|||+|||+|.++..|+++ .++++|+++.++..++.. +...+.++.+..+|...+++ +++||+|+++.+++|+.
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~ 198 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNET-KEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLN 198 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSC
T ss_pred CCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHHcCCceEEEEeccccccc-cCCccEEEEccchhhCC
Confidence 348999999999999999987 467788877666544433 33455688999999988887 78999999999998876
Q ss_pred cCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 297 QYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 297 ~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
... ..++.++.++|||||.+++..
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 199 RERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 432 689999999999999988864
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=130.23 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh---C--CcEEEeCCccchHHHHHHHHHH--cCCCeEEEEeccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS---R--NILAVSFAPRDTHEAQVQFALE--RGVPALIGVMASI 274 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~---~--~V~~vdisp~dls~a~v~~A~e--rgv~~~~~v~d~~ 274 (544)
....+.|.++.. ..+.+|||||||+|.++..|++ . .++++|+++.++..+....... ...++.+.++|..
T Consensus 23 ~~~~~~l~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 23 SDFYKMIDEYHD---GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHHHCC---SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHHHhc---CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 334445555432 2345899999999999999994 3 5778888777665554433322 1457899999999
Q ss_pred cCCCCC------CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 275 RLPYPS------RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 275 ~LPfpd------~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+++++ ++||+|+|+.+++|+ +...++.++.|+|||||.|++..
T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp CCGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCccccccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEEe
Confidence 988887 899999999999777 68999999999999999999953
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-12 Score=121.42 Aligned_cols=119 Identities=19% Similarity=0.263 Sum_probs=91.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 009069 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d 298 (544)
..+|||||||+|.++..++ ..++++|+++. .+.+..+|...+++++++||+|++..++| + .+
T Consensus 68 ~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~-~~ 129 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-G-TN 129 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCCC-S-SC
T ss_pred CCeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhcc-c-cC
Confidence 3479999999999998885 68899999875 33566778888999999999999999995 4 56
Q ss_pred hHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeecc-----EEEEecc
Q 009069 299 DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD-----LAIWQKP 370 (544)
Q Consensus 299 ~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~-----~aIwqKP 370 (544)
...++.++.++|||||.+++....... . ..+.+..+++..+|+.+..... +.+++|.
T Consensus 130 ~~~~l~~~~~~L~~gG~l~i~~~~~~~--------~-------~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 130 IRDFLEEANRVLKPGGLLKVAEVSSRF--------E-------DVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECGGGC--------S-------CHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCeEEEEEEcCCCC--------C-------CHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEec
Confidence 799999999999999999998652110 0 2345667888889987764321 4555655
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-12 Score=120.08 Aligned_cols=123 Identities=14% Similarity=0.074 Sum_probs=88.8
Q ss_pred cccHHHHHHHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEec
Q 009069 198 PRGADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV-PALIGVMA 272 (544)
Q Consensus 198 ~~ga~~~i~~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d 272 (544)
....+...+.+.+.+... ...+.+|||+|||+|.++..++++ .++++|+++.++..++.+... .+. .+.+..+|
T Consensus 23 rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~v~~~~~d 101 (189)
T 3p9n_A 23 RPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEA-LGLSGATLRRGA 101 (189)
T ss_dssp ---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHH-HTCSCEEEEESC
T ss_pred ccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH-cCCCceEEEEcc
Confidence 344455556666666431 123458999999999999987775 478999988777655554433 343 68888888
Q ss_pred cccCC--CCCCCeeEEEecccccccccChHHHHHHHHH--cccCCcEEEEEeC
Q 009069 273 SIRLP--YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDR--VLRPGGYWILSGP 321 (544)
Q Consensus 273 ~~~LP--fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~R--VLKPGG~Lvis~p 321 (544)
...++ +++++||+|+++..+++..++...++.++.+ +|||||.|++..+
T Consensus 102 ~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 102 VAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp HHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred HHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 77654 4578999999998775543445889999999 9999999999865
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-12 Score=133.85 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=96.0
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc----C----CCeEEEEeccccC------CCC
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER----G----VPALIGVMASIRL------PYP 279 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~er----g----v~~~~~v~d~~~L------Pfp 279 (544)
+.+|||||||+|.++..|++. .++++|+++.++..+........ | .++.+.++|...+ +++
T Consensus 84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~ 163 (383)
T 4fsd_A 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP 163 (383)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred CCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence 458999999999999888764 57888887766654443332210 3 4788999998887 899
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhh-------HhhhhhHHHHHHh
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDL-------KSEQNGIETIARS 352 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L-------~~~~~~ie~la~~ 352 (544)
+++||+|+++.+++|+. +...+|.++.|+|||||+|+++.......... . ......+ ....+++..++++
T Consensus 164 ~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 164 DSSVDIVISNCVCNLST-NKLALFKEIHRVLRDGGELYFSDVYADRRLSE-A-AQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCH-H-HHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCEEEEEEccchhcCC-CHHHHHHHHHHHcCCCCEEEEEEeccccccCH-h-HhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 99999999999997765 58999999999999999999985421110000 0 0000000 0112567788889
Q ss_pred hcceeee
Q 009069 353 LCWKKLI 359 (544)
Q Consensus 353 l~w~~v~ 359 (544)
.+|+.+.
T Consensus 241 aGF~~v~ 247 (383)
T 4fsd_A 241 AGFRDVR 247 (383)
T ss_dssp TTCCCEE
T ss_pred CCCceEE
Confidence 9997664
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-12 Score=128.15 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=87.8
Q ss_pred HHHHHHHHHh-cccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 203 AYIDDIGKLI-NLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 203 ~~i~~L~~lL-~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
.+++.+.+.+ .+.. +.+|||||||+|.++..|++. .++++|+++.++..++.. +...+.++.+.++|...+
T Consensus 8 ~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~v~~~~~d~~~~ 84 (284)
T 3gu3_A 8 DYVSFLVNTVWKITK--PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL-FRLLPYDSEFLEGDATEI 84 (284)
T ss_dssp HHHHHHHHTTSCCCS--CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHH-HHSSSSEEEEEESCTTTC
T ss_pred HHHHHHHHHHhccCC--CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEEcchhhc
Confidence 3444455444 2333 458999999999999999875 477888877666544432 223344688899999998
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+++ ++||+|++..+++|+. +...++.++.|+|||||+|++..+.
T Consensus 85 ~~~-~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 85 ELN-DKYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CCS-SCEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CcC-CCeeEEEECChhhcCC-CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 884 6999999999997775 4789999999999999999999874
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-12 Score=129.73 Aligned_cols=114 Identities=12% Similarity=0.145 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L 276 (544)
...++.+.+.+...+ +.+|||||||+|.++..+++. .++++|+++.++..+.... .+.+. .+.+..+|...+
T Consensus 76 ~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~ 152 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKP--GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVL-ASIDTNRSRQVLLQGWEDF 152 (318)
T ss_dssp HHHHHHHHTTSCCCT--TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTSCCSSCEEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCC--cCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECChHHC
Confidence 344455555554444 348999999999999999876 4677777766554443322 23343 378888888777
Q ss_pred CCCCCCeeEEEeccccccccc-ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~-d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
| ++||+|++..+++|+.. +...++.++.|+|||||.+++..+
T Consensus 153 ~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 153 A---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp C---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred C---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 5 78999999999988863 458999999999999999999865
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=131.64 Aligned_cols=103 Identities=11% Similarity=-0.008 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCcHHHHH----HhhC--Cc----EEEeCCccchHHHHHHHHHHcCC-CeE--EEEeccccCC------C
Q 009069 218 SIRTAIDTGCGVASWGAY----LMSR--NI----LAVSFAPRDTHEAQVQFALERGV-PAL--IGVMASIRLP------Y 278 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~----La~~--~V----~~vdisp~dls~a~v~~A~ergv-~~~--~~v~d~~~LP------f 278 (544)
.+.+|||||||+|.++.. ++.+ ++ +++|+++.++..+..+.+...++ .+. +..++.+.++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 345899999999976543 3332 34 78888887776555444322233 233 3444444443 6
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++||+|+|..+++|+. ++..+|+++.|+|||||+|++...
T Consensus 132 ~~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp CCCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeeecC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 789999999999997665 589999999999999999999853
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-12 Score=120.51 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=80.4
Q ss_pred CCEEEEeCCCCcHH-HHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASW-GAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~-a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+.+|||+|||+|.+ ...+++. .++++|+++.++..+.... ...+..+.+..+|...+++++++||+|++..+++|+
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 102 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFS-RENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHM 102 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHH-HHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGS
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH-HhcCCceEEEECchhhCCCCCCceeEEEEcChHHhC
Confidence 34899999999987 4445544 5788888887775554433 334556788888999999989999999999999888
Q ss_pred c-cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 296 G-QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~-~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. .+...++.++.|+|||||.+++..+
T Consensus 103 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 103 RKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5 3348999999999999999999864
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-12 Score=135.10 Aligned_cols=122 Identities=14% Similarity=0.092 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP 277 (544)
+.+..++.+.+.+......+.+|||+|||+|.++..++++ .++++|+++.++..+..+ +...++.+.+...|....+
T Consensus 215 ~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n-~~~~~~~v~~~~~D~~~~~ 293 (381)
T 3dmg_A 215 ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKG-LEANALKAQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHH-HHHTTCCCEEEECSTTTTS
T ss_pred HHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEcchhhcc
Confidence 3344445554444212223458999999999999999987 477788877666544443 3345667888899988888
Q ss_pred CCCCCeeEEEeccccccc----ccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 278 YPSRAFDMAHCSRCLIPW----GQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~----~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
.++++||+|+++..+++. ......++.++.++|||||.|+++.++
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 777899999999888652 222368999999999999999999763
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.33 E-value=7e-12 Score=118.30 Aligned_cols=98 Identities=18% Similarity=0.135 Sum_probs=77.1
Q ss_pred EEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc-c
Q 009069 221 TAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG-Q 297 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~-~ 297 (544)
+|||||||+|.++..|++.+ ++++|+++.++..+.... ...+..+.+..+|...+++++++||+|+++. .|+. .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLA-QEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHH-HHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHH-HhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCHH
Confidence 79999999999999999874 667777666554444332 2335578888889988998889999999964 3453 2
Q ss_pred ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 298 YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 298 d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+...++.++.++|||||++++..+
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~ 132 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGF 132 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEe
Confidence 347899999999999999999875
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=7e-13 Score=134.03 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=76.0
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC------------------------------
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG------------------------------ 263 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg------------------------------ 263 (544)
.+.+|||||||+|.++..|+++ .++++|+++.++..+.........
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 4568999999999999999876 577888877666544432211000
Q ss_pred ----------------------------CCeEEEEeccccCC-----CCCCCeeEEEecccccccc----c-ChHHHHHH
Q 009069 264 ----------------------------VPALIGVMASIRLP-----YPSRAFDMAHCSRCLIPWG----Q-YDGLYLIE 305 (544)
Q Consensus 264 ----------------------------v~~~~~v~d~~~LP-----fpd~sFDlV~~~~~l~h~~----~-d~~~~L~E 305 (544)
..+.+..+|....+ +.+++||+|+|..+++|++ + +...+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 24777777765443 6788999999999985553 1 23789999
Q ss_pred HHHcccCCcEEEEEeC
Q 009069 306 VDRVLRPGGYWILSGP 321 (544)
Q Consensus 306 i~RVLKPGG~Lvis~p 321 (544)
+.++|||||+|++...
T Consensus 206 ~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHEEEEEEEEEECC
T ss_pred HHHHhCCCcEEEEecC
Confidence 9999999999999854
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=129.29 Aligned_cols=152 Identities=14% Similarity=0.031 Sum_probs=95.2
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHc-C------------------
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-G------------------ 263 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~er-g------------------ 263 (544)
+.+.+++......+.+|||||||+|.++..++.. .|+++|+++.++..++.....+. .
T Consensus 43 ~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~ 122 (263)
T 2a14_A 43 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG 122 (263)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGG
T ss_pred HHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCc
Confidence 4455555433334568999999999887766655 48889999888875543321110 0
Q ss_pred ----------CCeE-EEEecccc-CCC---CCCCeeEEEecccccccccC---hHHHHHHHHHcccCCcEEEEEeCC-CC
Q 009069 264 ----------VPAL-IGVMASIR-LPY---PSRAFDMAHCSRCLIPWGQY---DGLYLIEVDRVLRPGGYWILSGPP-VN 324 (544)
Q Consensus 264 ----------v~~~-~~v~d~~~-LPf---pd~sFDlV~~~~~l~h~~~d---~~~~L~Ei~RVLKPGG~Lvis~pp-~~ 324 (544)
..+. +.++|... .|+ ..++||+|+++.++||...+ ...++.++.|+|||||+|++++.. ..
T Consensus 123 ~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~ 202 (263)
T 2a14_A 123 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP 202 (263)
T ss_dssp GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred chhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCc
Confidence 0122 66777766 344 36799999999999876432 368999999999999999999631 11
Q ss_pred ccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 325 WESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 325 w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
+.. ... ..........+++..+.+..+|+.+..
T Consensus 203 ~~~-~g~--~~~~~~~~~~~~l~~~l~~aGF~i~~~ 235 (263)
T 2a14_A 203 SYM-VGK--REFSCVALEKGEVEQAVLDAGFDIEQL 235 (263)
T ss_dssp EEE-ETT--EEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cce-eCC--eEeeccccCHHHHHHHHHHCCCEEEEE
Confidence 100 000 000000112345677788888876553
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=131.07 Aligned_cols=102 Identities=6% Similarity=-0.046 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC-------eEEEEecc------ccC--CCCC
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP-------ALIGVMAS------IRL--PYPS 280 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~-------~~~~v~d~------~~L--Pfpd 280 (544)
+.+|||||||+|..+..++.. .|+++|+++.++..++.+.. +.+.. +.+.+.+. ..+ ++++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~-~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYN-KLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHH-hccccccccccccchhhhhcccchhhhhhhccccC
Confidence 458999999999765555544 48899998888876665433 33322 45666655 333 4677
Q ss_pred CCeeEEEeccccccccc--ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQ--YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~--d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|+|..++|+..+ +...+|+++.|+|||||+|+++.+
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 89999999999865422 347999999999999999999876
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-11 Score=112.46 Aligned_cols=130 Identities=13% Similarity=-0.040 Sum_probs=92.6
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~----V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
....+.+.+....+ .+|||+|||+|.++..+++.+ ++++|+++.++..++..........+.+..+|.......
T Consensus 28 i~~~~l~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 105 (204)
T 3e05_A 28 VRAVTLSKLRLQDD--LVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD 105 (204)
T ss_dssp HHHHHHHHTTCCTT--CEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT
T ss_pred HHHHHHHHcCCCCC--CEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc
Confidence 33445555555544 489999999999999998764 788888887776555444332223578888887554444
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcce
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~ 356 (544)
.++||+|++...++ +...++.++.++|||||.|++..... ...+.+....++.+|.
T Consensus 106 ~~~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 106 LPDPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp SCCCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------HHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------ccHHHHHHHHHHCCCc
Confidence 47899999988663 46899999999999999999986511 1233455677778883
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-12 Score=126.82 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc--C
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR--L 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~--L 276 (544)
..+.+.+.+.+.. .+.+|||||||+|..+.++++. .++++|+++.++..++ +.+...+..+.+..++.+. .
T Consensus 47 ~~~m~~~a~~~~~---~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~ 122 (236)
T 3orh_A 47 TPYMHALAAAASS---KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGLWEDVAP 122 (236)
T ss_dssp HHHHHHHHHHHTT---TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHHhhcc---CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEeehHHhhcc
Confidence 4455566665532 3458999999999999999886 4778888776554333 2333445567777777544 3
Q ss_pred CCCCCCeeEEEe-----cccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 277 PYPSRAFDMAHC-----SRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 277 Pfpd~sFDlV~~-----~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
++++++||.|+. ...++|..+ ...++.++.|+|||||.|++.
T Consensus 123 ~~~~~~FD~i~~D~~~~~~~~~~~~~-~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 123 TLPDGHFDGILYDTYPLSEETWHTHQ-FNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTTHH-HHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccCCceEEEeeeecccchhhhcc-hhhhhhhhhheeCCCCEEEEE
Confidence 578899999985 333434443 588999999999999999885
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=120.61 Aligned_cols=101 Identities=25% Similarity=0.282 Sum_probs=79.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+.+|||+|||+|.++..+++. .++++|+++.++..++.... ....+.+.++|...+++++++||+|++..+++++
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 120 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA--HVPQLRWETMDVRKLDFPSASFDVVLEKGTLDAL 120 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTT--TCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHH
T ss_pred CCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcc--cCCCcEEEEcchhcCCCCCCcccEEEECcchhhh
Confidence 347999999999999999886 47788887655543332221 1235788888998889989999999998888665
Q ss_pred c--------------cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 296 G--------------QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~--------------~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. .+...++.++.|+|||||.+++..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 4 1237899999999999999999976
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=118.42 Aligned_cols=139 Identities=16% Similarity=0.087 Sum_probs=91.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH----HcCC-CeEEEEeccccCCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~----ergv-~~~~~v~d~~~LPfpd~sFDlV~~~ 289 (544)
+.+|||||||+|.++..|+++ .++++|+++.++..... .+. ..+. ++.+.++|...+|+++++ |.|+..
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~-~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISA-KAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHH-HHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 348999999999999999886 48899999988864332 222 2333 688999999999998777 877743
Q ss_pred cccc----ccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchh-hhHhhhhhHHHHHHhhcceeee
Q 009069 290 RCLI----PWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTE-DLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 290 ~~l~----h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e-~L~~~~~~ie~la~~l~w~~v~ 359 (544)
.... |+..++..++.++.|+|||||.|+++.....|...........+ ......+.+..+.+..+|+...
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 3221 13334589999999999999999997543333221111000000 0111123477788888887654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-12 Score=122.81 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC-
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL- 276 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L- 276 (544)
...+++.+.+.+. . .+.+|||||||+|.++..|++. .++++|+++.++..+.. .+...+.++.+..+|...+
T Consensus 46 ~~~~~~~l~~~~~-~--~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~ 121 (236)
T 1zx0_A 46 ETPYMHALAAAAS-S--KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDVA 121 (236)
T ss_dssp GHHHHHHHHHHHT-T--TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHhhcC-C--CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcCCCeEEEecCHHHhh
Confidence 3445555555542 2 3448999999999999999875 46788887766644443 2223345678888888888
Q ss_pred -CCCCCCeeEEEe-ccccccccc----ChHHHHHHHHHcccCCcEEEEEe
Q 009069 277 -PYPSRAFDMAHC-SRCLIPWGQ----YDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 277 -Pfpd~sFDlV~~-~~~l~h~~~----d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
++++++||+|++ ...+ +... +...++.++.|+|||||+|++..
T Consensus 122 ~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 122 PTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 899999999999 5543 2221 11477999999999999999874
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.5e-12 Score=126.64 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=85.1
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHH-------cCCCeEEEEecc
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE-------RGVPALIGVMAS 273 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~e-------rgv~~~~~v~d~ 273 (544)
.++.+.+.+........+|||+|||+|.++..+++. .++++|+++.++..+....... ....+.+.++|.
T Consensus 20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~ 99 (313)
T 3bgv_A 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS 99 (313)
T ss_dssp HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT
T ss_pred HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc
Confidence 334444444333223458999999999999998865 5788899887776555544332 122578888898
Q ss_pred ccCC----CC--CCCeeEEEecccccccccC---hHHHHHHHHHcccCCcEEEEEeC
Q 009069 274 IRLP----YP--SRAFDMAHCSRCLIPWGQY---DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 274 ~~LP----fp--d~sFDlV~~~~~l~h~~~d---~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..++ ++ +++||+|+|+.++|+...+ ...+|.++.|+|||||+|+++.+
T Consensus 100 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 100 SKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 8876 54 4599999999998554233 26899999999999999999976
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-11 Score=135.75 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC-----cEEEeCCccchHHHHHHHHHH-----cC-CCeEE
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN-----ILAVSFAPRDTHEAQVQFALE-----RG-VPALI 268 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~-----V~~vdisp~dls~a~v~~A~e-----rg-v~~~~ 268 (544)
-....++.+.+.+....+ .+|||||||+|.++..|++++ |+++|+++.++..+..++... .+ ..+.+
T Consensus 705 L~eqRle~LLelL~~~~g--~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVef 782 (950)
T 3htx_A 705 LSKQRVEYALKHIRESSA--STLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATL 782 (950)
T ss_dssp HHHHHHHHHHHHHHHSCC--SEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEE
T ss_pred HHHHHHHHHHHHhcccCC--CEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEE
Confidence 334455566666654443 489999999999999999864 677888777666554433322 12 25889
Q ss_pred EEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeCCC
Q 009069 269 GVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 269 ~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
.++|...+++.+++||+|+|..+++|+.+.. ..++.++.|+|||| .++++.+..
T Consensus 783 iqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 783 YDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 9999999999999999999999998888633 46899999999999 888887643
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.1e-12 Score=126.23 Aligned_cols=115 Identities=12% Similarity=0.077 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEecccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIR 275 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~erg----v~~~~~v~d~~~ 275 (544)
....+.+.+.+.... .+|||||||+|.++..|+++ .++++|+++.++..+..+.. ..+ .++.+.++|...
T Consensus 69 ~~~~~~~~~~~~~~~---~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~v~~~~~d~~~ 144 (299)
T 3g2m_A 69 TSEAREFATRTGPVS---GPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLA-EAPADVRDRCTLVQGDMSA 144 (299)
T ss_dssp HHHHHHHHHHHCCCC---SCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHH-TSCHHHHTTEEEEECBTTB
T ss_pred cHHHHHHHHhhCCCC---CcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHh-hcccccccceEEEeCchhc
Confidence 334445555554332 27999999999999999987 57888887766654443322 233 468899999999
Q ss_pred CCCCCCCeeEEEecccccccccC--hHHHHHHHHHcccCCcEEEEEeC
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQY--DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d--~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++ +++||+|+|...+.|+.+. ...+|+++.|+|||||+|++..+
T Consensus 145 ~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 145 FAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp CCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 987 7899999976554455542 37899999999999999999865
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-11 Score=119.09 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+|||+|||+|.++..|++++ ++++|+++.++..+... +...+..+.+..+|...++++ ++||+|+|....+++.
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~ 119 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF 119 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcC
Confidence 4589999999999999999874 67788877766554433 334456788899999888865 6899999875443333
Q ss_pred c--ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 297 Q--YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 297 ~--d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. +...++.++.++|||||.|++..+
T Consensus 120 ~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 120 DEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 2 237899999999999999999765
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-11 Score=115.43 Aligned_cols=123 Identities=13% Similarity=0.059 Sum_probs=89.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--YPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP--fpd~sFDlV~~~~~ 291 (544)
+.+|||||||+|.++..+++. .++++|+++.++..+..... ..++ ++.+..+|...++ +++++||+|+++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL-EVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH-HHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHH-HcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 348999999999999999875 58888998877765554433 3343 6888888988877 77889999999865
Q ss_pred ccccccC--------hHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 292 LIPWGQY--------DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 292 l~h~~~d--------~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
. +|... ...++.++.++|||||.|++..... . ....+.+..+..+|+.+..
T Consensus 121 ~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------~---~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 121 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR--------------G---LFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH--------------H---HHHHHHHHHHHHTCEEEEE
T ss_pred C-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH--------------H---HHHHHHHHHHHCCCeeeec
Confidence 4 34321 1579999999999999999986410 1 1234455666667876544
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-11 Score=108.89 Aligned_cols=111 Identities=13% Similarity=0.032 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecc-c
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMAS-I 274 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~-~ 274 (544)
+.....+.+.+....+ .+|||+|||+|.++..+++. .++++|+++.++..++.. +.+.+.+ + +...|. .
T Consensus 11 ~~~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~-~~~~d~~~ 86 (178)
T 3hm2_A 11 QHVRALAISALAPKPH--ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSN-AINLGVSDRI-AVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHHHCCCTT--EEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHH-HHTTTCTTSE-EEECCTTG
T ss_pred HHHHHHHHHHhcccCC--CeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH-HHHhCCCCCE-EEecchHh
Confidence 3344455555554443 48999999999999999876 477788877666444432 2233443 5 555665 3
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.++..+++||+|++...+++ ..++.++.++|||||.+++...
T Consensus 87 ~~~~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 87 AFDDVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp GGGGCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred hhhccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence 34433389999999998855 5799999999999999999865
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.9e-12 Score=123.77 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=79.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCC-CCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPY-PSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPf-pd~sFDlV~~~~~l 292 (544)
+.+|||||||+|.++..+++. .++++|+++.++..+..... ..+. .+.+.++|...+++ ++++||+|++..++
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRAR-NMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHH-TSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 448999999999988888775 57888887766654443322 2332 47888889988888 68899999999998
Q ss_pred ccc---ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPW---GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~---~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|. ..+...+|.++.|+|||||.|++..+
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 663 22347899999999999999999976
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.2e-12 Score=121.87 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=96.0
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC------------------
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV------------------ 264 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv------------------ 264 (544)
+.+.+++......+.+|||||||+|.++..+++. .++++|+++.++..+..... ..+.
T Consensus 44 ~~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 122 (265)
T 2i62_A 44 KNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLK-KEPGAFDWSPVVTYVCDLEGNR 122 (265)
T ss_dssp HHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHT-TCTTCCCCHHHHHHHHHHTTTC
T ss_pred HHHHHHhcccccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHh-cCCccccchhhhhhhhcccccc
Confidence 3344554443334568999999999999888876 46778887766654433221 1110
Q ss_pred ------------Ce-EEEEeccccCC-CCC---CCeeEEEecccccccccC---hHHHHHHHHHcccCCcEEEEEeCCCC
Q 009069 265 ------------PA-LIGVMASIRLP-YPS---RAFDMAHCSRCLIPWGQY---DGLYLIEVDRVLRPGGYWILSGPPVN 324 (544)
Q Consensus 265 ------------~~-~~~v~d~~~LP-fpd---~sFDlV~~~~~l~h~~~d---~~~~L~Ei~RVLKPGG~Lvis~pp~~ 324 (544)
.+ .+..+|...++ +++ ++||+|+|..++++.... ...+|.++.|+|||||+|++......
T Consensus 123 ~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 202 (265)
T 2i62_A 123 MKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKS 202 (265)
T ss_dssp SCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred cchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCC
Confidence 15 77788877654 355 899999999999754433 47899999999999999999864211
Q ss_pred -ccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 325 -WESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 325 -w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
+... + ...........+.+..+++..+|+.+..
T Consensus 203 ~~~~~--~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 236 (265)
T 2i62_A 203 SYYMI--G-EQKFSSLPLGWETVRDAVEEAGYTIEQF 236 (265)
T ss_dssp CEEEE--T-TEEEECCCCCHHHHHHHHHHTTCEEEEE
T ss_pred ceEEc--C-CccccccccCHHHHHHHHHHCCCEEEEE
Confidence 1000 0 0000000111235777888889977654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-11 Score=116.95 Aligned_cols=112 Identities=14% Similarity=0.224 Sum_probs=83.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-ccCCCC-CCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMAS-IRLPYP-SRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~-~~LPfp-d~sFDlV~~~~~l~h 294 (544)
+.+|||||||+|.++..|++.+ ++++|++ +.+++.+.++...+.+.++|. ..+|++ +++||+|+++.
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s-----~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~---- 119 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAARWAAYDFS-----PELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR---- 119 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSSEEEEEESC-----HHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES----
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCEEEEEECC-----HHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC----
Confidence 3489999999999999999875 5555654 455556666666788889988 678888 89999999872
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
+...++.++.++|||||.|+..... .. ...+....+..+|+.+..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~~~~-----------~~-------~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYVGPR-----------LN-------VPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEEESS-----------SC-------CTHHHHHHHHTTCEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEeCCc-----------CC-------HHHHHHHHHHCCCeEEEE
Confidence 4578899999999999999933221 01 223556777788876653
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=117.95 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
..+.+.+.+.+. . +.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+..+.+..+|...++++
T Consensus 21 ~~~~~~~~~~~~--~--~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~- 94 (243)
T 3d2l_A 21 PEWVAWVLEQVE--P--GKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKA-METNRHVDFWVQDMRELELP- 94 (243)
T ss_dssp HHHHHHHHHHSC--T--TCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCGGGCCCS-
T ss_pred HHHHHHHHHHcC--C--CCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhh-hhcCCceEEEEcChhhcCCC-
Confidence 344455555543 2 248999999999999999876 6778888877665554433 33445788888998888876
Q ss_pred CCeeEEEecc-ccccccc--ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSR-CLIPWGQ--YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~-~l~h~~~--d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|++.. +++|+.. +...+++++.++|||||.+++..+
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 8899999986 8877743 237899999999999999999754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=123.52 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=76.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCC---
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY--- 278 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPf--- 278 (544)
.++.+.+.+.+..+. +|||||||+|.++..|++++ |+++|+++.++ +.++++.... +...+...++.
T Consensus 33 ~~~~il~~l~l~~g~--~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml-----~~Ar~~~~~~-~v~~~~~~~~~~~~ 104 (261)
T 3iv6_A 33 DRENDIFLENIVPGS--TVAVIGASTRFLIEKALERGASVTVFDFSQRMC-----DDLAEALADR-CVTIDLLDITAEIP 104 (261)
T ss_dssp HHHHHHHTTTCCTTC--EEEEECTTCHHHHHHHHHTTCEEEEEESCHHHH-----HHHHHHTSSS-CCEEEECCTTSCCC
T ss_pred HHHHHHHhcCCCCcC--EEEEEeCcchHHHHHHHhcCCEEEEEECCHHHH-----HHHHHHHHhc-cceeeeeecccccc
Confidence 445566666555544 89999999999999999885 66666655544 4444432111 22233333332
Q ss_pred --CCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 279 --PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 --pd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+++||+|+++.+++|+..+. ..++.++.++| |||.++++..
T Consensus 105 ~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 105 KELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp GGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 257899999999998886533 67999999999 9999999965
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=116.64 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--YPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP--fpd~sFDlV~~~~~ 291 (544)
..+|||||||+|.++..|++. .++++|+++.++..+..+. .+.+. ++.+..+|+..++ +++++||.|++...
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~-~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKV-KDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHH-HHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHH-HHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 348999999999999999875 4788888887775554433 33444 5888888888776 77889999998654
Q ss_pred ccccccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. +|... ...++.++.++|||||.|++...
T Consensus 118 ~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 118 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred C-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 44321 25799999999999999999864
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-11 Score=118.92 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCcc------chHHHHHHHHHHcCC--CeEE
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPR------DTHEAQVQFALERGV--PALI 268 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~------dls~a~v~~A~ergv--~~~~ 268 (544)
......+.+.+.+..+ .+|||||||+|.++..++++ .++++|+++. ++..++... ...+. .+.+
T Consensus 29 ~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~-~~~~~~~~v~~ 105 (275)
T 3bkx_A 29 TAHRLAIAEAWQVKPG--EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL-LAGPLGDRLTV 105 (275)
T ss_dssp HHHHHHHHHHHTCCTT--CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHH-HTSTTGGGEEE
T ss_pred HHHHHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHH-HhcCCCCceEE
Confidence 3344455555555544 48999999999999998875 4788888876 565444333 33333 4778
Q ss_pred EEec---cccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 269 GVMA---SIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 269 ~v~d---~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..+| ...+|+++++||+|++..+++|+.+ +..++..+.++++|||++++...
T Consensus 106 ~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 106 HFNTNLSDDLGPIADQHFDRVVLAHSLWYFAS-ANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp ECSCCTTTCCGGGTTCCCSEEEEESCGGGSSC-HHHHHHHHHHHTTTCSEEEEEEE
T ss_pred EECChhhhccCCCCCCCEEEEEEccchhhCCC-HHHHHHHHHHHhCCCCEEEEEEe
Confidence 8777 5667788899999999999987765 66677777777777999999864
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=9.8e-12 Score=124.61 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=93.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh---CCcEEEeCCccchHHHHHHHH----------------HHcCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS---RNILAVSFAPRDTHEAQVQFA----------------LERGV 264 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~---~~V~~vdisp~dls~a~v~~A----------------~ergv 264 (544)
.++.+.+.+......+.+|||||||+|.+...++. ..|+++|+++.++..+..... ...+.
T Consensus 57 ~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (289)
T 2g72_A 57 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK 136 (289)
T ss_dssp HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCc
Confidence 34556666543323455899999999995444433 258888888877754443211 00110
Q ss_pred --------------CeEEEEecccc-CCC-----CCCCeeEEEecccccccccC---hHHHHHHHHHcccCCcEEEEEeC
Q 009069 265 --------------PALIGVMASIR-LPY-----PSRAFDMAHCSRCLIPWGQY---DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 265 --------------~~~~~v~d~~~-LPf-----pd~sFDlV~~~~~l~h~~~d---~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+..+|+.. +|+ ++++||+|+|+.++++...+ ...+|.++.|+|||||+|++...
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~ 216 (289)
T 2g72_A 137 GECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289)
T ss_dssp CCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 13455667766 664 35679999999999775433 58999999999999999999752
Q ss_pred -CCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 322 -PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 322 -p~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
...|..... ..........+++..+++..+|+.+..
T Consensus 217 ~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~aGf~~~~~ 253 (289)
T 2g72_A 217 LEESWYLAGE---ARLTVVPVSEEEVREALVRSGYKVRDL 253 (289)
T ss_dssp ESCCEEEETT---EEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cCcceEEcCC---eeeeeccCCHHHHHHHHHHcCCeEEEe
Confidence 111110000 000000112345777888889976653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-11 Score=114.43 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYP 279 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfp 279 (544)
.....+.+.+....+. +|||+|||+|.++..|++. .++++|+++..+..+...+. ..+. ++.+..+|....+..
T Consensus 64 ~~~~~~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~ 140 (210)
T 3lbf_A 64 YMVARMTELLELTPQS--RVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLK-NLDLHNVSTRHGDGWQGWQA 140 (210)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHHHhcCCCCCC--EEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCceEEEECCcccCCcc
Confidence 3455666666655444 8999999999999999886 57788887766655544333 3333 578888888777767
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+++||+|++..+++++.+ ++.++|||||+|++..+.
T Consensus 141 ~~~~D~i~~~~~~~~~~~-------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 RAPFDAIIVTAAPPEIPT-------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCEEEEEESSBCSSCCT-------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEEccchhhhhH-------HHHHhcccCcEEEEEEcC
Confidence 789999999998877664 589999999999999764
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-11 Score=118.63 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=87.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+|||+|||+|.++..+++. .++++|+++.++..+..+ +..+++.+.+..++.... +++++||+|+++...++
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n-~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~-- 196 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEAN-AKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAEL-- 196 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHH-HHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHHH--
T ss_pred CCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHH-HHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHHH--
Confidence 448999999999999998887 478899999887655543 334555567777665542 45678999999765432
Q ss_pred cChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeee
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~ 359 (544)
...++.++.++|||||++++++... ...+.+...+++.+|+.+.
T Consensus 197 --~~~~l~~~~~~LkpgG~lils~~~~-----------------~~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 197 --HAALAPRYREALVPGGRALLTGILK-----------------DRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEEEG-----------------GGHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHHHcCCCCEEEEEeecc-----------------CCHHHHHHHHHHCCCEEEE
Confidence 3689999999999999999986411 1134566777888887654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-10 Score=110.49 Aligned_cols=107 Identities=9% Similarity=-0.068 Sum_probs=78.8
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSR 281 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~ 281 (544)
..+.+.+....+ .+|||+|||+|.++..++++ .++++|+++.++..+... +...++ .+.+..+|.........
T Consensus 45 ~~~l~~l~~~~~--~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~-~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 45 ALTLAALAPRRG--ELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKN-IDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHHCCCTT--CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHHhcCCCCC--CEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHcCCCCCEEEEeCchhhhcccCC
Confidence 345555555544 48999999999999999887 477788877666544433 334454 48888888777333345
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.||+|++...+ +.. ++.++.++|||||.|+++..
T Consensus 122 ~~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 122 LPEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp CCSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred CCCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 79999987744 346 99999999999999999865
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-11 Score=116.81 Aligned_cols=122 Identities=19% Similarity=0.138 Sum_probs=85.6
Q ss_pred CCcccHHHHHHHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEE
Q 009069 196 MFPRGADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIG 269 (544)
Q Consensus 196 ~F~~ga~~~i~~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~ 269 (544)
.|..+.+.. .+..++... .+ .+|||+|||+|.++..++++ .++++|+++.++..++.... ..+. .+.+.
T Consensus 30 ~~~~~~d~~--ll~~~~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~-~~~~~~~v~~~ 104 (259)
T 3lpm_A 30 VFSFSIDAV--LLAKFSYLPIRK--GKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVA-YNQLEDQIEII 104 (259)
T ss_dssp TBCCCHHHH--HHHHHCCCCSSC--CEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHH-HTTCTTTEEEE
T ss_pred CccCcHHHH--HHHHHhcCCCCC--CEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH-HCCCcccEEEE
Confidence 344555544 355555444 33 48999999999999999886 47888887766655544433 3344 37888
Q ss_pred EeccccCC--CCCCCeeEEEeccccccc----c---------------cChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 270 VMASIRLP--YPSRAFDMAHCSRCLIPW----G---------------QYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 270 v~d~~~LP--fpd~sFDlV~~~~~l~h~----~---------------~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
.+|...++ +++++||+|+++..+++. . .+...++.++.++|||||.|++..++
T Consensus 105 ~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 105 EYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp CSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred ECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 88887765 567899999998655332 0 11256999999999999999998653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.6e-11 Score=120.53 Aligned_cols=146 Identities=13% Similarity=0.063 Sum_probs=95.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEE-EeccccCC--
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIG-VMASIRLP-- 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~-v~d~~~LP-- 277 (544)
.+..+.+.+.+. ..+.+|||||||||.++..|+++ .|+++|+++.|+..+ .+....+... ..++..++
T Consensus 72 Kl~~~l~~~~~~-~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a-----~r~~~rv~~~~~~ni~~l~~~ 145 (291)
T 3hp7_A 72 KLEKALAVFNLS-VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWK-----LRQDDRVRSMEQYNFRYAEPV 145 (291)
T ss_dssp HHHHHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHH-----HHTCTTEEEECSCCGGGCCGG
T ss_pred HHHHHHHhcCCC-ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHhCcccceecccCceecchh
Confidence 344444554433 23458999999999999999886 488999999888542 2222233222 22333333
Q ss_pred -CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccc----cCCCcchhhhHhhhhhHHHHHHh
Q 009069 278 -YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHW----KGWNRTTEDLKSEQNGIETIARS 352 (544)
Q Consensus 278 -fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~----~~w~~t~e~L~~~~~~ie~la~~ 352 (544)
++..+||+|+|..++++ ...+|.++.|+|||||.|++...|..-..+. .+..+.....+...+++...+..
T Consensus 146 ~l~~~~fD~v~~d~sf~s----l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~ 221 (291)
T 3hp7_A 146 DFTEGLPSFASIDVSFIS----LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVD 221 (291)
T ss_dssp GCTTCCCSEEEECCSSSC----GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCEEEEEeeHhh----HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 34456999999887754 3689999999999999999975432211111 23334455555566778888889
Q ss_pred hcceeee
Q 009069 353 LCWKKLI 359 (544)
Q Consensus 353 l~w~~v~ 359 (544)
.+|....
T Consensus 222 ~Gf~v~~ 228 (291)
T 3hp7_A 222 YGFSVKG 228 (291)
T ss_dssp TTEEEEE
T ss_pred CCCEEEE
Confidence 9997554
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-10 Score=105.65 Aligned_cols=139 Identities=12% Similarity=0.037 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP 277 (544)
.....+.+.+.+....+ .+|||+|||+|.++..+++. .++++|+++.++..+..... ..+. .+.+...|... +
T Consensus 20 ~~~~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~d~~~-~ 95 (183)
T 2yxd_A 20 KEEIRAVSIGKLNLNKD--DVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLA-KFNIKNCQIIKGRAED-V 95 (183)
T ss_dssp CHHHHHHHHHHHCCCTT--CEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHH-HTTCCSEEEEESCHHH-H
T ss_pred HHHHHHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCcEEEEECCccc-c
Confidence 34555666666655444 48999999999999999875 57888887766654444333 3343 57888888766 6
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhccee
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 357 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~ 357 (544)
+++++||+|++..+ .+...++.++.++ |||.|++..+. .+. ..++.+..+..+|+.
T Consensus 96 ~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~-------------~~~----~~~~~~~l~~~g~~~ 151 (183)
T 2yxd_A 96 LDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIV-------------LEN----AAKIINEFESRGYNV 151 (183)
T ss_dssp GGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESC-------------HHH----HHHHHHHHHHTTCEE
T ss_pred ccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEecc-------------ccc----HHHHHHHHHHcCCeE
Confidence 67789999999886 4568899999999 99999999751 111 233556677777765
Q ss_pred eeeeccEEEE
Q 009069 358 LIQKKDLAIW 367 (544)
Q Consensus 358 v~~~~~~aIw 367 (544)
...+....-+
T Consensus 152 ~~~~~~~~~~ 161 (183)
T 2yxd_A 152 DAVNVFISYA 161 (183)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEeeeehh
Confidence 5544333333
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-10 Score=111.24 Aligned_cols=124 Identities=15% Similarity=-0.018 Sum_probs=87.2
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||+||| +|.++..+++. .++++|+++.++..+... +...+.++.+..+|... .++++++||+|+++..++
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~ 134 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRN-IERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYY 134 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHH-HHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred CCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-HHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence 4589999999 99999998876 578888888776555443 33455578888888643 356678999999987664
Q ss_pred ccccC------------------hHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcc
Q 009069 294 PWGQY------------------DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 355 (544)
Q Consensus 294 h~~~d------------------~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w 355 (544)
+.... ...++.++.++|||||.|++..+.. . .....+....++.+|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------~----~~~~~~~~~l~~~g~ 198 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK------------E----KLLNVIKERGIKLGY 198 (230)
T ss_dssp ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC------------H----HHHHHHHHHHHHTTC
T ss_pred CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc------------H----hHHHHHHHHHHHcCC
Confidence 43220 1678999999999999999975411 1 123346667777888
Q ss_pred eeee
Q 009069 356 KKLI 359 (544)
Q Consensus 356 ~~v~ 359 (544)
+...
T Consensus 199 ~~~~ 202 (230)
T 3evz_A 199 SVKD 202 (230)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 5543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.7e-11 Score=121.38 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=102.6
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP-YP 279 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP-fp 279 (544)
.+.+.+.... ...+|||||||+|.++..++++ .++++|+ +..+..+... ..+.+. .+.+..+|....+ +.
T Consensus 169 ~~l~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 169 DVVSELGVFA-RARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKT-IHAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHTCGGGT-TCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHH-HHHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHhCCCcC-CCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHH-HHhcCCCCceEEEeCCcccCcccC
Confidence 3444444333 1458999999999999999875 4677788 6555444433 333343 4788888877765 23
Q ss_pred CCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcc----------hhhhHhhhhhHHH
Q 009069 280 SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRT----------TEDLKSEQNGIET 348 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t----------~e~L~~~~~~ie~ 348 (544)
++.||+|++..++|+|.+.. ..+|+++.++|||||+|++......-... ..+... ........++++.
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 324 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRV-TPALSADFSLHMMVNTNHGELHPTPWIAG 324 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSS-SSHHHHHHHHHHHHHSTTCCCCCHHHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC-CCchHHHhhHHHHhhCCCCCcCCHHHHHH
Confidence 45699999999999887632 78999999999999999997631110000 000000 0000112355778
Q ss_pred HHHhhcceeeeeecc---EEEEeccC
Q 009069 349 IARSLCWKKLIQKKD---LAIWQKPT 371 (544)
Q Consensus 349 la~~l~w~~v~~~~~---~aIwqKP~ 371 (544)
++++.||+.+..... +.+-+||.
T Consensus 325 ll~~aGf~~~~~~~g~~~l~~a~kp~ 350 (352)
T 3mcz_A 325 VVRDAGLAVGERSIGRYTLLIGQRSS 350 (352)
T ss_dssp HHHHTTCEEEEEEETTEEEEEEECCC
T ss_pred HHHHCCCceeeeccCceEEEEEecCC
Confidence 899999988763221 45556663
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-11 Score=118.84 Aligned_cols=101 Identities=14% Similarity=0.218 Sum_probs=78.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccC-C--CCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL-P--YPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~L-P--fpd~sFDlV~~~~ 290 (544)
..+|||||||+|.++..|++. .++++|+++.++..+..+ +.+.++ ++.+..+|+..+ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~-~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLAS-AHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHH-HHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 448999999999999999875 388899988777655543 334444 688888887663 3 7889999999875
Q ss_pred cccccccCh--------HHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. +|+... ..++.++.|+|||||.|+++..
T Consensus 114 ~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 44 555432 2599999999999999999865
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=113.95 Aligned_cols=120 Identities=8% Similarity=-0.009 Sum_probs=86.3
Q ss_pred CCEEEEeCCCCcHHHHHHhh--C--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC---CCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMS--R--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYP---SRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~--~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfp---d~sFDlV~~~~ 290 (544)
+.+|||||||+|.++..|+. . .++++|+++.++..+.... ...+. ++.+..+|...+++. +++||+|+|..
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLS-EALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 44899999999999888874 2 5788898887775554433 33344 588888888888764 67999999966
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeee
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~ 359 (544)
. .+...++.++.++|||||.|++...+. ..++ ...+....+..+++...
T Consensus 150 ~-----~~~~~~l~~~~~~LkpgG~l~~~~g~~-----------~~~~----~~~~~~~l~~~g~~~~~ 198 (240)
T 1xdz_A 150 V-----ARLSVLSELCLPLVKKNGLFVALKAAS-----------AEEE----LNAGKKAITTLGGELEN 198 (240)
T ss_dssp C-----SCHHHHHHHHGGGEEEEEEEEEEECC------------CHHH----HHHHHHHHHHTTEEEEE
T ss_pred c-----CCHHHHHHHHHHhcCCCCEEEEEeCCC-----------chHH----HHHHHHHHHHcCCeEeE
Confidence 2 346899999999999999999874311 1122 23455567777876554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.7e-11 Score=111.25 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=77.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP-YPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP-fpd~sFDlV~~~~ 290 (544)
+.+|||+|||+|.++..++++ .++++|+++.++..+.... ...+. ++.+..+|...++ +.+++||+|++..
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKL-TDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHH-HHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 348999999999999998875 5788898887775555433 33444 5788888887776 6678999999987
Q ss_pred cccccc-----c---ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWG-----Q---YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~-----~---d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+.+.. . +...++.++.++|||||++++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 552211 1 125799999999999999999864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.5e-11 Score=114.81 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEec
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----LPYPSRAFDMAHCS 289 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~----LPfpd~sFDlV~~~ 289 (544)
.+.+|||+|||+|.++..|++. .|+++|+++.++. .+.+.+..+ .++.+..+|... .++. ++||+|++.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~-~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFE-KLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHH-HHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHH-HHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 3458999999999999988774 4889999887653 344555544 356677777655 3444 789999997
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
. .. +.+...++.++.|+|||||.|+++.
T Consensus 134 ~-~~--~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 134 I-AQ--KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp C-CS--TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-cC--hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3 21 2222456999999999999999985
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.1e-11 Score=109.78 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=82.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC-cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~-V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
+.+|||+|||+|.++..|++++ ++++|+++.++ +. ...+.+.++|... ++++++||+|+++..+++..+
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~-----~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~ 93 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRAL-----ES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTD 93 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHH-----HT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCC
T ss_pred CCeEEEeccCccHHHHHHHhcCcEEEEECCHHHH-----hc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCc
Confidence 3489999999999999999884 56666655443 33 3356777888766 677789999999988865443
Q ss_pred C--------hHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 298 Y--------DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 298 d--------~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
. ...++.++.+.| |||.+++..+... ..+++..+.+..+|+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~-----------------~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN-----------------RPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG-----------------CHHHHHHHHHHTTCEEEEE
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC-----------------CHHHHHHHHHHCCCcEEEE
Confidence 2 257889999999 9999999864111 1234666778888876653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=118.38 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=83.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP 277 (544)
....+.+.++.......+|||+|||+|.++..++++ .++++|++ ..+..+..... ..+. .+.+..+|....+
T Consensus 151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~ 228 (335)
T 2r3s_A 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR-IQGVASRYHTIAGSAFEVD 228 (335)
T ss_dssp HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHH-HHTCGGGEEEEESCTTTSC
T ss_pred hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHH-hcCCCcceEEEecccccCC
Confidence 334555555441023458999999999999999876 46777775 45544433332 2233 4788888888777
Q ss_pred CCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++ ||+|++..++|++.+.. ..+|+++.++|||||++++..+
T Consensus 229 ~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 229 YGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp CCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 7655 99999999998886533 7899999999999999999865
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=126.95 Aligned_cols=149 Identities=11% Similarity=0.102 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEe
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV----PALIGVM 271 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv----~~~~~v~ 271 (544)
+.+.-.+.+.+.+....+ .+|||+|||+|.++..++++ .++++|+++.++..+..... ..++ .+.+...
T Consensus 206 ~~d~~~~~ll~~l~~~~~--~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~-~ngl~~~~~v~~~~~ 282 (375)
T 4dcm_A 206 GLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMIN 282 (375)
T ss_dssp SCCHHHHHHHHTCCCSCC--SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HHCGGGGGGEEEEEC
T ss_pred cccHHHHHHHHhCcccCC--CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHH-HcCCCcCceEEEEec
Confidence 344444455666654443 48999999999999999876 47888888877765554433 3332 4677877
Q ss_pred ccccCCCCCCCeeEEEecccccccc---cCh-HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHH
Q 009069 272 ASIRLPYPSRAFDMAHCSRCLIPWG---QYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIE 347 (544)
Q Consensus 272 d~~~LPfpd~sFDlV~~~~~l~h~~---~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie 347 (544)
|... ++++++||+|+|+..+|+.. ... ..++.++.++|||||.|+++.+... .. ...++
T Consensus 283 D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~---------~~-------~~~l~ 345 (375)
T 4dcm_A 283 NALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL---------DY-------FHKLK 345 (375)
T ss_dssp STTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS---------CH-------HHHHH
T ss_pred hhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc---------CH-------HHHHH
Confidence 7765 56788999999999886422 211 4689999999999999999865211 00 11233
Q ss_pred HHHHhhcceeeeeeccEEEEecc
Q 009069 348 TIARSLCWKKLIQKKDLAIWQKP 370 (544)
Q Consensus 348 ~la~~l~w~~v~~~~~~aIwqKP 370 (544)
.... ..+.+.+...+.|++..
T Consensus 346 ~~fg--~~~~~a~~~~F~V~~~~ 366 (375)
T 4dcm_A 346 KIFG--NCTTIATNNKFVVLKAV 366 (375)
T ss_dssp HHHS--CCEEEEECSSEEEEEEE
T ss_pred HhcC--CEEEEeeCCCEEEEEEc
Confidence 2322 35667777777777654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-11 Score=118.23 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=75.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc--CCCeEEEEeccccCCCCC-----CCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER--GVPALIGVMASIRLPYPS-----RAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~er--gv~~~~~v~d~~~LPfpd-----~sFDlV~~~ 289 (544)
+.+|||||||+|.++..|++. .++++|+++.++. .++++ ..++.+.++|...+++.. ..||+|++.
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~-----~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALE-----IAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHH-----HHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHH-----HHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 447999999999999999887 5778888665554 33333 236788888887765432 349999999
Q ss_pred ccccccccC-hHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQY-DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+++|+..+ ...++.++.++|||||+|++...
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999777642 48999999999999999888864
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-10 Score=104.84 Aligned_cols=112 Identities=18% Similarity=0.171 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP 277 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP 277 (544)
......+.+.+....+ .+|||+|||+|.++..+++. .++++|+++..+..+..... ..+. .+.+...|... +
T Consensus 19 ~~~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~-~ 94 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKN--DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQ-RHGLGDNVTLMEGDAPE-A 94 (192)
T ss_dssp HHHHHHHHHHHCCCTT--CEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH-HTTCCTTEEEEESCHHH-H
T ss_pred HHHHHHHHHhcCCCCC--CEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHH-HcCCCcceEEEecCHHH-h
Confidence 4444555666655444 48999999999999999886 57888887766654443332 3343 57777777655 3
Q ss_pred CCC-CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPS-RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd-~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++ ++||+|++...+++ ...++.++.++|+|||.+++..+
T Consensus 95 ~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 95 LCKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp HTTSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccCCCCCEEEECCchHH----HHHHHHHHHHhcCCCcEEEEEec
Confidence 333 58999999876633 47899999999999999999865
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-11 Score=110.53 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=83.9
Q ss_pred cccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc
Q 009069 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR 275 (544)
Q Consensus 198 ~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~ 275 (544)
....+...+.+.+.+......+.+|||+|||+|.++..+++++ ++++|+++.++..+..+.. ..+.++.+...|...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~ 99 (171)
T 1ws6_A 21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVR-RTGLGARVVALPVEV 99 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHH-HHTCCCEEECSCHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH-HcCCceEEEeccHHH
Confidence 3445556666666665321123489999999999999998864 6788887766655554433 334467888877655
Q ss_pred -CCC---CCCCeeEEEecccccccccChHHHHHHHH--HcccCCcEEEEEeCC
Q 009069 276 -LPY---PSRAFDMAHCSRCLIPWGQYDGLYLIEVD--RVLRPGGYWILSGPP 322 (544)
Q Consensus 276 -LPf---pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~--RVLKPGG~Lvis~pp 322 (544)
++. .+++||+|++...++ .....++..+. ++|||||.++++.++
T Consensus 100 ~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 100 FLPEAKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp HHHHHHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred HHHhhhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 221 134899999988764 33456777777 999999999998764
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-11 Score=114.47 Aligned_cols=118 Identities=11% Similarity=0.088 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEec
Q 009069 200 GADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMA 272 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d 272 (544)
..+...+.+.+.+... .+ .+|||+|||+|.++..++.+ .|+++|+++.++..++.+.. ..++ .+.+..+|
T Consensus 36 ~~~~~~~~l~~~l~~~~~~--~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~v~~~~~d 112 (201)
T 2ift_A 36 TGDRVKETLFNWLMPYIHQ--SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQ-TLKCSSEQAEVINQS 112 (201)
T ss_dssp --CHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHH-HTTCCTTTEEEECSC
T ss_pred CHHHHHHHHHHHHHHhcCC--CeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHH-HhCCCccceEEEECC
Confidence 3444555555555432 33 48999999999999987665 47888888877765554433 3454 67888888
Q ss_pred cccCCC--CCCC-eeEEEecccccccccChHHHHHHH--HHcccCCcEEEEEeCC
Q 009069 273 SIRLPY--PSRA-FDMAHCSRCLIPWGQYDGLYLIEV--DRVLRPGGYWILSGPP 322 (544)
Q Consensus 273 ~~~LPf--pd~s-FDlV~~~~~l~h~~~d~~~~L~Ei--~RVLKPGG~Lvis~pp 322 (544)
...+.. ++++ ||+|++...+ + ..+...++.++ .|+|||||.|+++..+
T Consensus 113 ~~~~~~~~~~~~~fD~I~~~~~~-~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 113 SLDFLKQPQNQPHFDVVFLDPPF-H-FNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp HHHHTTSCCSSCCEEEEEECCCS-S-SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred HHHHHHhhccCCCCCEEEECCCC-C-CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 766432 3678 9999998875 3 23347788888 7789999999998753
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.8e-11 Score=119.47 Aligned_cols=104 Identities=12% Similarity=0.026 Sum_probs=77.3
Q ss_pred HHhcccCCCCCEEEEeCCCCcHHHHHH-hhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 009069 210 KLINLKDGSIRTAIDTGCGVASWGAYL-MSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~L-a~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDl 285 (544)
+++.+.++. +|||||||+|.+++.+ ++. .|+++|+++.++..++...+.....++.+..+|+..++ +++||+
T Consensus 116 ~la~l~~g~--rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDv 191 (298)
T 3fpf_A 116 ALGRFRRGE--RAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDV 191 (298)
T ss_dssp HHTTCCTTC--EEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSE
T ss_pred HHcCCCCcC--EEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCE
Confidence 445555544 9999999999766443 432 58888888877766655444322236888899988875 789999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|++... ..+...+++++.|+|||||.|++...
T Consensus 192 V~~~a~----~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 192 LMVAAL----AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEECTT----CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEECCC----ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 998553 34568999999999999999999864
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-11 Score=118.62 Aligned_cols=91 Identities=22% Similarity=0.371 Sum_probs=73.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
+.+|||||||+|.++..+++. + ++++|++ +.+++.+.+++..+.+...|...+|+++++||+|++..+.
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s-----~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-- 158 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVS-----KVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-- 158 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESC-----HHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC--
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCC-----HHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh--
Confidence 458999999999999999886 4 5556654 4555666666667788889999999999999999986642
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
.++.++.|+|||||.|++..+.
T Consensus 159 ------~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 159 ------CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp ------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred ------hhHHHHHHhcCCCcEEEEEEcC
Confidence 3589999999999999999763
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.2e-10 Score=112.32 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~ 275 (544)
.+..++.+.+.+. . ...+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+. ++.+..+|...
T Consensus 95 te~l~~~~l~~~~-~--~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~-~~~~~~v~~~~~d~~~ 170 (276)
T 2b3t_A 95 TECLVEQALARLP-E--QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ-HLAIKNIHILQSDWFS 170 (276)
T ss_dssp HHHHHHHHHHHSC-S--SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH-HHTCCSEEEECCSTTG
T ss_pred HHHHHHHHHHhcc-c--CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEEcchhh
Confidence 4555566666654 2 2348999999999999999853 57888888877655554333 3344 47888877655
Q ss_pred CCCCCCCeeEEEeccccccc-------------c-----------cChHHHHHHHHHcccCCcEEEEEeCCCCccccccC
Q 009069 276 LPYPSRAFDMAHCSRCLIPW-------------G-----------QYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKG 331 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~-------------~-----------~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~ 331 (544)
++++++||+|+++..++.. + .....++.++.++|||||++++..+..
T Consensus 171 -~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------- 241 (276)
T 2b3t_A 171 -ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-------- 241 (276)
T ss_dssp -GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS--------
T ss_pred -hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch--------
Confidence 3446789999998544322 1 112578899999999999999985421
Q ss_pred CCcchhhhHhhhhhHHHHHHhhcceeee
Q 009069 332 WNRTTEDLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 332 w~~t~e~L~~~~~~ie~la~~l~w~~v~ 359 (544)
. .+.+..+.+..+|+.+.
T Consensus 242 ---~-------~~~~~~~l~~~Gf~~v~ 259 (276)
T 2b3t_A 242 ---Q-------GEAVRQAFILAGYHDVE 259 (276)
T ss_dssp ---C-------HHHHHHHHHHTTCTTCC
T ss_pred ---H-------HHHHHHHHHHCCCcEEE
Confidence 1 23355666777786543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=113.61 Aligned_cols=121 Identities=16% Similarity=0.008 Sum_probs=87.0
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC---CCCeeEEEec
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYP---SRAFDMAHCS 289 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfp---d~sFDlV~~~ 289 (544)
.+.+|||||||+|..+..|+.. .|+++|+++.++..+.... .+.+. ++.+..++++.++.. +++||+|+|.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAI-EVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4568999999999988888754 5888899887775554433 33454 588888888887753 4799999996
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeee
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~ 359 (544)
.+. +...++.++.++|||||+|++.... ...+ +...+....+.++++...
T Consensus 159 a~~-----~~~~ll~~~~~~LkpgG~l~~~~g~-----------~~~~----e~~~~~~~l~~~G~~~~~ 208 (249)
T 3g89_A 159 AVA-----PLCVLSELLLPFLEVGGAAVAMKGP-----------RVEE----ELAPLPPALERLGGRLGE 208 (249)
T ss_dssp SSC-----CHHHHHHHHGGGEEEEEEEEEEECS-----------CCHH----HHTTHHHHHHHHTEEEEE
T ss_pred CcC-----CHHHHHHHHHHHcCCCeEEEEEeCC-----------CcHH----HHHHHHHHHHHcCCeEEE
Confidence 532 3578999999999999999886431 1122 233456667778887654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-11 Score=127.42 Aligned_cols=124 Identities=14% Similarity=0.058 Sum_probs=93.7
Q ss_pred CCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---C-cEEEeCCccchHHHHHHH------HHHcC
Q 009069 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---N-ILAVSFAPRDTHEAQVQF------ALERG 263 (544)
Q Consensus 194 g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~-V~~vdisp~dls~a~v~~------A~erg 263 (544)
...|++.....+..+.+.+.+..+. +|||||||+|.++..++.. . ++++|+++.++..+.... +...+
T Consensus 151 ~~vYGEt~~~~i~~il~~l~l~~gd--~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G 228 (438)
T 3uwp_A 151 PEVYGETSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG 228 (438)
T ss_dssp GGGGGGTHHHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCCCCHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456777778888888888776655 8999999999999888753 3 889999876655444321 12223
Q ss_pred ---CCeEEEEeccccCCCCC--CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 264 ---VPALIGVMASIRLPYPS--RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 264 ---v~~~~~v~d~~~LPfpd--~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.++.+..+|+..+|+.+ ..||+|+++..+ + .++....|.++.|+|||||.|++..+
T Consensus 229 l~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F-~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 229 KKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-F-GPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp BCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-C-CHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred CCCCCeEEEECcccCCccccccCCccEEEEcccc-c-CchHHHHHHHHHHcCCCCcEEEEeec
Confidence 35889999998888754 479999998765 3 34468889999999999999998753
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-11 Score=114.84 Aligned_cols=118 Identities=15% Similarity=0.096 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
.+..++.+.+.+... ..+.+|||+|||+|.++..+++. .++++|+++.++..+..... ..+..+.+.++|...
T Consensus 14 ~~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~- 90 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRM-PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE-RFGAVVDWAAADGIE- 90 (215)
T ss_dssp HHHHHHHHHHHHTTC-CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHH-
T ss_pred HHHHHHHHHHHhhhc-CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH-HhCCceEEEEcchHh-
Confidence 344555666665431 23458999999999999999886 57888888877755543332 223356666667665
Q ss_pred CCCC-----CCeeEEEecccccccccC-------------------------hHHHHHHHHHcccCCcE-EEEEeC
Q 009069 277 PYPS-----RAFDMAHCSRCLIPWGQY-------------------------DGLYLIEVDRVLRPGGY-WILSGP 321 (544)
Q Consensus 277 Pfpd-----~sFDlV~~~~~l~h~~~d-------------------------~~~~L~Ei~RVLKPGG~-Lvis~p 321 (544)
++++ ++||+|+++..+++.... ...++.++.++|||||+ +++..+
T Consensus 91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 5555 899999997655332210 05788899999999999 555543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=120.43 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=77.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||||||+|.++..++++ .++++|+++ ++..+. +.+...+.. +.+..+|...+++++++||+|++....+
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHH-HHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 348999999999999999987 578889984 554443 444455554 8899999999999999999999966433
Q ss_pred c--cccChHHHHHHHHHcccCCcEEEEE
Q 009069 294 P--WGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 294 h--~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
+ .......++.++.|+|||||.++..
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 3 2344588999999999999999854
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=107.89 Aligned_cols=121 Identities=13% Similarity=-0.027 Sum_probs=85.5
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEe
Q 009069 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVM 271 (544)
Q Consensus 197 F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~ 271 (544)
.....+...+.+.+.+... ..+.+|||+|||+|.++..++++ .++++|+++.++..++.... ..++ .+.+..+
T Consensus 24 ~rp~~~~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 101 (187)
T 2fhp_A 24 TRPTTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA-ITKEPEKFEVRKM 101 (187)
T ss_dssp SCCCCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEES
T ss_pred cCcCHHHHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH-HhCCCcceEEEEC
Confidence 3445566777777776421 22448999999999999988775 47888998877765554433 3343 4778888
Q ss_pred ccccC----CCCCCCeeEEEecccccccccChHHHHHHH--HHcccCCcEEEEEeC
Q 009069 272 ASIRL----PYPSRAFDMAHCSRCLIPWGQYDGLYLIEV--DRVLRPGGYWILSGP 321 (544)
Q Consensus 272 d~~~L----Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei--~RVLKPGG~Lvis~p 321 (544)
|.... ++.+++||+|++...++ . ......+..+ .++|||||.+++..+
T Consensus 102 d~~~~~~~~~~~~~~fD~i~~~~~~~-~-~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 102 DANRALEQFYEEKLQFDLVLLDPPYA-K-QEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCGG-G-CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cHHHHHHHHHhcCCCCCEEEECCCCC-c-hhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 86552 23367899999987753 2 2346777777 899999999999875
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-10 Score=118.85 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=76.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
..+|||||||+|.++..++++ .++++|+ +..+..+...+. +.++ .+.+..+|.. .+++. .||+|++..++
T Consensus 203 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 278 (369)
T 3gwz_A 203 AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLT-GRGLADRCEILPGDFF-ETIPD-GADVYLIKHVL 278 (369)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCG
T ss_pred CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhh-hcCcCCceEEeccCCC-CCCCC-CceEEEhhhhh
Confidence 458999999999999999876 4566777 555544443332 3333 5888888876 56666 89999999999
Q ss_pred cccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|.+.. ..+|+++.++|||||+|++...
T Consensus 279 h~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 279 HDWDDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp GGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8887633 4799999999999999999763
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8.6e-11 Score=106.59 Aligned_cols=104 Identities=19% Similarity=0.189 Sum_probs=77.9
Q ss_pred HHHHHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 009069 204 YIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (544)
Q Consensus 204 ~i~~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP 277 (544)
.+.++.+.+. ... +.+|||+|||+|.++..+++. .++++|+++ +... ..+.+..+|....+
T Consensus 9 ~l~~~~~~~~~~~~--~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~ 75 (180)
T 1ej0_A 9 KLDEIQQSDKLFKP--GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDEL 75 (180)
T ss_dssp HHHHHHHHHCCCCT--TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHH
T ss_pred HHHHHHHHhCCCCC--CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccch
Confidence 3444555544 333 348999999999999988765 478888877 5421 35677888887766
Q ss_pred --------CCCCCeeEEEecccccccccCh-----------HHHHHHHHHcccCCcEEEEEeC
Q 009069 278 --------YPSRAFDMAHCSRCLIPWGQYD-----------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 --------fpd~sFDlV~~~~~l~h~~~d~-----------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++++||+|++...+++.. .. ..++.++.++|||||.+++..+
T Consensus 76 ~~~~~~~~~~~~~~D~i~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 76 VMKALLERVGDSKVQVVMSDMAPNMSG-TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCCCCS-CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhhccCCCCceeEEEECCCccccC-CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7788999999988774433 33 5889999999999999999865
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.2e-11 Score=115.29 Aligned_cols=101 Identities=13% Similarity=0.015 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCc-cchHHHH--HHHHHHcCC-CeEEEEeccccCCCC-CCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAP-RDTHEAQ--VQFALERGV-PALIGVMASIRLPYP-SRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp-~dls~a~--v~~A~ergv-~~~~~v~d~~~LPfp-d~sFDlV~~~ 289 (544)
+.+|||||||+|.++..|+++ .++++|+++ .++..+. .+.+.+.+. ++.+..+|...+|.. .+.+|.|+++
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~ 104 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISIL 104 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEe
Confidence 448999999999999999853 478889984 3433221 112223344 588888898888632 2566666665
Q ss_pred cccc----ccccChHHHHHHHHHcccCCcEEEEE
Q 009069 290 RCLI----PWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 290 ~~l~----h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
+... +...+...+|.++.|+|||||.|++.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 105 FPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp SCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 4321 11222357899999999999999994
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.6e-10 Score=112.78 Aligned_cols=154 Identities=10% Similarity=0.024 Sum_probs=101.4
Q ss_pred cCCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--C-cEEEeCCccchHHHHHHHHH
Q 009069 184 QGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N-ILAVSFAPRDTHEAQVQFAL 260 (544)
Q Consensus 184 ~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~-V~~vdisp~dls~a~v~~A~ 260 (544)
.|-.|.+......|..........+.+.+ .+ +.+|||+|||+|.++..+++. . ++++|+++.++..++.+ +.
T Consensus 95 ~g~~f~~d~~~~~f~~~~~~~~~~l~~~~--~~--~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n-~~ 169 (278)
T 2frn_A 95 NGIKYKLDVAKIMFSPANVKERVRMAKVA--KP--DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVEN-IH 169 (278)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHHHHHC--CT--TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHH-HH
T ss_pred CCEEEEEEccceeEcCCcHHHHHHHHHhC--CC--CCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HH
Confidence 34444443233444444334444555543 22 348999999999999999875 3 88889988777655543 33
Q ss_pred HcCCC--eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhh
Q 009069 261 ERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTED 338 (544)
Q Consensus 261 ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~ 338 (544)
.+++. +.+..+|...++. +++||+|++... .....++.++.++|||||.|++...... ...
T Consensus 170 ~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~ 232 (278)
T 2frn_A 170 LNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNTVPE-----------KLM 232 (278)
T ss_dssp HTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEEEEG-----------GGT
T ss_pred HcCCCceEEEEECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEEEEeecc-----------ccc
Confidence 44543 7788889888776 789999998543 2346899999999999999999754110 000
Q ss_pred hHhhhhhHHHHHHhhcceeee
Q 009069 339 LKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 339 L~~~~~~ie~la~~l~w~~v~ 359 (544)
.....+.+...++..+|+...
T Consensus 233 ~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 233 PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp TTTTHHHHHHHHHHTTCEEEE
T ss_pred cccHHHHHHHHHHHcCCeeEE
Confidence 012234567788888887654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-11 Score=119.06 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=74.5
Q ss_pred cccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccCCCCCCCee
Q 009069 213 NLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS---IRLPYPSRAFD 284 (544)
Q Consensus 213 ~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~---~~LPfpd~sFD 284 (544)
.+++|+ +|||+|||+|.++..|++. .|.++|+++.++..+. +.+.++ .++..+..+. ...++..+++|
T Consensus 74 ~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~~-~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 74 PVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRDR-RNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTTC-TTEEEEESCTTCGGGGTTTCCCEE
T ss_pred CCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHhh-cCeeEEEEeccCccccccccceEE
Confidence 345555 9999999999999999875 3889999887775443 333333 2455555554 34567788999
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|++.. +.+++...++.++.|+|||||.++++.
T Consensus 150 vVf~d~---~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 150 GLYADV---AQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEECC---CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEec---cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 999754 333445789999999999999999974
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-10 Score=115.38 Aligned_cols=116 Identities=11% Similarity=0.039 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCC---cHHHHHHhh----CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGV---ASWGAYLMS----RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR 275 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGt---G~~a~~La~----~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~ 275 (544)
.+++.+.+.+.... ..++|||||||+ |.++..+.+ ..|+++|+++.++..++.... ....+.+..+|...
T Consensus 63 ~~~~~~~~~l~~~~-~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~~~~v~~~~~D~~~ 139 (274)
T 2qe6_A 63 KVLVRGVRFLAGEA-GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--KDPNTAVFTADVRD 139 (274)
T ss_dssp HHHHHHHHHHHTTT-CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--TCTTEEEEECCTTC
T ss_pred HHHHHHHHHHhhcc-CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--CCCCeEEEEeeCCC
Confidence 34445555543221 235899999999 988766654 258888988777755544331 22357888888754
Q ss_pred CC-----------CCCCCeeEEEecccccccccC-hHHHHHHHHHcccCCcEEEEEeC
Q 009069 276 LP-----------YPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LP-----------fpd~sFDlV~~~~~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+ ++..+||+|++..++||+.++ ...+|+++.++|||||+|+++..
T Consensus 140 ~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 140 PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp HHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred chhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 21 333589999999999887764 58999999999999999999965
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-11 Score=124.91 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP 277 (544)
+...+.+.+.+.... ..+|||+|||+|.++..++++ .++++|+++.++..+.... ...++...+...|....
T Consensus 182 d~~~~~ll~~l~~~~--~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~-~~~~~~~~~~~~d~~~~- 257 (343)
T 2pjd_A 182 DVGSQLLLSTLTPHT--KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL-AANGVEGEVFASNVFSE- 257 (343)
T ss_dssp CHHHHHHHHHSCTTC--CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHH-HHTTCCCEEEECSTTTT-
T ss_pred cHHHHHHHHhcCcCC--CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCEEEEcccccc-
Confidence 333445556554333 337999999999999999865 5899999887776555443 34566667777666543
Q ss_pred CCCCCeeEEEeccccccc----ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCSRCLIPW----GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~----~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+++||+|+++..+|+. ......++.++.|+|||||.|++..+
T Consensus 258 -~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 258 -VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp -CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred -ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 47799999999988542 22237899999999999999999875
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-10 Score=117.67 Aligned_cols=112 Identities=14% Similarity=0.116 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP 277 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP 277 (544)
.+.+.+.+.+....+ .+|||||||+|.++..++++ .++++|+++ ++..+. +.+...+. .+.+..+|...++
T Consensus 51 ~~~~~i~~~~~~~~~--~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~ 126 (340)
T 2fyt_A 51 SYRDFIYQNPHIFKD--KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAM-DIIRLNKLEDTITLIKGKIEEVH 126 (340)
T ss_dssp HHHHHHHHCGGGTTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSC
T ss_pred HHHHHHHhhhhhcCC--CEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHH-HHHHHcCCCCcEEEEEeeHHHhc
Confidence 344555555544443 48999999999999999886 478899985 554443 33444443 5888899999999
Q ss_pred CCCCCeeEEEecccccc--cccChHHHHHHHHHcccCCcEEEE
Q 009069 278 YPSRAFDMAHCSRCLIP--WGQYDGLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h--~~~d~~~~L~Ei~RVLKPGG~Lvi 318 (544)
+++++||+|++....+. .......++.++.|+|||||.++.
T Consensus 127 ~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 127 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred CCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 98899999999763222 222247799999999999999983
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-10 Score=117.55 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=84.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYP 279 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfp 279 (544)
+.+.+.+.... ..+|||||||+|.++..++++ .++++|+ +.++..+..... +.+. .+.+..+|....+++
T Consensus 180 ~~l~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~ 255 (359)
T 1x19_A 180 QLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA-EKGVADRMRGIAVDIYKESYP 255 (359)
T ss_dssp HHHHHHCCCTT--CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH-HTTCTTTEEEEECCTTTSCCC
T ss_pred HHHHHhcCCCC--CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHH-hcCCCCCEEEEeCccccCCCC
Confidence 44555554433 458999999999999999875 4688898 777765554443 3333 388888998888776
Q ss_pred CCCeeEEEecccccccccC-hHHHHHHHHHcccCCcEEEEEe
Q 009069 280 SRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+. |+|++..++|+|.++ ...+|+++.++|||||+|++..
T Consensus 256 ~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 256 EA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp CC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred CC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 54 999999999998763 3789999999999999998876
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-10 Score=110.53 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
...+.+.+.+....+. +|||||||+|.++..|++. .++++|+++..+..+.... ...+ .+.+..+|.......+
T Consensus 57 ~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~-~v~~~~~d~~~~~~~~ 132 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL-SYYN-NIKLILGDGTLGYEEE 132 (231)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTCS-SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCC--EEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHH-hhcC-CeEEEECCcccccccC
Confidence 4455666666555444 8999999999999999886 4777787665554333222 1223 6788888876633346
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
++||+|++..+++|+. .++.++|||||.+++..++
T Consensus 133 ~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 133 KPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp CCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEECS
T ss_pred CCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEcC
Confidence 7899999999987765 3689999999999999763
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=119.45 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
..+|||||||+|.++..++++ .++++|+ +..+..+...+ .+.+ ..+.+..+|.. .+++. +||+|++..++
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 245 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRF-LDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL 245 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhh-hhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence 468999999999999999874 3666777 65554444332 2334 35888888876 56665 89999999999
Q ss_pred cccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|.++. ..+|+++.++|||||+|++...
T Consensus 246 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 246 HDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 9998642 7899999999999999999865
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=116.84 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--C---cEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N---ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL 276 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~---V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~L 276 (544)
...+.+.+.+...++. +|||||||+|.++..+++. . ++++|+++.++..+.... ...+. ++.+..+|....
T Consensus 62 ~~~~~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~g~~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-ERLGIENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCeEEEECChhhc
Confidence 4455666666655544 8999999999999999875 3 889999887665544333 33443 478888888776
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.++++||+|++..+++|+. .++.++|||||.+++...
T Consensus 139 ~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 139 VPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBC
T ss_pred cccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEEC
Confidence 55678899999999987665 578899999999999865
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=110.14 Aligned_cols=117 Identities=8% Similarity=0.011 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccc
Q 009069 200 GADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASI 274 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~ 274 (544)
..+...+.+.+.+... .+ .+|||+|||+|.++..++.+ .|+++|+++.++..++.+. ...+. ++.+..+|..
T Consensus 37 ~~~~~~~~l~~~l~~~~~~--~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~-~~~~~~~v~~~~~D~~ 113 (202)
T 2fpo_A 37 TTDRVRETLFNWLAPVIVD--AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNL-ATLKAGNARVVNSNAM 113 (202)
T ss_dssp -CHHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHH-HHTTCCSEEEECSCHH
T ss_pred CHHHHHHHHHHHHHhhcCC--CeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEECCHH
Confidence 3455555666665432 33 48999999999999987765 4788888887776555433 33444 6788888876
Q ss_pred c-CCCCCCCeeEEEecccccccccChHHHHHHHHH--cccCCcEEEEEeC
Q 009069 275 R-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDR--VLRPGGYWILSGP 321 (544)
Q Consensus 275 ~-LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~R--VLKPGG~Lvis~p 321 (544)
. ++..+++||+|++...+ +. .....++.++.+ +|||||.|+++..
T Consensus 114 ~~~~~~~~~fD~V~~~~p~-~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 114 SFLAQKGTPHNIVFVDPPF-RR-GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp HHHSSCCCCEEEEEECCSS-ST-TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHhhcCCCCCEEEECCCC-CC-CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 6 56667899999998765 32 334678888865 6999999999865
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=106.53 Aligned_cols=116 Identities=14% Similarity=0.015 Sum_probs=82.8
Q ss_pred cCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCC---CCCCeeEEEecc
Q 009069 215 KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPY---PSRAFDMAHCSR 290 (544)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPf---pd~sFDlV~~~~ 290 (544)
.-+.+.+|||||||. + . .|+++.+++.|+++.. .+.+.++|...+++ ++++||+|+|+.
T Consensus 9 g~~~g~~vL~~~~g~-----------v---~---vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~ 71 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS-----------S---P---VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGL 71 (176)
T ss_dssp TCCTTSEEEEEECTT-----------S---C---HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred CCCCCCEEEEecCCc-----------e---e---eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECC
Confidence 334456999999996 1 1 3667777777776532 47888899988887 889999999999
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcc
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 355 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w 355 (544)
++||+..+...+|+++.|+|||||+|++..+....... ..|..+ .+++....+..+|
T Consensus 72 ~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-~~~~~~-------~~~~~~~l~~aGf 128 (176)
T 2ld4_A 72 VPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDN-NSKVKT-------ASKLCSALTLSGL 128 (176)
T ss_dssp STTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCS-SSSSCC-------HHHHHHHHHHTTC
T ss_pred hhhhcccCHHHHHHHHHHHCCCCEEEEEEccccccccc-ccccCC-------HHHHHHHHHHCCC
Confidence 99777355799999999999999999997552211100 112111 2346667778888
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=4e-10 Score=110.04 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=81.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEeccccCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALE-RGVPALIGVMASIRLPYP 279 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~e-rgv~~~~~v~d~~~LPfp 279 (544)
..+.+.+...++. +|||+|||+|.++..+++. .++++|+++..+..++..+... ....+.+...|....+++
T Consensus 86 ~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLDLAPGM--RVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHcCCCCCC--EEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 3455555555444 8999999999999998875 4788888776665555444333 223578888898888888
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||+|++. +. ++..++.++.++|||||.+++..+
T Consensus 164 ~~~~D~v~~~-----~~-~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 164 EAAYDGVALD-----LM-EPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp TTCEEEEEEE-----SS-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCcCEEEEC-----Cc-CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 8899999983 22 456899999999999999999976
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-10 Score=107.86 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP 277 (544)
.....+.+.+....+. +|||||||+|.++..+++. .++++|+++..+..+...........+.+...|... +
T Consensus 64 ~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~ 140 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGM--KVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL-G 140 (215)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG-C
T ss_pred HHHHHHHHhhCCCCCC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-C
Confidence 3445566666554444 8999999999999988764 478888877666555443332222347777777643 3
Q ss_pred CC-CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 278 YP-SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 278 fp-d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
++ +++||+|++..+++++. .++.++|||||.+++..++
T Consensus 141 ~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 141 YEPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp CGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEESS
T ss_pred CCCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEECC
Confidence 33 67899999999987665 4889999999999999763
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-11 Score=124.23 Aligned_cols=92 Identities=10% Similarity=0.063 Sum_probs=72.4
Q ss_pred CCEEEEeCCC------CcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC------CC
Q 009069 219 IRTAIDTGCG------VASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP------SR 281 (544)
Q Consensus 219 ~r~VLDIGCG------tG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp------d~ 281 (544)
..+||||||| +|..+..++++ .|+++|+++.+. ....++.+.++|...+|+. ++
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcccC
Confidence 4589999999 66555555542 589999988762 1345789999999998887 78
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|+|.. .|++ .+...+|+++.|+|||||+|++.+.
T Consensus 288 sFDlVisdg-sH~~-~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 288 PFDIVIDDG-SHIN-AHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CEEEEEECS-CCCH-HHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CccEEEECC-cccc-hhHHHHHHHHHHhcCCCeEEEEEec
Confidence 999999975 4344 4468999999999999999999864
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=114.19 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=75.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH-----HcC-CCeEEEEecccc-CC--CCCCCeeE
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL-----ERG-VPALIGVMASIR-LP--YPSRAFDM 285 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~-----erg-v~~~~~v~d~~~-LP--fpd~sFDl 285 (544)
..+|||||||+|.++..|+++ .++++|+++.++..+...... ..+ .++.+..+|+.. ++ +++++||.
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 347999999999999999875 478899988777655543322 123 358888888876 66 78899999
Q ss_pred EEecccccccccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLIPWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~h~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|++...- +|... ...++.++.|+|||||.|++...
T Consensus 127 v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 127 MFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 9875533 33221 14799999999999999999864
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-10 Score=118.26 Aligned_cols=109 Identities=22% Similarity=0.306 Sum_probs=78.7
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPS 280 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd 280 (544)
.+.+.+.... ..+|||||||+|.++..++++ .++++|+ +.++..+..... ..++ .+.+..+|... +++.
T Consensus 173 ~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~-~~~~ 247 (374)
T 1qzz_A 173 APADAYDWSA--VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA-DAGLADRVTVAEGDFFK-PLPV 247 (374)
T ss_dssp HHHHTSCCTT--CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCSC
T ss_pred HHHHhCCCCC--CCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHH-hcCCCCceEEEeCCCCC-cCCC
Confidence 3444444333 458999999999999999876 3566676 655544443332 3343 48888888754 4444
Q ss_pred CCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.||+|++..++|+|.+.. ..+|+++.++|||||+|++...
T Consensus 248 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 248 -TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 399999999998887633 5899999999999999999765
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.1e-10 Score=114.38 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=83.7
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYPS 280 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~LPfpd 280 (544)
..+.+.+.... .+|||||||+|.++..++++ .++++|+ +..+..+........ ...+.+..+|... +++
T Consensus 158 ~~~~~~~~~~~---~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~- 231 (334)
T 2ip2_A 158 HEIPRLLDFRG---RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP- 231 (334)
T ss_dssp HHHHHHSCCTT---CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred HHHHHhCCCCC---CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence 34444444333 58999999999999999875 4788999 878766655443221 2357888888766 555
Q ss_pred CCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|++..++|+|.+.. ..+++++.++|||||++++...
T Consensus 232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6799999999999887633 5899999999999999999864
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=119.05 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC--CCCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL--PYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L--Pfpd~sFDlV~~~~ 290 (544)
..+|||||||+|.++..++++ .++++|+ +.++..+.. .+.+.+. .+.+..+|.... |++ ++||+|++..
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRK-QTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHH-HHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHH-HHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 458999999999999999874 3666676 544433332 2222333 578888888775 566 7899999999
Q ss_pred cccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++|+|.++. ..+|+++.|+|||||+|++...
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 999998643 6889999999999999999864
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.2e-10 Score=117.39 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=77.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||||||+|.++..++++ .|+++|++ .++..+. +.+...+.. +.+..+|...++++ ++||+|++....+
T Consensus 64 ~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~ 140 (376)
T 3r0q_C 64 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR-ALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGY 140 (376)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH-HHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBT
T ss_pred CCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH-HHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhh
Confidence 458999999999999999987 57889998 6775444 444455553 88999999998877 8999999966443
Q ss_pred ccc--cChHHHHHHHHHcccCCcEEEEEe
Q 009069 294 PWG--QYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 294 h~~--~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
... .....++.++.|+|||||.|+++.
T Consensus 141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 141 FLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred cccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 332 334789999999999999998853
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.3e-10 Score=115.96 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L 276 (544)
..|.+.+.+.+....+ .+|||||||+|.++..++++ .++++|+++ ++. ...+.+...+. .+.+..+|...+
T Consensus 36 ~~y~~~i~~~l~~~~~--~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~-~a~~~~~~~~l~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 36 GTYQRAILQNHTDFKD--KIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQ-HAEVLVKSNNLTDRIVVIPGKVEEV 111 (348)
T ss_dssp HHHHHHHHHTGGGTTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHH-HHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhccccCCc--CEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHH-HHHHHHHHcCCCCcEEEEEcchhhC
Confidence 3455566666655444 48999999999999999876 478888875 553 33344444454 588888888888
Q ss_pred CCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
+++ ++||+|++...++|+.... ...+.++.++|||||.+++.
T Consensus 112 ~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 112 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred CCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 765 5799999998887776533 67888999999999999875
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=9.9e-10 Score=109.03 Aligned_cols=108 Identities=15% Similarity=0.086 Sum_probs=82.1
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHH-c--CCCeEEEEeccccCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALE-R--GVPALIGVMASIRLP 277 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~e-r--gv~~~~~v~d~~~LP 277 (544)
..+.+.+....+. +|||+|||+|.++..|++. .++++|+++..+..+....... . ..++.+..+|....+
T Consensus 89 ~~i~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHcCCCCCC--EEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 4555555555544 8999999999999998874 4778888776665555444433 2 236788888988888
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++++||+|++.. . ++..++.++.++|||||.+++..+
T Consensus 167 ~~~~~~D~v~~~~-----~-~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVLDM-----L-APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEEES-----S-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCceeEEEECC-----c-CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 8888999999832 2 456899999999999999999976
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-10 Score=113.93 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCcH----HHHHHhhC--------CcEEEeCCccchHHHHHHHH--------------H-----H---cC-
Q 009069 219 IRTAIDTGCGVAS----WGAYLMSR--------NILAVSFAPRDTHEAQVQFA--------------L-----E---RG- 263 (544)
Q Consensus 219 ~r~VLDIGCGtG~----~a~~La~~--------~V~~vdisp~dls~a~v~~A--------------~-----e---rg- 263 (544)
..+|||+|||+|. ++..|++. .|+++|+++.++..++.... + . .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 3579999999996 56556543 47888887777765543210 0 0 00
Q ss_pred --------CCeEEEEeccccCCCC-CCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 264 --------VPALIGVMASIRLPYP-SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 264 --------v~~~~~v~d~~~LPfp-d~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..+.|.+.|....|++ .+.||+|+|..+++++.+.. ..++.++.++|+|||+|++..
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 1467888888776665 67899999999998886532 789999999999999999853
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.07 E-value=7.4e-10 Score=107.46 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=69.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----LPYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~----LPfpd~sFDlV~~~~ 290 (544)
+.+|||+|||+|.++..|++. .++++|+++.++..+.. .+..+ .++.+..+|... +++. ++||+|++
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~-~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~-- 149 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD-ACAER-ENIIPILGDANKPQEYANIV-EKVDVIYE-- 149 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH-HTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEE--
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHH-HhhcC-CCeEEEECCCCCcccccccC-ccEEEEEE--
Confidence 458999999999999999875 37788887765543332 22222 467888888877 7766 78999993
Q ss_pred cccccccCh---HHHHHHHHHcccCCcEEEEE
Q 009069 291 CLIPWGQYD---GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 291 ~l~h~~~d~---~~~L~Ei~RVLKPGG~Lvis 319 (544)
+.. ++ ..++.++.++|||||.|++.
T Consensus 150 ---~~~-~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 150 ---DVA-QPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ---CCC-STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---ecC-ChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 322 23 67899999999999999997
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.5e-10 Score=108.46 Aligned_cols=109 Identities=13% Similarity=0.009 Sum_probs=75.1
Q ss_pred HHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC---
Q 009069 207 DIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--- 277 (544)
Q Consensus 207 ~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--- 277 (544)
.+.+.+. +....+.+|||+|||+|.++..+++. .|+++|+++.++.. .++.+.++ .++.+..+|+....
T Consensus 64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~-l~~~a~~r-~nv~~i~~Da~~~~~~~ 141 (232)
T 3id6_C 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE-LLLVAQRR-PNIFPLLADARFPQSYK 141 (232)
T ss_dssp HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH-HHHHHHHC-TTEEEEECCTTCGGGTT
T ss_pred HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc-CCeEEEEcccccchhhh
Confidence 4444443 22233459999999999999998874 48999998876532 34455554 46788888876532
Q ss_pred CCCCCeeEEEecccccccccChH-HHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDG-LYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~-~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...++||+|++.... + +.. .++..+.++|||||.|+++..
T Consensus 142 ~~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 142 SVVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp TTCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 224689999997643 2 343 445566669999999999853
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-10 Score=109.74 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=73.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc---CCCCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR---LPYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~---LPfpd~sFDlV~~~~ 290 (544)
+.+|||+|||+|.++..|+++ .++++|+++.++. .+++.+..+ .++.+..+|... +++.+++||+|++..
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~-~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR-DLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHH-HHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHH-HHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 458999999999999999875 4788888776543 344556554 467888888766 455678999999965
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ..+....++.++.++|||||.|+++..
T Consensus 156 ~---~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 156 A---QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp C---CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C---CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 3 222125568899999999999999754
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=107.89 Aligned_cols=116 Identities=12% Similarity=0.019 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccc
Q 009069 201 ADAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASI 274 (544)
Q Consensus 201 a~~~i~~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~ 274 (544)
.+...+.+.+.+. ... +.+|||+|||+|.++..++++ .++++|+++.++..++.. +...+. .+.+..+|..
T Consensus 15 ~~~~~~~~~~~l~~~~~--~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~~~d~~ 91 (177)
T 2esr_A 15 SDKVRGAIFNMIGPYFN--GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDN-IIMTKAENRFTLLKMEAE 91 (177)
T ss_dssp ---CHHHHHHHHCSCCC--SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHH-HHTTTCGGGEEEECSCHH
T ss_pred HHHHHHHHHHHHHhhcC--CCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECcHH
Confidence 3444455555554 233 448999999999999999876 478888877666544433 333343 3778877766
Q ss_pred c-CCCCCCCeeEEEecccccccccChHHHHHHHH--HcccCCcEEEEEeC
Q 009069 275 R-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVD--RVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~-LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~--RVLKPGG~Lvis~p 321 (544)
. ++..+++||+|++...++. .....++..+. ++|||||.+++..+
T Consensus 92 ~~~~~~~~~fD~i~~~~~~~~--~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 92 RAIDCLTGRFDLVFLDPPYAK--ETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp HHHHHBCSCEEEEEECCSSHH--HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HhHHhhcCCCCEEEECCCCCc--chHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 5 4444567999999876522 12356777776 99999999999875
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.06 E-value=8.3e-10 Score=108.07 Aligned_cols=106 Identities=13% Similarity=0.182 Sum_probs=78.7
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-C-eEEEEeccccCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-P-ALIGVMASIRLPY 278 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~-~~~~v~d~~~LPf 278 (544)
..+.+.+....+. +|||+|||+|.++..+++. .++++|+++..+..+...+. ..+. + +.+...|... ++
T Consensus 83 ~~i~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~-~~ 158 (255)
T 3mb5_A 83 ALIVAYAGISPGD--FIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK-WAGFDDRVTIKLKDIYE-GI 158 (255)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH-HHTCTTTEEEECSCGGG-CC
T ss_pred HHHHHhhCCCCCC--EEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHH-HcCCCCceEEEECchhh-cc
Confidence 3555566555544 8999999999999999876 36778887766654444333 3343 3 7888888764 47
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++||+|++.. + ++..++.++.++|||||.+++..+
T Consensus 159 ~~~~~D~v~~~~-----~-~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 159 EEENVDHVILDL-----P-QPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp CCCSEEEEEECS-----S-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCcCEEEECC-----C-CHHHHHHHHHHHcCCCCEEEEEEC
Confidence 788999999842 2 357899999999999999999876
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-10 Score=112.86 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=74.7
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-CC-CeEEEEeccccCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER-GV-PALIGVMASIRLPYP 279 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~er-gv-~~~~~v~d~~~LPfp 279 (544)
.+.+.+...++ .+|||+|||+|.++..+++. .++++|+++..+..+..... .. +. ++.+..+|... +++
T Consensus 101 ~~~~~~~~~~~--~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~g~~~v~~~~~d~~~-~~~ 176 (275)
T 1yb2_A 101 YIIMRCGLRPG--MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS-EFYDIGNVRTSRSDIAD-FIS 176 (275)
T ss_dssp -----CCCCTT--CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHH-TTSCCTTEEEECSCTTT-CCC
T ss_pred HHHHHcCCCCc--CEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH-hcCCCCcEEEEECchhc-cCc
Confidence 34444444444 48999999999999998875 47777887765544443322 22 43 57888888766 677
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||+|++ +.+ ++..++.++.++|||||.+++..+
T Consensus 177 ~~~fD~Vi~-----~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 177 DQMYDAVIA-----DIP-DPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp SCCEEEEEE-----CCS-CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred CCCccEEEE-----cCc-CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 789999998 233 457899999999999999999976
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-10 Score=115.10 Aligned_cols=110 Identities=18% Similarity=0.290 Sum_probs=79.4
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPS 280 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~--V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd 280 (544)
.+.+.+.... ..+|||||||+|.++..++++ + ++++|+ +.++..+..... ..++ .+.+..+|... +++.
T Consensus 174 ~l~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~-~~~~ 248 (360)
T 1tw3_A 174 APAAAYDWTN--VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK-DEGLSDRVDVVEGDFFE-PLPR 248 (360)
T ss_dssp HHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCSS
T ss_pred HHHHhCCCcc--CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHH-hcCCCCceEEEeCCCCC-CCCC
Confidence 3444444333 458999999999999999875 3 455666 656654443333 3344 58888888654 4444
Q ss_pred CCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeCC
Q 009069 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
.||+|++..++|+|.+.. ..+++++.++|||||+|++..+.
T Consensus 249 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 249 -KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 499999999998887633 58999999999999999998653
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.05 E-value=8.5e-10 Score=113.52 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L 276 (544)
..|.+.+.+.+....+. +|||||||+|.++..++++ .++++|+++ ++..+ .+.+...+. .+.+..+|...+
T Consensus 24 ~~y~~ai~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a-~~~~~~~~~~~~i~~~~~d~~~~ 99 (328)
T 1g6q_1 24 LSYRNAIIQNKDLFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMA-KELVELNGFSDKITLLRGKLEDV 99 (328)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHH-HHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhhHhhcCCC--EEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHH-HHHHHHcCCCCCEEEEECchhhc
Confidence 34445555554444443 8999999999999999886 478899984 55433 334444554 478888999999
Q ss_pred CCCCCCeeEEEeccccccc--ccChHHHHHHHHHcccCCcEEEE
Q 009069 277 PYPSRAFDMAHCSRCLIPW--GQYDGLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~--~~d~~~~L~Ei~RVLKPGG~Lvi 318 (544)
++++++||+|++....+++ ......++.++.|+|||||.++.
T Consensus 100 ~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 8888899999997544333 22347899999999999999984
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.9e-10 Score=113.79 Aligned_cols=107 Identities=17% Similarity=0.152 Sum_probs=74.2
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHH-HHHHcC--CCeEEEEeccccCCCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQ-FALERG--VPALIGVMASIRLPYPSR 281 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~-~A~erg--v~~~~~v~d~~~LPfpd~ 281 (544)
.+.+.+... ...+|||||||+|.++..++++ ++.++.+ |+.....+ .+...+ ..+.+..+|.. .+++
T Consensus 175 ~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p-- 246 (348)
T 3lst_A 175 ILARAGDFP--ATGTVADVGGGRGGFLLTVLREHPGLQGVLL---DRAEVVARHRLDAPDVAGRWKVVEGDFL-REVP-- 246 (348)
T ss_dssp HHHHHSCCC--SSEEEEEETCTTSHHHHHHHHHCTTEEEEEE---ECHHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--
T ss_pred HHHHhCCcc--CCceEEEECCccCHHHHHHHHHCCCCEEEEe---cCHHHhhcccccccCCCCCeEEEecCCC-CCCC--
Confidence 344444433 3458999999999999999875 4444444 32222110 000111 24788888875 4555
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|++..++|||.+.. ..+|+++.|+|||||+|++...
T Consensus 247 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 247 HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 899999999999988633 6999999999999999999864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=111.48 Aligned_cols=112 Identities=10% Similarity=0.098 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
.+.+.+.+.+.+ .. ..+|||+|||+|.++..++.. .++++|+++.++.-+... +...|+...+.+.|....
T Consensus 36 ld~fY~~~~~~l--~~--~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~-~~~~g~~~~v~~~d~~~~ 110 (200)
T 3fzg_A 36 LNDFYTYVFGNI--KH--VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSI-IGKLKTTIKYRFLNKESD 110 (200)
T ss_dssp HHHHHHHHHHHS--CC--CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHH-HHHSCCSSEEEEECCHHH
T ss_pred HHHHHHHHHhhc--CC--CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHhcCCCccEEEeccccc
Confidence 344455555555 22 348999999999999999654 578888888777555443 444566544544665444
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
.+.++||+|.+..++|+. ++....+.++.+.|||||.||--
T Consensus 111 -~~~~~~DvVLa~k~LHlL-~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 111 -VYKGTYDVVFLLKMLPVL-KQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp -HTTSEEEEEEEETCHHHH-HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred -CCCCCcChhhHhhHHHhh-hhhHHHHHHHHHHhCCCCEEEEe
Confidence 467889999999999888 55666777999999999988765
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9e-10 Score=107.09 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP 277 (544)
......+.+.+....+. +|||||||+|.++..|++. .++++|+++..+..+..... ..+. ++.+..+|. ..+
T Consensus 77 ~~~~~~~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~-~~~ 152 (235)
T 1jg1_A 77 PHMVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLE-RAGVKNVHVILGDG-SKG 152 (235)
T ss_dssp HHHHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCG-GGC
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEECCc-ccC
Confidence 33455666666555444 8999999999999999874 68889998766655544333 3343 577777776 455
Q ss_pred CCCC-CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 278 YPSR-AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 278 fpd~-sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+++. .||+|++..+++++. .++.++|||||.+++..++
T Consensus 153 ~~~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 153 FPPKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEECS
T ss_pred CCCCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEec
Confidence 6554 499999998886654 3789999999999999763
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.3e-10 Score=104.74 Aligned_cols=111 Identities=12% Similarity=-0.056 Sum_probs=78.7
Q ss_pred HHHHHHHHhcccC-CCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 009069 204 YIDDIGKLINLKD-GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~-g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP 277 (544)
+.+.+.+.+.... ..+.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+. ++.+...|...++
T Consensus 50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~ 128 (207)
T 1jsx_A 50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQ-HELKLENIEPVQSRVEEFP 128 (207)
T ss_dssp HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-HHTTCSSEEEEECCTTTSC
T ss_pred HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCeEEEecchhhCC
Confidence 3444444443221 12348999999999999888864 5788888876665444333 33444 4788888887766
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++||+|++... .+...++.++.++|+|||.+++...
T Consensus 129 -~~~~~D~i~~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 129 -SEPPFDGVISRAF-----ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp -CCSCEEEEECSCS-----SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred -ccCCcCEEEEecc-----CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 5678999998542 2357899999999999999999854
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-09 Score=104.49 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=78.5
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-----CCCeEEEEecccc
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMASIR 275 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~er-----gv~~~~~v~d~~~ 275 (544)
..+.+.+......+.+|||+|||+|.++..|++. .++++|+++..+..+........ ...+.+..+|...
T Consensus 65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 144 (226)
T 1i1n_A 65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 144 (226)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence 3445555422223448999999999999988764 57888988876655554333211 1257888888776
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
.+..+++||+|++...++++ +.++.++|||||.|+++..+
T Consensus 145 ~~~~~~~fD~i~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 145 GYAEEAPYDAIHVGAAAPVV-------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CCGGGCCEEEEEECSBBSSC-------CHHHHHTEEEEEEEEEEESC
T ss_pred CcccCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEec
Confidence 66667789999998877544 36789999999999998764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-10 Score=110.49 Aligned_cols=103 Identities=16% Similarity=0.053 Sum_probs=72.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHc--CC--C-----------------------
Q 009069 219 IRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALER--GV--P----------------------- 265 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~er--gv--~----------------------- 265 (544)
..+|||+|||+|.++..+++. .++++|+++.++..+........ ++ .
T Consensus 52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (250)
T 1o9g_A 52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 131 (250)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence 458999999999999998764 57889998877755543322110 11 0
Q ss_pred --eE-------------EEEeccccCCC-----CCCCeeEEEecccccccccC--------hHHHHHHHHHcccCCcEEE
Q 009069 266 --AL-------------IGVMASIRLPY-----PSRAFDMAHCSRCLIPWGQY--------DGLYLIEVDRVLRPGGYWI 317 (544)
Q Consensus 266 --~~-------------~~v~d~~~LPf-----pd~sFDlV~~~~~l~h~~~d--------~~~~L~Ei~RVLKPGG~Lv 317 (544)
+. +...|...... ..++||+|+|+..+++.... ...++.++.++|||||+|+
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 211 (250)
T 1o9g_A 132 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA 211 (250)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEE
Confidence 23 77777655321 34589999998766554321 2589999999999999999
Q ss_pred EEeC
Q 009069 318 LSGP 321 (544)
Q Consensus 318 is~p 321 (544)
++..
T Consensus 212 ~~~~ 215 (250)
T 1o9g_A 212 VTDR 215 (250)
T ss_dssp EEES
T ss_pred EeCc
Confidence 9654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=103.13 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC---------------
Q 009069 219 IRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------------- 277 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--------------- 277 (544)
+.+|||+|||+|.++..++++ .++++|+++.. ....+.+.++|...++
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~ 91 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNN 91 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----------
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccccc
Confidence 348999999999999999864 37888887732 1124677788887766
Q ss_pred ----------CCCCCeeEEEecccccccc---cCh-------HHHHHHHHHcccCCcEEEEEeC
Q 009069 278 ----------YPSRAFDMAHCSRCLIPWG---QYD-------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 ----------fpd~sFDlV~~~~~l~h~~---~d~-------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++++||+|+|..++++.. .+. ..++.++.++|||||.|++...
T Consensus 92 ~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 92 NSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 5678999999988764321 111 1378999999999999999753
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-09 Score=105.03 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=78.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----------CcEEEeCCccchHHHHHHHHHHc-----CCCeEE
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----------NILAVSFAPRDTHEAQVQFALER-----GVPALI 268 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----------~V~~vdisp~dls~a~v~~A~er-----gv~~~~ 268 (544)
....+.+.+......+.+|||||||+|.++..|++. .++++|+++..+..+........ ..++.+
T Consensus 70 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 149 (227)
T 1r18_A 70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 149 (227)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEE
Confidence 334555555312223448999999999999888763 58889998877765554443321 235778
Q ss_pred EEeccccCCCCC-CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 269 GVMASIRLPYPS-RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 269 ~v~d~~~LPfpd-~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..+|... ++++ ++||+|++...++++. .++.++|||||.+++...
T Consensus 150 ~~~d~~~-~~~~~~~fD~I~~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 150 VEGDGRK-GYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp EESCGGG-CCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred EECCccc-CCCcCCCccEEEECCchHHHH-------HHHHHHhcCCCEEEEEEe
Confidence 8888766 5554 7899999998886544 678999999999999865
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.4e-10 Score=115.94 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
..+|||||||+|.++..++++ ++.++.+ |+ +.+++.+.+. ..+.+..+|... ++++ ||+|++..++|||.
T Consensus 210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 210 ISTLVDVGGGSGRNLELIISKYPLIKGINF---DL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWS 281 (372)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGGGSC
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCeEEEe---Ch-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccccCC
Confidence 458999999999999999886 4555543 33 3444444332 357888888766 6665 99999999998887
Q ss_pred cCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 297 QYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 297 ~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.. ..+|+++.|+|||||+|++..
T Consensus 282 d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 282 DEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 632 399999999999999999984
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-10 Score=116.04 Aligned_cols=96 Identities=18% Similarity=0.133 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
...+|||||||+|.++..|+++ ++.++.+ |+ +.+++.+.+. ..+.+..+|... |++++ |+|++..++|+|
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~ 274 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINF---DL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDW 274 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGB
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEE---eh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcC
Confidence 3468999999999999999875 4444444 33 3444444332 468888888776 77754 999999999999
Q ss_pred ccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 296 GQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+.. ..+|+++.++|||||+|+|.+.
T Consensus 275 ~~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 275 SDEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8644 5899999999999999999864
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-11 Score=117.03 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
+.+|||+|||+|.++..|++. .++++|+++.++..+... +...++ .+.+..+|...++ ++++||+|+++..+++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNN-AEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG 156 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred CCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence 348999999999999999987 477888887766555433 334454 6888999988776 6789999999998866
Q ss_pred cccChHHHHHHHHHcccCCcEEEEE
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
... ....+.++.++|+|||.+++.
T Consensus 157 ~~~-~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 157 PDY-ATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp GGG-GGSSSBCTTTSCSSCHHHHHH
T ss_pred cch-hhhHHHHHHhhcCCcceeHHH
Confidence 443 455778999999999998775
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.9e-10 Score=108.30 Aligned_cols=144 Identities=12% Similarity=0.111 Sum_probs=83.1
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEEEE-eccccC---C
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGV-MASIRL---P 277 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv~~~~~v-~d~~~L---P 277 (544)
++.+.+.+... ..+.+|||||||+|.++..|++++ |+++|+++.++.. ++++...+.... .+...+ .
T Consensus 25 L~~~L~~~~~~-~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~-----a~~~~~~~~~~~~~~~~~~~~~~ 98 (232)
T 3opn_A 25 LEKALKEFHLE-INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAW-----KIRSDERVVVMEQFNFRNAVLAD 98 (232)
T ss_dssp HHHHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCH-----HHHTCTTEEEECSCCGGGCCGGG
T ss_pred HHHHHHHcCCC-CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHH-----HHHhCccccccccceEEEeCHhH
Confidence 44444444432 234589999999999999998874 7889998888754 333332222111 111111 1
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccc-----cCCCcchhhhHhhhhhHHHHHHh
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHW-----KGWNRTTEDLKSEQNGIETIARS 352 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~-----~~w~~t~e~L~~~~~~ie~la~~ 352 (544)
++...||.+.+..++.++ ..+|.++.|+|||||.|++...|. +...+ .+..+.........+++.++++.
T Consensus 99 ~~~~~~d~~~~D~v~~~l----~~~l~~i~rvLkpgG~lv~~~~p~-~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~ 173 (232)
T 3opn_A 99 FEQGRPSFTSIDVSFISL----DLILPPLYEILEKNGEVAALIKPQ-FEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQ 173 (232)
T ss_dssp CCSCCCSEEEECCSSSCG----GGTHHHHHHHSCTTCEEEEEECHH-HHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCEEEEEEEhhhH----HHHHHHHHHhccCCCEEEEEECcc-cccCHHHhCcCCeecCcchhHHHHHHHHHHHHH
Confidence 111124544444444332 579999999999999999974321 11100 11111222233355678888999
Q ss_pred hcceeee
Q 009069 353 LCWKKLI 359 (544)
Q Consensus 353 l~w~~v~ 359 (544)
.+|+...
T Consensus 174 aGf~v~~ 180 (232)
T 3opn_A 174 LGFSVKG 180 (232)
T ss_dssp HTEEEEE
T ss_pred CCCEEEE
Confidence 9998654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-09 Score=110.69 Aligned_cols=115 Identities=17% Similarity=0.031 Sum_probs=85.1
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh-----CCcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-----RNILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-----~~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP 277 (544)
....+..++....+ .+|||+|||+|.++..++. ..++++|+++.++..+..+ +...++ .+.+.++|...++
T Consensus 191 la~~l~~~~~~~~~--~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n-~~~~g~~~i~~~~~D~~~~~ 267 (354)
T 3tma_A 191 LAQALLRLADARPG--MRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREA-ALASGLSWIRFLRADARHLP 267 (354)
T ss_dssp HHHHHHHHTTCCTT--CCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHH-HHHTTCTTCEEEECCGGGGG
T ss_pred HHHHHHHHhCCCCC--CEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHH-HHHcCCCceEEEeCChhhCc
Confidence 33445555544443 4899999999999988876 3689999988877655544 334455 5889999999998
Q ss_pred CCCCCeeEEEecccccccccC-------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCSRCLIPWGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d-------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+.+.||+|+++..+.....+ ...++.++.++|||||.+++..+
T Consensus 268 ~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 268 RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 888889999997755322211 15789999999999999999976
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=105.20 Aligned_cols=109 Identities=12% Similarity=-0.036 Sum_probs=78.1
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---------CcEEEeCCccchHHHHHHHHHHc-----CCCeEEEEe
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---------NILAVSFAPRDTHEAQVQFALER-----GVPALIGVM 271 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---------~V~~vdisp~dls~a~v~~A~er-----gv~~~~~v~ 271 (544)
..+.+.+......+.+|||||||+|.++..|++. .++++|+++..+..+........ ..++.+..+
T Consensus 68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 147 (227)
T 2pbf_A 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK 147 (227)
T ss_dssp HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence 3444554311222348999999999999988864 47888888776655554443322 236788888
Q ss_pred ccccCC----CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 272 ASIRLP----YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 272 d~~~LP----fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|..... ...++||+|++...++++ +.++.++|||||.+++..+
T Consensus 148 d~~~~~~~~~~~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 148 NIYQVNEEEKKELGLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp CGGGCCHHHHHHHCCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEE
T ss_pred ChHhcccccCccCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEc
Confidence 877755 556789999998887543 4788999999999999865
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.3e-09 Score=102.00 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=72.1
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CCCC--CCCeeEEEec
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LPYP--SRAFDMAHCS 289 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LPfp--d~sFDlV~~~ 289 (544)
.+|||||||+|..+..|++. .++++|+++..+..++..+. +.+. .+.+..+|+.. ++.. .++||+|++.
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQ-LAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 48999999999999999875 47888888776655544333 3344 47888888655 4433 3489999985
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. ......++.++.++|||||+|++...
T Consensus 144 ~~----~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 144 AD----KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp SC----GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred Cc----hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 52 22346899999999999999999754
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=116.73 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHH--HHHH----HHHcC---CCeEE
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEA--QVQF----ALERG---VPALI 268 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a--~v~~----A~erg---v~~~~ 268 (544)
...+..+.+.+.+..+. +|||||||+|.++..|++. .++++|+++..+..+ |++. +...+ .++.+
T Consensus 228 p~~v~~ml~~l~l~~g~--~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 44555666666555444 8999999999999999874 388999988766554 3222 22334 35677
Q ss_pred EEeccccCC--C--CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 269 GVMASIRLP--Y--PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 269 ~v~d~~~LP--f--pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..+|....+ + ..++||+|+++.++ +.++...+|.++.|+|||||.|++..+
T Consensus 306 i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 306 SLKKSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred EEcCccccccccccccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 766543321 2 24689999997665 234457889999999999999999854
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=9.8e-10 Score=114.63 Aligned_cols=95 Identities=21% Similarity=0.169 Sum_probs=72.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
..+|||||||+|.++..++++ ++.++.+ |+ +.+++.+.+. ..+.+..+|... |++.+ |+|++..++|+|.
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~ 273 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNF---DL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWS 273 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCeEEEe---cC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCC
Confidence 458999999999999999875 3333333 33 3344444332 468888888876 77754 9999999999998
Q ss_pred cCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 297 QYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 297 ~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++. ..+|+++.++|||||+|+|...
T Consensus 274 d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 274 DQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 643 6899999999999999999864
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=105.54 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=71.9
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CCCC-----CCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LPYP-----SRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LPfp-----d~sFDlV 286 (544)
.+|||||||+|..+..|++. .++++|+++.++..+...+. ..+. .+.+..+|+.. ++.. .++||+|
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN-FAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH-HcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 38999999999999999873 47888888877655554433 3343 37888888643 3322 2789999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++....+++.. ...++.++ ++|||||.|++...
T Consensus 139 ~~d~~~~~~~~-~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 139 FLDHWKDRYLP-DTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EECSCGGGHHH-HHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEcCCcccchH-HHHHHHhc-cccCCCeEEEEeCC
Confidence 99876655442 34667777 99999999998754
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.3e-09 Score=108.07 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=92.8
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc-----CCCeEEEEeccccCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMASIRLPYP 279 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~er-----gv~~~~~v~d~~~LPfp 279 (544)
.+.+.+.... .++|||||||+|.++..++++ ++.++.+ |+ +..++.++++ ...+.+..+|....|.+
T Consensus 170 ~~~~~~~~~~--~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~---dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~ 243 (353)
T 4a6d_A 170 SVLTAFDLSV--FPLMCDLGGGAGALAKECMSLYPGCKITVF---DI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP 243 (353)
T ss_dssp HHHHSSCGGG--CSEEEEETCTTSHHHHHHHHHCSSCEEEEE---EC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC
T ss_pred HHHHhcCccc--CCeEEeeCCCCCHHHHHHHHhCCCceeEec---cC-HHHHHHHHHhhhhcccCceeeecCccccCCCC
Confidence 3444443333 448999999999999999986 4443333 22 2334444332 23588888887766655
Q ss_pred CCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhh---------HhhhhhHHHH
Q 009069 280 SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDL---------KSEQNGIETI 349 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L---------~~~~~~ie~l 349 (544)
.+|+|++..++|+|.++. ..+|+++.++|+|||.++|.+.-..-. ....+....-++ +...++++++
T Consensus 244 --~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~-~~~~~~~~~~dl~ml~~~~g~ert~~e~~~l 320 (353)
T 4a6d_A 244 --EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED-RRGPLLTQLYSLNMLVQTEGQERTPTHYHML 320 (353)
T ss_dssp --CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTT-SCCCHHHHHHHHHHHHSSSCCCCCHHHHHHH
T ss_pred --CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCC-CCCCHHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 479999999999998744 688999999999999999986421100 000000000011 0123567788
Q ss_pred HHhhcceeeee
Q 009069 350 ARSLCWKKLIQ 360 (544)
Q Consensus 350 a~~l~w~~v~~ 360 (544)
+++.||+.+..
T Consensus 321 l~~AGf~~v~v 331 (353)
T 4a6d_A 321 LSSAGFRDFQF 331 (353)
T ss_dssp HHHHTCEEEEE
T ss_pred HHHCCCceEEE
Confidence 99999987753
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=105.93 Aligned_cols=107 Identities=11% Similarity=0.115 Sum_probs=77.7
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-C
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-Y 278 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L-P-f 278 (544)
.+..++....+ .+|||||||+|.++..|++. .++++|+++.++..++..+ .+.++ .+.+..+|+... + .
T Consensus 62 ~l~~~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~ 138 (232)
T 3ntv_A 62 LIKQLIRMNNV--KNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNL-ATYHFENQVRIIEGNALEQFENV 138 (232)
T ss_dssp HHHHHHHHHTC--CEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHH-HHTTCTTTEEEEESCGGGCHHHH
T ss_pred HHHHHHhhcCC--CEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECCHHHHHHhh
Confidence 34444444443 38999999999999999883 4788898887775555433 33444 588888887553 3 3
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+++||+|++... ......++.++.++|||||+|++..
T Consensus 139 ~~~~fD~V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 139 NDKVYDMIFIDAA----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp TTSCEEEEEEETT----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ccCCccEEEEcCc----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 4789999997542 3335789999999999999998864
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-09 Score=102.33 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC---CCCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL---PYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L---Pfpd~sFDlV~~~~ 290 (544)
+.+|||+|||+|.++..|+++ .++++|+++.++..+. +.+... .++.+..+|.... ...+++||+|++..
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~-~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHH-HHHhcc-CCCEEEEccCCCcchhhcccCCceEEEECC
Confidence 448999999999999998864 4788888776554333 333322 4678888887652 12245899999865
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
. .......++.++.++|||||.|++..
T Consensus 152 ~---~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 152 A---QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp C---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C---CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 22212456999999999999999983
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.7e-09 Score=104.34 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=78.4
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeC-CccchHHHHHHHH----HHcCC------
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSF-APRDTHEAQVQFA----LERGV------ 264 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdi-sp~dls~a~v~~A----~ergv------ 264 (544)
.+.....+.+.+...... +.+|||||||+|.++..+++. .|+++|+ ++.++..++.+.. ...++
T Consensus 62 ~~~~~l~~~l~~~~~~~~--~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~ 139 (281)
T 3bzb_A 62 SGARALADTLCWQPELIA--GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRA 139 (281)
T ss_dssp CHHHHHHHHHHHCGGGTT--TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------C
T ss_pred cHHHHHHHHHHhcchhcC--CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCC
Confidence 344445555555443333 348999999999999988876 4788888 7766655544331 22222
Q ss_pred CeEEEEecccc----CC--CCCCCeeEEEecccccccccChHHHHHHHHHccc---C--CcEEEEEeC
Q 009069 265 PALIGVMASIR----LP--YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLR---P--GGYWILSGP 321 (544)
Q Consensus 265 ~~~~~v~d~~~----LP--fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLK---P--GG~Lvis~p 321 (544)
.+.+...+... +. +++++||+|+++.+++|.. +...++.++.++|+ | ||.+++...
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~-~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 140 SPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ-AHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp CCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG-GHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred CeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH-HHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 34454433222 11 0357899999999886644 46899999999999 9 999887644
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-09 Score=104.95 Aligned_cols=102 Identities=20% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc-------C-CCeEEEEecccc-CC--CCCCCe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER-------G-VPALIGVMASIR-LP--YPSRAF 283 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~er-------g-v~~~~~v~d~~~-LP--fpd~sF 283 (544)
+.+|||||||+|.++..|++. .++++|+++.++..+.......+ + .++.+..+|+.. ++ +++++|
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 348999999999999999875 48889998877755554433320 3 367888888765 66 778899
Q ss_pred eEEEecccccccccCh--------HHHHHHHHHcccCCcEEEEEeC
Q 009069 284 DMAHCSRCLIPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|.|+....- +|.... ..++.++.++|||||.|++...
T Consensus 130 d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 130 SKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred CEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 999854321 221100 4899999999999999999754
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-09 Score=103.13 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=71.1
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC-CC-C----CCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-PY-P----SRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L-Pf-p----d~sFDlV 286 (544)
.+|||||||+|.++..|++. .++++|+++.++..+...+. ..+. .+.+.++|.... +. . .++||+|
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWE-KAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHH-HCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 38999999999999999875 47888888876655554333 3444 378888876432 21 1 1789999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++... ..+...++.++.++|||||+|++...
T Consensus 145 ~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 145 YIDAD----KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 96542 33357899999999999999999754
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-09 Score=102.53 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEecc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV---PALIGVMAS 273 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~ 273 (544)
..++..+....+.+ ...+|||||||+|..+..|++. .++++|+++.++..++..+. +.+. .+.+..+|+
T Consensus 42 ~~~l~~l~~~~~~~--~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~~i~~~~gda 118 (221)
T 3dr5_A 42 GQLLTTLAATTNGN--GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFR-EAGYSPSRVRFLLSRP 118 (221)
T ss_dssp HHHHHHHHHHSCCT--TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHH-HTTCCGGGEEEECSCH
T ss_pred HHHHHHHHHhhCCC--CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCcCcEEEEEcCH
Confidence 34444444433222 2338999999999999999873 47888888877755554433 3444 378888776
Q ss_pred ccC-C-CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 274 IRL-P-YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 274 ~~L-P-fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
... + +++++||+|++.... .+...++.++.++|||||+|++..
T Consensus 119 ~~~l~~~~~~~fD~V~~d~~~----~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 119 LDVMSRLANDSYQLVFGQVSP----MDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp HHHGGGSCTTCEEEEEECCCT----TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred HHHHHHhcCCCcCeEEEcCcH----HHHHHHHHHHHHHcCCCcEEEEeC
Confidence 443 2 346899999986532 234679999999999999999964
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.8e-09 Score=103.54 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=75.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||+|||+|.++..++++ .++++|+++.++..+..+ +..+++ ++.+..+|+...+. +++||+|++....
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n-~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCEN-IKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH- 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHH-HHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS-
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc-
Confidence 348999999999999999875 488899988777655543 334454 57788888877744 6789999987643
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....++.++.++|||||.++++..
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 356799999999999999999864
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-09 Score=106.57 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=76.6
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH---cCC--CeEEEEeccccC--
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE---RGV--PALIGVMASIRL-- 276 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e---rgv--~~~~~v~d~~~L-- 276 (544)
|..++.... +.+|||+|||+|.++..|+++ .++++|+++.++..+..... . .+. .+.+..+|....
T Consensus 28 L~~~~~~~~--~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~-~~~~~~l~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 28 LASLVADDR--ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLE-LPDNAAFSARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHTCCCCS--CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTT-SGGGTTTGGGEEEEECCTTCCHH
T ss_pred HHHHhcccC--CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH-hhhhCCCcceEEEEeCCHHHHhh
Confidence 344444333 448999999999999999876 46777886655544333222 2 333 278888887766
Q ss_pred -----CCCCCCeeEEEeccccccc-----------------ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 -----PYPSRAFDMAHCSRCLIPW-----------------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 -----Pfpd~sFDlV~~~~~l~h~-----------------~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++++||+|+++..+... ......++.++.++|||||.|++..+
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 3667899999998544221 11246889999999999999999865
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.93 E-value=6.6e-09 Score=106.42 Aligned_cols=111 Identities=18% Similarity=0.171 Sum_probs=78.2
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSR 281 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~ 281 (544)
+..++....+. +|||+|||+|..+..|++. .++++|+++..+..+..+.. ..++ ++.+...|...++..++
T Consensus 110 ~~~~l~~~~g~--~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~-~~g~~~v~~~~~D~~~~~~~~~ 186 (315)
T 1ixk_A 110 PPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLS-RLGVLNVILFHSSSLHIGELNV 186 (315)
T ss_dssp HHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH-HHTCCSEEEESSCGGGGGGGCC
T ss_pred HHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH-HhCCCeEEEEECChhhcccccc
Confidence 34455545444 8999999999999999863 38888988876655544433 3354 67888888887765567
Q ss_pred CeeEEEecc------ccccccc-----C----------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSR------CLIPWGQ-----Y----------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~------~l~h~~~-----d----------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|++.. .+.+.++ . ...+|.++.++|||||.|++++.
T Consensus 187 ~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 187 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 899999832 2221111 0 14889999999999999999864
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-09 Score=104.92 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=77.7
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPY 278 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPf 278 (544)
..+.+.+...++. +|||+|||+|.++..++++ .++++|+++..+..+.... ...++ .+.+...|.... +
T Consensus 102 ~~i~~~~~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~-~ 177 (277)
T 1o54_A 102 SFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL-TKWGLIERVTIKVRDISEG-F 177 (277)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHH-HHTTCGGGEEEECCCGGGC-C
T ss_pred HHHHHHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH-HHcCCCCCEEEEECCHHHc-c
Confidence 3455555555544 8999999999999998865 3677888776664444332 23343 577777777665 6
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++||+|++.. .++..++.++.++|+|||.|++..+
T Consensus 178 ~~~~~D~V~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 178 DEKDVDALFLDV------PDPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp SCCSEEEEEECC------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred cCCccCEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 778899999842 2456899999999999999999976
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=98.12 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=70.8
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-CC---CCCeeEEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-YP---SRAFDMAH 287 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L-P-fp---d~sFDlV~ 287 (544)
.+|||||||+|.++..|++. .++++|+++..+..++..+. ..+. .+.+..+|.... + ++ .++||+|+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIE-RANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 38999999999999999876 47788887776655544333 3344 378888876442 1 11 26799999
Q ss_pred ecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.... .....++.++.++|||||.+++...
T Consensus 139 ~d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 139 IDADK----QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp ECSCG----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EcCCc----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 86542 2246899999999999999988754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.3e-09 Score=101.45 Aligned_cols=107 Identities=17% Similarity=0.086 Sum_probs=77.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSR 281 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~ 281 (544)
..+.+.+....+. +|||+|||+|.++..++++ .++++|+++..+..+....+ ..++ .+.+...|.....++++
T Consensus 81 ~~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 81 FYIALKLNLNKEK--RVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-KFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHH-HTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHHhcCCCCCC--EEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCCcEEEEEcChhhcccCCC
Confidence 3455555554444 8999999999999999875 57778887766654443332 3343 57777777766443677
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|++.. .++..++.++.++|||||.+++..+
T Consensus 158 ~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 158 IFHAAFVDV------REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp CBSEEEECS------SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred cccEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 899999832 2456899999999999999999976
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.3e-10 Score=109.70 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=66.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccC---CCC---CCCeeEE
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRL---PYP---SRAFDMA 286 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~L---Pfp---d~sFDlV 286 (544)
+.+|||+|||+|.++..|+++ .++++|+++.++..+..... ..++. +.+..+|.... +++ +++||+|
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE-QNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH-HcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 458999999999998888764 58889998877765554433 34443 78888886542 444 3689999
Q ss_pred Eeccccccccc-------------Ch-HHHHHHHHHcccCCcEEEEE
Q 009069 287 HCSRCLIPWGQ-------------YD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 287 ~~~~~l~h~~~-------------d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
+|+..+++... .+ ..++.++.|+|||||.+.+.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 99876654331 01 24567888899998887664
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5e-09 Score=106.75 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH----HcCCCeEEEEeccccCCC--CCCCeeEEE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIRLPY--PSRAFDMAH 287 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~----ergv~~~~~v~d~~~LPf--pd~sFDlV~ 287 (544)
.+.+|||||||+|.++..+++. .++++|+++..+..+...+.. .....+.+..+|....+. ++++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 3458999999999999999875 478888877666544433311 012457888888766553 478999999
Q ss_pred ecccccccccCh---HHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.......+... ..+++++.|+|||||.|++...
T Consensus 175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 976553322211 5899999999999999999864
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-09 Score=116.51 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=79.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPY 278 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPf 278 (544)
+.+.+.+.+.... +.+|||||||+|.++..+++. .|+++|+++ ++..+ .+.+...++ .+.+..+|...+++
T Consensus 146 ~~~~il~~l~~~~--~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A-~~~~~~~gl~~~v~~~~~d~~~~~~ 221 (480)
T 3b3j_A 146 YQRAILQNHTDFK--DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHA-EVLVKSNNLTDRIVVIPGKVEEVSL 221 (480)
T ss_dssp HHHHHHHTGGGTT--TCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHH-HHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred HHHHHHHhhhhcC--CCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHH-HHHHHHcCCCCcEEEEECchhhCcc
Confidence 3444555444333 348999999999999999876 467888865 44333 333444454 48888888888776
Q ss_pred CCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 279 PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
+ ++||+|++...++|+..+. ...+.++.++|||||++++.
T Consensus 222 ~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 222 P-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp S-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred C-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5 5899999988776765422 56777899999999999864
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-09 Score=100.98 Aligned_cols=95 Identities=11% Similarity=0.105 Sum_probs=71.1
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CCCCCCCeeEEEeccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LPYPSRAFDMAHCSRC 291 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LPfpd~sFDlV~~~~~ 291 (544)
.+|||||||+|..+..|++. .++++|+++.++..+...+. ..+. .+.+..+|... ++..++ ||+|++...
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~ 135 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLH-DNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD 135 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence 48999999999999999865 57888888776655544433 2333 47788887654 355556 999998642
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..+...++.++.++|||||+|++..
T Consensus 136 ----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 136 ----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp ----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred ----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2345789999999999999999864
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6e-10 Score=123.09 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=76.0
Q ss_pred CCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccC--CCCCCCeeEEEecccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRL--PYPSRAFDMAHCSRCL 292 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~L--Pfpd~sFDlV~~~~~l 292 (544)
.+.+|||||||.|.++..|+++| |+++|+++.++..++. .|.+.+ .++.+.+.+++.+ ++.+++||+|+|..++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRA-LAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHH-HHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 34589999999999999999986 6667776666654443 344555 6789999998887 5678899999999999
Q ss_pred cccccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 293 IPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 293 ~h~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
+|..+.. ...+..+.+.|+++|..++.
T Consensus 145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 145 HHIVHLHGIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred hcCCCHHHHHHHHHHHHHhccccceeeE
Confidence 9987522 34455677778888766654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.8e-09 Score=103.34 Aligned_cols=97 Identities=9% Similarity=0.049 Sum_probs=73.6
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC-CCC-----CCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-PYP-----SRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L-Pfp-----d~sFDlV 286 (544)
.+|||||||+|..+..|++. .++++|+++.++..++..+. ..++ .+.+..+|+... +.. +++||+|
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWR-EAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHH-HTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 38999999999999999873 58999999988765554443 3444 588888887543 221 5789999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++... ..+...++.++.++|||||+|++...
T Consensus 141 ~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 141 FIDAD----KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEESC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEcCC----hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 98653 23346789999999999999999743
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-09 Score=106.86 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=71.1
Q ss_pred CEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC---CCCC-CCeeEEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL---PYPS-RAFDMAH 287 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L---Pfpd-~sFDlV~ 287 (544)
.+|||||||+|..+..|++. .|+++|+++.++..+. ....++.+.++|.... ++.+ .+||+|+
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCEEE
Confidence 48999999999999988763 4888999887764333 2234688888888763 5444 4799999
Q ss_pred ecccccccccChHHHHHHHHH-cccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQYDGLYLIEVDR-VLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~d~~~~L~Ei~R-VLKPGG~Lvis~p 321 (544)
+... | .+...+|.++.| +|||||+|++...
T Consensus 158 ~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 158 IDNA--H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EESS--C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred ECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 8654 3 245789999998 9999999999753
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-08 Score=104.75 Aligned_cols=130 Identities=16% Similarity=0.076 Sum_probs=89.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP 277 (544)
....+..+. ... +.+|||+|||+|.++..++.. .++++|+++.++..+..+ +...++ .+.+.++|...++
T Consensus 206 la~~l~~~~-~~~--~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n-~~~~gl~~~i~~~~~D~~~~~ 281 (373)
T 3tm4_A 206 IANAMIELA-ELD--GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMN-ALAAGVLDKIKFIQGDATQLS 281 (373)
T ss_dssp HHHHHHHHH-TCC--SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHH-HHHTTCGGGCEEEECCGGGGG
T ss_pred HHHHHHHhh-cCC--CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhhCC
Confidence 334455554 333 348999999999999999875 578999988877655544 334565 6889999999999
Q ss_pred CCCCCeeEEEecccccccccC------h-HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHH
Q 009069 278 YPSRAFDMAHCSRCLIPWGQY------D-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIA 350 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d------~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la 350 (544)
+++++||+|+++..+...... . ..++.++.|+| ||.+++..+ . ...++..+
T Consensus 282 ~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------~-------~~~~~~~~ 339 (373)
T 3tm4_A 282 QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------E-------KKAIEEAI 339 (373)
T ss_dssp GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------C-------HHHHHHHH
T ss_pred cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------C-------HHHHHHHH
Confidence 888999999998755332211 1 56888999999 555555433 0 12345567
Q ss_pred Hhhcceeee
Q 009069 351 RSLCWKKLI 359 (544)
Q Consensus 351 ~~l~w~~v~ 359 (544)
++.+|+...
T Consensus 340 ~~~G~~~~~ 348 (373)
T 3tm4_A 340 AENGFEIIH 348 (373)
T ss_dssp HHTTEEEEE
T ss_pred HHcCCEEEE
Confidence 778887665
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-09 Score=97.30 Aligned_cols=92 Identities=15% Similarity=0.111 Sum_probs=64.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-------------CcEEEeCCccchHHHHHHHHHHcCCCeEEE-EeccccCC-------
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-------------NILAVSFAPRDTHEAQVQFALERGVPALIG-VMASIRLP------- 277 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------------~V~~vdisp~dls~a~v~~A~ergv~~~~~-v~d~~~LP------- 277 (544)
+.+|||+|||+|.++..|+++ .++++|+++... ...+.+. .+|....+
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~~~ 91 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRILE 91 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHHHH
Confidence 348999999999999999875 267888877321 1235566 66654432
Q ss_pred -CCCCCeeEEEecccccc---cccCh-------HHHHHHHHHcccCCcEEEEEeC
Q 009069 278 -YPSRAFDMAHCSRCLIP---WGQYD-------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 -fpd~sFDlV~~~~~l~h---~~~d~-------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++++||+|+|..+++. +..+. ..++.++.++|||||.|++...
T Consensus 92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 34568999999765421 11112 3789999999999999999864
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.89 E-value=9.7e-09 Score=106.37 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEeccccC--CCCCCCeeEEE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRL--PYPSRAFDMAH 287 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e----rgv~~~~~v~d~~~L--Pfpd~sFDlV~ 287 (544)
...+|||||||+|.++..|+++ .++++|+++.++..++..+... ....+.+.++|.... .+++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 3458999999999999999876 4788898887665555443321 123678888886543 23467899999
Q ss_pred ecccccccc--cC--hHHHHHHHHHcccCCcEEEEEe
Q 009069 288 CSRCLIPWG--QY--DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 288 ~~~~l~h~~--~d--~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.... ++. .. ...++.++.|+|||||.|++..
T Consensus 200 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 200 VDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp ECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 86532 222 11 2689999999999999999974
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-09 Score=102.56 Aligned_cols=108 Identities=13% Similarity=0.193 Sum_probs=76.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC-CC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-PY 278 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L-Pf 278 (544)
..+..++....+. +|||+|||+|.++..|++. .++++|+++..+..+...+. ..+. .+.+..+|.... +.
T Consensus 44 ~~l~~~~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~ 120 (233)
T 2gpy_A 44 ESLLHLLKMAAPA--RILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVK-ALGLESRIELLFGDALQLGEK 120 (233)
T ss_dssp HHHHHHHHHHCCS--EEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHH-HTTCTTTEEEECSCGGGSHHH
T ss_pred HHHHHHHhccCCC--EEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEECCHHHHHHh
Confidence 3444444444443 8999999999999999875 47788887766654443332 3343 477887776653 43
Q ss_pred C--CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 279 P--SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 279 p--d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
. +++||+|++.... .+...++.++.++|||||.+++..
T Consensus 121 ~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 121 LELYPLFDVLFIDAAK----GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp HTTSCCEEEEEEEGGG----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred cccCCCccEEEECCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 3 5789999987654 245789999999999999999974
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-09 Score=110.31 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
..+|||||||+|.++..++++ + ++++|+ + .+++.+.+. ..+.+..+|... ++++ ||+|++..++||
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~ 258 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P-----QVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILHN 258 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGGG
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H-----HHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhcc
Confidence 358999999999999999875 3 555555 3 444444332 247888888755 5553 999999999999
Q ss_pred cccCh-HHHHHHHHHcccC---CcEEEEEeC
Q 009069 295 WGQYD-GLYLIEVDRVLRP---GGYWILSGP 321 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKP---GG~Lvis~p 321 (544)
|.+.. ..+|+++.|+||| ||+|++...
T Consensus 259 ~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 259 WTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 97632 3999999999999 999999864
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.4e-09 Score=107.30 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=75.3
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-----------CCCeEE
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER-----------GVPALI 268 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~er-----------gv~~~~ 268 (544)
...+.+.+.+..+. +|||+|||+|.++..|++. .++++|+++..+..+........ ..++.+
T Consensus 94 ~~~~l~~l~~~~g~--~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~ 171 (336)
T 2b25_A 94 INMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 171 (336)
T ss_dssp HHHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence 34455555555544 8999999999999998874 37888888876665554443211 135788
Q ss_pred EEeccccC--CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 269 GVMASIRL--PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 269 ~v~d~~~L--Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..+|...+ ++++++||+|++... .+..++.++.++|||||.|++..+
T Consensus 172 ~~~d~~~~~~~~~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 172 IHKDISGATEDIKSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp EESCTTCCC-------EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred EECChHHcccccCCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 88887776 566778999998542 234589999999999999998865
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-09 Score=107.41 Aligned_cols=94 Identities=18% Similarity=0.155 Sum_probs=68.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcC-------CCeEEE--EeccccCCCCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG-------VPALIG--VMASIRLPYPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~erg-------v~~~~~--v~d~~~LPfpd~sFDlV~~ 288 (544)
+.+|||+|||+|.++..++++ .|+++|+++ +... +.++. .++.+. ++|+..+| +++||+|+|
T Consensus 83 g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~-----a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTS-----GHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC 154 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCT-----TSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred CCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhh-----hhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence 458999999999999999886 689999988 4311 11111 146777 77888776 679999999
Q ss_pred ccccccccc---ChH---HHHHHHHHcccCCc--EEEEEeC
Q 009069 289 SRCLIPWGQ---YDG---LYLIEVDRVLRPGG--YWILSGP 321 (544)
Q Consensus 289 ~~~l~h~~~---d~~---~~L~Ei~RVLKPGG--~Lvis~p 321 (544)
..+ +.... +.. .+|.++.|+||||| .|++...
T Consensus 155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 876 22211 011 37899999999999 9999754
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=105.80 Aligned_cols=114 Identities=9% Similarity=-0.004 Sum_probs=77.0
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC---CeEEEEeccccCCC--
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRLPY-- 278 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~LPf-- 278 (544)
+.+.+.+.. .+.+.+|||+|||+|.++..++..+ |+++|+++.++..+..+... .++ .+.+..+|+..+..
T Consensus 142 ~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~-~gl~~~~v~~i~~D~~~~l~~~ 219 (332)
T 2igt_A 142 EWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQRE 219 (332)
T ss_dssp HHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH-cCCCccceEEEECcHHHHHHHH
Confidence 344555431 1233489999999999999999875 77788877766555544433 344 27888888655431
Q ss_pred --CCCCeeEEEeccccc---------ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 --PSRAFDMAHCSRCLI---------PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 --pd~sFDlV~~~~~l~---------h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+++||+|++..-.. ++..+...++.++.++|||||+|++...
T Consensus 220 ~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 220 ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred HhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 156899999954321 1222236889999999999999888754
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.86 E-value=8e-09 Score=98.20 Aligned_cols=111 Identities=13% Similarity=0.029 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
..+...+.+|.+.+.+. ..+.+|||+|||+|.++..++++ .|+++|+++... ...+.+.++|....
T Consensus 7 ~Ra~~KL~ei~~~~~~~-~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-----------~~~v~~~~~D~~~~ 74 (191)
T 3dou_A 7 SRAAFKLEFLLDRYRVV-RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-----------IAGVRFIRCDIFKE 74 (191)
T ss_dssp SHHHHHHHHHHHHHCCS-CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-----------CTTCEEEECCTTSS
T ss_pred CcHHHHHHHHHHHcCCC-CCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-----------CCCeEEEEccccCH
Confidence 33444444555544422 12448999999999999999987 478888877421 13577888887765
Q ss_pred CCC-----------CCCeeEEEeccccccc----ccC------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYP-----------SRAFDMAHCSRCLIPW----GQY------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfp-----------d~sFDlV~~~~~l~h~----~~d------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.. .++||+|+|....... .+. ...++.++.++|||||.|++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 75 TIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp SHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 421 1489999996543110 110 14678899999999999998754
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.9e-08 Score=94.86 Aligned_cols=92 Identities=11% Similarity=-0.002 Sum_probs=64.3
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
.+.+|||+|||+|.++..+++. .++++|+++.++ +.+.++..++.+..+|...++ ++||+|+++..+++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~-----~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 122 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-----ETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGS 122 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-----HHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC--
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHH-----HHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchh
Confidence 3458999999999999999886 367777765444 444444336788888888865 68999999999877
Q ss_pred cccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 295 WGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
+.... ..++.++.++| |+.+++.
T Consensus 123 ~~~~~~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 123 VVKHSDRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp -----CHHHHHHHHHHE--EEEEEEE
T ss_pred ccCchhHHHHHHHHHhc--CcEEEEE
Confidence 76432 57899999999 5533333
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.4e-09 Score=104.83 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=73.3
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHH-H-HHcCCCeEEE--EeccccCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQF-A-LERGVPALIG--VMASIRLPY 278 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~-A-~ergv~~~~~--v~d~~~LPf 278 (544)
.+..+.+...+.+ +.+|||||||+|.++..++++ .|+++|+++ +...+..+. . ...+.++.+. ++|+..++
T Consensus 62 KL~~i~~~~~~~~--g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~- 137 (265)
T 2oxt_A 62 KLAWMEERGYVEL--TGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP- 137 (265)
T ss_dssp HHHHHHHHTSCCC--CEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-
T ss_pred HHHHHHHcCCCCC--CCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC-
Confidence 3344444422333 458999999999999999886 689999987 421110000 0 0001146777 77887765
Q ss_pred CCCCeeEEEeccccccccc---ChH---HHHHHHHHcccCCc--EEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQ---YDG---LYLIEVDRVLRPGG--YWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~---d~~---~~L~Ei~RVLKPGG--~Lvis~p 321 (544)
+++||+|+|..+ ++... +.. .+|.++.|+||||| .|++...
T Consensus 138 -~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 138 -VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred -CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 679999999776 23221 111 37899999999999 9999754
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-08 Score=96.88 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=74.0
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CC-
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP- 277 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LP- 277 (544)
.+..++....+. +|||||||+|.++..|++. .++++|+++..+..++..+. ..+. .+.+..+|... ++
T Consensus 51 ~l~~l~~~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~v~~~~~d~~~~~~~ 127 (239)
T 2hnk_A 51 FLNILTKISGAK--RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWK-ENGLENKIFLKLGSALETLQV 127 (239)
T ss_dssp HHHHHHHHHTCS--EEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH-HTTCGGGEEEEESCHHHHHHH
T ss_pred HHHHHHHhhCcC--EEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCEEEEECCHHHHHHH
Confidence 344444444433 8999999999999999865 47888887766654443333 3343 26777777543 12
Q ss_pred -------------CCC--CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 278 -------------YPS--RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 -------------fpd--~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|++ ++||+|++.... .+...++.++.++|||||.+++..
T Consensus 128 ~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 128 LIDSKSAPSWASDFAFGPSSIDLFFLDADK----ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp HHHCSSCCGGGTTTCCSTTCEEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHhhcccccccccccCCCCCcCEEEEeCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 789999987543 223688999999999999999975
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-09 Score=109.89 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=69.7
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC--CCCCCCeeEEEeccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--PYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L--Pfpd~sFDlV~~~~~l~ 293 (544)
.+|||||||+|.++.+++++ .++++|+++..+..++..+.......+.+.++|.... .+++++||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 38999999999999999883 4677777665443333222111123578888886553 34578999999864332
Q ss_pred ccccC---hHHHHHHHHHcccCCcEEEEEe
Q 009069 294 PWGQY---DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 294 h~~~d---~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..... ...+++++.|+|||||.|++..
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 11111 1689999999999999999875
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.7e-08 Score=100.49 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=80.8
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccc
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASI 274 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~ 274 (544)
..+..++.+.+.+....+ .+|||+|||+|.++..|+.. .++++|+++.++..+..+ +...++. +.+..+|..
T Consensus 107 ~te~lv~~~l~~~~~~~~--~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n-~~~~~l~~~v~~~~~D~~ 183 (284)
T 1nv8_A 107 ETEELVELALELIRKYGI--KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKN-AERHGVSDRFFVRKGEFL 183 (284)
T ss_dssp THHHHHHHHHHHHHHHTC--CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHH-HHHTTCTTSEEEEESSTT
T ss_pred hHHHHHHHHHHHhcccCC--CEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECcch
Confidence 345566666666643333 38999999999999999875 578888888777555443 3344553 788888876
Q ss_pred cCCCCCCCe---eEEEecccccccc------------------cChHHHHHHHH-HcccCCcEEEEEeC
Q 009069 275 RLPYPSRAF---DMAHCSRCLIPWG------------------QYDGLYLIEVD-RVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LPfpd~sF---DlV~~~~~l~h~~------------------~d~~~~L~Ei~-RVLKPGG~Lvis~p 321 (544)
. +++ ++| |+|+++.-++... .+...+++++. +.|+|||.|++...
T Consensus 184 ~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 184 E-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp G-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred h-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 5 222 478 9999974332111 11137899999 99999999999855
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=102.70 Aligned_cols=109 Identities=14% Similarity=0.029 Sum_probs=77.7
Q ss_pred HHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCC----C
Q 009069 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPY----P 279 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPf----p 279 (544)
.++....+ .+|||+|||+|..+..|++. .++++|+++..+..+..+ +...+. ++.+...|...++. .
T Consensus 77 ~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~-~~~~g~~~v~~~~~D~~~~~~~~~~~ 153 (274)
T 3ajd_A 77 IVLNPRED--DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSN-INRMGVLNTIIINADMRKYKDYLLKN 153 (274)
T ss_dssp HHHCCCTT--CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEESCHHHHHHHHHHT
T ss_pred HHhCCCCc--CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHH-HHHhCCCcEEEEeCChHhcchhhhhc
Confidence 34444444 48999999999999998862 488899987766544433 334454 67888888777654 3
Q ss_pred CCCeeEEEecccccc-----------------cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIP-----------------WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h-----------------~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||+|++...... +......++.++.++|||||.|++++.
T Consensus 154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 678999998521111 123347899999999999999999875
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.2e-09 Score=106.15 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH-Hc----CCCeEEEEecccc-CCCCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL-ER----GVPALIGVMASIR-LPYPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~-er----gv~~~~~v~d~~~-LPfpd~sFDlV~~ 288 (544)
..+|||||||+|.++..++++ .++++|+++..+..++..+.. .. ...+.+..+|... ++..+++||+|++
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 458999999999999999876 478889988766555544332 11 2467888888655 4445788999999
Q ss_pred ccccccc---cc--C--hHHHHHHHHHcccCCcEEEEEe
Q 009069 289 SRCLIPW---GQ--Y--DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 289 ~~~l~h~---~~--d--~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.... ++ .. . ...+++++.++|||||.|++..
T Consensus 158 d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 158 DLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp ECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 7654 44 11 1 2689999999999999999974
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.5e-08 Score=99.88 Aligned_cols=99 Identities=15% Similarity=-0.042 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc-CCC-CCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR-LPY-PSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~-LPf-pd~sFDlV~~~~~ 291 (544)
+.+|||+| |+|.++..++.. .++++|+++.++..+..+ +.+.++ ++.+..+|... +|. .+++||+|+++..
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~-~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKA-ANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHH-HHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 45899999 999999988765 478888888777555443 333455 68888888877 664 4578999999876
Q ss_pred ccccccChHHHHHHHHHcccCCcE-EEEEeC
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGY-WILSGP 321 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~-Lvis~p 321 (544)
++... ...++.++.++|||||. ++++..
T Consensus 251 ~~~~~--~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 251 ETLEA--IRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp SSHHH--HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CchHH--HHHHHHHHHHHcccCCeEEEEEEe
Confidence 64332 47899999999999994 466643
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-08 Score=104.53 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=72.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||||||+|.++...++.| |+++|.++ +. ..+.+.+..++. .+.+..++.+.+.++ +.||+|+|...-.
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~-~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IW-QQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY 160 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-TH-HHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HH-HHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence 3489999999999988888764 88999875 44 344456666665 478888888888776 6799999843222
Q ss_pred ccc--cChHHHHHHHHHcccCCcEEEEE
Q 009069 294 PWG--QYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 294 h~~--~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
.+. .....++....|.|||||.++-.
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccchhhhHHHHHHhhCCCCceECCc
Confidence 222 22378888899999999998764
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-08 Score=102.32 Aligned_cols=102 Identities=9% Similarity=0.098 Sum_probs=74.1
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIR-LPYPSRAFDMAHC 288 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e----rgv~~~~~v~d~~~-LPfpd~sFDlV~~ 288 (544)
.+.+|||||||+|.++..++++ .++++|+++..+..++..+..- ....+.+..+|... ++..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 3568999999999999999876 4788888876665544433221 12357888888654 4445678999999
Q ss_pred cccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 289 SRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 289 ~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.... ++... ...+++++.++|||||.|++..
T Consensus 155 d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 6543 33221 1589999999999999999985
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.9e-09 Score=106.60 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCC--cHHHHHHhh-----CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGV--ASWGAYLMS-----RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASI 274 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGt--G~~a~~La~-----~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~ 274 (544)
..++.+..+.+.... ..+.|||||||+ +.....+++ ..|+++|.++.++..++..+.......+.+..+|..
T Consensus 63 r~fl~rav~~l~~~~-g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~ 141 (277)
T 3giw_A 63 RDWMNRAVAHLAKEA-GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADML 141 (277)
T ss_dssp HHHHHHHHHHHHHTS-CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTT
T ss_pred HHHHHHHHHHhcccc-CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEeccc
Confidence 344455555554222 245899999997 322333322 368888998877765544332111124788888877
Q ss_pred cCC----CC--CCCee-----EEEecccccccccC--hHHHHHHHHHcccCCcEEEEEeC
Q 009069 275 RLP----YP--SRAFD-----MAHCSRCLIPWGQY--DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LP----fp--d~sFD-----lV~~~~~l~h~~~d--~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.++ .+ .++|| .|+++.+|||+.+. +..++.++.++|+|||+|+++..
T Consensus 142 ~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 142 DPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp CHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred ChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 642 11 34565 58888888666653 36899999999999999999853
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.4e-09 Score=107.56 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-CcEEEeC----CccchHHHHHHHHHHcC-CCeEEEEe-ccccCCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-NILAVSF----APRDTHEAQVQFALERG-VPALIGVM-ASIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~V~~vdi----sp~dls~a~v~~A~erg-v~~~~~v~-d~~~LPfpd~sFDlV~~~~~ 291 (544)
+.+|||||||+|.++..++++ .|+++|+ ++.++.... ....+ ..+.+..+ |...++ .++||+|+|..+
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~ 157 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIG 157 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccCC--cCCCCEEEECCc
Confidence 458999999999999999987 5888888 443221000 00111 23666666 666554 568999999776
Q ss_pred cc--ccccChH---HHHHHHHHcccCCcEEEEEeC
Q 009069 292 LI--PWGQYDG---LYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~--h~~~d~~---~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++ ++..+.. .+|.++.++|||||.|++...
T Consensus 158 ~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 158 ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred cccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 53 2211122 578999999999999999754
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=6.1e-08 Score=93.06 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=71.1
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-CC--C--CCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-YP--S--RAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L-P-fp--d--~sFDlV 286 (544)
.+|||||||+|.++..+++. .++++|+++..+..+...+. ..+. .+.+..+|.... + +. . ++||+|
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWR-QAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 48999999999999999874 47889998877755554333 3443 577887775432 1 11 1 689999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++... ......++.++.++|||||.+++...
T Consensus 150 ~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 150 VVDAD----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EECSC----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 98653 22347899999999999999999753
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-07 Score=87.90 Aligned_cols=96 Identities=7% Similarity=-0.015 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
.+.+|||+|||+|.++..+++. .++++|+++.++..+.... ...++.+.+..+|...++ ++||+|+++..++.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENL-GEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHT-GGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHH-HHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence 3458999999999999999886 3788888776654444322 233447888888888865 48999999988766
Q ss_pred cccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 295 WGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
+.... ..++.++.++| ||.+++.
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEEE
Confidence 55322 68899999998 6655444
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=103.77 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIR-LPYPSRAFDMAHC 288 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e----rgv~~~~~v~d~~~-LPfpd~sFDlV~~ 288 (544)
...+|||||||+|.++..++++ .++++|+++..+..++..+... ....+.+..+|... ++..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 3458999999999999999876 4788888877665554433321 13457888888654 4445688999998
Q ss_pred cccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 289 SRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 289 ~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.... ++... ...+++++.++|||||.|++..
T Consensus 175 d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 6543 33211 1478999999999999999975
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=105.97 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=70.1
Q ss_pred CEEEEeCCCCcHHHHHHhhC--Cc--EEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR--NI--LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~V--~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
.+|||||||+|.++..++++ ++ +++|+ + .+++.+.+. ..+.+..+|... +++ .||+|++..++|+|
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~ 264 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P-----QVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHDW 264 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H-----HHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGGS
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H-----HHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccCC
Confidence 48999999999999999876 34 44455 2 333333321 347888888766 666 49999999999888
Q ss_pred ccCh-HHHHHHHHHcccC---CcEEEEEeC
Q 009069 296 GQYD-GLYLIEVDRVLRP---GGYWILSGP 321 (544)
Q Consensus 296 ~~d~-~~~L~Ei~RVLKP---GG~Lvis~p 321 (544)
.+.. ..+|+++.++||| ||++++...
T Consensus 265 ~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 265 NDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp CHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 7632 4999999999999 999999754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-08 Score=97.61 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=70.6
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccc----cCCCCC--CCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASI----RLPYPS--RAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~----~LPfpd--~sFDlV 286 (544)
.+|||||||+|..+..|++. .++++|+++..+..+...+. +.+. .+.+..++.. .++..+ ++||+|
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ-KAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 38999999999999999875 47888887766654444333 3343 3777777753 233334 789999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++... ..+...++.++.++|||||++++...
T Consensus 153 ~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 153 FIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EECSC----GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 98653 22347899999999999999999753
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-08 Score=100.55 Aligned_cols=102 Identities=10% Similarity=0.037 Sum_probs=71.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH--H--cCCCeEEEEecccc-CCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL--E--RGVPALIGVMASIR-LPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~--e--rgv~~~~~v~d~~~-LPfpd~sFDlV~~~ 289 (544)
..+|||||||+|.++..++++ .++++|+++..+..++..+.. . ....+.+..+|... ++..+++||+|++.
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 170 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 170 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence 458999999999999999876 478889987766555443322 1 12467888888654 44456789999985
Q ss_pred cccccccc-----ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQ-----YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~-----d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. .++.. ....++.++.++|||||.|++...
T Consensus 171 ~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 171 ST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp C-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 43 23111 126899999999999999999853
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.3e-08 Score=95.88 Aligned_cols=130 Identities=9% Similarity=0.036 Sum_probs=91.7
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPY 278 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~----V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPf 278 (544)
++.+.++++ . +.+|||||||+|.++..|++.+ |+++|+++..+..+..+.. ..++ .+.+..+|......
T Consensus 12 L~~i~~~v~--~--g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~-~~gl~~~I~~~~gD~l~~~~ 86 (230)
T 3lec_A 12 LQKVANYVP--K--GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVS-EHGLTSKIDVRLANGLSAFE 86 (230)
T ss_dssp HHHHHTTSC--T--TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHH-HTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHhCC--C--CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEECchhhccc
Confidence 344544442 2 3489999999999999999863 7899998887766655443 4454 48888888777665
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceee
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v 358 (544)
+++.||+|+.....-.. -..++.+..+.|+++|+|+++.. .. ...++......+|..+
T Consensus 87 ~~~~~D~IviaGmGg~l---I~~IL~~~~~~l~~~~~lIlqp~------------~~-------~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 87 EADNIDTITICGMGGRL---IADILNNDIDKLQHVKTLVLQPN------------NR-------EDDLRKWLAANDFEIV 144 (230)
T ss_dssp GGGCCCEEEEEEECHHH---HHHHHHHTGGGGTTCCEEEEEES------------SC-------HHHHHHHHHHTTEEEE
T ss_pred cccccCEEEEeCCchHH---HHHHHHHHHHHhCcCCEEEEECC------------CC-------hHHHHHHHHHCCCEEE
Confidence 55579998754432111 25788889999999999999964 11 2346667777899877
Q ss_pred eee
Q 009069 359 IQK 361 (544)
Q Consensus 359 ~~~ 361 (544)
.+.
T Consensus 145 ~E~ 147 (230)
T 3lec_A 145 AED 147 (230)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-08 Score=103.58 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIR-LPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e----rgv~~~~~v~d~~~-LPfpd~sFDlV~~~ 289 (544)
..+|||||||+|.++..+++. .++++|+++..+..++..+... ....+.+..+|... ++..+++||+|++.
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 188 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence 458999999999999999876 4778888776554443322110 12357788777654 33356789999986
Q ss_pred ccccccccCh----HHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWGQYD----GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~~d~----~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.. .++.... ..+++++.++|||||.|++..
T Consensus 189 ~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 189 SS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred CC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 53 3433221 588999999999999999985
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-08 Score=99.26 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=71.7
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CCC------CCCCeeE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LPY------PSRAFDM 285 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LPf------pd~sFDl 285 (544)
.+|||||||+|..+..|++. .++++|+++.++..+...+. +.+. .+.+..+|+.. ++. ++++||+
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK-KAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH-HTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 38999999999999988764 47889998877755554333 3444 47788877654 232 2578999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|++... ..+...++.++.++|||||+|++..
T Consensus 160 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 160 IFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 998643 2335789999999999999999874
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-08 Score=102.44 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIR-LPYPSRAFDMAHC 288 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e----rgv~~~~~v~d~~~-LPfpd~sFDlV~~ 288 (544)
.+.+|||||||+|.++..+++. .++++|+++..+..+...+... ....+.+.++|... ++..+++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 3468999999999999999875 4778888765554333222110 12357788888654 2333678999998
Q ss_pred cccccccccCh----HHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~h~~~d~----~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.... ++.... ..+++++.++|||||.|++...
T Consensus 158 d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 5433 332211 5899999999999999999854
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-08 Score=102.61 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH----HcCCCeEEEEecccc-CCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIR-LPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~----ergv~~~~~v~d~~~-LPfpd~sFDlV~~~ 289 (544)
+.+|||||||+|.++..+++. .++++|+++..+..++..+.. -....+.+..+|... ++..+++||+|++.
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d 196 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 196 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence 458999999999999999876 478888877655444332221 002357888887654 33346789999986
Q ss_pred ccccccccCh----HHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYD----GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~----~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. .++.... ..+++++.++|||||.|++...
T Consensus 197 ~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 197 SS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp CC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred Cc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 53 2332111 6899999999999999999753
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-07 Score=95.67 Aligned_cols=165 Identities=10% Similarity=0.025 Sum_probs=102.1
Q ss_pred cCCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHH
Q 009069 184 QGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFAL 260 (544)
Q Consensus 184 ~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ 260 (544)
+|-.|.+--...+|..+...--.++.+++ +++ .+|||+|||+|.++..++.+ .|+++|+++..+..+. +.+.
T Consensus 95 ~G~~~~~D~~k~~f~~~~~~er~ri~~~~--~~g--~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~-~N~~ 169 (278)
T 3k6r_A 95 NGIKYKLDVAKIMFSPANVKERVRMAKVA--KPD--ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV-ENIH 169 (278)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHHHHHC--CTT--CEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHH-HHHH
T ss_pred CCEEEEEeccceEEcCCcHHHHHHHHHhc--CCC--CEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHH-HHHH
Confidence 34444443344555555554444565554 333 48999999999999888765 4788888886664444 3444
Q ss_pred HcCC--CeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhh
Q 009069 261 ERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTED 338 (544)
Q Consensus 261 ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~ 338 (544)
.+++ .+.+..+|+..++ ..+.||.|++..- .....+|..+.++|||||.+.+..... ..+.
T Consensus 170 ~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p-----~~~~~~l~~a~~~lk~gG~ih~~~~~~-----------e~~~ 232 (278)
T 3k6r_A 170 LNKVEDRMSAYNMDNRDFP-GENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNTVP-----------EKLM 232 (278)
T ss_dssp HTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEEEE-----------GGGT
T ss_pred HcCCCCcEEEEeCcHHHhc-cccCCCEEEECCC-----CcHHHHHHHHHHHcCCCCEEEEEeeec-----------cccc
Confidence 5555 3677778877765 4578999997542 223678999999999999987753200 0011
Q ss_pred hHhhhhhHHHHHHhhcceeeeeeccEEEEecc
Q 009069 339 LKSEQNGIETIARSLCWKKLIQKKDLAIWQKP 370 (544)
Q Consensus 339 L~~~~~~ie~la~~l~w~~v~~~~~~aIwqKP 370 (544)
.....+.++.+++..+++........+-+-.|
T Consensus 233 ~~~~~e~i~~~~~~~g~~v~~~~~~~Vk~yaP 264 (278)
T 3k6r_A 233 PREPFETFKRITKEYGYDVEKLNELKIKRYAP 264 (278)
T ss_dssp TTTTHHHHHHHHHHTTCEEEEEEEEEEEEETT
T ss_pred chhHHHHHHHHHHHcCCcEEEEEEEEEEeECc
Confidence 11123456677888888754433333333334
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=99.90 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=75.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEecccc-CCC---CCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIR-LPY---PSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~-LPf---pd~sFDlV~~ 288 (544)
+.+|||+|||+|.++..+++. .|+++|+++.++..+..+. ..+++ ++.+..+|+.. ++. ...+||+|++
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~-~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHF-EANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHH-HHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 348999999999999999985 4789999998886666544 34554 57888888654 221 2458999998
Q ss_pred ccccc----ccccCh----HHHHHHHHHcccCCcEEEEEeCCC
Q 009069 289 SRCLI----PWGQYD----GLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 289 ~~~l~----h~~~d~----~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
..-.. ....+. ..++.++.++|+|||.|+++..+.
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 64332 111112 357788899999999999997643
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.70 E-value=8e-08 Score=95.40 Aligned_cols=118 Identities=14% Similarity=0.001 Sum_probs=85.0
Q ss_pred CEEEEeCCCCcHHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~----V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
.+|||||||+|.++..|++.+ ++++|+++..+..+..+. ...++ .+.+..+|......++..||+|+.....-
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~-~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg 101 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQV-RSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGG 101 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHH-HHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEEecchhhccCccccccEEEEeCCch
Confidence 489999999999999999863 789999887776665544 34555 37888888766654444699988654321
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
.. -..++.+..+.|+++|+|+++.. .. ...++......+|..+.+
T Consensus 102 ~l---I~~IL~~~~~~L~~~~~lIlq~~------------~~-------~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 102 TL---IRTILEEGAAKLAGVTKLILQPN------------IA-------AWQLREWSEQNNWLITSE 146 (244)
T ss_dssp HH---HHHHHHHTGGGGTTCCEEEEEES------------SC-------HHHHHHHHHHHTEEEEEE
T ss_pred HH---HHHHHHHHHHHhCCCCEEEEEcC------------CC-------hHHHHHHHHHCCCEEEEE
Confidence 11 25788899999999999999953 11 234566677788986554
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.8e-08 Score=103.67 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=77.2
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--YP 279 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP--fp 279 (544)
+..++...++. +|||+|||+|..+..|++. .++++|+++..+.....+ +...++ ++.+..+|...++ ++
T Consensus 251 ~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~-~~~~g~~~v~~~~~D~~~~~~~~~ 327 (450)
T 2yxl_A 251 ASIVLDPKPGE--TVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDF-VKRMGIKIVKPLVKDARKAPEIIG 327 (450)
T ss_dssp HHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH-HHHTTCCSEEEECSCTTCCSSSSC
T ss_pred HHHhcCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHH-HHHcCCCcEEEEEcChhhcchhhc
Confidence 34445544444 8999999999999998873 478888877666444433 333455 5788888887776 55
Q ss_pred CCCeeEEEe------ccccccccc--------C-------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHC------SRCLIPWGQ--------Y-------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~------~~~l~h~~~--------d-------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||+|++ ...+.+.++ + +..+|.++.++|||||.|++++.
T Consensus 328 ~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 328 EEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp SSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred cCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 678999996 222222111 0 14689999999999999999875
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-08 Score=100.93 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHH----HHH------cCCCeEEEEecccc-CCCCCCCee
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQF----ALE------RGVPALIGVMASIR-LPYPSRAFD 284 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~----A~e------rgv~~~~~v~d~~~-LPfpd~sFD 284 (544)
+.+|||||||+|.++..++++ .++++|+++..+..+...+ ... ....+.+..+|... ++. +++||
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD 154 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFD 154 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCee
Confidence 458999999999999999876 4788888776665444333 000 12357777777543 222 67899
Q ss_pred EEEeccccccccc--C--hHHHHHHHHHcccCCcEEEEEe
Q 009069 285 MAHCSRCLIPWGQ--Y--DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 285 lV~~~~~l~h~~~--d--~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|++.... ++.. . ...+++++.++|||||.|++..
T Consensus 155 ~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 155 VIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99986543 3321 1 2678999999999999999974
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-07 Score=91.87 Aligned_cols=117 Identities=11% Similarity=0.048 Sum_probs=82.8
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCC-CeeEEEecccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSR-AFDMAHCSRCL 292 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~-sFDlV~~~~~l 292 (544)
.+|||||||+|.++..++.. .|+++|+++..+..+..+ +...++ .+.+..+|... +++.+ .||+|+....-
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N-~~~~gl~~~i~~~~~d~l~-~l~~~~~~D~IviaG~G 94 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKN-VEAHGLKEKIQVRLANGLA-AFEETDQVSVITIAGMG 94 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHH-HHHTTCTTTEEEEECSGGG-GCCGGGCCCEEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEEECchhh-hcccCcCCCEEEEcCCC
Confidence 48999999999999999986 378999988777655544 344555 37787777632 22333 69998865432
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
-. -...++.+....|+|+|+|+++.. . ....++......+|..+.+
T Consensus 95 g~---~i~~Il~~~~~~L~~~~~lVlq~~------------~-------~~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 95 GR---LIARILEEGLGKLANVERLILQPN------------N-------REDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp HH---HHHHHHHHTGGGCTTCCEEEEEES------------S-------CHHHHHHHHHHTTEEEEEE
T ss_pred hH---HHHHHHHHHHHHhCCCCEEEEECC------------C-------CHHHHHHHHHHCCCEEEEE
Confidence 11 025789999999999999999854 1 1234666777889987765
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.64 E-value=4.4e-08 Score=98.83 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLP 277 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LP 277 (544)
...++.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++..+..... ..+ ..+.+..+|+..++
T Consensus 14 ~~i~~~i~~~~~~~~~--~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~D~~~~~ 90 (285)
T 1zq9_A 14 PLIINSIIDKAALRPT--DVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQ-GTPVASKLQVLVGDVLKTD 90 (285)
T ss_dssp HHHHHHHHHHTCCCTT--CEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHT-TSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhcCCCCC--CEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEEcceeccc
Confidence 3456677777765544 48999999999999999886 57788887766544433221 222 25788888988877
Q ss_pred CCCCCeeEEEecccccccccCh-HHHH--------------HHH--HHcccCCcEE
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYD-GLYL--------------IEV--DRVLRPGGYW 316 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~-~~~L--------------~Ei--~RVLKPGG~L 316 (544)
++ +||+|+++..+ ++.... ..++ +|+ .++|||||.+
T Consensus 91 ~~--~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 91 LP--FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp CC--CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred ch--hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 65 79999997655 443311 1222 344 3689999986
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-07 Score=98.28 Aligned_cols=102 Identities=14% Similarity=-0.025 Sum_probs=72.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC-CCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-PYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L-Pfpd~sFDlV~~~~~l~h~ 295 (544)
+.+|||+|||+|.++..+++.+ |+++|+++.++..+..+.. .+++...+..+|.... +...+.||+|++..-....
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~-~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAAL-RLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHH-HhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 4489999999999999998864 7888888877765554433 4466656667776553 2223449999986532111
Q ss_pred c--------cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 296 G--------QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~--------~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. .....++.++.++|||||.|++...
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 1124788999999999999998764
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=100.68 Aligned_cols=112 Identities=11% Similarity=0.065 Sum_probs=80.3
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPS 280 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--fpd 280 (544)
.+..++...++ .+|||+|||+|..+..+++. .++++|+++..+.....+ +...+..+.+..+|...++ +++
T Consensus 237 ~~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~-~~~~g~~~~~~~~D~~~~~~~~~~ 313 (429)
T 1sqg_A 237 GCMTWLAPQNG--EHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDN-LKRLGMKATVKQGDGRYPSQWCGE 313 (429)
T ss_dssp THHHHHCCCTT--CEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHH-HHHTTCCCEEEECCTTCTHHHHTT
T ss_pred HHHHHcCCCCc--CeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH-HHHcCCCeEEEeCchhhchhhccc
Confidence 34455554444 48999999999999999874 488999998877655543 3445667788888887766 566
Q ss_pred CCeeEEEec------cccccccc-------C--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCS------RCLIPWGQ-------Y--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~------~~l~h~~~-------d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|++. ..+.+.++ . ...+|.++.++|||||+|++++.
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 889999962 12222111 0 03789999999999999999874
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.3e-08 Score=95.27 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=70.0
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-C-----CCCCeeE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-Y-----PSRAFDM 285 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L-P-f-----pd~sFDl 285 (544)
++|||||||+|..+..+++. .++++|+++..+..+...+ .+.+. .+.+..+|+... + + ++++||+
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFI-RKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 48999999999999998764 4788888776665444333 33454 377887776442 2 1 2578999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|++.. ...+...++.++.++|||||++++..
T Consensus 151 I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 151 GFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99753 22334789999999999999999874
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.2e-08 Score=95.18 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=77.2
Q ss_pred CCCCEEEEeCCCCcHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 217 GSIRTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+.+.+|||||||+|.++..+.. ..++++||++.++.-+.. .+...+.+..+.+.|....+.+. +||+|++.-++|++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~-~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~L 181 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITP-FAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLL 181 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHH-HHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHh
Confidence 4456999999999999998773 378999998877754443 34455788889998988877655 89999999888777
Q ss_pred ccChHHHHHHHHHcccCCcEEEEE
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
.........++.+.|+++|.+|-.
T Consensus 182 E~q~~~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 182 EREQAGSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred hhhchhhHHHHHHHhcCCCEEEEc
Confidence 554444444889999999777654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=98.67 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=75.5
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCC----CCCCeeEEEecc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPY----PSRAFDMAHCSR 290 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPf----pd~sFDlV~~~~ 290 (544)
.+.+|||+|||+|.++..+++. .++++|+++..+..+..+. ..+++ ++.+..+|+..... .+++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~-~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENA-RLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHH-HHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHH-HHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 3458999999999999999875 6888999887776555443 34454 37888888655421 257899999865
Q ss_pred cccccc--------cChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 291 CLIPWG--------QYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 291 ~l~h~~--------~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
-..... .....++.++.++|+|||.|+++...
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 332211 11257899999999999999999764
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-07 Score=97.22 Aligned_cols=104 Identities=9% Similarity=-0.038 Sum_probs=75.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEeccccCCC----CCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRLPY----PSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~LPf----pd~sFDlV~~ 288 (544)
+.+|||+|||+|.++..+++. .++++|+++..+..+..+ +..+++ ++.+..+|...... .+.+||+|++
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n-~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQN-VELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 348999999999999999986 478889988777555543 334566 57888888655421 1468999999
Q ss_pred ccccc--------ccccChHHHHHHHHHcccCCcEEEEEeCCC
Q 009069 289 SRCLI--------PWGQYDGLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 289 ~~~l~--------h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
..-.. ........++.++.++|+|||.++++..+.
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 65321 111223688999999999999999997643
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=96.77 Aligned_cols=88 Identities=16% Similarity=0.279 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCCCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYP 279 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LPfp 279 (544)
..++.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++..+..... ..+ .++.+..+|+..++++
T Consensus 29 ~i~~~i~~~~~~~~~--~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~-~~~~~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKIKSS--DIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCL-YEGYNNLEVYEGDAIKTVFP 105 (299)
T ss_dssp HHHHHHHHHHCCCTT--CEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEC----CCSSCCC
T ss_pred HHHHHHHHhcCCCCc--CEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEECchhhCCcc
Confidence 455667777665544 48999999999999999987 57888887766655444333 233 3578888888877764
Q ss_pred CCCeeEEEecccccccc
Q 009069 280 SRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~ 296 (544)
+||+|+++..+ ++.
T Consensus 106 --~~D~Vv~n~py-~~~ 119 (299)
T 2h1r_A 106 --KFDVCTANIPY-KIS 119 (299)
T ss_dssp --CCSEEEEECCG-GGH
T ss_pred --cCCEEEEcCCc-ccc
Confidence 79999998755 444
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-07 Score=94.65 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=66.9
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHH----HcCCCeEEEEeccccCCCCCCCeeEEEeccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~----ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~ 291 (544)
.+++|||||||+|.++..+++. .++++|+++.++..+...+.. -....+.+..+|..... ++||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence 3468999999999999998875 467777766544332221110 01235777777776654 7899999863
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.++..+++++.++|||||.|++..
T Consensus 148 -----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 235569999999999999999974
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-07 Score=102.55 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=76.5
Q ss_pred HHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCC-CCC
Q 009069 209 GKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPY-PSR 281 (544)
Q Consensus 209 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPf-pd~ 281 (544)
..++......+.+|||+|||+|..+..|++. .|+++|+++..+..+..+.. +.++ ++.+...|...++. .++
T Consensus 108 ~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~-r~g~~nv~~~~~D~~~~~~~~~~ 186 (479)
T 2frx_A 108 VAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANIS-RCGISNVALTHFDGRVFGAAVPE 186 (479)
T ss_dssp HHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHH-HHTCCSEEEECCCSTTHHHHSTT
T ss_pred HHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCcEEEEeCCHHHhhhhccc
Confidence 3444444113448999999999999998874 37888888776654444333 3354 57788888777653 467
Q ss_pred CeeEEEec------ccccc-------cccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCS------RCLIP-------WGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~------~~l~h-------~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|++. ..+.+ |..+ ...+|.++.++|||||+|++++.
T Consensus 187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 89999972 11111 1110 14689999999999999999864
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.4e-07 Score=97.76 Aligned_cols=113 Identities=13% Similarity=0.147 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc--
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR-- 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~-- 275 (544)
.+..++.+.+.+....+ .+|||+|||+|.++..|++. .++++|+++.++..+..+ +...++ ++.+..+|...
T Consensus 271 ~e~l~~~~~~~l~~~~~--~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n-~~~~~~~~v~f~~~d~~~~l 347 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQN-ARLNGLQNVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHTCCTT--CEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCTTSCC
T ss_pred HHHHHHHHHHhhcCCCC--CEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH-HHHcCCCceEEEECCHHHHh
Confidence 44455556666654433 48999999999999999986 578888888777655543 334454 58888888766
Q ss_pred --CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 276 --LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 --LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++++++||+|++..-. .. ...++..+. .++|++.++++..
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr---~g-~~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPAR---AG-AAGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp SSSGGGTTCCSEEEECCCT---TC-CHHHHHHHH-HHCCSEEEEEESC
T ss_pred hhhhhhcCCCCEEEECCCC---cc-HHHHHHHHH-hcCCCeEEEEECC
Confidence 44667889999986633 21 134555544 4789999999854
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-07 Score=96.34 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=75.2
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~ 288 (544)
.+.+|||+|||+|.++..+++. .+.++|+++..+..+..... ..++.+.+..+|... +.+.+.||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~-~~g~~~~i~~~D~l~-~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLA-NLLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH-hCCCCceEEECCCCC-ccccCCccEEEE
Confidence 3458999999999998887643 46888887766655554443 345577888887655 335678999999
Q ss_pred cccccccccCh-----------------HHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCLIPWGQYD-----------------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~h~~~d~-----------------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..+.++..+. ..++..+.+.|||||++++..|
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 98765443211 2589999999999999999976
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-07 Score=94.99 Aligned_cols=99 Identities=15% Similarity=0.018 Sum_probs=75.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
..+|||||||+|.++..++.. .++++|+++.++.-... .+...|++..+.+.|...-+ +.+.||+|++.-++++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~-~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDE-ALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLPC 210 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHH-HHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHHH
Confidence 558999999999999888665 68899998877754443 33445788888887765554 5678999999999977
Q ss_pred cccChHHHHHHHHHcccCCcEEEEE
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
+.++....+.++.+.|+|+|.||--
T Consensus 211 Le~q~kg~g~~ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 211 LETQQRGSGWEVIDIVNSPNIVVTF 235 (281)
T ss_dssp HHHHSTTHHHHHHHHSSCSEEEEEE
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEec
Confidence 7654433333999999999988765
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=7.6e-08 Score=103.89 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=76.5
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-CCCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-YPSR 281 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP-fpd~ 281 (544)
+..++....+. +|||+|||+|..+..|+++ .|+++|+++..+..+..+ +.+.|+.+.+..+|...++ +.++
T Consensus 93 ~a~~L~~~~g~--~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n-~~r~G~~v~~~~~Da~~l~~~~~~ 169 (464)
T 3m6w_A 93 VGVLLDPKPGE--RVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLEN-VERWGAPLAVTQAPPRALAEAFGT 169 (464)
T ss_dssp HHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH-HHHHCCCCEEECSCHHHHHHHHCS
T ss_pred HHHhcCcCCCC--EEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCeEEEEECCHHHhhhhccc
Confidence 34445544444 8999999999999998864 378888888766544433 3344656777777876665 3467
Q ss_pred CeeEEEec------ccccc-------cccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCS------RCLIP-------WGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~------~~l~h-------~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|++. ..+.+ |..+ ...+|.++.++|||||.|++++-
T Consensus 170 ~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 170 YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred cCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 89999951 11111 1111 15689999999999999999864
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-07 Score=98.22 Aligned_cols=102 Identities=11% Similarity=0.006 Sum_probs=75.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCC----CCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPY----PSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPf----pd~sFDlV~~~ 289 (544)
+.+|||+|||+|.++..+++. .++++|+++..+..+..+. ..+++ ++.+..+|...... .+++||+|++.
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~-~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENA-KLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 458999999999999999986 4788999887776555443 34555 57888888655421 25789999996
Q ss_pred ccccccc--------cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWG--------QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~--------~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.-..... .....++.++.++|+|||.|+++..
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 5332211 2235788999999999999999875
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-07 Score=96.11 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
...++.+.+.+.... ..+|||+|||+|.++..++++ .++++|+++.++..+ ..+.+..+|....
T Consensus 25 ~~l~~~~~~~~~~~~--~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~ 93 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPR--GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLW 93 (421)
T ss_dssp HHHHHHHHHHCCCCT--TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGC
T ss_pred HHHHHHHHHhhccCC--CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhc
Confidence 456666777765322 348999999999999999863 588999988766322 3567788887765
Q ss_pred CCCCCCeeEEEeccccccccc---------Ch-------------------HHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQ---------YD-------------------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~---------d~-------------------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ +++.||+|+++.-+..... +. ..++..+.++|+|||.+++..|
T Consensus 94 ~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 94 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 4 3568999999754422211 01 2668899999999999999976
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=102.24 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=75.5
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC-CCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-YPS 280 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP-fpd 280 (544)
+..++....+. +|||+|||+|..+..|++. .|+++|+++..+.....+.. +.|+ ++.+...|...++ ..+
T Consensus 97 ~~~~L~~~~g~--~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~-r~g~~nv~v~~~Da~~l~~~~~ 173 (456)
T 3m4x_A 97 VGTAAAAKPGE--KVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIE-RWGVSNAIVTNHAPAELVPHFS 173 (456)
T ss_dssp HHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHH-HHTCSSEEEECCCHHHHHHHHT
T ss_pred HHHHcCCCCCC--EEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhhhcc
Confidence 34445544444 8999999999999888864 37888998876654444333 3454 4677777776654 346
Q ss_pred CCeeEEEeccc------cc-------ccccCh--------HHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRC------LI-------PWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~------l~-------h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|++..- +. .|..+. ..+|.++.++|||||.|++++-
T Consensus 174 ~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 174 GFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp TCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred ccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 78999997321 10 011111 2789999999999999999864
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=4.2e-07 Score=93.76 Aligned_cols=93 Identities=9% Similarity=0.029 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
+.+|||+|||+|.++.. ++. .++++|+++..+..++.+ +..+++ .+.+..+|..... ++||+|++....
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n-~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKN-IKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK-- 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT--
T ss_pred CCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH--
Confidence 34899999999999999 764 478889988777555544 334454 5888888887765 789999986421
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....++.++.++|+|||.+++...
T Consensus 269 ---~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 269 ---FAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp ---TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ---hHHHHHHHHHHHcCCCCEEEEEEe
Confidence 124789999999999999999753
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.2e-07 Score=96.35 Aligned_cols=96 Identities=18% Similarity=0.150 Sum_probs=70.0
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+|||+|||+|.++..|++. .++++|+++.++..++.+. ..+++.+.+..+|+..+.. . +||+|++.....
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~-~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr~--- 364 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNV-EINNVDAEFEVASDREVSV-K-GFDTVIVDPPRA--- 364 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHHTCCEEEEECCTTTCCC-T-TCSEEEECCCTT---
T ss_pred CCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HHcCCcEEEEECChHHcCc-c-CCCEEEEcCCcc---
Confidence 348999999999999999986 5788899887776555443 3445558888888877643 2 899999865321
Q ss_pred cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.....++..+ +.|+|||.++++..
T Consensus 365 g~~~~~~~~l-~~l~p~givyvsc~ 388 (425)
T 2jjq_A 365 GLHPRLVKRL-NREKPGVIVYVSCN 388 (425)
T ss_dssp CSCHHHHHHH-HHHCCSEEEEEESC
T ss_pred chHHHHHHHH-HhcCCCcEEEEECC
Confidence 1113455555 45999999999954
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-07 Score=97.61 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh-----------------CCcEEEeCCccchHHHHHHHHHHcCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-----------------RNILAVSFAPRDTHEAQVQFALERGV 264 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-----------------~~V~~vdisp~dls~a~v~~A~ergv 264 (544)
...++.+.+++.... +.+|||.|||+|.++..+++ ..+.++|+++..+..+..++.. +++
T Consensus 157 ~~v~~~mv~~l~~~~--~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l-~g~ 233 (445)
T 2okc_A 157 RPLIQAMVDCINPQM--GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HGI 233 (445)
T ss_dssp HHHHHHHHHHHCCCT--TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHhCCCC--CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH-hCC
Confidence 446667777765443 34899999999998877654 3689999988766555544433 454
Q ss_pred ---CeEEEEeccccCCCCCCCeeEEEecccccccccC----------------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 265 ---PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY----------------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 265 ---~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d----------------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+..+|+...+.. ..||+|+++..+.+.... ...++..+.++|||||+++++.|
T Consensus 234 ~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 234 GTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 566778887776644 489999998766543211 13789999999999999999876
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-07 Score=104.02 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=76.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEecccc-CCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIR-LPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~-LPfpd~sFDlV~~~~~ 291 (544)
+.+|||+|||+|.++..++.. .|+++|+++.++..+..+.. .+++ .+.+.++|... ++...++||+|++..-
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~-~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLR-LNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 348999999999999998875 37899998887766655444 3454 48888888765 4445678999998653
Q ss_pred cc----------ccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 292 LI----------PWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 292 l~----------h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
.. ....+...++.++.++|+|||+|+++...
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 21 11112257899999999999999999764
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.1e-07 Score=91.22 Aligned_cols=89 Identities=10% Similarity=-0.024 Sum_probs=61.6
Q ss_pred CCCEEEEeCCCC------cH-HHHHHhh--CCcEEEeCCccchHHHHHHHHHHcCCCeEE-EEeccccCCCCCCCeeEEE
Q 009069 218 SIRTAIDTGCGV------AS-WGAYLMS--RNILAVSFAPRDTHEAQVQFALERGVPALI-GVMASIRLPYPSRAFDMAH 287 (544)
Q Consensus 218 ~~r~VLDIGCGt------G~-~a~~La~--~~V~~vdisp~dls~a~v~~A~ergv~~~~-~v~d~~~LPfpd~sFDlV~ 287 (544)
.+.+|||+|||+ |+ .++.+.. ..|+++|+++. + ..+.+ .++|...++++ ++||+|+
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v------------~~v~~~i~gD~~~~~~~-~~fD~Vv 128 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V------------SDADSTLIGDCATVHTA-NKWDLII 128 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B------------CSSSEEEESCGGGCCCS-SCEEEEE
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C------------CCCEEEEECccccCCcc-CcccEEE
Confidence 345899999944 75 2222222 25889999885 1 13566 88898888765 6899999
Q ss_pred ecccccccc-----cC------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWG-----QY------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~-----~d------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+... ++. +. ...+++++.|+|||||.|++...
T Consensus 129 sn~~~-~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 129 SDMYD-PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp ECCCC-CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EcCCc-cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 97542 211 10 14789999999999999999764
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-06 Score=91.77 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=68.3
Q ss_pred CCEEEEeCCCCcHHHHHHhh-------------------CCcEEEeCCccchHHHHHHHHHH------------c--CCC
Q 009069 219 IRTAIDTGCGVASWGAYLMS-------------------RNILAVSFAPRDTHEAQVQFALE------------R--GVP 265 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-------------------~~V~~vdisp~dls~a~v~~A~e------------r--gv~ 265 (544)
.-+|+|+|||+|..+..+.. ..|..-|+..+|...-...+... . +..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 46899999999987777621 13566788888875444333210 0 001
Q ss_pred eEEEEec-cccCCCCCCCeeEEEecccccccccCh--------------------------------------HHHHHHH
Q 009069 266 ALIGVMA-SIRLPYPSRAFDMAHCSRCLIPWGQYD--------------------------------------GLYLIEV 306 (544)
Q Consensus 266 ~~~~v~d-~~~LPfpd~sFDlV~~~~~l~h~~~d~--------------------------------------~~~L~Ei 306 (544)
....+.. ...-.||+++||+|+++.+| ||..+. ..+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222 22344899999999999999 776522 2368888
Q ss_pred HHcccCCcEEEEEeC
Q 009069 307 DRVLRPGGYWILSGP 321 (544)
Q Consensus 307 ~RVLKPGG~Lvis~p 321 (544)
.|.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999999999864
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=87.45 Aligned_cols=121 Identities=16% Similarity=0.110 Sum_probs=75.9
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEec
Q 009069 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMA 272 (544)
Q Consensus 197 F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d 272 (544)
|...+...+.++.+...+.++ .+|||+|||+|.|+.+++++ .+.++++.. |+....+.. ...+.++.....+
T Consensus 55 YrSRaA~KL~ei~ek~~l~~~--~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv-Dl~~~pi~~-~~~g~~ii~~~~~ 130 (277)
T 3evf_A 55 AVSRGTAKLRWFHERGYVKLE--GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR-DGHEKPMNV-QSLGWNIITFKDK 130 (277)
T ss_dssp CSSTHHHHHHHHHHTTSSCCC--EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC-TTCCCCCCC-CBTTGGGEEEECS
T ss_pred ccccHHHHHHHHHHhCCCCCC--CEEEEecCCCCHHHHHHHHhcCCCcceeEEEec-cCccccccc-CcCCCCeEEEecc
Confidence 455555566666666444443 38999999999999988765 355666652 321000000 0012234444555
Q ss_pred cccCCCCCCCeeEEEeccccc---ccccCh--HHHHHHHHHcccCC-cEEEEEeC
Q 009069 273 SIRLPYPSRAFDMAHCSRCLI---PWGQYD--GLYLIEVDRVLRPG-GYWILSGP 321 (544)
Q Consensus 273 ~~~LPfpd~sFDlV~~~~~l~---h~~~d~--~~~L~Ei~RVLKPG-G~Lvis~p 321 (544)
+....++++.||+|+|..+.+ ++.+.. ..+|..+.++|||| |.|++...
T Consensus 131 ~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 131 TDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp CCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred ceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 555667788999999977553 233322 13578889999999 99999864
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-08 Score=99.52 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=72.6
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC-
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS- 280 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd- 280 (544)
.++.+.+.+....+ .+|||+|||+|.++..|+++ .++++|+++.++..+..... ....+.+..+|...+++++
T Consensus 17 ~~~~i~~~~~~~~~--~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLNLKET--DTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCSS--EEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCCC--CEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccC
Confidence 44556666655443 48999999999999999886 46777777766543222111 1235778888998888774
Q ss_pred CCeeEEEeccccc-----------ccccChHHHH----HHHHHcccCCcEEEEEe
Q 009069 281 RAFDMAHCSRCLI-----------PWGQYDGLYL----IEVDRVLRPGGYWILSG 320 (544)
Q Consensus 281 ~sFDlV~~~~~l~-----------h~~~d~~~~L----~Ei~RVLKPGG~Lvis~ 320 (544)
++| .|+++.-+. |+ .....++ ..+.|+|+|||.|.+..
T Consensus 93 ~~f-~vv~n~Py~~~~~~~~~~~~~~-~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 93 QRY-KIVGNIPYHLSTQIIKKVVFES-RASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SEE-EEEEECCSSSCHHHHHHHHHHC-CCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCc-EEEEeCCccccHHHHHHHHhCC-CCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 689 677754321 11 1123334 66889999999887764
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=9.9e-07 Score=89.84 Aligned_cols=87 Identities=9% Similarity=0.039 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
...++.+.+.+....+. +|||||||+|.++..|+++ .++++|+++.++..+...+. ...++.+..+|+..++++
T Consensus 36 ~~i~~~Iv~~l~~~~~~--~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~ 111 (295)
T 3gru_A 36 KNFVNKAVESANLTKDD--VVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLN 111 (295)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCcc
Confidence 34667777777665544 8999999999999999886 58999999988766555443 234688999999999988
Q ss_pred CCCeeEEEecccc
Q 009069 280 SRAFDMAHCSRCL 292 (544)
Q Consensus 280 d~sFDlV~~~~~l 292 (544)
+.+||+|+++..+
T Consensus 112 ~~~fD~Iv~NlPy 124 (295)
T 3gru_A 112 KLDFNKVVANLPY 124 (295)
T ss_dssp GSCCSEEEEECCG
T ss_pred cCCccEEEEeCcc
Confidence 8889999988754
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=8.6e-07 Score=87.31 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
...++.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++..+..... ...++.+..+|...++++
T Consensus 16 ~~~~~~i~~~~~~~~~--~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEH--DNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQFKFP 91 (244)
T ss_dssp HHHHHHHHTTCCCCTT--CEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGCCCC
T ss_pred HHHHHHHHHhCCCCCC--CEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhc--cCCCeEEEEChHHhCCcc
Confidence 3455667766655443 48999999999999999987 46777776654433322211 123688889999999887
Q ss_pred C-CCeeEEEecccc
Q 009069 280 S-RAFDMAHCSRCL 292 (544)
Q Consensus 280 d-~sFDlV~~~~~l 292 (544)
+ ..| .|+++..+
T Consensus 92 ~~~~~-~vv~nlPy 104 (244)
T 1qam_A 92 KNQSY-KIFGNIPY 104 (244)
T ss_dssp SSCCC-EEEEECCG
T ss_pred cCCCe-EEEEeCCc
Confidence 4 456 45565533
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.9e-06 Score=88.47 Aligned_cols=106 Identities=11% Similarity=0.059 Sum_probs=71.3
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC--C
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--Y 278 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP--f 278 (544)
.++.+.+.+... +.+|||+|||+|.++..|++. .|+++|+++.++..+..+ +..+++ ++.+..+|+..+. +
T Consensus 202 l~~~~~~~~~~~---~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n-~~~ng~~~v~~~~~d~~~~~~~~ 277 (369)
T 3bt7_A 202 MLEWALDVTKGS---KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYN-IAANHIDNVQIIRMAAEEFTQAM 277 (369)
T ss_dssp HHHHHHHHTTTC---CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHH-HHHTTCCSEEEECCCSHHHHHHH
T ss_pred HHHHHHHHhhcC---CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEECCHHHHHHHH
Confidence 334444444332 347999999999999999875 588999988777655544 344555 5788888765531 1
Q ss_pred CC--------------CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 279 PS--------------RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 279 pd--------------~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.. .+||+|+...-. ..+..++.+.|+++|.+++..
T Consensus 278 ~~~~~~~~l~~~~~~~~~fD~Vv~dPPr-------~g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 278 NGVREFNRLQGIDLKSYQCETIFVDPPR-------SGLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp SSCCCCTTGGGSCGGGCCEEEEEECCCT-------TCCCHHHHHHHTTSSEEEEEE
T ss_pred hhccccccccccccccCCCCEEEECcCc-------cccHHHHHHHHhCCCEEEEEE
Confidence 11 379999975422 123456777788999888875
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=3e-06 Score=93.15 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh----------------------CCcEEEeCCccchHHHHHHHH
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS----------------------RNILAVSFAPRDTHEAQVQFA 259 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~----------------------~~V~~vdisp~dls~a~v~~A 259 (544)
...++.+.+++.... +.+|||.+||+|.|...+++ ..+.++|+++..+.-+...+.
T Consensus 155 ~~iv~~mv~~l~p~~--~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~ 232 (541)
T 2ar0_A 155 RPLIKTIIHLLKPQP--REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 232 (541)
T ss_dssp HHHHHHHHHHHCCCT--TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC--CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence 445566677765443 34899999999998877653 258899997766655554443
Q ss_pred HHcCCC------eEEEEeccccCC-CCCCCeeEEEeccccccccc------------C-hHHHHHHHHHcccCCcEEEEE
Q 009069 260 LERGVP------ALIGVMASIRLP-YPSRAFDMAHCSRCLIPWGQ------------Y-DGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 260 ~ergv~------~~~~v~d~~~LP-fpd~sFDlV~~~~~l~h~~~------------d-~~~~L~Ei~RVLKPGG~Lvis 319 (544)
. +++. ..+..+|+...+ .....||+|+++.-+..... + ...++..+.+.|||||++++.
T Consensus 233 l-~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V 311 (541)
T 2ar0_A 233 L-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 311 (541)
T ss_dssp T-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred H-hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 2 3443 566777765443 34578999999875533221 1 147899999999999999999
Q ss_pred eC
Q 009069 320 GP 321 (544)
Q Consensus 320 ~p 321 (544)
.|
T Consensus 312 ~p 313 (541)
T 2ar0_A 312 VP 313 (541)
T ss_dssp EE
T ss_pred ec
Confidence 76
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.18 E-value=5.1e-06 Score=87.48 Aligned_cols=114 Identities=13% Similarity=0.007 Sum_probs=78.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC------------------------------------------Cc
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------------------------------------------NI 241 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------------------------------------------~V 241 (544)
....+..+..... +..|||++||+|.++..++.. .|
T Consensus 183 lAa~ll~~~~~~~--~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 183 LAAGLIYLTPWKA--GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHTSCCCT--TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHhhCCCC--CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 3444555544443 348999999999988877543 38
Q ss_pred EEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccccccc---ChHHHHHHHHHcccC--Cc
Q 009069 242 LAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ---YDGLYLIEVDRVLRP--GG 314 (544)
Q Consensus 242 ~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~---d~~~~L~Ei~RVLKP--GG 314 (544)
.++|+++.++..+..+. ...++ .+.+.+.|...++.+ .+||+|+++.-+..-.. +...++.++.++||+ ||
T Consensus 261 ~GvDid~~ai~~Ar~Na-~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~ 338 (385)
T 3ldu_A 261 YGYDIDEESIDIARENA-EIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNW 338 (385)
T ss_dssp EEEESCHHHHHHHHHHH-HHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSC
T ss_pred EEEECCHHHHHHHHHHH-HHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCC
Confidence 89999888776655443 34455 488899999888765 58999999885432221 114567777778876 88
Q ss_pred EEEEEeC
Q 009069 315 YWILSGP 321 (544)
Q Consensus 315 ~Lvis~p 321 (544)
.+++..+
T Consensus 339 ~~~iit~ 345 (385)
T 3ldu_A 339 SYYLITS 345 (385)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 8877754
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.7e-06 Score=86.40 Aligned_cols=114 Identities=11% Similarity=0.011 Sum_probs=77.1
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC------------------------------------------Cc
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------------------------------------------NI 241 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------------------------------------------~V 241 (544)
....+..+.....+ ..|||.+||+|.++..++.. .+
T Consensus 189 lAa~ll~l~~~~~~--~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 189 MAAALVLLTSWHPD--RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHSCCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHhCCCCC--CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 33445555544433 47999999999988776542 28
Q ss_pred EEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccccccc---ChHHHHHHHHHcccC--Cc
Q 009069 242 LAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ---YDGLYLIEVDRVLRP--GG 314 (544)
Q Consensus 242 ~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~---d~~~~L~Ei~RVLKP--GG 314 (544)
+++|+++.++..+..+. ...++ .+.+.+.|...++.+ .+||+|+++.-+..-.. +...+..++.++||+ ||
T Consensus 267 ~GvDid~~al~~Ar~Na-~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~ 344 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNA-VEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTW 344 (393)
T ss_dssp EEEESCHHHHHHHHHHH-HHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred EEEECCHHHHHHHHHHH-HHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCC
Confidence 89999888776665443 34555 378899999888865 48999999974322111 114556666677766 88
Q ss_pred EEEEEeC
Q 009069 315 YWILSGP 321 (544)
Q Consensus 315 ~Lvis~p 321 (544)
.+++..+
T Consensus 345 ~~~iit~ 351 (393)
T 3k0b_A 345 SVYVLTS 351 (393)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 8888755
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=83.97 Aligned_cols=114 Identities=14% Similarity=0.043 Sum_probs=78.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC------------------------------------------Cc
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------------------------------------------NI 241 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------------------------------------------~V 241 (544)
....+..+.....+ ..+||.+||+|+++..++.. .+
T Consensus 182 LAaall~l~~~~~~--~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 182 MAAAIILLSNWFPD--KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHTTCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHhCCCCC--CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 33445555444443 48999999999988776542 28
Q ss_pred EEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccccccccC---hHHHHHHHHHcccC--Cc
Q 009069 242 LAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY---DGLYLIEVDRVLRP--GG 314 (544)
Q Consensus 242 ~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d---~~~~L~Ei~RVLKP--GG 314 (544)
+++|+++.++..+..+ +...++ .+.+.+.|...++.+ .+||+|+++.-+..-..+ ...++.++.+.||+ ||
T Consensus 260 ~GvDid~~al~~Ar~N-a~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~ 337 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKN-AREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTW 337 (384)
T ss_dssp EEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred EEEECCHHHHHHHHHH-HHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCc
Confidence 8999988877655544 344555 378899999888865 489999998744222221 24667777777776 88
Q ss_pred EEEEEeC
Q 009069 315 YWILSGP 321 (544)
Q Consensus 315 ~Lvis~p 321 (544)
.+++..+
T Consensus 338 ~~~iit~ 344 (384)
T 3ldg_A 338 SQFILTN 344 (384)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 8888765
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=9.7e-06 Score=85.42 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=66.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---------------------CcEEEeCCccchHHHHHHH-------HHHcC--CCeEE
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---------------------NILAVSFAPRDTHEAQVQF-------ALERG--VPALI 268 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---------------------~V~~vdisp~dls~a~v~~-------A~erg--v~~~~ 268 (544)
.-+|+|+||++|..+..+... .+..-|+..+|...-...+ ..+.+ .+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 457999999999877766432 2345577666664332222 12222 23344
Q ss_pred EEec---cccCCCCCCCeeEEEecccccccccChH---------------------------------------HHHHHH
Q 009069 269 GVMA---SIRLPYPSRAFDMAHCSRCLIPWGQYDG---------------------------------------LYLIEV 306 (544)
Q Consensus 269 ~v~d---~~~LPfpd~sFDlV~~~~~l~h~~~d~~---------------------------------------~~L~Ei 306 (544)
..+. .....||+++||+|+++.+| ||..+.. .+|+-.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 23356899999999999999 7865431 125555
Q ss_pred HHcccCCcEEEEEeC
Q 009069 307 DRVLRPGGYWILSGP 321 (544)
Q Consensus 307 ~RVLKPGG~Lvis~p 321 (544)
.|.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (384)
T 2efj_A 212 SEELISRGRMLLTFI 226 (384)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhccCCeEEEEEe
Confidence 899999999999865
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2e-05 Score=79.26 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
...++.|.+.+.... + +|||||||+|.++..|+++ .++++|+++.++..+..++. ..++.+..+|...++++
T Consensus 33 ~~i~~~Iv~~~~~~~--~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 33 EAHLRRIVEAARPFT--G-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHHHHHCCCC--S-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGGGSCGG
T ss_pred HHHHHHHHHhcCCCC--C-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChhhCChh
Confidence 345667777776544 3 7999999999999999987 58999998877755443332 24688999999988876
Q ss_pred CC-CeeEEEecccc
Q 009069 280 SR-AFDMAHCSRCL 292 (544)
Q Consensus 280 d~-sFDlV~~~~~l 292 (544)
+. .||.|+++.-+
T Consensus 107 ~~~~~~~iv~NlPy 120 (271)
T 3fut_A 107 EVPQGSLLVANLPY 120 (271)
T ss_dssp GSCTTEEEEEEECS
T ss_pred hccCccEEEecCcc
Confidence 53 68999998744
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-05 Score=81.51 Aligned_cols=109 Identities=11% Similarity=-0.022 Sum_probs=71.4
Q ss_pred HHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCC--
Q 009069 209 GKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPS-- 280 (544)
Q Consensus 209 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd-- 280 (544)
..++...++. +|||+|||+|..+..|++. .|+++|+++..+.....+ +.+.++ ++.+...|...++...
T Consensus 95 ~~~l~~~~g~--~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~ 171 (309)
T 2b9e_A 95 AMLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATL-LARAGVSCCELAEEDFLAVSPSDPR 171 (309)
T ss_dssp HHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCGGGSCTTCGG
T ss_pred HHHhCCCCCC--EEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEeCChHhcCccccc
Confidence 3444445444 8999999999999988863 488899988766544433 334454 5788888887776432
Q ss_pred -CCeeEEEec------ccccc-----c----c-cCh-------HHHHHHHHHcccCCcEEEEEeC
Q 009069 281 -RAFDMAHCS------RCLIP-----W----G-QYD-------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 -~sFDlV~~~------~~l~h-----~----~-~d~-------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+||.|++. ..+.. | . .+. ..+|..+.++|+ ||+|+.++-
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 579999962 11111 1 1 111 246778888887 999999864
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.05 E-value=6.4e-06 Score=82.00 Aligned_cols=84 Identities=14% Similarity=0.185 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
...++.+.+.+....+. +|||||||+|.++..|+++ .++++|+++.++..+...+. ...++.+..+|+..++++
T Consensus 15 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~--~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTD--TLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYN--QQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHT--TCTTEEEEESCTTTCCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHh--hCCCcEEEEcchHhCCHH
Confidence 34566777777665544 8999999999999999987 47888887766644433322 134688999999888765
Q ss_pred C----CCeeEEEecc
Q 009069 280 S----RAFDMAHCSR 290 (544)
Q Consensus 280 d----~sFDlV~~~~ 290 (544)
+ +.|| |+++.
T Consensus 91 ~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 91 SVKTDKPLR-VVGNL 104 (255)
T ss_dssp GSCCSSCEE-EEEEC
T ss_pred HhccCCCeE-EEecC
Confidence 3 5688 66655
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=9.6e-06 Score=85.25 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=70.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc--------------CCC-eEEEEeccccCCC-
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER--------------GVP-ALIGVMASIRLPY- 278 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~er--------------gv~-~~~~v~d~~~LPf- 278 (544)
+.+|||+|||+|.++..++.+ .|+++|+++..+..+..+..... ++. +.+..+|+..+..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 448999999999999998875 47889998876655554444331 554 7777777654421
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..+.||+|+... +. ....++..+.+.|||||.++++.
T Consensus 128 ~~~~fD~I~lDP----~~-~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP----FG-SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC----SS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC----CC-CHHHHHHHHHHhcCCCCEEEEEe
Confidence 135799999543 22 24689999999999999988874
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=3e-05 Score=81.95 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=69.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEeccccCC--CCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP---ALIGVMASIRLP--YPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~---~~~~v~d~~~LP--fpd~sFDlV~~ 288 (544)
+.+|||++||+|.++..++.+ .|+++|+++..+..+.. .+..+++. +.+..+|+..+- ...+.||+|++
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~-N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKE-NFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHH-HHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 348999999999999998873 37888988866644443 33445553 777777764431 12457999998
Q ss_pred cccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 289 ~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.. + .....++..+.+.|+|||+++++.
T Consensus 132 DP----~-g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP----F-GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----C-cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 65 1 123579999999999999998875
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.9e-05 Score=85.35 Aligned_cols=118 Identities=13% Similarity=0.096 Sum_probs=78.2
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh-------------------CCcEEEeCCccchHHHHHHHHH
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-------------------RNILAVSFAPRDTHEAQVQFAL 260 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-------------------~~V~~vdisp~dls~a~v~~A~ 260 (544)
.....++.+.+++.... .+|||.+||+|.|...+++ ..+.++|+++....-+...+..
T Consensus 229 TP~~Vv~lmv~ll~p~~---~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l 305 (544)
T 3khk_A 229 TPKSIVTLIVEMLEPYK---GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI 305 (544)
T ss_dssp CCHHHHHHHHHHHCCCS---EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCC---CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH
Confidence 34556667777775432 2799999999988776532 2467777766655544444433
Q ss_pred HcCCCeEE--EEeccccCC-CCCCCeeEEEecccccc--ccc-----------------------C---hHHHHHHHHHc
Q 009069 261 ERGVPALI--GVMASIRLP-YPSRAFDMAHCSRCLIP--WGQ-----------------------Y---DGLYLIEVDRV 309 (544)
Q Consensus 261 ergv~~~~--~v~d~~~LP-fpd~sFDlV~~~~~l~h--~~~-----------------------d---~~~~L~Ei~RV 309 (544)
+++...+ ..+|....+ +++..||+|+++.-+.. |.. . .-.++..+.+.
T Consensus 306 -~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~ 384 (544)
T 3khk_A 306 -RGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYH 384 (544)
T ss_dssp -TTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHT
T ss_pred -hCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHH
Confidence 4544333 556655444 45689999999875542 110 0 02689999999
Q ss_pred ccCCcEEEEEeC
Q 009069 310 LRPGGYWILSGP 321 (544)
Q Consensus 310 LKPGG~Lvis~p 321 (544)
|||||++++..|
T Consensus 385 Lk~gGr~aiVlP 396 (544)
T 3khk_A 385 LAPTGSMALLLA 396 (544)
T ss_dssp EEEEEEEEEEEE
T ss_pred hccCceEEEEec
Confidence 999999999876
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.77 E-value=7.3e-05 Score=82.15 Aligned_cols=120 Identities=16% Similarity=0.139 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhccc--CCCCCEEEEeCCCCcHHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCC---CeEE
Q 009069 201 ADAYIDDIGKLINLK--DGSIRTAIDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERGV---PALI 268 (544)
Q Consensus 201 a~~~i~~L~~lL~l~--~g~~r~VLDIGCGtG~~a~~La~~-------~V~~vdisp~dls~a~v~~A~ergv---~~~~ 268 (544)
....++.+.+++... +..+.+|||.+||+|.+...++++ .+.++|+++....-+..++.. +|+ ...+
T Consensus 202 P~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l-~gi~~~~~~I 280 (542)
T 3lkd_A 202 PQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL-HGVPIENQFL 280 (542)
T ss_dssp CHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH-TTCCGGGEEE
T ss_pred cHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH-cCCCcCccce
Confidence 344666777776532 224558999999999887776543 478888877666555554443 454 3567
Q ss_pred EEeccccC--C-CCCCCeeEEEecccccc-ccc--------------------C-hHHHHHHHHHccc-CCcEEEEEeC
Q 009069 269 GVMASIRL--P-YPSRAFDMAHCSRCLIP-WGQ--------------------Y-DGLYLIEVDRVLR-PGGYWILSGP 321 (544)
Q Consensus 269 ~v~d~~~L--P-fpd~sFDlV~~~~~l~h-~~~--------------------d-~~~~L~Ei~RVLK-PGG~Lvis~p 321 (544)
..+|.... | +....||+|+++.-+.. |.. + .-.++..+.+.|+ |||++.+..|
T Consensus 281 ~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 77887665 3 45678999999754321 100 0 1248999999999 9999999876
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.7e-05 Score=79.03 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=51.0
Q ss_pred CEEEEeCCCCcHHHHHHhhC--CcEEEeCCc-------cchHHHHHHHHHHcCC--CeEEEEeccccC-C-CCC--CCee
Q 009069 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAP-------RDTHEAQVQFALERGV--PALIGVMASIRL-P-YPS--RAFD 284 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~V~~vdisp-------~dls~a~v~~A~ergv--~~~~~v~d~~~L-P-fpd--~sFD 284 (544)
.+|||+|||+|.++..|++. .|+++|+++ .++..+..+.. ..++ .+.+..+|...+ + +++ ++||
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~-~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD 163 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPE-TQDTAARINLHFGNAAEQMPALVKTQGKPD 163 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHH-HHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred CeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHH-hhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence 48999999999999999987 588888887 44443332221 1222 378888887653 3 444 7899
Q ss_pred EEEecccccc
Q 009069 285 MAHCSRCLIP 294 (544)
Q Consensus 285 lV~~~~~l~h 294 (544)
+|++...+.+
T Consensus 164 ~V~~dP~~~~ 173 (258)
T 2r6z_A 164 IVYLDPMYPE 173 (258)
T ss_dssp EEEECCCC--
T ss_pred EEEECCCCCC
Confidence 9999876644
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=82.51 Aligned_cols=115 Identities=12% Similarity=0.006 Sum_probs=74.6
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh---------------------------------------------
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS--------------------------------------------- 238 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~--------------------------------------------- 238 (544)
....+..+..... +..|||.+||+|.++..++.
T Consensus 178 LAa~ll~~~~~~~--~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 178 LAAAIVMRSGWQP--GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHHHHHTTCCT--TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhCCCC--CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 3344555544443 34799999999998776543
Q ss_pred -CCcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCC--CCCCCeeEEEeccccccc-ccCh--HHH---HHHHH
Q 009069 239 -RNILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLP--YPSRAFDMAHCSRCLIPW-GQYD--GLY---LIEVD 307 (544)
Q Consensus 239 -~~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LP--fpd~sFDlV~~~~~l~h~-~~d~--~~~---L~Ei~ 307 (544)
..+.++|+++.++..+..+ +...|+. +.+.+.|...+. ..+++||+|+++.-+..- .... ..+ |.++.
T Consensus 256 ~~~i~G~Did~~av~~A~~N-~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l 334 (703)
T 3v97_A 256 SSHFYGSDSDARVIQRARTN-ARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM 334 (703)
T ss_dssp CCCEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence 2588999988777655543 4455664 788889988774 334589999999743211 1111 233 44555
Q ss_pred HcccCCcEEEEEeC
Q 009069 308 RVLRPGGYWILSGP 321 (544)
Q Consensus 308 RVLKPGG~Lvis~p 321 (544)
+.+.|||.+++..+
T Consensus 335 k~~~~g~~~~ilt~ 348 (703)
T 3v97_A 335 KNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHCTTCEEEEEES
T ss_pred HhhCCCCeEEEEeC
Confidence 55668999999754
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.8e-05 Score=77.42 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--C----cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N----ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~----V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
..++.|.+.+....+. +|||||||+|.++..|+++ . ++++|+++.++..+... + ..++.+..+|+..+
T Consensus 29 ~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~-~---~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGE--RMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR-F---GELLELHAGDALTF 102 (279)
T ss_dssp HHHHHHHHHHCCCTTC--EEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH-H---GGGEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCcC--EEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh-c---CCCcEEEECChhcC
Confidence 4566777777665544 8999999999999999875 4 89999988766555443 2 34678899999988
Q ss_pred CCCCC------CeeEEEecc
Q 009069 277 PYPSR------AFDMAHCSR 290 (544)
Q Consensus 277 Pfpd~------sFDlV~~~~ 290 (544)
++++- ..+.|+++.
T Consensus 103 ~~~~~~~~~~~~~~~vv~Nl 122 (279)
T 3uzu_A 103 DFGSIARPGDEPSLRIIGNL 122 (279)
T ss_dssp CGGGGSCSSSSCCEEEEEEC
T ss_pred ChhHhcccccCCceEEEEcc
Confidence 87542 234566655
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.6e-05 Score=83.05 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=68.4
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC--------------------CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEec---c
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR--------------------NILAVSFAPRDTHEAQVQFALE-RGVPALIGVMA---S 273 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--------------------~V~~vdisp~dls~a~v~~A~e-rgv~~~~~v~d---~ 273 (544)
..-+|+|+||++|..+..+... .|..-|+..+|.......+... ...+..|..+. .
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3456999999999655443322 3556788888886544332210 00022343332 3
Q ss_pred ccCCCCCCCeeEEEecccccccccCh---------------------------------HHHHHHHHHcccCCcEEEEEe
Q 009069 274 IRLPYPSRAFDMAHCSRCLIPWGQYD---------------------------------GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 274 ~~LPfpd~sFDlV~~~~~l~h~~~d~---------------------------------~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
....||+++||+|+++.++ ||..+. ..+|+-..+.|+|||.++++.
T Consensus 131 y~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3466899999999999999 786542 134888899999999999985
Q ss_pred C
Q 009069 321 P 321 (544)
Q Consensus 321 p 321 (544)
.
T Consensus 210 ~ 210 (359)
T 1m6e_X 210 L 210 (359)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.68 E-value=3.7e-05 Score=77.39 Aligned_cols=121 Identities=14% Similarity=0.060 Sum_probs=71.4
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEec
Q 009069 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMA 272 (544)
Q Consensus 197 F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d 272 (544)
|...+...+.+|.+...+.++ .+|||+|||.|.|+.+++++ .+.++|+..... ...+.. ...+..+.....+
T Consensus 71 YrSRAAfKL~ei~eK~~Lk~~--~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~-~~pi~~-~~~g~~ii~~~~~ 146 (282)
T 3gcz_A 71 AVSRGSAKLRWMEERGYVKPT--GIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGH-EKPIMR-TTLGWNLIRFKDK 146 (282)
T ss_dssp CSSTHHHHHHHHHHTTSCCCC--EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTS-CCCCCC-CBTTGGGEEEECS
T ss_pred EecHHHHHHHHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcc-cccccc-ccCCCceEEeeCC
Confidence 344555556666666545544 38999999999999998864 356667754211 000000 0012223333322
Q ss_pred cccCCCCCCCeeEEEeccccc---ccccCh--HHHHHHHHHcccCC--cEEEEEeC
Q 009069 273 SIRLPYPSRAFDMAHCSRCLI---PWGQYD--GLYLIEVDRVLRPG--GYWILSGP 321 (544)
Q Consensus 273 ~~~LPfpd~sFDlV~~~~~l~---h~~~d~--~~~L~Ei~RVLKPG--G~Lvis~p 321 (544)
.....++.+.+|+|+|-.+.. ++.+.. ..+|.-+.++|+|| |.|++-..
T Consensus 147 ~dv~~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 147 TDVFNMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp CCGGGSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred cchhhcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 222345678899999987764 011111 13566678899999 99999864
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00022 Score=81.25 Aligned_cols=104 Identities=14% Similarity=0.047 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC-------CcEEEeCCccchHHHHHHHHHH-----cCCCe-EEEEeccccC-CCCCCCe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALE-----RGVPA-LIGVMASIRL-PYPSRAF 283 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-------~V~~vdisp~dls~a~v~~A~e-----rgv~~-~~~v~d~~~L-Pfpd~sF 283 (544)
.+.+|||.|||+|.++..++++ .+.++|+++..+..+..+.... .++.. .+...+.... +.....|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 3458999999999999988764 3689999887665553232221 23322 3443333332 2345789
Q ss_pred eEEEecccccccccC----------------------------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 284 DMAHCSRCLIPWGQY----------------------------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 284 DlV~~~~~l~h~~~d----------------------------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|+++.-+...... ...++..+.+.|+|||++++..|
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 999998855221110 13467889999999999999987
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0013 Score=68.74 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=74.6
Q ss_pred CCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
.+.+|||+||++|.|+..|++++ |+++|+.+.+. .. .....+.+...|+.....+.+.||+|+|-.+.
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~--~l-----~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~--- 280 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQ--SL-----MDTGQVTWLREDGFKFRPTRSNISWMVCDMVE--- 280 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCH--HH-----HTTTCEEEECSCTTTCCCCSSCEEEEEECCSS---
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcCh--hh-----ccCCCeEEEeCccccccCCCCCcCEEEEcCCC---
Confidence 35599999999999999999986 56666544322 11 12346788888888877777889999997654
Q ss_pred ccChHHHHHHHHHcccCC---cEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcce
Q 009069 296 GQYDGLYLIEVDRVLRPG---GYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPG---G~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~ 356 (544)
.+...+.-+.+.|..| +.++..-.+.. ...+.+......+.......++.
T Consensus 281 --~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk---------~~~~~l~~~~~~i~~~l~~~g~~ 333 (375)
T 4auk_A 281 --KPAKVAALMAQWLVNGWCRETIFNLKLPMK---------KRYEEVSHNLAYIQAQLDEHGIN 333 (375)
T ss_dssp --CHHHHHHHHHHHHHTTSCSEEEEEEECCSS---------SHHHHHHHHHHHHHHHHHHTTCC
T ss_pred --ChHHhHHHHHHHHhccccceEEEEEEeccc---------chHHHHHHHHHHHHHHHHhcCcc
Confidence 3445555555555544 44433333221 23344444455566666666654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=5.7e-05 Score=84.26 Aligned_cols=97 Identities=11% Similarity=0.014 Sum_probs=62.8
Q ss_pred CCCEEEEeCCCCcHH---HHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEE
Q 009069 218 SIRTAIDTGCGVASW---GAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAH 287 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~---a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~ 287 (544)
....|||||||+|.+ +...+++ .|.+++-++... ...+...+++. .+.++.++.+.+..| +.+|+|+
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~--~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIV 433 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV--VTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIV 433 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH--HHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH--HHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEE
Confidence 345799999999977 4443333 467777766333 33334444443 588888898887766 5799999
Q ss_pred ecccccc-cccChHHHHHHHHHcccCCcEEE
Q 009069 288 CSRCLIP-WGQYDGLYLIEVDRVLRPGGYWI 317 (544)
Q Consensus 288 ~~~~l~h-~~~d~~~~L~Ei~RVLKPGG~Lv 317 (544)
+-..-.. ..+.....+....|.|||||.++
T Consensus 434 SEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 434 SELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 8322111 11112457778899999999864
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.65 E-value=2.8e-05 Score=77.17 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcC---CCeEEEEeccccC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRL 276 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--V~~vdisp~dls~a~v~~A~erg---v~~~~~v~d~~~L 276 (544)
..++.+.+.+....+. +|||||||+|.++. +... . ++++|+++.++ +.+.++. .++.+..+|+..+
T Consensus 8 ~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~-----~~a~~~~~~~~~v~~i~~D~~~~ 79 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQ--AMVEIGPGLAALTE-PVGERLDQLTVIELDRDLA-----ARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHCCCTTC--CEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHH-----HHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHHHHhcCCCCcC--EEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHH-----HHHHHHhccCCceEEEECchhhC
Confidence 3556677777655444 89999999999999 7543 4 88888866555 3443332 2578888999888
Q ss_pred CCCC-----CCeeEEEecccc
Q 009069 277 PYPS-----RAFDMAHCSRCL 292 (544)
Q Consensus 277 Pfpd-----~sFDlV~~~~~l 292 (544)
++++ +..|.|+++.-+
T Consensus 80 ~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 80 NFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp CHHHHHHHHTSCEEEEEECCT
T ss_pred CHHHhhcccCCceEEEECCCC
Confidence 7653 235788887644
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00021 Score=70.63 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHc-CCCeEEEEeccccCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLP 277 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~LP 277 (544)
...++.+.+.+....+. +|||||||+|.++..|++++ ++++|+++. +++.+.++ ..++.+..+|+..++
T Consensus 17 ~~i~~~iv~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~-----~~~~~~~~~~~~v~~i~~D~~~~~ 89 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGN--TVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE-----MVENLKSIGDERLEVINEDASKFP 89 (249)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEEESCHHHHHHHHTTSCCSEEEEECCCHH-----HHHHHTTSCCTTEEEECSCTTTCC
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcCchHHHHHHHHHcCCCeEEEEECCHH-----HHHHHHhccCCCeEEEEcchhhCC
Confidence 44667777777655544 89999999999999999874 666777554 44444443 235788899998888
Q ss_pred CCCCC-eeEEEecc
Q 009069 278 YPSRA-FDMAHCSR 290 (544)
Q Consensus 278 fpd~s-FDlV~~~~ 290 (544)
+++.. ...|+++.
T Consensus 90 ~~~~~~~~~vv~Nl 103 (249)
T 3ftd_A 90 FCSLGKELKVVGNL 103 (249)
T ss_dssp GGGSCSSEEEEEEC
T ss_pred hhHccCCcEEEEEC
Confidence 76421 23566655
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00052 Score=69.71 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEecccc-CCCCCCCeeE
Q 009069 216 DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE-----RGVPALIGVMASIR-LPYPSRAFDM 285 (544)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e-----rgv~~~~~v~d~~~-LPfpd~sFDl 285 (544)
.+..++||=||.|.|..++.+++. .+++++|++.-+..+..-+... ....+.+.+.|... +.-..++||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 344568999999999999999875 4788888775554333222211 12467888888544 3345678999
Q ss_pred EEecccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 286 AHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 286 V~~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|+.-. ..+.... ...+++.+.|+|+|||.++...
T Consensus 161 Ii~D~-~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 161 IISDC-TDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEESC-CCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeC-CCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 99732 2222111 1589999999999999999864
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=5.6e-05 Score=77.06 Aligned_cols=84 Identities=8% Similarity=0.098 Sum_probs=57.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCC-
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY- 278 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPf- 278 (544)
.++++.+.+...++. +|||+|||+|.++..++++ .++++|+++.++..+..+.. ..+..+.+..+|...++.
T Consensus 14 Ll~e~l~~L~~~~g~--~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~-~~g~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 14 MVREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK-EFSDRVSLFKVSYREADFL 90 (301)
T ss_dssp THHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG-GGTTTEEEEECCGGGHHHH
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHH
Confidence 345556666555444 8999999999999999875 47788887766654443332 223468888888877651
Q ss_pred -C---CCCeeEEEecc
Q 009069 279 -P---SRAFDMAHCSR 290 (544)
Q Consensus 279 -p---d~sFDlV~~~~ 290 (544)
. ..+||.|++..
T Consensus 91 l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 91 LKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHTTCSCEEEEEEEC
T ss_pred HHhcCCCCCCEEEEcC
Confidence 1 15799999754
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00014 Score=81.59 Aligned_cols=96 Identities=17% Similarity=0.037 Sum_probs=63.0
Q ss_pred CCEEEEeCCCCcHHHH---HHh---h---------C--CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCCCC
Q 009069 219 IRTAIDTGCGVASWGA---YLM---S---------R--NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYP 279 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~---~La---~---------~--~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LPfp 279 (544)
...|||||||+|.+.. ..+ . . .|.+++-++......+.... ++ -.+.++.++.+.+..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~--Ng~~d~VtVI~gd~eev~lp 487 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV--RTWKRRVTIIESDMRSLPGI 487 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH--HTTTTCSEEEESCGGGHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh--cCCCCeEEEEeCchhhcccc
Confidence 3479999999997742 221 2 1 67788876644432332222 33 3478888888887663
Q ss_pred -----CCCeeEEEecccccccccCh--HHHHHHHHHcccCCcEEE
Q 009069 280 -----SRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWI 317 (544)
Q Consensus 280 -----d~sFDlV~~~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lv 317 (544)
.+..|+|++-..- .+..+. ..+|..+.|.|||||.++
T Consensus 488 ~~~~~~ekVDIIVSElmG-sfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 488 AKDRGFEQPDIIVSELLG-SFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHTTCCCCSEEEECCCB-TTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cccCCCCcccEEEEeccc-cccchhccHHHHHHHHHhCCCCcEEE
Confidence 5789999995432 222212 478888899999999764
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0001 Score=73.53 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=64.3
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHH--HHHHHHHHc----C---CCeEEEEecccc
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHE--AQVQFALER----G---VPALIGVMASIR 275 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~--a~v~~A~er----g---v~~~~~v~d~~~ 275 (544)
.+.+.+.+..+...+|||+|||+|..+..++.+ .|+++|+++....- ..++.+..+ + .++.+..+|...
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~ 156 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence 345555555542248999999999999999876 57888887743221 112222211 1 146788888655
Q ss_pred -CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCc
Q 009069 276 -LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGG 314 (544)
Q Consensus 276 -LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG 314 (544)
++.....||+|++...+.+ .. ...++++..++||+.+
T Consensus 157 ~L~~~~~~fDvV~lDP~y~~-~~-~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 157 ALTDITPRPQVVYLDPMFPH-KQ-KSALVKKEMRVFQSLV 194 (258)
T ss_dssp HSTTCSSCCSEEEECCCCCC-CC-C-----HHHHHHHHHS
T ss_pred HHHhCcccCCEEEEcCCCCC-cc-cchHHHHHHHHHHHhh
Confidence 4433347999999887733 32 2356777778888765
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00024 Score=71.94 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=69.2
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEec
Q 009069 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMA 272 (544)
Q Consensus 197 F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d 272 (544)
|...+...+.++.+. .+- ..+.+|||+||++|.|+..++++ .+.++|+...+...... ....+.++.....+
T Consensus 62 yrSRaa~KL~ei~ek-~l~-~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~iv~~~~~ 137 (300)
T 3eld_A 62 SVSRGAAKIRWLHER-GYL-RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWNIVKFKDK 137 (300)
T ss_dssp CSSTTHHHHHHHHHH-TSC-CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEECS
T ss_pred ccchHHHHHHHHHHh-CCC-CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCceEEeecC
Confidence 444445555556555 432 24568999999999999999985 35566665321100000 00001122222222
Q ss_pred cccCCCCCCCeeEEEecccccccccCh-------HHHHHHHHHcccCC-cEEEEEeC
Q 009069 273 SIRLPYPSRAFDMAHCSRCLIPWGQYD-------GLYLIEVDRVLRPG-GYWILSGP 321 (544)
Q Consensus 273 ~~~LPfpd~sFDlV~~~~~l~h~~~d~-------~~~L~Ei~RVLKPG-G~Lvis~p 321 (544)
..-.-+..+.+|+|+|..+-. .... ..+|.-+.++|+|| |.|++-..
T Consensus 138 ~di~~l~~~~~DlVlsD~APn--sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 138 SNVFTMPTEPSDTLLCDIGES--SSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp CCTTTSCCCCCSEEEECCCCC--CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred ceeeecCCCCcCEEeecCcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 222334567899999977653 2211 24566678899999 99999864
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0039 Score=62.94 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=80.8
Q ss_pred CEEEEeCCCCcHHHHHHh---------hCCcEEEeCCcc--------------------------chHHHHHHHHHHcCC
Q 009069 220 RTAIDTGCGVASWGAYLM---------SRNILAVSFAPR--------------------------DTHEAQVQFALERGV 264 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La---------~~~V~~vdisp~--------------------------dls~a~v~~A~ergv 264 (544)
..||++|+..|..+..|+ .+.++++|.... .+..+. +...+.++
T Consensus 108 g~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar-~n~~~~gl 186 (282)
T 2wk1_A 108 GDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVR-RNFRNYDL 186 (282)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHH-HHHHHTTC
T ss_pred CcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHH-HHHHHcCC
Confidence 379999999997776654 235778885321 111122 22223343
Q ss_pred ---CeEEEEecccc-CC-CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhh
Q 009069 265 ---PALIGVMASIR-LP-YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDL 339 (544)
Q Consensus 265 ---~~~~~v~d~~~-LP-fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L 339 (544)
.+.+..+++.. +| +++++||+|+.-.- ..+....+|..+...|+|||++++... .| | ..
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~Le~~~p~L~pGGiIv~DD~--~~------~---~G-- 250 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTLTNLYPKVSVGGYVIVDDY--MM------C---PP-- 250 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHHHHHGGGEEEEEEEEESSC--TT------C---HH--
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHHHHHHhhcCCCEEEEEcCC--CC------C---HH--
Confidence 47888887533 44 44678999997542 211125789999999999999988754 11 1 11
Q ss_pred HhhhhhHHHHHHhhcceeee--eeccEEEEecc
Q 009069 340 KSEQNGIETIARSLCWKKLI--QKKDLAIWQKP 370 (544)
Q Consensus 340 ~~~~~~ie~la~~l~w~~v~--~~~~~aIwqKP 370 (544)
..+.+.++.+..+++... -....+.|+|+
T Consensus 251 --~~~Av~Ef~~~~~i~~~i~~~~~~~v~~rk~ 281 (282)
T 2wk1_A 251 --CKDAVDEYRAKFDIADELITIDRDGVYWQRT 281 (282)
T ss_dssp --HHHHHHHHHHHTTCCSCCEECSSSCEEEECC
T ss_pred --HHHHHHHHHHhcCCceEEEEecCEEEEEEeC
Confidence 234566666666665443 33346888885
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00051 Score=68.34 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=58.7
Q ss_pred CCCEEEEeCCCCcHHHHHHhh----------------CCcEEEeCCc---cchHHH----------HHHHHHH-------
Q 009069 218 SIRTAIDTGCGVASWGAYLMS----------------RNILAVSFAP---RDTHEA----------QVQFALE------- 261 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~----------------~~V~~vdisp---~dls~a----------~v~~A~e------- 261 (544)
...+|||||+|+|..+..+++ ..+++++..| .++..+ ..+....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 345899999999976655432 1456667665 222211 1111111
Q ss_pred -------c-CCCeEEEEecccc-CCCCC----CCeeEEEeccccccc-ccC--hHHHHHHHHHcccCCcEEEE
Q 009069 262 -------R-GVPALIGVMASIR-LPYPS----RAFDMAHCSRCLIPW-GQY--DGLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 262 -------r-gv~~~~~v~d~~~-LPfpd----~sFDlV~~~~~l~h~-~~d--~~~~L~Ei~RVLKPGG~Lvi 318 (544)
. .+.+.+..+|+.. ++..+ ..||+|+.-. +.+- .++ ...+|.++.|+|||||.|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 0 1245567777654 44322 2799999732 2111 111 26899999999999999985
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00023 Score=75.60 Aligned_cols=104 Identities=13% Similarity=-0.085 Sum_probs=66.0
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHH-cCC-CeEEEEeccccC-CC-CCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE-RGV-PALIGVMASIRL-PY-PSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~e-rgv-~~~~~v~d~~~L-Pf-pd~sFDlV~~~~~l 292 (544)
+.+|||+|||+|..+..|++. .|+++|+++.++..+..+.... .++ ++.+..+|.... +. ++++||+|++....
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPPr 173 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPAR 173 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCEE
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCCC
Confidence 458999999999999999887 4788888887776555544332 044 578888887663 32 34689999995432
Q ss_pred cc-------cccChHHHHHHHHHccc-CCcEEEEEeCC
Q 009069 293 IP-------WGQYDGLYLIEVDRVLR-PGGYWILSGPP 322 (544)
Q Consensus 293 ~h-------~~~d~~~~L~Ei~RVLK-PGG~Lvis~pp 322 (544)
.. ..++...-+.++.+.|+ .+..+++..+|
T Consensus 174 r~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP 211 (410)
T 3ll7_A 174 RSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSP 211 (410)
T ss_dssp C-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECT
T ss_pred cCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCC
Confidence 11 11111223555666443 45566666544
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00087 Score=61.37 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=61.4
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCc-HHHHHHhh-CC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVA-SWGAYLMS-RN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG-~~a~~La~-~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
.+.|.+++...-..+.+|||||||.| ..+.+|++ .+ |+++|+++..+. +...|... |..+
T Consensus 22 ~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------------~v~dDiF~-P~~~ 85 (153)
T 2k4m_A 22 WNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------------IVRDDITS-PRME 85 (153)
T ss_dssp HHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------------EECCCSSS-CCHH
T ss_pred HHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------------eEEccCCC-Cccc
Confidence 45566666533333448999999999 69999997 65 788899886653 45555544 4332
Q ss_pred --CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 281 --RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 281 --~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
..||+|++.+ +- .+....+.++.+.+ |.-|+|.
T Consensus 86 ~Y~~~DLIYsir---PP-~El~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 86 IYRGAALIYSIR---PP-AEIHSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp HHTTEEEEEEES---CC-TTTHHHHHHHHHHH--TCEEEEE
T ss_pred ccCCcCEEEEcC---CC-HHHHHHHHHHHHHc--CCCEEEE
Confidence 4799999866 22 23455666666543 5667776
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0021 Score=70.32 Aligned_cols=120 Identities=16% Similarity=0.155 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh-----------------CCcEEEeCCccchHHHHHHHHHHc
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-----------------RNILAVSFAPRDTHEAQVQFALER 262 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-----------------~~V~~vdisp~dls~a~v~~A~er 262 (544)
.....++.+.+++....+. +|+|-+||+|+|.....+ ..+.+.++.+....-+...+....
T Consensus 201 TP~~Vv~lmv~l~~p~~~~--~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg 278 (530)
T 3ufb_A 201 TPRPVVRFMVEVMDPQLGE--SVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG 278 (530)
T ss_dssp CCHHHHHHHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHhhccCCCC--EEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC
Confidence 4456777888888655544 899999999998765543 247888887765555554444432
Q ss_pred CCCeEEEEeccccCCC----CCCCeeEEEeccccccccc--------------Ch-HHHHHHHHHccc-------CCcEE
Q 009069 263 GVPALIGVMASIRLPY----PSRAFDMAHCSRCLIPWGQ--------------YD-GLYLIEVDRVLR-------PGGYW 316 (544)
Q Consensus 263 gv~~~~~v~d~~~LPf----pd~sFDlV~~~~~l~h~~~--------------d~-~~~L~Ei~RVLK-------PGG~L 316 (544)
.....+...|....|+ ....||+|+++.-+..-.. +. ..++..+.+.|| |||++
T Consensus 279 ~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~ 358 (530)
T 3ufb_A 279 LEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRA 358 (530)
T ss_dssp CSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEE
T ss_pred CccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceE
Confidence 2234566666655543 2357999999885521100 00 246777778776 79999
Q ss_pred EEEeC
Q 009069 317 ILSGP 321 (544)
Q Consensus 317 vis~p 321 (544)
.++.|
T Consensus 359 avVlP 363 (530)
T 3ufb_A 359 AVVVP 363 (530)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99977
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0036 Score=60.15 Aligned_cols=91 Identities=9% Similarity=-0.044 Sum_probs=58.8
Q ss_pred CEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEecccc---------------CC
Q 009069 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV----PALIGVMASIR---------------LP 277 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv----~~~~~v~d~~~---------------LP 277 (544)
++|||+||| ..+..|++. .+++++.++.....+...++ +.+. .+.+..+++.. ++
T Consensus 32 ~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~-~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~ 108 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLA-ANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP 108 (202)
T ss_dssp SEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHH-HSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred CEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence 489999986 456666653 57778886654444333333 4453 46677777432 22
Q ss_pred --------C-CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 278 --------Y-PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 278 --------f-pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
. ..++||+|+.-.- ....++..+.+.|+|||.+++.
T Consensus 109 ~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 109 DYPLAVWRTEGFRHPDVVLVDGR------FRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp HHHHGGGGCTTCCCCSEEEECSS------SHHHHHHHHHHHCSSCEEEEET
T ss_pred HHhhhhhccccCCCCCEEEEeCC------CchhHHHHHHHhcCCCeEEEEe
Confidence 1 2378999997552 1246777788999999999665
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.006 Score=60.69 Aligned_cols=117 Identities=16% Similarity=0.115 Sum_probs=70.1
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHH-cCCCe-EEE
Q 009069 196 MFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NI---LAVSFAPRDTHEAQVQFALE-RGVPA-LIG 269 (544)
Q Consensus 196 ~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~V---~~vdisp~dls~a~v~~A~e-rgv~~-~~~ 269 (544)
.|...+...+.+|.+..-++++ .+|||+||+.|+|+.+.+++ ++ .+..+.. |++..- .... .|+.+ .+.
T Consensus 53 ~yRSRAayKL~EIdeK~likpg--~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~-D~~~~P--~~~~~~Gv~~i~~~ 127 (269)
T 2px2_A 53 HPVSRGTAKLRWLVERRFVQPI--GKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGG-PGHEEP--MLMQSYGWNIVTMK 127 (269)
T ss_dssp CCSSTHHHHHHHHHHTTSCCCC--EEEEEETCTTSHHHHHHTTSTTEEEEEEECCCS-TTSCCC--CCCCSTTGGGEEEE
T ss_pred CcccHHHHHHHHHHHcCCCCCC--CEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcc-ccccCC--CcccCCCceEEEee
Confidence 3566666677777776534444 48999999999999999987 23 3444432 311000 0000 12222 333
Q ss_pred Ee-ccccCCCCCCCeeEEEecccccccccCh-------HHHHHHHHHcccCCc-EEEEEeC
Q 009069 270 VM-ASIRLPYPSRAFDMAHCSRCLIPWGQYD-------GLYLIEVDRVLRPGG-YWILSGP 321 (544)
Q Consensus 270 v~-d~~~LPfpd~sFDlV~~~~~l~h~~~d~-------~~~L~Ei~RVLKPGG-~Lvis~p 321 (544)
.+ |...+ ....+|+|+|-.+-. .... ..+|.-+.++|+||| .|++-..
T Consensus 128 ~G~Df~~~--~~~~~DvVLSDMAPn--SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 128 SGVDVFYK--PSEISDTLLCDIGES--SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp CSCCGGGS--CCCCCSEEEECCCCC--CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred ccCCccCC--CCCCCCEEEeCCCCC--CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 34 66654 356799999955432 2111 124666678999999 9998764
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0027 Score=66.22 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=69.5
Q ss_pred HHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-------CCeEEEEeccccCC-
Q 009069 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-------VPALIGVMASIRLP- 277 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg-------v~~~~~v~d~~~LP- 277 (544)
.++...++. +|||+.+|.|.=+..|++. .+++.|+++.-+.... +...+.+ ..+.+...|...++
T Consensus 142 ~~L~~~pg~--~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~-~~l~r~~~~~~~~~~~v~v~~~D~~~~~~ 218 (359)
T 4fzv_A 142 LALGLQPGD--IVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQ-KILHSYVPEEIRDGNQVRVTSWDGRKWGE 218 (359)
T ss_dssp HHHCCCTTE--EEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHH-HHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred HHhCCCCCC--EEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHH-HHHHHhhhhhhccCCceEEEeCchhhcch
Confidence 344445544 9999999999888888775 4777888664332222 2222222 24666767766554
Q ss_pred CCCCCeeEEEe----ccc---ccc--------cccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHC----SRC---LIP--------WGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~----~~~---l~h--------~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+.||.|++ +.. ... +... +..+|..+.+.|||||+|+.++-
T Consensus 219 ~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC 285 (359)
T 4fzv_A 219 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTC 285 (359)
T ss_dssp HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence 34678999994 331 111 1110 13678889999999999999974
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.013 Score=59.31 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=71.2
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEe
Q 009069 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVM 271 (544)
Q Consensus 197 F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~ 271 (544)
|...+...+.++.+...+..+. +||||||++|.|+.+.+.+ .|.++|+-.....+.+. ...-+- -+.+...
T Consensus 75 y~SR~~~KL~ei~~~~~l~~~~--~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~--~~ql~w~lV~~~~~ 150 (321)
T 3lkz_A 75 PVSRGTAKLRWLVERRFLEPVG--KVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQL--VQSYGWNIVTMKSG 150 (321)
T ss_dssp CSSTHHHHHHHHHHTTSCCCCE--EEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCC--CCBTTGGGEEEECS
T ss_pred ccchHHHHHHHHHHhcCCCCCC--EEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcch--hhhcCCcceEEEec
Confidence 4555555666666665555444 8999999999999988775 47788886542210000 000011 1445544
Q ss_pred -ccccCCCCCCCeeEEEecccccccccCh-------HHHHHHHHHcccCC-cEEEEEeC
Q 009069 272 -ASIRLPYPSRAFDMAHCSRCLIPWGQYD-------GLYLIEVDRVLRPG-GYWILSGP 321 (544)
Q Consensus 272 -d~~~LPfpd~sFDlV~~~~~l~h~~~d~-------~~~L~Ei~RVLKPG-G~Lvis~p 321 (544)
|...++- ..+|+|+|-.. .-...+ -.+|.-+.+.|++| |-|++-..
T Consensus 151 ~Dv~~l~~--~~~D~ivcDig--eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl 205 (321)
T 3lkz_A 151 VDVFYRPS--ECCDTLLCDIG--ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVL 205 (321)
T ss_dssp CCTTSSCC--CCCSEEEECCC--CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred cCHhhCCC--CCCCEEEEECc--cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEc
Confidence 5555553 56999999655 222222 13566667889999 99998764
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0046 Score=60.86 Aligned_cols=116 Identities=15% Similarity=0.073 Sum_probs=73.0
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEe
Q 009069 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVM 271 (544)
Q Consensus 197 F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~ 271 (544)
|.+.+...+.++.+...+.++. +|||+||++|.|+.+.+.+ .|.++|+-....++.+. ...-| ..+.|...
T Consensus 59 yrSRa~~KL~ei~ek~~l~~g~--~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~--~~s~gwn~v~fk~g 134 (267)
T 3p8z_A 59 AVSRGSAKLQWFVERNMVIPEG--RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVP--MSTYGWNIVKLMSG 134 (267)
T ss_dssp CSSTHHHHHHHHHHTTSSCCCE--EEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC--CCCTTTTSEEEECS
T ss_pred ccchHHHHHHHHHHhcCCCCCC--EEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcch--hhhcCcCceEEEec
Confidence 4555566666676666555444 8999999999999988775 47788886643311110 00112 24667766
Q ss_pred -ccccCCCCCCCeeEEEecccccccccCh-------HHHHHHHHHcccCCcEEEEEeC
Q 009069 272 -ASIRLPYPSRAFDMAHCSRCLIPWGQYD-------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 272 -d~~~LPfpd~sFDlV~~~~~l~h~~~d~-------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|...++- ..+|.|+|-..= -...+ -.+|.-+.+.|++ |-|++-..
T Consensus 135 vDv~~~~~--~~~DtllcDIge--Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl 187 (267)
T 3p8z_A 135 KDVFYLPP--EKCDTLLCDIGE--SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVL 187 (267)
T ss_dssp CCGGGCCC--CCCSEEEECCCC--CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEES
T ss_pred cceeecCC--ccccEEEEecCC--CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEc
Confidence 6555553 569999995542 22222 1356666788998 78888653
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0058 Score=64.12 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=63.2
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC-------------CCeEEEEeccccC----C
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG-------------VPALIGVMASIRL----P 277 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~erg-------------v~~~~~v~d~~~L----P 277 (544)
..++||=||.|.|..++++++. .+++++|++. .++.+++.. ..+.+.+.|.... .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~-----VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~ 279 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQM-----VIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA 279 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHH-----HHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHH-----HHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh
Confidence 4578999999999999999875 4677777554 344444321 1245666664321 1
Q ss_pred CCCCCeeEEEecccccccccCh---------HHHHHHHHHcccCCcEEEEEe
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYD---------GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~---------~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
-..+.||+|+.-..-.....++ ..+++.+.++|+|||.++..+
T Consensus 280 ~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 280 KEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp HHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 1346799999742110111111 467888999999999999864
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0048 Score=78.76 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC-CCCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-PYPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L-Pfpd~sFDlV~~ 288 (544)
..+||+||.|+|..+..+.+. .++.+|+++.....++.++.. ..+.....|.... ++...+||+|++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---~di~~~~~d~~~~~~~~~~~ydlvia 1317 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---LHVTQGQWDPANPAPGSLGKADLLVC 1317 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---HTEEEECCCSSCCCC-----CCEEEE
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---cccccccccccccccCCCCceeEEEE
Confidence 347999999999655443321 467778887655444444432 1223222233232 345678999999
Q ss_pred cccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.++ |-..+....|.++.++|||||++++...
T Consensus 1318 ~~vl-~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1318 NCAL-ATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp ECC---------------------CCEEEEEEC
T ss_pred cccc-cccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 9988 5555567899999999999999998753
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.046 Score=54.82 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHH
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQF 258 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~ 258 (544)
...++.+.+... .. +..|||++||+|+.+..+++. .++++|+++..+..+..++
T Consensus 222 ~~l~~~~i~~~~-~~--~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~ 277 (297)
T 2zig_A 222 LELAERLVRMFS-FV--GDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERF 277 (297)
T ss_dssp HHHHHHHHHHHC-CT--TCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CC--CCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 445556665554 23 448999999999999888876 5777788776655444443
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.062 Score=54.13 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=53.0
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-----
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----- 277 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP----- 277 (544)
++++.+.+...++. .+||.+||.|..+..|+++ .++++|.++..+..+.. + .. ..+.+...+...++
T Consensus 11 l~e~le~L~~~~gg--~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L--~~-~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 11 YQEALDLLAVRPGG--VYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-L--HL-PGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp HHHHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-T--CC-TTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHhhCCCCCC--EEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-h--cc-CCEEEEECCcchHHHHHHH
Confidence 45566666655544 8999999999999999987 46777776655533332 1 11 35777777765553
Q ss_pred CCCCCeeEEEecc
Q 009069 278 YPSRAFDMAHCSR 290 (544)
Q Consensus 278 fpd~sFDlV~~~~ 290 (544)
...++||.|++..
T Consensus 85 ~g~~~vDgIL~DL 97 (285)
T 1wg8_A 85 LGVERVDGILADL 97 (285)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCcCEEEeCC
Confidence 1235799999744
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.16 Score=51.47 Aligned_cols=102 Identities=8% Similarity=-0.043 Sum_probs=61.0
Q ss_pred HHHHHhc---ccCCCCCEEEEeCC------CCcHHHH-HHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc
Q 009069 207 DIGKLIN---LKDGSIRTAIDTGC------GVASWGA-YLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASI 274 (544)
Q Consensus 207 ~L~~lL~---l~~g~~r~VLDIGC------GtG~~a~-~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~ 274 (544)
+|-+++. +..+.+.+|||+|+ -.|++.. .+.+.+ ++.+|+.+... ..+ .+.++|..
T Consensus 95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----------da~-~~IqGD~~ 162 (344)
T 3r24_A 95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----------DAD-STLIGDCA 162 (344)
T ss_dssp HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------SSS-EEEESCGG
T ss_pred HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------CCC-eEEEcccc
Confidence 5666663 44556779999997 5566432 233343 55566655322 112 44677754
Q ss_pred cCCCCCCCeeEEEeccccc---cc-c-----cCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 275 RLPYPSRAFDMAHCSRCLI---PW-G-----QYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LPfpd~sFDlV~~~~~l~---h~-~-----~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+. ..+.||+|+|-.+-. +. . ... +.++.-+.++|+|||.|++-..
T Consensus 163 ~~~-~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 163 TVH-TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp GEE-ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccc-cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence 433 347899999833210 00 0 112 4666667889999999999865
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.10 E-value=0.055 Score=54.26 Aligned_cols=99 Identities=20% Similarity=0.175 Sum_probs=56.6
Q ss_pred CeEEEEecccc-CC-CCCCCeeEEEeccccccccc-------------------ChHHHHHHHHHcccCCcEEEEEeCCC
Q 009069 265 PALIGVMASIR-LP-YPSRAFDMAHCSRCLIPWGQ-------------------YDGLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 265 ~~~~~v~d~~~-LP-fpd~sFDlV~~~~~l~h~~~-------------------d~~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
...+..+|... +. +++++||+|+++.-+..... ....++.++.|+|||||.+++.....
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 35677777655 33 56789999999875532110 01246789999999999999986421
Q ss_pred CccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeeccEEEEeccC
Q 009069 324 NWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPT 371 (544)
Q Consensus 324 ~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~~aIwqKP~ 371 (544)
....... ...........+..+++..+|.... ..||.|+.
T Consensus 101 ~~~~~~~----g~~~~~~~~~~l~~~~~~~Gf~~~~----~iiW~K~~ 140 (297)
T 2zig_A 101 AVARRRF----GRHLVFPLHADIQVRCRKLGFDNLN----PIIWHKHT 140 (297)
T ss_dssp EEECC--------EEEECHHHHHHHHHHHTTCEEEE----EEEEECC-
T ss_pred ccccccC----CcccccccHHHHHHHHHHcCCeeec----cEEEeCCC
Confidence 1000000 0000000123455567778886554 46999985
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.31 E-value=0.33 Score=49.25 Aligned_cols=96 Identities=10% Similarity=0.144 Sum_probs=55.8
Q ss_pred eEEEEecccc-CC-CCCCCeeEEEeccccccc-------------ccChHHHHHHHHHcccCCcEEEEEeCCCCcccccc
Q 009069 266 ALIGVMASIR-LP-YPSRAFDMAHCSRCLIPW-------------GQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWK 330 (544)
Q Consensus 266 ~~~~v~d~~~-LP-fpd~sFDlV~~~~~l~h~-------------~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~ 330 (544)
..+..+|... +. +++++||+|++..-+..- .......|.++.|+|||||.+++..... |...
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~-~~~g-- 91 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA-YMKG-- 91 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC-EETT--
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE-ecCC--
Confidence 4566677543 33 567899999997643211 1113578899999999999999986421 0000
Q ss_pred CCCcchhhhHhhhhhHHHHHHhhcceeeeeeccEEEEeccCC
Q 009069 331 GWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTN 372 (544)
Q Consensus 331 ~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~~aIwqKP~~ 372 (544)
.....+. .+..+.++.+..+|..+. ..||+|+..
T Consensus 92 ---~~~~~~~-~~~~i~~~~~~~Gf~~~~----~iiW~k~~~ 125 (323)
T 1boo_A 92 ---VPARSIY-NFRVLIRMIDEVGFFLAE----DFYWFNPSK 125 (323)
T ss_dssp ---EEEECCH-HHHHHHHHHHTTCCEEEE----EEEEECSSC
T ss_pred ---Ccccccc-hHHHHHHHHHhCCCEEEE----EEEEecCCC
Confidence 0000000 122243456777886543 479998753
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.42 Score=48.91 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=58.6
Q ss_pred hcccCCCCCEEEEeCCCC-cHHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc----C-CCCCC
Q 009069 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----L-PYPSR 281 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~----L-Pfpd~ 281 (544)
..+..+ .+||-+|+|. |.++..+++. + |.+++. ++...+++++.|....+.. .... + ...++
T Consensus 186 ~~~~~g--~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~-----~~~~~~~a~~lGa~~vi~~-~~~~~~~~~~~~~~g 257 (371)
T 1f8f_A 186 LKVTPA--SSFVTWGAGAVGLSALLAAKVCGASIIIAVDI-----VESRLELAKQLGATHVINS-KTQDPVAAIKEITDG 257 (371)
T ss_dssp TCCCTT--CEEEEESCSHHHHHHHHHHHHHTCSEEEEEES-----CHHHHHHHHHHTCSEEEET-TTSCHHHHHHHHTTS
T ss_pred cCCCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEEEECC-----CHHHHHHHHHcCCCEEecC-CccCHHHHHHHhcCC
Confidence 334444 4999999875 7777777764 4 445554 3445566766675433321 1111 0 01123
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.||+|+-.-. ....+.++.+.|++||.+++.+.
T Consensus 258 g~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 258 GVNFALESTG-------SPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp CEEEEEECSC-------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCcEEEECCC-------CHHHHHHHHHHHhcCCEEEEeCC
Confidence 6999985432 14678899999999999998864
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.14 E-value=0.31 Score=47.72 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCcc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPR 249 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~ 249 (544)
...++.+.+... .. +..|||..||+|+.+....+. .++++|+++.
T Consensus 199 ~~l~~~~i~~~~-~~--~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~ 245 (260)
T 1g60_A 199 RDLIERIIRASS-NP--NDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAE 245 (260)
T ss_dssp HHHHHHHHHHHC-CT--TCEEEESSCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred HHHHHHHHHHhC-CC--CCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHH
Confidence 445555555543 33 448999999999988888776 4666666553
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=90.00 E-value=1.2 Score=45.71 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=63.4
Q ss_pred CCEEEEeCCCCcHHHHHHhh--CCcEEEeCCccchHHHHHHHHHHc----------------------CCCeEEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMS--RNILAVSFAPRDTHEAQVQFALER----------------------GVPALIGVMASI 274 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~--~~V~~vdisp~dls~a~v~~A~er----------------------gv~~~~~v~d~~ 274 (544)
...|+.+|||..+.+.+|.. .++..++++-.++-+...+...+. .....++-+|..
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~ 177 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN 177 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence 35799999999999999986 477777874333333333333332 123455555544
Q ss_pred cCC--------C-CCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 275 RLP--------Y-PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 275 ~LP--------f-pd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
... . ..+...++++-.++..+.++. ..++..+.+.+ |||.+++.+
T Consensus 178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e 232 (334)
T 1rjd_A 178 DITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYD 232 (334)
T ss_dssp CHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEE
T ss_pred CcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEe
Confidence 321 1 335678888888886666544 56777777766 788776543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=89.81 E-value=0.39 Score=49.74 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcccCC----CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCcc
Q 009069 202 DAYIDDIGKLINLKDG----SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPR 249 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g----~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~ 249 (544)
...++.|.+.+.+... ....|||||.|.|.++..|+++ .+++++++..
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~ 93 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSS 93 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHH
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHH
Confidence 4466778887765532 3458999999999999999964 6889999664
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=89.56 E-value=0.79 Score=46.62 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=58.0
Q ss_pred hcccCCCCCEEEEeCCCC-cHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEe--cccc----C-CCCCC
Q 009069 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVM--ASIR----L-PYPSR 281 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~--d~~~----L-Pfpd~ 281 (544)
..+..++ +||-+|+|. |.++..+++. +. .++-+ +.++...+++++.|....+... +... + ....+
T Consensus 167 ~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~---~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~ 241 (356)
T 1pl8_A 167 GGVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVVT---DLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGC 241 (356)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEE---CCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCC
Confidence 3444444 899999874 6777777763 44 33333 2234555677777765333211 0000 0 00014
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.||+|+-.-. ....+.+..++|+|||.+++.+.
T Consensus 242 g~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 242 KPEVTIECTG-------AEASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CCSEEEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCCEEEECCC-------ChHHHHHHHHHhcCCCEEEEEec
Confidence 6999985431 13567889999999999998764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=88.80 E-value=1.2 Score=46.07 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=59.7
Q ss_pred HhcccCCCCCEEEEeCCCC-cHHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCC-------
Q 009069 211 LINLKDGSIRTAIDTGCGV-ASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY------- 278 (544)
Q Consensus 211 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPf------- 278 (544)
...+..++ +||-+|+|. |.++..+++. + |++++. ++...+++++.|. ... +.....+
T Consensus 180 ~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~-----~~~~~~~a~~lGa--~~i--~~~~~~~~~~~~~~ 248 (398)
T 2dph_A 180 SAGVKPGS--HVYIAGAGPVGRCAAAGARLLGAACVIVGDQ-----NPERLKLLSDAGF--ETI--DLRNSAPLRDQIDQ 248 (398)
T ss_dssp HTTCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEEES-----CHHHHHHHHTTTC--EEE--ETTSSSCHHHHHHH
T ss_pred HcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----CHHHHHHHHHcCC--cEE--cCCCcchHHHHHHH
Confidence 34444444 999999975 7777777763 4 444554 3445566766664 222 2211111
Q ss_pred --CCCCeeEEEeccccccc-------ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 --PSRAFDMAHCSRCLIPW-------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 --pd~sFDlV~~~~~l~h~-------~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....||+|+-.-.-... ...+...+.++.+.|++||.+++.+.
T Consensus 249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 249 ILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp HHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred HhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 12369999864432100 00123578999999999999998764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.68 E-value=1.3 Score=43.32 Aligned_cols=71 Identities=13% Similarity=0.013 Sum_probs=42.4
Q ss_pred CCCCeeEEEeccccccc-------------ccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhh
Q 009069 279 PSRAFDMAHCSRCLIPW-------------GQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNG 345 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~-------------~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ 345 (544)
++++||+|++..-..-- .......|.++.|+|+|||.+++.... | ....
T Consensus 20 ~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d--~----------------~~~~ 81 (260)
T 1g60_A 20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP--F----------------NCAF 81 (260)
T ss_dssp CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH--H----------------HHHH
T ss_pred cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc--H----------------HHHH
Confidence 45678888875532110 001246788899999999999988420 0 0112
Q ss_pred HHHHHHhhcceeeeeeccEEEEeccC
Q 009069 346 IETIARSLCWKKLIQKKDLAIWQKPT 371 (544)
Q Consensus 346 ie~la~~l~w~~v~~~~~~aIwqKP~ 371 (544)
+..+....+|.... ..||+|+.
T Consensus 82 ~~~~~~~~gf~~~~----~iiW~K~~ 103 (260)
T 1g60_A 82 ICQYLVSKGMIFQN----WITWDKRD 103 (260)
T ss_dssp HHHHHHHTTCEEEE----EEEECCCC
T ss_pred HHHHHHhhccceeE----EEEEEecC
Confidence 33345556674433 47899974
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=88.61 E-value=0.52 Score=47.77 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=56.5
Q ss_pred cccCCCCCEEEEeCCCC-cHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEe
Q 009069 213 NLKDGSIRTAIDTGCGV-ASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288 (544)
Q Consensus 213 ~l~~g~~r~VLDIGCGt-G~~a~~La~~-~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~ 288 (544)
.+..+ .+||-+|+|. |.++..+++. + |++++.++ ...+++++.|....+ .+...+ . ..+|+|+-
T Consensus 173 ~~~~g--~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~-----~~~~~~~~lGa~~v~--~~~~~~--~-~~~D~vid 240 (348)
T 3two_A 173 KVTKG--TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNE-----HKKQDALSMGVKHFY--TDPKQC--K-EELDFIIS 240 (348)
T ss_dssp TCCTT--CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS-----TTHHHHHHTTCSEEE--SSGGGC--C-SCEEEEEE
T ss_pred CCCCC--CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHhcCCCeec--CCHHHH--h-cCCCEEEE
Confidence 44444 4899999874 6777777664 5 44444433 334566666755444 232222 2 27999985
Q ss_pred cccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.-.- ...+..+.+.|+|||.+++.+.
T Consensus 241 ~~g~-------~~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 241 TIPT-------HYDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp CCCS-------CCCHHHHHTTEEEEEEEEECCC
T ss_pred CCCc-------HHHHHHHHHHHhcCCEEEEECC
Confidence 4321 1357788899999999999865
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=87.78 E-value=0.66 Score=42.73 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=51.2
Q ss_pred CCCEEEEeCC--CCcHHHHHHhh-CC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCee
Q 009069 218 SIRTAIDTGC--GVASWGAYLMS-RN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAFD 284 (544)
Q Consensus 218 ~~r~VLDIGC--GtG~~a~~La~-~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--------fpd~sFD 284 (544)
.+.+||.+|+ |.|..+..++. .+ |.+++.+ +...+.+.+.+....+ |..... ...+.+|
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~-----~~~~~~~~~~g~~~~~---d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS-----DAKREMLSRLGVEYVG---DSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS-----HHHHHHHHTTCCSEEE---ETTCSTHHHHHHHHTTTCCEE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcCCCEEe---eCCcHHHHHHHHHHhCCCCCe
Confidence 3458999995 34555555544 35 4444442 3334445444543222 221111 1224699
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|+.+.. ...+.++.+.|+|||.+++.+.
T Consensus 110 ~vi~~~g--------~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 110 VVLNSLA--------GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEEECCC--------THHHHHHHHTEEEEEEEEECSC
T ss_pred EEEECCc--------hHHHHHHHHHhccCCEEEEEcC
Confidence 9996431 2568889999999999998754
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=87.68 E-value=1 Score=45.74 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=46.4
Q ss_pred eEEEEecccc-CC-CCCCCeeEEEecccccccccCh----HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhh
Q 009069 266 ALIGVMASIR-LP-YPSRAFDMAHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDL 339 (544)
Q Consensus 266 ~~~~v~d~~~-LP-fpd~sFDlV~~~~~l~h~~~d~----~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L 339 (544)
..+..+|+.. ++ +.+..||+|+.-. |.+-. +| ..+|..+.++++|||.|+--..
T Consensus 168 L~l~~GDa~~~l~~l~~~~~Da~flDg-FsP~k-NPeLWs~e~f~~l~~~~~pgg~laTYta------------------ 227 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVENFKADAVFHDA-FSPYK-NPELWTLDFLSLIKERIDEKGYWVSYSS------------------ 227 (308)
T ss_dssp EEEEESCHHHHGGGCCSCCEEEEEECC-SCTTT-SGGGGSHHHHHHHHTTEEEEEEEEESCC------------------
T ss_pred EEEEechHHHHHhhhcccceeEEEeCC-CCccc-CcccCCHHHHHHHHHHhCCCcEEEEEeC------------------
Confidence 4455666432 33 3455799999733 32222 22 6899999999999999864211
Q ss_pred HhhhhhHHHHHHhhcceeeeee
Q 009069 340 KSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 340 ~~~~~~ie~la~~l~w~~v~~~ 361 (544)
...++......||+.....
T Consensus 228 ---ag~VRR~L~~aGF~V~k~~ 246 (308)
T 3vyw_A 228 ---SLSVRKSLLTLGFKVGSSR 246 (308)
T ss_dssp ---CHHHHHHHHHTTCEEEEEE
T ss_pred ---cHHHHHHHHHCCCEEEecC
Confidence 1236667778899866543
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=86.66 E-value=1.1 Score=45.87 Aligned_cols=100 Identities=19% Similarity=0.176 Sum_probs=59.9
Q ss_pred HHhcccCCCCCEEEEeCCCC-cHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEecc------cc-CCCC
Q 009069 210 KLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMAS------IR-LPYP 279 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~------~~-LPfp 279 (544)
+...+..++ +||=+|+|. |.++..+++. |. .++-+ +.++...+++++.|....+...+. .. ....
T Consensus 176 ~~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~---~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 176 DLSGIKAGS--TVAILGGGVIGLLTVQLARLAGATTVILS---TRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HHHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEE---CSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSS
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEE---CCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhcc
Confidence 334445544 899999864 6677777664 54 34433 223455567777775543321000 00 0022
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+.||+|+-.-. ....+.++.+.|++||.+++.+.
T Consensus 251 ~gg~Dvvid~~G-------~~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 251 PGGVDVVIECAG-------VAETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp TTCEEEEEECSC-------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCCEEEECCC-------CHHHHHHHHHHhccCCEEEEEec
Confidence 347999986431 24678999999999999999864
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=86.07 E-value=5.5 Score=40.20 Aligned_cols=102 Identities=11% Similarity=-0.008 Sum_probs=62.3
Q ss_pred CEEEEeCCCCcHHHHHHh-hCCcEEEeCCccchHHHHHHHHHHcC----CCeEEEEecccc-----C---CCCCCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLM-SRNILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIR-----L---PYPSRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La-~~~V~~vdisp~dls~a~v~~A~erg----v~~~~~v~d~~~-----L---Pfpd~sFDlV 286 (544)
+.||+||||-=+.+..+. ..++..++++-.++-....++..+.+ ....++.+|... + .|..+.-=++
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~~ 183 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTAW 183 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEEE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEEE
Confidence 479999999998888887 33566666643233233333332221 224455555543 0 1222334566
Q ss_pred EecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 287 HCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 287 ~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++-.+++++.++. ..+++.+...+.||+++++...
T Consensus 184 i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~ 219 (310)
T 2uyo_A 184 LAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS 219 (310)
T ss_dssp EECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 6767776555533 6788888888899999999854
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=85.85 E-value=1.6 Score=43.92 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCC------CCCCeeEEEecc
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY------PSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPf------pd~sFDlV~~~~ 290 (544)
+.+||-+|+|. |.++..+++. +..++.+ +.++...+++++.|....+. .....+ ..+.+|+|+-..
T Consensus 167 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~---~~~~~~~~~~~~lGa~~~i~---~~~~~~~~~~~~~~g~~d~vid~~ 240 (340)
T 3s2e_A 167 GQWVVISGIGGLGHVAVQYARAMGLRVAAV---DIDDAKLNLARRLGAEVAVN---ARDTDPAAWLQKEIGGAHGVLVTA 240 (340)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEE---TTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEE---eCCHHHHHHHHHcCCCEEEe---CCCcCHHHHHHHhCCCCCEEEEeC
Confidence 44899999974 8888888764 5544444 22345566777777554332 111111 113689887532
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ....+..+.+.|+|||.+++.+.
T Consensus 241 g-------~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 241 V-------SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp C-------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred C-------CHHHHHHHHHHhccCCEEEEeCC
Confidence 1 25688999999999999999864
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.84 E-value=2.4 Score=42.85 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=57.4
Q ss_pred hcccCCCCCEEEEeCCCC-cHHHHHHhhC-Cc--EEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC------CC--
Q 009069 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI--LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------YP-- 279 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~V--~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP------fp-- 279 (544)
..+..++ +||-+|+|. |.++..+++. +. .+++. ++...+++++.|....+...+..... ..
T Consensus 164 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~-----~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~ 236 (352)
T 1e3j_A 164 AGVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVVCTAR-----SPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSA 236 (352)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEES-----CHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHH
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEEEcC-----CHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccc
Confidence 3444444 899999873 6666676653 54 44444 34455667676765333211101110 01
Q ss_pred -CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 -SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 -d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+.+|+|+..-. ....+.+..+.|+|||.+++.+.
T Consensus 237 ~g~g~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 237 IGDLPNVTIDCSG-------NEKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp SSSCCSEEEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred cCCCCCEEEECCC-------CHHHHHHHHHHHhcCCEEEEEec
Confidence 246999986432 13568889999999999998764
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=84.53 E-value=2.6 Score=42.75 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=35.8
Q ss_pred EEE-Eecccc-C-CCCCCCeeEEEecccccc----------cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 267 LIG-VMASIR-L-PYPSRAFDMAHCSRCLIP----------WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 267 ~~~-v~d~~~-L-Pfpd~sFDlV~~~~~l~h----------~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+. .+|... + .+++++||+|++..-..- |.......|.++.|+|+|||.+++...
T Consensus 40 ~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 40 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 344 566432 1 245778999998663311 111125678889999999999999865
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.47 E-value=3.7 Score=42.18 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=59.5
Q ss_pred hcccCCCCCEEEEeCCCC-cHHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-----CC--CC
Q 009069 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----LP--YP 279 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-----LP--fp 279 (544)
..+..+ .+||-+|+|. |.++..+++. + |.+++. ++...+++++.|.. ........ +. ..
T Consensus 181 ~~~~~g--~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~-----~~~~~~~a~~lGa~--~i~~~~~~~~~~~v~~~t~ 251 (398)
T 1kol_A 181 AGVGPG--STVYVAGAGPVGLAAAASARLLGAAVVIVGDL-----NPARLAHAKAQGFE--IADLSLDTPLHEQIAALLG 251 (398)
T ss_dssp TTCCTT--CEEEEECCSHHHHHHHHHHHHTTCSEEEEEES-----CHHHHHHHHHTTCE--EEETTSSSCHHHHHHHHHS
T ss_pred cCCCCC--CEEEEECCcHHHHHHHHHHHHCCCCeEEEEcC-----CHHHHHHHHHcCCc--EEccCCcchHHHHHHHHhC
Confidence 344444 4899999874 7777777764 4 444444 34566677777753 22111111 00 01
Q ss_pred CCCeeEEEeccccc---------ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLI---------PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~---------h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+|+|+-.-... |.. ++...+.++.+.|++||.+++.+.
T Consensus 252 g~g~Dvvid~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 252 EPEVDCAVDAVGFEARGHGHEGAKHE-APATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSB-CTTHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCCEEEECCCCccccccccccccc-chHHHHHHHHHHHhcCCEEEEecc
Confidence 24699999644321 111 234678999999999999998764
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=84.38 E-value=1.2 Score=45.12 Aligned_cols=95 Identities=20% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHhcccCCCCCEEEEeCCCC-cHHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-------
Q 009069 210 KLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------- 277 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP------- 277 (544)
+...+..++ +||=+|+|. |.++..+++. + |.+++. ++...+++++.|....+ +.....
T Consensus 160 ~~~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~-----~~~~~~~~~~lGa~~vi---~~~~~~~~~~v~~ 229 (352)
T 3fpc_A 160 ELANIKLGD--TVCVIGIGPVGLMSVAGANHLGAGRIFAVGS-----RKHCCDIALEYGATDII---NYKNGDIVEQILK 229 (352)
T ss_dssp HHTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSSEEEECC-----CHHHHHHHHHHTCCEEE---CGGGSCHHHHHHH
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEECC-----CHHHHHHHHHhCCceEE---cCCCcCHHHHHHH
Confidence 344445544 899999874 6777777764 3 454444 34455677777754332 211111
Q ss_pred -CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 -YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 -fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.....||+|+-.-. ....+.++.+.|+|||.+++.+.
T Consensus 230 ~t~g~g~D~v~d~~g-------~~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 230 ATDGKGVDKVVIAGG-------DVHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp HTTTCCEEEEEECSS-------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred HcCCCCCCEEEECCC-------ChHHHHHHHHHHhcCCEEEEecc
Confidence 12346999985331 12578889999999999998864
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=84.34 E-value=1.3 Score=44.31 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=51.9
Q ss_pred CCEEEEeCC--CCcHHHHHHhh-CCc--EEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-CC-------CCCCCeeE
Q 009069 219 IRTAIDTGC--GVASWGAYLMS-RNI--LAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LP-------YPSRAFDM 285 (544)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~-~~V--~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-LP-------fpd~sFDl 285 (544)
+.+||-+|+ |.|..+..++. .+. .+++.+ +...+.+.+.+....+ |... .. ...+.+|+
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~-----~~~~~~~~~~g~~~~~---d~~~~~~~~~~~~~~~~~~~d~ 217 (333)
T 1v3u_A 146 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS-----DEKIAYLKQIGFDAAF---NYKTVNSLEEALKKASPDGYDC 217 (333)
T ss_dssp SCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTCSEEE---ETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHhcCCcEEE---ecCCHHHHHHHHHHHhCCCCeE
Confidence 458999998 45566655554 454 444442 3344455455543322 2211 00 01246999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+.+.. ...+.++.+.|++||.+++.+.
T Consensus 218 vi~~~g--------~~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 218 YFDNVG--------GEFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp EEESSC--------HHHHHHHHTTEEEEEEEEECCC
T ss_pred EEECCC--------hHHHHHHHHHHhcCCEEEEEec
Confidence 986542 2457888999999999998764
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.29 E-value=0.63 Score=47.81 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=52.8
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEec---cccCCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMA---SIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d---~~~LPfpd~sFDlV~~~~~ 291 (544)
+.+||-+|+|. |.++..+++. + |++++.++. ..+++++.|....+...+ ...+. +.+|+|+..-.
T Consensus 195 g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~~~~~~~~~---~g~Dvvid~~g 266 (369)
T 1uuf_A 195 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA-----KREAAKALGADEVVNSRNADEMAAHL---KSFDFILNTVA 266 (369)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG-----GHHHHHHHTCSEEEETTCHHHHHTTT---TCEEEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHcCCcEEeccccHHHHHHhh---cCCCEEEECCC
Confidence 44899999874 6777777663 4 455555443 334555556443322111 11121 46999986432
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ...+.++.+.|++||.+++.+.
T Consensus 267 ~-------~~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 267 A-------PHNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp S-------CCCHHHHHTTEEEEEEEEECCC
T ss_pred C-------HHHHHHHHHHhccCCEEEEecc
Confidence 1 1246778899999999998764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=84.16 E-value=0.95 Score=46.20 Aligned_cols=91 Identities=15% Similarity=0.081 Sum_probs=54.5
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC------CCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------YPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP------fpd~sFDlV~~~~ 290 (544)
+.+||-+|+|. |..+..+++. +..++-+ +.++...+++++.|....+. .+...+. .....+|+|+-.-
T Consensus 190 g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~---~~~~~~~~~~~~lGa~~vi~-~~~~~~~~~v~~~~~g~g~D~vid~~ 265 (363)
T 3uog_A 190 GDRVVVQGTGGVALFGLQIAKATGAEVIVT---SSSREKLDRAFALGADHGIN-RLEEDWVERVYALTGDRGADHILEIA 265 (363)
T ss_dssp TCEEEEESSBHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHHTTCCEEEEEEET
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEE---ecCchhHHHHHHcCCCEEEc-CCcccHHHHHHHHhCCCCceEEEECC
Confidence 44899999774 6666666653 5444433 22344556676667644332 1111100 1234799998643
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ...+..+.+.|+|||.+++.+.
T Consensus 266 g--------~~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 266 G--------GAGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp T--------SSCHHHHHHHEEEEEEEEEECC
T ss_pred C--------hHHHHHHHHHhhcCCEEEEEec
Confidence 2 1346778899999999999864
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=83.10 E-value=1.2 Score=45.01 Aligned_cols=87 Identities=24% Similarity=0.232 Sum_probs=51.9
Q ss_pred CCEEEEeCCC--CcHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCeeE
Q 009069 219 IRTAIDTGCG--VASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAFDM 285 (544)
Q Consensus 219 ~r~VLDIGCG--tG~~a~~La~~-~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--------fpd~sFDl 285 (544)
+.+||-+|+| .|..+..+++. + +.+++.++.. .+++++.|....+. ..... .....+|+
T Consensus 145 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~-----~~~~~~lga~~~~~---~~~~~~~~~~~~~~~~~g~Dv 216 (340)
T 3gms_A 145 NDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKH-----TEELLRLGAAYVID---TSTAPLYETVMELTNGIGADA 216 (340)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTT-----HHHHHHHTCSEEEE---TTTSCHHHHHHHHTTTSCEEE
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHH-----HHHHHhCCCcEEEe---CCcccHHHHHHHHhCCCCCcE
Confidence 4499999997 46677666653 4 5555654432 34455556443332 11111 12347999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+..-. ...+.+..+.|++||.+++.+.
T Consensus 217 vid~~g--------~~~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 217 AIDSIG--------GPDGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp EEESSC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEECCC--------ChhHHHHHHHhcCCCEEEEEee
Confidence 986442 2233455689999999999864
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=82.94 E-value=1.4 Score=44.21 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=56.6
Q ss_pred HHhcccCCCCCEEEEeCC--CCcHHHHHHhh-CCcEEEeCCccchHHHHHHHH-HHcCCCeEEEEeccccC-----CCCC
Q 009069 210 KLINLKDGSIRTAIDTGC--GVASWGAYLMS-RNILAVSFAPRDTHEAQVQFA-LERGVPALIGVMASIRL-----PYPS 280 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGC--GtG~~a~~La~-~~V~~vdisp~dls~a~v~~A-~ergv~~~~~v~d~~~L-----Pfpd 280 (544)
+...+..+ .+||-+|+ |.|..+..+++ .+..++-+ +.++...+.+ ++.|....+...+ ..+ ....
T Consensus 143 ~~~~~~~g--~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~---~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~ 216 (336)
T 4b7c_A 143 DVGQPKNG--ETVVISGAAGAVGSVAGQIARLKGCRVVGI---AGGAEKCRFLVEELGFDGAIDYKN-EDLAAGLKRECP 216 (336)
T ss_dssp HTTCCCTT--CEEEESSTTSHHHHHHHHHHHHTTCEEEEE---ESSHHHHHHHHHTTCCSEEEETTT-SCHHHHHHHHCT
T ss_pred HhcCCCCC--CEEEEECCCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHcCCCEEEECCC-HHHHHHHHHhcC
Confidence 33444444 49999998 35666666665 35444433 2223444555 4555443322111 000 0013
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.+|+|+.+-. ...+..+.+.|++||.+++.+.
T Consensus 217 ~~~d~vi~~~g--------~~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 217 KGIDVFFDNVG--------GEILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp TCEEEEEESSC--------HHHHHHHHTTEEEEEEEEECCC
T ss_pred CCceEEEECCC--------cchHHHHHHHHhhCCEEEEEee
Confidence 46999986442 2578889999999999998764
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=81.42 E-value=2 Score=43.17 Aligned_cols=92 Identities=14% Similarity=0.041 Sum_probs=52.9
Q ss_pred CCEEEEeCC--CCcHHHHHHhh-CCcEEEeCCccchHHHHHHHHH-HcCCCeEEEEeccccCC-----CCCCCeeEEEec
Q 009069 219 IRTAIDTGC--GVASWGAYLMS-RNILAVSFAPRDTHEAQVQFAL-ERGVPALIGVMASIRLP-----YPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~-~~V~~vdisp~dls~a~v~~A~-ergv~~~~~v~d~~~LP-----fpd~sFDlV~~~ 289 (544)
+.+||-+|+ |.|..+..+++ .+..++-+ +.++...+.+. +.|....+...+...+. ...+.+|+|+.+
T Consensus 156 g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~---~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~ 232 (345)
T 2j3h_A 156 GETVYVSAASGAVGQLVGQLAKMMGCYVVGS---AGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFEN 232 (345)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEE---ESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEES
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEEC
Confidence 448999997 45666666665 35444333 22234445555 34543322111100110 012469999865
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-. ...+....+.|++||.+++.+.
T Consensus 233 ~g--------~~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 233 VG--------GKMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp SC--------HHHHHHHHTTEEEEEEEEECCC
T ss_pred CC--------HHHHHHHHHHHhcCCEEEEEcc
Confidence 42 2478889999999999998764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=80.64 E-value=2 Score=43.78 Aligned_cols=96 Identities=15% Similarity=0.057 Sum_probs=56.3
Q ss_pred hcccCCCCCEEEEeCCCC-cHHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-ccC-----CCCC
Q 009069 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMAS-IRL-----PYPS 280 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~-~~L-----Pfpd 280 (544)
..+..+ .+||-+|+|. |.++..+++. + |++++.++ ...+++++.|....+...+. ..+ ....
T Consensus 187 ~~~~~g--~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~-----~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 187 AKVTPG--STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK-----DKFPKAIELGATECLNPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp TCCCTT--CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG-----GGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred cCCCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH-----HHHHHHHHcCCcEEEecccccchHHHHHHHHhC
Confidence 334444 4899999873 6677777663 4 44555433 33455666665433211110 000 0112
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCC-cEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPG-GYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPG-G~Lvis~p 321 (544)
+.+|+|+-.-. ....+.++.+.|++| |.+++.+.
T Consensus 260 gg~Dvvid~~g-------~~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 260 GGVDYAVECAG-------RIETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp SCBSEEEECSC-------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCCCEEEECCC-------CHHHHHHHHHHHhcCCCEEEEEcc
Confidence 37999985331 146788999999999 99998764
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=80.05 E-value=2.3 Score=43.44 Aligned_cols=88 Identities=17% Similarity=0.099 Sum_probs=53.5
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc--CCC-------CCCCee
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR--LPY-------PSRAFD 284 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~--LPf-------pd~sFD 284 (544)
+.+||-+|+|. |.++..+++. + |++++.++ ...+++++.|....+ +... ..+ ..+.+|
T Consensus 193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~-----~~~~~~~~lGa~~vi---~~~~~~~~~~~~~~~~~~~g~D 264 (374)
T 1cdo_A 193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP-----DKFEKAKVFGATDFV---NPNDHSEPISQVLSKMTNGGVD 264 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG-----GGHHHHHHTTCCEEE---CGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH-----HHHHHHHHhCCceEE---eccccchhHHHHHHHHhCCCCC
Confidence 34899999863 6666676653 4 44455433 334456666654332 2211 010 123699
Q ss_pred EEEecccccccccChHHHHHHHHHcccCC-cEEEEEeC
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPG-GYWILSGP 321 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPG-G~Lvis~p 321 (544)
+|+-.-. ....+..+.+.|++| |.+++.+.
T Consensus 265 ~vid~~g-------~~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 265 FSLECVG-------NVGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp EEEECSC-------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred EEEECCC-------CHHHHHHHHHHhhcCCcEEEEEcC
Confidence 9985431 146788999999999 99998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 544 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 3e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 0.001 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.002 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 6/146 (4%)
Query: 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER 262
++++I K ++ R +D CG L R V + + +
Sbjct: 28 DFVEEIFKEDAKREV--RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE 85
Query: 263 GVPALIGVMASIRLPYPSRAFDMAHCSRCLIP--WGQYDGLYLIEVDRVLRPGGYWILSG 320
+ + + FD I + +V L+PGG +I
Sbjct: 86 RNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145
Query: 321 PPVNWESHWKGWNRTTEDLKSEQNGI 346
P W + + K E+ +
Sbjct: 146 P--CWFYGGRDGPVVWNEQKGEEKLV 169
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 40.4 bits (94), Expect = 3e-04
Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 19/163 (11%)
Query: 198 PRGADA-YIDDIGKLI---NLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAP 248
R D +I L+ G ++ G G + +Y++ + V
Sbjct: 63 RRNTQIISEIDASYIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVVERDE 120
Query: 249 RDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDR 308
+ +A + + + + I + +D IP ++ ++
Sbjct: 121 DNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD---IPDPWN---HVQKIAS 174
Query: 309 VLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIAR 351
+++PG P N++ K + +E + R
Sbjct: 175 MMKPGSVATFYLP--NFDQSEKTVLSLSASGMHHLETVELMKR 215
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 38.9 bits (90), Expect = 0.001
Identities = 27/163 (16%), Positives = 49/163 (30%), Gaps = 17/163 (10%)
Query: 197 FPRGADAY----IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTH 252
R I ++++K+G IDTG G + A L + +
Sbjct: 80 MKRRTQIVYPKDSSFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR 137
Query: 253 EAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP 312
E + A + +I++ S FD + Y+ + L+
Sbjct: 138 EEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWN-YIDKCWEALKG 196
Query: 313 GGYWILSGPPVNWESHWKGWNRTTEDLK----SEQNGIETIAR 351
GG + P N T + L+ E++ R
Sbjct: 197 GGRFATVCPTTNQ------VQETLKKLQELPFIRIEVWESLFR 233
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/140 (15%), Positives = 36/140 (25%), Gaps = 3/140 (2%)
Query: 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE 261
+ D I + + +D CG + L + + ++ +
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFR 80
Query: 262 RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDG---LYLIEVDRVLRPGGYWIL 318
I +R FD+ C + Y V L+ GG +I
Sbjct: 81 SQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140
Query: 319 SGPPVNWESHWKGWNRTTED 338
S G N D
Sbjct: 141 DINSYYKLSQVLGNNDFNYD 160
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 544 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.72 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.71 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.64 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.62 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.6 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.58 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.58 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.53 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.51 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.51 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.5 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.49 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.49 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.47 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.47 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.47 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.46 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.44 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.43 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.43 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.41 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.41 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.39 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.36 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.34 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.32 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.28 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.25 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.25 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.25 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.24 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.23 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.22 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.21 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.2 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.11 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.1 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.1 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.08 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.07 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.05 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.04 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.03 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.01 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.94 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.9 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.89 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.85 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.75 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.74 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.7 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.68 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.55 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.52 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.52 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.49 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.43 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.33 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.32 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.29 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.27 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.22 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.2 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.13 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.1 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.07 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.05 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.04 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.01 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.93 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.92 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.89 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.86 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.76 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.63 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.56 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.51 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.43 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.4 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.36 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.36 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.36 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.31 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.31 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.25 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.22 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.2 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.17 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.13 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.01 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.91 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.8 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.78 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.73 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.06 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.76 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.5 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.11 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.06 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.89 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 94.72 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.64 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.17 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.07 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 91.89 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.74 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.93 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.91 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.47 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.23 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.5 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 88.93 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.85 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.5 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.82 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 86.44 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 85.57 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 82.96 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 82.9 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 82.08 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 81.45 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.72 E-value=1.2e-17 Score=159.37 Aligned_cols=113 Identities=14% Similarity=0.200 Sum_probs=92.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sF 283 (544)
.++.+.++++++. +|||||||+|.++..|+++ .++++|+++.++..++.........++.+.++|...+|+++++|
T Consensus 5 ~~ll~~~~l~~~~--rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 5 AKLMQIAALKGNE--EVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHhcCCCCcC--EEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 4566777777666 8999999999999999987 47778888877766554444333456889999999999999999
Q ss_pred eEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|+|..+++|+. ++..+|.++.|+|||||+|++..+
T Consensus 83 D~v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 83 HIVTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp EEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccC-CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9999999997765 589999999999999999999753
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=3.1e-17 Score=157.86 Aligned_cols=115 Identities=21% Similarity=0.286 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYP 279 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfp 279 (544)
.+.+.+.+.++++++. +|||||||+|.++..|+++ .++++|+++.++..++. .+...+. ++.+.++|++.+|++
T Consensus 3 ~~~~~l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~-~~~~~~~~~~~~~~~d~~~~~~~ 79 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASS-FAQEKGVENVRFQQGTAESLPFP 79 (234)
T ss_dssp HHHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHHTCCSEEEEECBTTBCCSC
T ss_pred hHHHHHHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhh-hhccccccccccccccccccccc
Confidence 3455677888888877 9999999999999999987 57888888877765553 3334444 588999999999999
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||+|+|..+++|+. ++..+|+++.|+|||||++++...
T Consensus 80 ~~~fD~v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 80 DDSFDIITCRYAAHHFS-DVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceeeeeceeeccc-CHHHHHHHHHHeeCCCcEEEEEEc
Confidence 99999999999996655 589999999999999999999753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=2.5e-16 Score=148.66 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=90.8
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
..++.+..++...-....+|||||||+|.++..|++.+ ++++|+++.++..++ +.+...+..+.+...|+..+|+++
T Consensus 22 ~~~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~ 100 (226)
T d1ve3a1 22 SRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFED 100 (226)
T ss_dssp HHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCT
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccC
Confidence 33444554443211223489999999999999999874 688888777775554 334445667788888999999999
Q ss_pred CCeeEEEeccccccccc-ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~-d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|+|..+++|+.. +...+|+++.|+|||||+|++..+
T Consensus 101 ~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 101 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 99999999999988763 347899999999999999999854
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.64 E-value=5.2e-16 Score=153.61 Aligned_cols=101 Identities=17% Similarity=0.333 Sum_probs=83.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||||||+|.++..|+++ .|+++|+++.++..+.. .+...++ .+.+..+|...+|+++++||+|+|..+++
T Consensus 68 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~-~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~ 146 (282)
T d2o57a1 68 QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE-YNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFL 146 (282)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGG
T ss_pred CCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhc-ccccccccccccccccccccccccccccchhhccchhh
Confidence 349999999999999999875 46778887766654443 3333444 58899999999999999999999999998
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+. ++..+|+++.|+|||||+|++..+
T Consensus 147 h~~-d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 147 HSP-DKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp GCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcc-CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 886 488999999999999999999854
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=6.1e-16 Score=147.81 Aligned_cols=99 Identities=25% Similarity=0.408 Sum_probs=78.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 009069 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d 298 (544)
+.+|||+|||+|.++..|++.+..++++ |+++.+++.|.+++... +..+++..+|+++++||+|+|...++|+.++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gi---D~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQERGFEVVLV---DPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTCEEEEE---ESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCEEEEECCCCchhcccccccceEEEEe---ecccccccccccccccc-cccccccccccccccccceeeecchhhhhhh
Confidence 4489999999999999999986444444 33456667777776543 4568899999999999999987544344556
Q ss_pred hHHHHHHHHHcccCCcEEEEEeC
Q 009069 299 DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 299 ~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..+|+++.|+|||||.|+++.+
T Consensus 119 ~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 119 KDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCcCcEEEEEEC
Confidence 88999999999999999999875
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.6e-15 Score=146.82 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~ 275 (544)
....++.+.+.+.+.++. +|||||||+|.++..|+++ + ++++|+++.++..+. +.+.+.++ .+.+..+|...
T Consensus 18 ~~~~~~~l~~~~~l~pg~--~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~~~d~~~ 94 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIHNDAAG 94 (245)
T ss_dssp CHHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCCTT
T ss_pred CHHHHHHHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhhhhHHhh
Confidence 455777888888888776 9999999999999999875 4 566777666554433 33444555 37899999888
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ +++++||+|+|..+++|+.+ ...+|.++.|+|||||++++..+
T Consensus 95 ~-~~~~~fD~v~~~~~~~~~~d-~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 95 Y-VANEKCDVAACVGATWIAGG-FAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp C-CCSSCEEEEEEESCGGGTSS-SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred c-cccCceeEEEEEehhhccCC-HHHHHHHHHHHcCcCcEEEEEec
Confidence 7 57899999999999987774 78999999999999999999864
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=3.6e-15 Score=140.18 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=93.6
Q ss_pred EEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccChH
Q 009069 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDG 300 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~ 300 (544)
+|||||||+|.++..+. .++++|+++. +++.+++++ +.+.+++...+|+++++||+|+|..+++|+. ++.
T Consensus 39 ~vLDiGcG~G~~~~~~~--~~~giD~s~~-----~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~-d~~ 108 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLK--IKIGVEPSER-----MAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFVD-DPE 108 (208)
T ss_dssp CEEEETCTTSTTHHHHT--CCEEEESCHH-----HHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGSS-CHH
T ss_pred eEEEECCCCcccccccc--eEEEEeCChh-----hcccccccc--ccccccccccccccccccccccccccccccc-ccc
Confidence 69999999999988885 4677887654 455666664 6788899999999999999999999998886 589
Q ss_pred HHHHHHHHcccCCcEEEEEeCCCCcc------ccccCCCcchhhhHhhhhhHHHHHHhhcceeee
Q 009069 301 LYLIEVDRVLRPGGYWILSGPPVNWE------SHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 301 ~~L~Ei~RVLKPGG~Lvis~pp~~w~------~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~ 359 (544)
.+|+++.|+|||||.+++..+..+.. .....+...........+++..+.++.+|+.+.
T Consensus 109 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 109 RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred cchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999987643311 000000000000001234577888999997664
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=9.2e-16 Score=146.59 Aligned_cols=141 Identities=12% Similarity=0.088 Sum_probs=99.7
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
...+|||||||+|.++..|+.+ .|+++|+++.++..+.............+.++|+..+++++++||+|++..+++|
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h 139 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 139 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 3458999999999999998754 4778888877776554433322223468889999999999999999999999998
Q ss_pred cccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeee
Q 009069 295 WGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~ 361 (544)
+.+.. ..+|.++.++|||||.|++..+........ ...........+.+.++++..+|+.+..+
T Consensus 140 ~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 140 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL---DDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEE---ETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred chhhhhhhHHHHHHHhcCCcceEEEEEccccccccc---ccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 87533 579999999999999999985411110000 01111111124567788889999877643
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.53 E-value=9e-15 Score=143.41 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=96.3
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
...+|||+|||+|.++..|+.+ .|+++|+++.++..+...+. ....+.+.+.+.+.+++++++||+|+|..+++|
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h 170 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc--ccccceeEEccccccccCCCccceEEeeccccc
Confidence 3458999999999999988754 47788887766644432221 112367888899999999999999999999999
Q ss_pred cccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 295 WGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
+.++. ..+|+++.++|||||+|++..+....... .+......+....+.+++++++.+|+.+..
T Consensus 171 l~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~--~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 171 LTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF--LVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE--EEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred cchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc--eecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence 87633 68899999999999999998642211100 000111111112345777888889977654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=3.5e-14 Score=139.70 Aligned_cols=145 Identities=17% Similarity=0.117 Sum_probs=103.2
Q ss_pred CCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEE
Q 009069 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGV 270 (544)
Q Consensus 193 ~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v 270 (544)
.+..|+.|.....+.+.+.+......+.+|||+|||+|.++..+++. .++++|+++.++..++ +.+..+++...+.+
T Consensus 95 pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~~~~~~ 173 (254)
T d2nxca1 95 PGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFLE 173 (254)
T ss_dssp CC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEEE
T ss_pred cccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCceeEEe
Confidence 34556777766666666666543344559999999999999988876 5789999998886555 45566788888888
Q ss_pred eccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHH
Q 009069 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIA 350 (544)
Q Consensus 271 ~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la 350 (544)
++... .+++++||+|+++...++ ...++.++.|+|||||+|++++.. ....+.+.+.+
T Consensus 174 ~d~~~-~~~~~~fD~V~ani~~~~----l~~l~~~~~~~LkpGG~lilSgil-----------------~~~~~~v~~~~ 231 (254)
T d2nxca1 174 GSLEA-ALPFGPFDLLVANLYAEL----HAALAPRYREALVPGGRALLTGIL-----------------KDRAPLVREAM 231 (254)
T ss_dssp SCHHH-HGGGCCEEEEEEECCHHH----HHHHHHHHHHHEEEEEEEEEEEEE-----------------GGGHHHHHHHH
T ss_pred ccccc-cccccccchhhhcccccc----HHHHHHHHHHhcCCCcEEEEEecc-----------------hhhHHHHHHHH
Confidence 77654 356789999999765422 367889999999999999998641 11134567778
Q ss_pred Hhhcceeeee
Q 009069 351 RSLCWKKLIQ 360 (544)
Q Consensus 351 ~~l~w~~v~~ 360 (544)
++.+|+.+..
T Consensus 232 ~~~Gf~~~~~ 241 (254)
T d2nxca1 232 AGAGFRPLEE 241 (254)
T ss_dssp HHTTCEEEEE
T ss_pred HHCCCEEEEE
Confidence 8888876653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=3.9e-14 Score=136.19 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=81.2
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc-cccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR-CLIP 294 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~-~l~h 294 (544)
...+|||||||+|.++..|+++ .++++|+++.++..++.+ +.+++.++.+.++|+..++++ ++||+|+|.. +++|
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~-~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccc-cccccccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 3458999999999999999988 477888887777555543 445677889999999999987 5899999975 4444
Q ss_pred ccc-ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 WGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~~~-d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.. +...+|+++.++|||||+|++..+
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 432 236899999999999999999864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.50 E-value=5e-14 Score=134.72 Aligned_cols=143 Identities=15% Similarity=0.078 Sum_probs=99.3
Q ss_pred EEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
+|||||||+|.++..|+++ .|+++|+++. +++.|+++. ..+.+..++...+++ +++||+|+|..+++|..
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~-----~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~- 95 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFNDITCVEASEE-----AISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID- 95 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCSCEEEEESCHH-----HHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS-
T ss_pred cEEEEeCCCcHHHHHHHHcCCeEEEEeCcHH-----Hhhhhhccccccccccccccccccc-ccccccccccceeEecC-
Confidence 7999999999999999987 5677777554 445555443 357778888877775 58999999999998775
Q ss_pred ChHHHHHHHH-HcccCCcEEEEEeCCCCccc-----------cccCCCcch----hhhHhhhhhHHHHHHhhcceeeeee
Q 009069 298 YDGLYLIEVD-RVLRPGGYWILSGPPVNWES-----------HWKGWNRTT----EDLKSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 298 d~~~~L~Ei~-RVLKPGG~Lvis~pp~~w~~-----------~~~~w~~t~----e~L~~~~~~ie~la~~l~w~~v~~~ 361 (544)
++..+|.++. |+|||||.+++..|..+... ....+.... +......+.++.+.++.+++.+...
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 5899999997 89999999999976332110 000000000 0001124568889999999866543
Q ss_pred ccEEEEeccCCC
Q 009069 362 KDLAIWQKPTNH 373 (544)
Q Consensus 362 ~~~aIwqKP~~~ 373 (544)
.++-||.++
T Consensus 176 ---~~~~kp~~~ 184 (225)
T d2p7ia1 176 ---GIFFKALAN 184 (225)
T ss_dssp ---EEEECCSCH
T ss_pred ---EEEeccccH
Confidence 456678754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.49 E-value=6.8e-14 Score=131.06 Aligned_cols=98 Identities=16% Similarity=0.314 Sum_probs=80.1
Q ss_pred EEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEeccccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
+|||||||+|..+.+|++++ ++++|+++.++..+... +.+.+++ +.+...|...+++ +++||+|+|..+++|++.
T Consensus 33 rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~-~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~ 110 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERI-KAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEA 110 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCT
T ss_pred cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHH-hhhccccchhhhheecccccc-cccccEEEEeeeeecCCH
Confidence 79999999999999999985 66788877777555433 3445554 6778888888775 688999999999988876
Q ss_pred Ch-HHHHHHHHHcccCCcEEEEEe
Q 009069 298 YD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 298 d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.. ..++.++.++|+|||++++..
T Consensus 111 ~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 111 QTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp THHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 44 689999999999999999975
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3e-14 Score=140.53 Aligned_cols=95 Identities=23% Similarity=0.380 Sum_probs=77.8
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
..+.+|||||||+|.++..|++. ++.++++ |+++.+++.|.++..++.+.++|+..+|+++++||+|++..+++|
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~gi---D~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGL---DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEE---ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEe---cchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH
Confidence 34558999999999999999886 4444444 444566677777777889999999999999999999999887644
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+.|+.|+|||||+|+++.|.
T Consensus 160 --------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 160 --------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp --------HHHHHHHEEEEEEEEEEEEC
T ss_pred --------HHHHHHHhCCCcEEEEEeeC
Confidence 57899999999999999873
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.47 E-value=7e-14 Score=134.87 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=86.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
..+.+.+.+......+++|||||||+|.++..|++++ ++++|+|+.++..++. .+...+.++.+.++|+..+++ ++
T Consensus 23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~-~~~~~~~~v~~~~~d~~~~~~-~~ 100 (246)
T d1y8ca_ 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAEN-KFRSQGLKPRLACQDISNLNI-NR 100 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHH-HHHHTTCCCEEECCCGGGCCC-SC
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccc-cccccCccceeeccchhhhcc-cc
Confidence 3444555555444445689999999999999999985 6777777766655443 334557789999999988876 46
Q ss_pred CeeEEEec-cccccccc--ChHHHHHHHHHcccCCcEEEEEe
Q 009069 282 AFDMAHCS-RCLIPWGQ--YDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 282 sFDlV~~~-~~l~h~~~--d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+||+|+|. .+++|+.. +...+|+++.+.|||||.|++..
T Consensus 101 ~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 89999986 45555543 23679999999999999999874
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.47 E-value=9.7e-14 Score=137.61 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
+.|++.+.+.+. +...+.+|||||||+|.++..|++. .++++|+++.++..+.. .....+.++.+.+.|+..+
T Consensus 12 ~d~l~~l~~~~~-~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~-~~~~~~~~~~f~~~d~~~~ 89 (281)
T d2gh1a1 12 DDYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE-LFRLLPYDSEFLEGDATEI 89 (281)
T ss_dssp HHHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHH-HHHSSSSEEEEEESCTTTC
T ss_pred HHHHHHHHHHHh-ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhc-ccccccccccccccccccc
Confidence 445555554432 1223458999999999999999864 37888888776655443 3334456788899999998
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++ ++||+|+|..+++|+. ++..+|+++.|+|||||.+++..+
T Consensus 90 ~~~-~~fD~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 90 ELN-DKYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CCS-SCEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccc-CCceEEEEehhhhcCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 876 5799999999997766 589999999999999999999876
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.47 E-value=1.1e-13 Score=132.06 Aligned_cols=118 Identities=16% Similarity=0.091 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEeccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASI 274 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~ 274 (544)
+...+.+..++......+.+|||||||+|..+..|++. .++++|+|+.|+..+....+... .....+...|.
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~- 101 (225)
T d1im8a_ 23 SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI- 101 (225)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT-
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh-
Confidence 33334444444422233448999999999999988863 46788887777765554433222 22344454444
Q ss_pred cCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 275 RLPYPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LPfpd~sFDlV~~~~~l~h~~~-d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+++...+|+|+|+.+++++.. +...+|+++.|+|||||.|++..+
T Consensus 102 -~~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 102 -RHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp -TTCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -hccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 4455678999999999977753 347999999999999999999864
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.46 E-value=8.8e-14 Score=127.56 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=79.1
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHc-----------------CCCeEEE
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER-----------------GVPALIG 269 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~er-----------------gv~~~~~ 269 (544)
+....+.+.++. +|||+|||+|..+.+|+++|..++++ |+++.+++.|+++ +....+.
T Consensus 11 ~~~~~l~~~~~~--rvLd~GCG~G~~a~~la~~G~~V~gv---D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 11 QYWSSLNVVPGA--RVLVPLCGKSQDMSWLSGQGYHVVGA---ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHHCCCTTC--EEEETTTCCSHHHHHHHHHCCEEEEE---EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHHcCCCCCC--EEEEecCcCCHHHHHHHHcCCceEee---cccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence 333444445444 99999999999999999997555544 4455555555543 2234566
Q ss_pred EeccccCCC-CCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 270 VMASIRLPY-PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 270 v~d~~~LPf-pd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.++...++. ....||+|++..+++++.++. ..+++++.++|||||++++..
T Consensus 86 ~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 86 CGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp EECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred cccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 667666653 357899999999998877533 789999999999999998875
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.44 E-value=5.7e-13 Score=124.75 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=94.3
Q ss_pred ecCCceecCCCCCCC-cccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHH
Q 009069 183 FQGDRFSFPGGGTMF-PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFA 259 (544)
Q Consensus 183 ~~ge~~~F~g~g~~F-~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A 259 (544)
+.|..+.|......| +.+.+...+.+.+.+....+ .+|||+|||+|.++..+++. .++++|+++.++..+.....
T Consensus 18 ~~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~~~--~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~ 95 (194)
T d1dusa_ 18 LRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKD--DDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIK 95 (194)
T ss_dssp ETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTT--CEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH
T ss_pred ECCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcCCC--CeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHH
Confidence 356666664332233 22333333446666655544 48999999999999999886 58888998877765554443
Q ss_pred HHc--CCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 260 LER--GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 260 ~er--gv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
... ...+.+...|... ++++++||+|+|+..+++..+....++.++.++|||||.+++...
T Consensus 96 ~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 96 LNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 322 2346777777655 667899999999988755443237899999999999999988753
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=1.6e-13 Score=136.60 Aligned_cols=116 Identities=13% Similarity=0.188 Sum_probs=83.3
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCC--eEEEEecc
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERGVP--ALIGVMAS 273 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~ 273 (544)
......++.+.+.+.++++. +|||||||+|.++.+++++ + |+++++++..+..++ +.+.+.++. +.+...|.
T Consensus 35 ~AQ~~k~~~~~~~l~l~~g~--~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~~~~~~~~d~ 111 (280)
T d2fk8a1 35 EAQYAKVDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQVLLQGW 111 (280)
T ss_dssp HHHHHHHHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEEEESCG
T ss_pred HHHHHHHHHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhccccchhhhhhhh
Confidence 34455566777777776666 9999999999999999876 4 566666655443332 233344543 44444444
Q ss_pred ccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 274 IRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 274 ~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..+ +++||.|++..+++|+.... ..+|+++.|+|||||.+++..
T Consensus 112 ~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 112 EDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 433 46899999999999988643 789999999999999999964
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=2.7e-13 Score=135.72 Aligned_cols=122 Identities=12% Similarity=0.122 Sum_probs=87.0
Q ss_pred CCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-Cc--EEEeCCccchHHHHHHHHHHcCCC--eE
Q 009069 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NI--LAVSFAPRDTHEAQVQFALERGVP--AL 267 (544)
Q Consensus 193 ~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~V--~~vdisp~dls~a~v~~A~ergv~--~~ 267 (544)
+.....+.....++.+.+.+.+++|. +|||||||.|.++.+++++ ++ +++++++..+..++ +.+.+.+.. +.
T Consensus 38 ~~~tL~~Aq~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l~~~v~ 114 (291)
T d1kpia_ 38 PDMTLEEAQYAKRKLALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSPRRKE 114 (291)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCCSSCEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCC--EEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhccchhhh
Confidence 33344455566677788888777766 9999999999999999865 54 55555544333222 233344543 44
Q ss_pred EEEeccccCCCCCCCeeEEEecccccccccC--------hHHHHHHHHHcccCCcEEEEEe
Q 009069 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQY--------DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 268 ~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d--------~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+...| .++.+++||.|+|..+++|+.+. -..+|+++.|+|||||.+++..
T Consensus 115 ~~~~d---~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 115 VRIQG---WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp EEECC---GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hhhhc---ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 44433 35667899999999999999753 2689999999999999999974
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=3.7e-13 Score=134.36 Aligned_cols=122 Identities=14% Similarity=0.201 Sum_probs=88.2
Q ss_pred CCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCC--CeE
Q 009069 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERGV--PAL 267 (544)
Q Consensus 193 ~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--V~~vdisp~dls~a~v~~A~ergv--~~~ 267 (544)
++....+.....++.+.+.+.+++|. +|||||||.|.++.++++. + |+++++++..+..++. .+.+.+. .+.
T Consensus 39 ~~~tL~eAQ~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~-~~~~~g~~~~v~ 115 (285)
T d1kpga_ 39 DDMTLQEAQIAKIDLALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ-LVANSENLRSKR 115 (285)
T ss_dssp TTCCHHHHHHHHHHHHHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHTCCCCSCEE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCC--EEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHH-HHHhhhhhhhhH
Confidence 33344555666677788888777766 9999999999999998875 5 4555555443332222 2223332 466
Q ss_pred EEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 268 ~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+...|...++ ++||.|++..+++|+.... ..+++++.|+|||||.+++..
T Consensus 116 ~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 116 VLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp EEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 7777776664 6899999999999987543 789999999999999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.41 E-value=1.7e-13 Score=133.18 Aligned_cols=102 Identities=21% Similarity=0.257 Sum_probs=80.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCCC-CCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPY-PSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LPf-pd~sFDlV~~~~~l 292 (544)
+.+|||||||+|..+..+++.+ ++++|+++.++..+..+ +.+.+ ..+.+.++|+...++ .+++||+|+|..++
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r-~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred cCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHH-HHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 4489999999999888888753 67888888777655433 22223 357888889877776 47789999999999
Q ss_pred cccccCh---HHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
||..... ..+|.++.|+|||||+|+++.+
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 8876543 5799999999999999999865
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=7.6e-13 Score=126.79 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHc-------------------
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER------------------- 262 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~er------------------- 262 (544)
...++.+.+++....+. +|||+|||+|..+.+|+++|..++++ |+++.+++.+.++
T Consensus 31 ~~l~~~~~~~l~~~~~~--rvLd~GCG~G~~a~~LA~~G~~V~gv---D~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (229)
T d2bzga1 31 QLLKKHLDTFLKGKSGL--RVFFPLCGKAVEMKWFADRGHSVVGV---EISELGIQEFFTEQNLSYSEEPITEIPGTKVF 105 (229)
T ss_dssp HHHHHHHHHHHTTCCSC--EEEETTCTTCTHHHHHHHTTCEEEEE---CSCHHHHHHHHHHTTCCEEEEECTTSTTCEEE
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHHhCCCcEEEE---eCCHHHHHHHHHHhhccccccchhccccccee
Confidence 33445566666555444 89999999999999999997544444 3344444444332
Q ss_pred ---CCCeEEEEeccccCC-CCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 263 ---GVPALIGVMASIRLP-YPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 263 ---gv~~~~~v~d~~~LP-fpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..+.+.++|...++ ...+.||+|+...+++|+..+. ..++.++.++|||||++++...
T Consensus 106 ~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 106 KSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp EETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 235677778876664 5678999999999999988655 7899999999999999888753
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.36 E-value=4.1e-12 Score=118.11 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=90.4
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccc
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASI 274 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~ 274 (544)
....+.-..+...+...+++ +|||+|||+|.++..+++. .|+++|+++.++..+..+ +.+.++ ++.+.++|+.
T Consensus 16 ~t~~eir~~il~~l~~~~g~--~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n-~~~~gl~~~v~~~~gda~ 92 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVTLMEGDAP 92 (186)
T ss_dssp CCCHHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEEEEESCHH
T ss_pred CChHHHHHHHHHhcCCCCCC--EEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHH-HHHcCCCcceEEEECchh
Confidence 34455555666677666655 9999999999999999887 588889988777655544 334554 6788889988
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..+++...||+|++....++ ...++.++.+.|||||++++...
T Consensus 93 ~~~~~~~~~D~v~~~~~~~~----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 93 EALCKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp HHHTTSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hcccccCCcCEEEEeCcccc----chHHHHHHHHHhCcCCEEEEEee
Confidence 88888899999999875533 46789999999999999998854
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.1e-13 Score=131.49 Aligned_cols=151 Identities=13% Similarity=0.006 Sum_probs=95.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCe----------------
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPA---------------- 266 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~---------------- 266 (544)
+.+.+.+......+.+|||||||+|.++..++.. .|+++|+++.++..++..... .....
T Consensus 39 ~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 117 (257)
T d2a14a1 39 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKK-EPGAYDWTPAVKFACELEGNS 117 (257)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHT-CTTCCCCHHHHHHHHHHTTCG
T ss_pred HHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhh-ccccchhhhHHHHHHHhcccc
Confidence 4455555444445678999999999888777655 478899988887665543321 11100
Q ss_pred ---------------EEEE----eccccCCCCCCCeeEEEecccccccccCh---HHHHHHHHHcccCCcEEEEEeCCCC
Q 009069 267 ---------------LIGV----MASIRLPYPSRAFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGPPVN 324 (544)
Q Consensus 267 ---------------~~~v----~d~~~LPfpd~sFDlV~~~~~l~h~~~d~---~~~L~Ei~RVLKPGG~Lvis~pp~~ 324 (544)
.... .+....++++++||+|++..++||..... ..+++++.|+|||||+|++.+....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~ 197 (257)
T d2a14a1 118 GRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL 197 (257)
T ss_dssp GGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred chHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence 0111 12233467889999999999999887533 5799999999999999999875322
Q ss_pred ccccccCCCcchhhhHhhhhhHHHHHHhhcceeee
Q 009069 325 WESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 325 w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~ 359 (544)
..... +...........+.++++.+..||+.+.
T Consensus 198 ~~~~~--~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 230 (257)
T d2a14a1 198 PSYMV--GKREFSCVALEKGEVEQAVLDAGFDIEQ 230 (257)
T ss_dssp CEEEE--TTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred cccee--ccccccccCCCHHHHHHHHHHCCCEEEE
Confidence 11100 0001011111235577788999997554
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.32 E-value=6.6e-12 Score=122.14 Aligned_cols=109 Identities=18% Similarity=0.279 Sum_probs=78.0
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPS 280 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~--V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd 280 (544)
.+.+.+... ..++|||||||+|.++..|+++ + ++++|+ +.++..+.... .+.+. .+.+..+|... +. .
T Consensus 71 ~~~~~~d~~--~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~rv~~~~~D~~~-~~-~ 144 (253)
T d1tw3a2 71 APAAAYDWT--NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYL-KDEGLSDRVDVVEGDFFE-PL-P 144 (253)
T ss_dssp HHHHHSCCT--TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHH-HHTTCTTTEEEEECCTTS-CC-S
T ss_pred HHHhhcCCc--cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHH-HHhhcccchhhccccchh-hc-c
Confidence 344444433 3458999999999999999986 3 455666 43454444333 33443 47788777643 22 3
Q ss_pred CCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+||+|+++.++|||.++. ..+|+++.|+|||||+|+|...
T Consensus 145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 5799999999999997643 5789999999999999999864
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.8e-12 Score=124.92 Aligned_cols=101 Identities=12% Similarity=-0.019 Sum_probs=70.2
Q ss_pred CEEEEeCCCCcHHHHHHhhC----------CcEEEeCCccchHHHHHHHHHHcCC-CeE--EEEeccc------cCCCCC
Q 009069 220 RTAIDTGCGVASWGAYLMSR----------NILAVSFAPRDTHEAQVQFALERGV-PAL--IGVMASI------RLPYPS 280 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----------~V~~vdisp~dls~a~v~~A~ergv-~~~--~~v~d~~------~LPfpd 280 (544)
.+|||||||+|.++..|++. .++++|++..++..+..+++..... .+. +...+.+ ..++++
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 37999999999988877653 2456666665554444333322222 222 2332222 245778
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|+|..+++|+. ++..+|+++.++|||||.+++..+
T Consensus 122 ~~fD~I~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp CCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEEccceecCC-CHHHHHHHHHhhCCCCCEEEEEEe
Confidence 9999999999996665 589999999999999999999864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=6.3e-12 Score=124.45 Aligned_cols=116 Identities=17% Similarity=0.251 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC-----CeEEEEeccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV-----PALIGVMASI 274 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv-----~~~~~v~d~~ 274 (544)
..+.+.+.+++....+ .+|||+|||+|.++..|++++ |+++|+|+.++..+..... .++. ...+..++..
T Consensus 42 ~~~~~~l~~~l~~~~~--~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~-~~~~~~~~~~~~~~~~~~~ 118 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW-NRRKEPAFDKWVIEEANWL 118 (292)
T ss_dssp HHHHHHHHHHHHHTTC--CEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HTTTSHHHHTCEEEECCGG
T ss_pred HHHHHHHHHHhhhcCC--CEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHH-hcccccccceeeeeecccc
Confidence 3344556666655543 489999999999999999984 6777887777755544332 2222 2233333332
Q ss_pred ----cCCCCCCCeeEEEecc-cccccccC------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 275 ----RLPYPSRAFDMAHCSR-CLIPWGQY------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ----~LPfpd~sFDlV~~~~-~l~h~~~d------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+| ..++||+|+|.. +++|+... ...+|+++.|+|||||+|++...
T Consensus 119 ~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 119 TLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp GHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 233 356899999864 67776542 25799999999999999999753
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.25 E-value=1e-11 Score=121.46 Aligned_cols=99 Identities=22% Similarity=0.294 Sum_probs=72.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
.++|||||||+|.++..|+++ .++++|+ +..+..+. +...+.+. .+.+...|... +.+ ..||+|++..++
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~-~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~vL 157 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERAR-RRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFVL 157 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH-HHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHH-HHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccccc
Confidence 458999999999999999986 3566676 33333333 23333443 36666665543 444 459999999999
Q ss_pred cccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|.++. ..+|+++.++|||||.|+|.+.
T Consensus 158 h~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 158 LNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 9998644 6789999999999999999864
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=3.7e-12 Score=122.25 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc--cC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI--RL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~--~L 276 (544)
..+.+.+.+.+.. .+.+|||||||+|.++.++++. .++++|+++.++..+.. .+.+.+..+.+...+.. ..
T Consensus 40 ~~~~~~la~~~~~---~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~ 115 (229)
T d1zx0a1 40 TPYMHALAAAASS---KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDVAP 115 (229)
T ss_dssp HHHHHHHHHHHTT---TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHHhhcc---CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHH-Hhhhccccccccccccccccc
Confidence 4455556555532 3458999999999999999876 47788887766644432 23233444555555433 44
Q ss_pred CCCCCCeeEEEe-----cccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 277 PYPSRAFDMAHC-----SRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 277 Pfpd~sFDlV~~-----~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
++++++||.|+. ...++|+.+ ...+++++.|+|||||.|++.
T Consensus 116 ~~~~~~fD~i~fD~~~~~~~~~~~~~-~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 116 TLPDGHFDGILYDTYPLSEETWHTHQ-FNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTTHH-HHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccceeecccccccccccccC-HHHHHHHHHHHcCCCcEEEEE
Confidence 678899999983 455555543 678999999999999999885
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=5.4e-12 Score=123.67 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---------------
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--------------- 264 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--------------- 264 (544)
..++.+.+.+......+.+|||||||+|.+...++.. .|+++|+++.++..++.....+.+.
T Consensus 39 ~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 118 (263)
T d2g72a1 39 WKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 118 (263)
T ss_dssp HHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhcc
Confidence 3345666666655556779999999999876555433 5899999888876555332211100
Q ss_pred ---------------CeEEEEeccc------cCCCCCCCeeEEEecccccccccCh---HHHHHHHHHcccCCcEEEEEe
Q 009069 265 ---------------PALIGVMASI------RLPYPSRAFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 265 ---------------~~~~~v~d~~------~LPfpd~sFDlV~~~~~l~h~~~d~---~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.......|.. ..+++.++||+|++.++++|.+.+. ..+++++.++|||||+|++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~ 198 (263)
T d2g72a1 119 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 198 (263)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0111222322 2234567899999999998887554 678999999999999999987
Q ss_pred CCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeee
Q 009069 321 PPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 321 pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~ 359 (544)
.......... ......+.-..++++++.+..|++.+.
T Consensus 199 ~~~~~~~~~~--~~~~~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 199 ALEESWYLAG--EARLTVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp EESCCEEEET--TEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCCcccccC--CcccccCCCCHHHHHHHHHHCCCeEEE
Confidence 5222110000 000011112345677888899997664
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=1.2e-11 Score=117.83 Aligned_cols=109 Identities=11% Similarity=0.030 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP 277 (544)
.....+.+.+.+++++ +|||||||+|.+++.|++. .|+++|+++..+..+...+......++.+..+|....+
T Consensus 62 ~~~a~~l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~ 139 (213)
T d1dl5a1 62 SLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV 139 (213)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred hhhHHHHHhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc
Confidence 3455667777777766 9999999999999988764 38889998877766665544333346777778887777
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.+++||+|++..++++.+ .++.+.|||||.|++..
T Consensus 140 ~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 140 PEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred ccccchhhhhhhccHHHhH-------HHHHHhcCCCcEEEEEE
Confidence 7788999999999886654 24678899999999864
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.22 E-value=9.6e-12 Score=120.19 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=88.5
Q ss_pred hcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCCCCeeEE
Q 009069 212 INLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LPYPSRAFDMA 286 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-LPfpd~sFDlV 286 (544)
++++++. +|||+|||+|.++..|++. .|.++|+++.++..+. +.+..+. .+.....+... .++.+..+|++
T Consensus 70 l~ikpG~--~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~-~~a~~~~-ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 70 MPIKRDS--KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAERE-NIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCTTC--EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTCT-TEEEEECCTTCGGGGTTTCCCEE
T ss_pred CCCCCCC--EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHhhhc-ccceEEEeeccCcccccccceeE
Confidence 3445544 9999999999999999875 3889999988775443 3343333 44445555433 33566777777
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
++...++ ..++...++.++.|+|||||+++++...... .+.... ...++++.+..+..+|+.+..
T Consensus 146 ~i~~~~~-~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~-----d~~~~~---~~~~~e~~~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 146 VIYEDVA-QPNQAEILIKNAKWFLKKGGYGMIAIKARSI-----DVTKDP---KEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp EEEECCC-STTHHHHHHHHHHHHEEEEEEEEEEEEGGGT-----CSSSCH---HHHHHHHHHHHHHHTEEEEEE
T ss_pred Eeecccc-chHHHHHHHHHHHHhcccCceEEEEeecccc-----CCCCCH---HHHHHHHHHHHHHcCCEEEEE
Confidence 6656554 4444688999999999999999998531110 011112 223445666777788877653
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.21 E-value=3.7e-11 Score=118.39 Aligned_cols=108 Identities=15% Similarity=0.082 Sum_probs=85.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc---CCCeEEEEeccccCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLP 277 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~er---gv~~~~~v~d~~~LP 277 (544)
..|..++.+.++. +|||+|||+|+++.+|++. .++++|+++..+..+..++.... ..++.+.+.|....+
T Consensus 86 s~Ii~~l~i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 86 AQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHhCCCCCC--EEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 4566777777766 9999999999999999875 47888887766655554433221 236788888998899
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++++||.|++ +.+ ++..++.++.|+|||||.|++..|
T Consensus 164 ~~~~~fDaV~l-----dlp-~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DML-APWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CCTTCEEEEEE-----ESS-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ccCCCcceEEE-----ecC-CHHHHHHHHHhccCCCCEEEEEeC
Confidence 99999999986 444 478899999999999999999877
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.20 E-value=1.7e-11 Score=116.39 Aligned_cols=99 Identities=12% Similarity=0.172 Sum_probs=79.2
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEecccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--YPSRAFDMAHCSRCL 292 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP--fpd~sFDlV~~~~~l 292 (544)
..|||||||+|.++..|++. .++++|+++..+..+... +.+.++ ++.+..+|+..+. ++++++|.|+..+..
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~-~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQK-VKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHH-HHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 37999999999999999875 578888888777555543 444554 6888888987776 889999999987765
Q ss_pred cccccCh--------HHHHHHHHHcccCCcEEEEEe
Q 009069 293 IPWGQYD--------GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 293 ~h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|+... ..+|.++.|+|||||.|+|.+
T Consensus 110 -P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 -PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred -ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 666533 379999999999999999975
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.11 E-value=3.7e-11 Score=114.25 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=73.0
Q ss_pred hcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC---Cee
Q 009069 212 INLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR---AFD 284 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~---sFD 284 (544)
+.+++++ +|||+|||+|..+.+|++. .|+++|+++.++..+. +.+..++ ++.+...+....+.... .+|
T Consensus 52 l~lkpg~--~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 52 LKLRGDE--RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRERN-NIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCCSSC--EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHCS-SEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCCCCC--EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhccC-CceEEEeeccCccccccccceEE
Confidence 3445555 9999999999999998874 3899999998886554 3454444 67777777666554444 455
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|++. +.|. .+...++.++.|+|||||++++..
T Consensus 128 ~v~~~--~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 128 LIYQD--IAQK-NQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EEEEC--CCST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEec--ccCh-hhHHHHHHHHHHHhccCCeEEEEE
Confidence 55442 3233 335889999999999999999974
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.7e-10 Score=115.26 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~L 276 (544)
+.|.+.|.+...... +.+|||||||+|.++..++++| |+++|.++.+. .++ +.+..++ ..+.+..++...+
T Consensus 21 ~~y~~ai~~~~~~~~--~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~-~~~~~~~~~~~i~~~~~~~~~l 96 (311)
T d2fyta1 21 ESYRDFIYQNPHIFK--DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAM-DIIRLNKLEDTITLIKGKIEEV 96 (311)
T ss_dssp HHHHHHHHHCGGGTT--TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHH-HHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhccccCC--cCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHH-HHHHHhCCCccceEEEeeHHHh
Confidence 445455554444333 3489999999999999998864 78888877543 222 3333343 3578888899999
Q ss_pred CCCCCCeeEEEecccccccccCh--HHHHHHHHHcccCCcEEEE
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvi 318 (544)
++++++||+|++....++...+. ..++....|+|||||+++-
T Consensus 97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99999999999976665544332 5778888999999999975
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.10 E-value=1.9e-10 Score=109.04 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=77.8
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEecccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--YPSRAFDMAHCSRCL 292 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP--fpd~sFDlV~~~~~l 292 (544)
..|||||||+|.++..+++. .++++|+++..+..+..+ +.+.++ ++.+..+|+..+. +++.++|.|++.+.-
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~-~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDK-VLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH-HHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHh-hhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 37999999999999999875 578888887766555443 334444 6888888887765 788999999986644
Q ss_pred cccccCh--------HHHHHHHHHcccCCcEEEEEe
Q 009069 293 IPWGQYD--------GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 293 ~h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|+... ..+|.++.|+|||||.|.+.+
T Consensus 112 -Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 -PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred -cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 666532 589999999999999999975
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.08 E-value=2.2e-10 Score=115.41 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP 277 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP 277 (544)
.|.+.|.+......+ .+|||||||+|.++..++++| |.++|.++ +. ....+.+..++. .+.+..++...++
T Consensus 25 ~y~~aI~~~~~~~~~--~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~-~~a~~~~~~~~~~~~i~~i~~~~~~l~ 100 (328)
T d1g6q1_ 25 SYRNAIIQNKDLFKD--KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKLEDVH 100 (328)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTTSC
T ss_pred HHHHHHHhccccCCc--CEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HH-HHHHHHHHHhCccccceEEEeehhhcc
Confidence 344444443333333 489999999999999998874 77888875 33 233344444543 5788888999999
Q ss_pred CCCCCeeEEEecccccccccC--hHHHHHHHHHcccCCcEEEE
Q 009069 278 YPSRAFDMAHCSRCLIPWGQY--DGLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d--~~~~L~Ei~RVLKPGG~Lvi 318 (544)
+++++||+|++....++.... ...++.++.|+|||||.++=
T Consensus 101 ~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 999999999997766544432 36789999999999998863
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=2.3e-10 Score=114.73 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=76.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||||||+|.++..++++| |+++|.++.. ..+.+.+..++. .+.+..++...++++.++||+|++....+
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~--~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS--DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH--HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH--hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 3489999999999999998864 7788887643 233344445554 47888899999999999999999976665
Q ss_pred ccccC--hHHHHHHHHHcccCCcEEEE
Q 009069 294 PWGQY--DGLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 294 h~~~d--~~~~L~Ei~RVLKPGG~Lvi 318 (544)
....+ ...++..+.|+|||||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 54432 37899999999999999874
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=9e-11 Score=118.77 Aligned_cols=122 Identities=12% Similarity=0.037 Sum_probs=88.7
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH--H-------
Q 009069 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL--E------- 261 (544)
Q Consensus 195 ~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~--e------- 261 (544)
..+++.....++++.+.+.+.+++ +|||||||+|.++..++.. .+.++|+++.++..+..+... .
T Consensus 130 ~~~~e~~~~~~~~~~~~~~l~~~~--~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~ 207 (328)
T d1nw3a_ 130 EVYGETSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK 207 (328)
T ss_dssp TCCCCCCHHHHHHHHHHSCCCTTC--EEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CchhhhHHHHHHHHHHHcCCCCCC--EEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccc
Confidence 345555566777788887777666 9999999999999888754 478899988766544433221 1
Q ss_pred cCCCeEEEEeccccCCCCCCCe--eEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 262 RGVPALIGVMASIRLPYPSRAF--DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 262 rgv~~~~~v~d~~~LPfpd~sF--DlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+..++.+..+|+..+++.+..| |+|+++. +.++. +....|.|+.|+|||||.++...
T Consensus 208 ~~~~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~~-~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 208 KHAEYTLERGDFLSEEWRERIANTSVIFVNN-FAFGP-EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCCCEEEEECCTTSHHHHHHHHHCSEEEECC-TTTCH-HHHHHHHHHHTTCCTTCEEEESS
T ss_pred cCCceEEEECcccccccccccCcceEEEEcc-eecch-HHHHHHHHHHHhCCCCcEEEEec
Confidence 2346889999999888877655 5676654 43443 46789999999999999998764
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.04 E-value=3.9e-10 Score=110.11 Aligned_cols=105 Identities=11% Similarity=0.127 Sum_probs=75.8
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPSR 281 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LPfpd~ 281 (544)
|...+.+++|. +|||+|||+|.++..|++. .++++|+++..+..+..++....+ .++.+...|.... ++++
T Consensus 77 Ii~~l~i~pG~--rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~ 153 (250)
T d1yb2a1 77 IIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQ 153 (250)
T ss_dssp ----CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSC
T ss_pred HHHHcCCCCcC--EEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccc
Confidence 44555666665 9999999999999998864 478888876555544444433222 3577887777654 5678
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|++. .+ ++..++.++.++|||||+|++..|
T Consensus 154 ~fD~V~ld-----~p-~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 154 MYDAVIAD-----IP-DPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp CEEEEEEC-----CS-CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred eeeeeeec-----CC-chHHHHHHHHHhcCCCceEEEEeC
Confidence 99999863 22 467889999999999999999877
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=4.3e-10 Score=107.89 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=80.1
Q ss_pred HHHHHHHhc--ccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-----CCCeEEEEec
Q 009069 205 IDDIGKLIN--LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMA 272 (544)
Q Consensus 205 i~~L~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~er-----gv~~~~~v~d 272 (544)
...+.++|. ++++. +|||||||+|..++.|++. .|+++|+++..+..+...+.... ...+.+..+|
T Consensus 63 ~a~~le~L~~~l~~g~--~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD 140 (224)
T d1i1na_ 63 HAYALELLFDQLHEGA--KALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 140 (224)
T ss_dssp HHHHHHHTTTTSCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEee
Confidence 345666663 44444 9999999999988888764 48888988876665554444322 2356778888
Q ss_pred cccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 273 SIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 273 ~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+++.||+|++..++.+.+ .++.+.|||||.|++...
T Consensus 141 ~~~~~~~~~~fD~I~~~~~~~~ip-------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 141 GRMGYAEEAPYDAIHVGAAAPVVP-------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp GGGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred cccccchhhhhhhhhhhcchhhcC-------HHHHhhcCCCcEEEEEEc
Confidence 888888888999999999886644 357889999999999643
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=6e-10 Score=109.62 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=79.0
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPY 278 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPf 278 (544)
..|..++.+.++. +|||+|||+|.++..|++. .++++|+++..+..+..++. ..+. .+.+...|. ...+
T Consensus 93 ~~Ii~~l~i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~-~~g~~~~v~~~~~d~-~~~~ 168 (266)
T d1o54a_ 93 SFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT-KWGLIERVTIKVRDI-SEGF 168 (266)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHH-HTTCGGGEEEECCCG-GGCC
T ss_pred HHHHHhhCCCCCC--EEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HhccccCcEEEeccc-cccc
Confidence 3567777777776 9999999999999999864 37888888877765554443 3343 344444443 3456
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....||.|+. +.+ ++..++.++.++|||||.|++..|
T Consensus 169 ~~~~~D~V~~-----d~p-~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 169 DEKDVDALFL-----DVP-DPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp SCCSEEEEEE-----CCS-CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred cccceeeeEe-----cCC-CHHHHHHHHHhhcCCCCEEEEEeC
Confidence 7788999874 444 478899999999999999999876
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.94 E-value=1.6e-09 Score=104.09 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=72.6
Q ss_pred cccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccCCCCCCCee
Q 009069 213 NLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS---IRLPYPSRAFD 284 (544)
Q Consensus 213 ~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~---~~LPfpd~sFD 284 (544)
.+++|+ +|||+|||+|.++.+|++. .|.++|+++.++..+. +.+..++ .......|. ...+.....+|
T Consensus 70 ~i~pG~--~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~~~-~~~~i~~d~~~~~~~~~~~~~vD 145 (227)
T d1g8aa_ 70 PIKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEERR-NIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSCT-TEEEEECCTTCGGGGTTTCCCEE
T ss_pred ccCCCC--EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHhcC-CceEEEEECCCcccccccccceE
Confidence 344544 9999999999999999875 4899999988775444 3443333 444444554 33344567899
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|++.. +.+++...++.++.++|||||+++++.
T Consensus 146 ~i~~d~---~~~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 146 VIFEDV---AQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp EEEECC---CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEc---cccchHHHHHHHHHHhcccCCeEEEEE
Confidence 998743 333445789999999999999999974
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.90 E-value=2.1e-09 Score=103.08 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=75.2
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sF 283 (544)
..+.+.+.+++++ +|||||||+|.+++.|++. .|+++|+++.....++..+ ....++.+..+|........+.|
T Consensus 60 a~ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~--~~~~nv~~~~~d~~~g~~~~~pf 135 (224)
T d1vbfa_ 60 IFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL--SYYNNIKLILGDGTLGYEEEKPY 135 (224)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH--TTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhhhcccc--eEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHH--hcccccccccCchhhcchhhhhH
Confidence 4566777777766 9999999999999998886 5777777665444333222 23456788888765544456789
Q ss_pred eEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|.|++..++.+.+ ..+.+.|||||+|++-.
T Consensus 136 D~Iiv~~a~~~ip-------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 136 DRVVVWATAPTLL-------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp EEEEESSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred HHHHhhcchhhhh-------HHHHHhcCCCCEEEEEE
Confidence 9999988876554 24567899999999853
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=4.2e-09 Score=106.32 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=76.8
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-----------CCCeEEE
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER-----------GVPALIG 269 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~er-----------gv~~~~~ 269 (544)
..|..++.+.+|. +|||+|||+|.++..|++. .|.++|+++..+..++.++.... ..++.+.
T Consensus 88 ~~Il~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 88 NMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHhCCCCCC--EEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 3566677777777 9999999999999999875 38888888776665555443211 1246777
Q ss_pred EeccccCC--CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 270 VMASIRLP--YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 270 v~d~~~LP--fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..|..... +++..||.|+. ..+ ++..++.++.++|||||.|++-.|
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p-~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DML-NPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSS-STTTTHHHHGGGEEEEEEEEEEES
T ss_pred ecchhhcccccCCCCcceEee-----cCc-CHHHHHHHHHHhccCCCEEEEEeC
Confidence 77765543 45778999986 233 356789999999999999999877
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=5.4e-09 Score=103.12 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=86.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
..+|||+|||+|..+..++.. .++++|+++..+.-++.+ +...++ ++.+...|... ++++++||+|+|+.-..
T Consensus 109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~N-a~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN-AQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH-HHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHH-HHHhCcccceeeeccccc-ccCCCceeEEEecchhh
Confidence 447999999999999988764 678888888777655543 444555 47887777543 45678999999987553
Q ss_pred cccc----------Ch--------------HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHH
Q 009069 294 PWGQ----------YD--------------GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETI 349 (544)
Q Consensus 294 h~~~----------d~--------------~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~l 349 (544)
+-.+ ++ ..++.++.+.|+|||.+++.....+ .+.+.++
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q------------------~~~v~~~ 248 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQ------------------GEAVRQA 248 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSC------------------HHHHHHH
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchH------------------HHHHHHH
Confidence 3210 00 2578899999999999999854211 2346678
Q ss_pred HHhhcceeeee
Q 009069 350 ARSLCWKKLIQ 360 (544)
Q Consensus 350 a~~l~w~~v~~ 360 (544)
+++.+|..+..
T Consensus 249 l~~~gf~~i~~ 259 (274)
T d2b3ta1 249 FILAGYHDVET 259 (274)
T ss_dssp HHHTTCTTCCE
T ss_pred HHHCCCCeEEE
Confidence 88888875543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=5.7e-09 Score=108.25 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=82.2
Q ss_pred CCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH------cC
Q 009069 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE------RG 263 (544)
Q Consensus 194 g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e------rg 263 (544)
+..+++-.-.++.++.+.+.+++++ +|||||||+|.++..++.. .++++|+++.++..+..+.... .+
T Consensus 194 ~~vYGEl~~~~i~~Il~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g 271 (406)
T d1u2za_ 194 NYVYGELLPNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG 271 (406)
T ss_dssp GGCCCCBCHHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccccCCHHHHHHHHHHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhc
Confidence 3446666777888888888887776 9999999999999988864 4788999887776555433221 11
Q ss_pred ---CCeEEE-EeccccCCCC---CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 264 ---VPALIG-VMASIRLPYP---SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 264 ---v~~~~~-v~d~~~LPfp---d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
....+. ..+....++. -..+|+|+++. + ++.++....|.++.|+|||||.++.+.
T Consensus 272 ~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~-~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 272 MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-F-LFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp BCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-T-TCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccccceeeeeechhhccccccccccceEEEEec-c-cCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 122222 2222222211 12468888754 3 233446889999999999999998864
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.74 E-value=1.3e-08 Score=97.03 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=79.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYP 279 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LPfp 279 (544)
....+.+.+.++++. +|||||||+|..++.|++. .|++++..+.....+...+. +.+ .++.+..+|.......
T Consensus 66 ~~a~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~-~~g~~nv~~~~gd~~~g~~~ 142 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLE-RAGVKNVHVILGDGSKGFPP 142 (215)
T ss_dssp HHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCGGGCCGG
T ss_pred hHHHHHHhhccCccc--eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHH-HcCCceeEEEECccccCCcc
Confidence 445677788877776 8999999999999888764 48888887654544444333 344 4688888887766666
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+.||.|++..+..+.++ .+...|||||.+++..
T Consensus 143 ~~pfD~Iiv~~a~~~ip~-------~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKIPE-------PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp GCCEEEEEECSBBSSCCH-------HHHHTEEEEEEEEEEE
T ss_pred cCcceeEEeecccccCCH-------HHHHhcCCCCEEEEEE
Confidence 788999999888865443 2556799999999864
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=8.4e-08 Score=93.62 Aligned_cols=126 Identities=11% Similarity=0.052 Sum_probs=84.4
Q ss_pred cCCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHH
Q 009069 184 QGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFAL 260 (544)
Q Consensus 184 ~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ 260 (544)
.|-.|.+.-..++|..+.......+.+.+ .++. +|||+|||+|.++..++++ .|+++|+++..+..+. +.+.
T Consensus 77 ~g~~~~~d~~~~~f~~~~~~er~ri~~~~--~~g~--~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~-~N~~ 151 (260)
T d2frna1 77 NGIKYKLDVAKIMFSPANVKERVRMAKVA--KPDE--LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV-ENIH 151 (260)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHHHHHC--CTTC--EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHH-HHHH
T ss_pred cCeeEEeccccccEecCCHHHHHHHHhhc--CCcc--EEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHH-HHHH
Confidence 34344443344455555444444555553 3444 9999999999999988865 4788888886664443 3344
Q ss_pred HcCC--CeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 261 ERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 261 ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+++ .+.+..+|+..++ +.+.||.|++.. +.....++.++.++|++||.+.+..
T Consensus 152 ~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~-----p~~~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 152 LNKVEDRMSAYNMDNRDFP-GENIADRILMGY-----VVRTHEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp HTTCTTTEEEECSCTTTCC-CCSCEEEEEECC-----CSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred HhCCCceEEEEEcchHHhc-cCCCCCEEEECC-----CCchHHHHHHHHhhcCCCCEEEEEe
Confidence 4555 3677788887765 457899998753 1223678899999999999987653
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.68 E-value=3e-08 Score=94.82 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=75.3
Q ss_pred HHHHHHHh--cccCCCCCEEEEeCCCCcHHHHHHhhC----------CcEEEeCCccchHHHHHHHHH-----HcCCCeE
Q 009069 205 IDDIGKLI--NLKDGSIRTAIDTGCGVASWGAYLMSR----------NILAVSFAPRDTHEAQVQFAL-----ERGVPAL 267 (544)
Q Consensus 205 i~~L~~lL--~l~~g~~r~VLDIGCGtG~~a~~La~~----------~V~~vdisp~dls~a~v~~A~-----ergv~~~ 267 (544)
...+.+.+ .++++. +|||||||+|.+++.|++. .|+++|+.+..+..++..... ....++.
T Consensus 67 ~a~~l~~L~~~l~~g~--~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~ 144 (223)
T d1r18a_ 67 HAFALEYLRDHLKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL 144 (223)
T ss_dssp HHHHHHHTTTTCCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEE
Confidence 34556666 355554 9999999999998888764 277888866555444333211 1123678
Q ss_pred EEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 268 ~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+..+|......+.+.||.|++..++.+.++ .+.+.|||||.+++..
T Consensus 145 ~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~-------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 145 IVEGDGRKGYPPNAPYNAIHVGAAAPDTPT-------ELINQLASGGRLIVPV 190 (223)
T ss_dssp EEESCGGGCCGGGCSEEEEEECSCBSSCCH-------HHHHTEEEEEEEEEEE
T ss_pred EEecccccccccccceeeEEEEeechhchH-------HHHHhcCCCcEEEEEE
Confidence 888888776667789999999998855442 4678999999998864
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.55 E-value=3.8e-08 Score=91.71 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=36.2
Q ss_pred CCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
.+.+.||+|+|.++|+.+.+.. ..++..+.+.|+|||+|++-
T Consensus 128 ~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 128 NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3457899999999998887644 78999999999999998875
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.52 E-value=8.4e-08 Score=92.74 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=72.8
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
+.+.+.+.. ....++|||||||+|.++..++++ + +++.|+ . ..++.+. ....+.+..+|... +.|
T Consensus 70 ~~l~~~~~~-f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-----p-~vi~~~~-~~~ri~~~~gd~~~-~~p-- 138 (244)
T d1fp1d2 70 KRMLEIYTG-FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-----P-QVIENAP-PLSGIEHVGGDMFA-SVP-- 138 (244)
T ss_dssp HHHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----H-HHHTTCC-CCTTEEEEECCTTT-CCC--
T ss_pred HHHHHhccc-ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-----h-hhhhccC-CCCCeEEecCCccc-ccc--
Confidence 344444432 133568999999999999999886 3 445555 2 2222111 12357777777543 444
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 282 AFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..|++++..++|+|.++. ..+|+++.+.|+|||.++|.+
T Consensus 139 ~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 139 QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 359999999999998755 689999999999999999975
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.52 E-value=2.3e-07 Score=92.92 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=73.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc----CCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR----LPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~----LPfpd~sFDlV~~~~~ 291 (544)
+.+|||++||+|.++.+++.. .|+++|+++..+..+..+. ..+|+ ++.+..+|... ++...++||+|++..-
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~-~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP 224 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENA-RLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 224 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHH-HHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHH-HHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence 559999999999999988754 6888999888776665444 44565 57788887543 3445678999998542
Q ss_pred ccccccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-...... ...++..+.++|||||.|+++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2111111 13578889999999999999865
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.49 E-value=2.2e-07 Score=84.80 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc----
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASI---- 274 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~---- 274 (544)
.+...+.+..++...-..+.+|||+|||+|.++..++.++ ++++|+++..+..+..+ +...++...+...+..
T Consensus 24 ~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N-~~~~~~~~~v~~~~~d~~~~ 102 (171)
T d1ws6a1 24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN-VRRTGLGARVVALPVEVFLP 102 (171)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH-HHHHTCCCEEECSCHHHHHH
T ss_pred cHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHH-HHhhccccceeeeehhcccc
Confidence 3434445555555333334589999999999999988875 55666666555433333 3344665555554432
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHH--HcccCCcEEEEEeC
Q 009069 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVD--RVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~--RVLKPGG~Lvis~p 321 (544)
.......+||+|++..-+ ..+....+.++. ..|+|||++++..+
T Consensus 103 ~~~~~~~~fD~If~DPPY---~~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 103 EAKAQGERFTVAFMAPPY---AMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHTTCCEEEEEECCCT---TSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cccccCCccceeEEcccc---ccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 223456789999997633 223334444443 47999999999764
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.43 E-value=4.2e-07 Score=91.15 Aligned_cols=102 Identities=13% Similarity=0.053 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc----CCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR----LPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~----LPfpd~sFDlV~~~ 289 (544)
+.+|||+|||+|.++..++.. .|+++|+++..+..+..+ +..+|+ .+.+.++|... ++....+||+|++.
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N-~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKEN-AKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHH-HHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 348999999999999999876 478888888766555543 444565 46777777543 34456789999985
Q ss_pred ccccccccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.-...-... -..++..+.++|||||.|+++..
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 432111111 13578889999999999999875
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.33 E-value=1.9e-07 Score=83.50 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LPfpd~sFDlV~~~~~l 292 (544)
+.+|||+|||+|.++...+.+| |+++|.++..+...+.. +...+. .+.+..+|+.. +....++||+|++..
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n-~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP-- 91 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDN-IIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP-- 91 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHH-HHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC--
T ss_pred CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhh-hhhcccccchhhhcccccccccccccccceeEech--
Confidence 5589999999999999887774 68888877655444433 333343 36777777554 345578899999865
Q ss_pred cccccCh-HHHHHHHH--HcccCCcEEEEEeC
Q 009069 293 IPWGQYD-GLYLIEVD--RVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~-~~~L~Ei~--RVLKPGG~Lvis~p 321 (544)
++.... ...+..+. ++|+|||.+++..+
T Consensus 92 -Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 92 -PYAKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp -SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -hhccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 222222 45555553 57999999999754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.32 E-value=7.5e-07 Score=83.38 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=52.3
Q ss_pred CCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 216 DGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
+-++++|||+|||+|.++..++.+ .|+++|+++ .+++.|+++...+.+...|...++ +.||+|+++.-+
T Consensus 46 dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~-----~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 46 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDP-----DAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCH-----HHHHHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence 334679999999999988777765 377777754 455666666667888888887764 679999998744
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.29 E-value=7e-06 Score=76.48 Aligned_cols=71 Identities=8% Similarity=-0.039 Sum_probs=52.4
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
++.+|||+|||+|.++..++.+ .|+++|+++..+..+.. .+...+....+...|...+ ++.||+|+++.-+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~-N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIE-NLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHH-HHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence 4568999999999999888776 36888887765544433 2334567788888777665 4679999998855
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.27 E-value=1.6e-06 Score=86.62 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEecccc----CCCCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIR----LPYPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~----LPfpd~sFDlV~~ 288 (544)
+++|||+.||+|.++..++.. .|+++|+++..+..+..+... +++ .+.+..+|+.. +.-..+.||+|++
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~-n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA-NHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH-TTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHH-hcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 448999999999999887764 478999999877666655543 443 46788887632 2234568999998
Q ss_pred ccccc--------ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCLI--------PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~--------h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-.--. ....+-..++..+.++|+|||.|+++..
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 43210 0111114688889999999999999875
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.22 E-value=7.4e-07 Score=85.89 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
..+|||||||+|.++..++++ .+++.|+ +..++.+. ....+.+..+|... +.+ .+|++++..++|+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~vi~~~~-~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHd 150 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR------PQVVENLS-GSNNLTYVGGDMFT-SIP--NADAVLLKYILHN 150 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC------HHHHTTCC-CBTTEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC------HHHHHhCc-ccCceEEEecCccc-CCC--CCcEEEEEeeccc
Confidence 458999999999999999886 3455565 22222221 12357888777654 333 5799999999999
Q ss_pred cccCh-HHHHHHHHHcccCC---cEEEEEe
Q 009069 295 WGQYD-GLYLIEVDRVLRPG---GYWILSG 320 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPG---G~Lvis~ 320 (544)
|.++. ..+|+.+.+.|+|| |.++|..
T Consensus 151 w~d~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 151 WTDKDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 99855 68999999999998 7777765
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.20 E-value=4.3e-06 Score=81.75 Aligned_cols=117 Identities=14% Similarity=0.111 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccc-
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIR- 275 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~- 275 (544)
+..++.+.+.+.... ..++||+|||+|..+..+++. .++++|+++..+.-++.+ +...+.. ..+...+...
T Consensus 96 E~lv~~~~~~~~~~~--~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~N-a~~~~~~~~~~i~~~~~~~~ 172 (271)
T d1nv8a_ 96 EELVELALELIRKYG--IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKN-AERHGVSDRFFVRKGEFLEP 172 (271)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHH-HHHTTCTTSEEEEESSTTGG
T ss_pred hhhhhhhhhhhcccc--ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHH-HHHcCCCceeEEeecccccc
Confidence 444455555544333 337999999999888777654 588899988777555543 4445543 4444444322
Q ss_pred CCCCCCCeeEEEecccccccc------------------cChHHHH-HHHHHcccCCcEEEEEeC
Q 009069 276 LPYPSRAFDMAHCSRCLIPWG------------------QYDGLYL-IEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~------------------~d~~~~L-~Ei~RVLKPGG~Lvis~p 321 (544)
++...+.||+|+|+.-.+.-. .+.-.++ +-+.+.|+|||.+++...
T Consensus 173 ~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 173 FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 222346899999986433211 0111222 225678999999999865
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.13 E-value=2e-06 Score=81.21 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=65.9
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-----CCCCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-----YPSRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L-P-----fpd~sFDlV 286 (544)
++|||||||+|..+..|++. .++++|+++.....++..+ ...|. .+.+..++.... + +..+.||+|
T Consensus 58 k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~-~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i 136 (214)
T d2cl5a1 58 SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML-NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 136 (214)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH-HHcCCCccceeeeccccccccchhhccccccccee
Confidence 38999999999999999864 4788888776554444333 33444 477888775432 2 456789999
Q ss_pred EecccccccccCh--HHHHHHHHHcccCCcEEEEE
Q 009069 287 HCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 287 ~~~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvis 319 (544)
+.-. +.+.. ...+.+..++|||||.+++.
T Consensus 137 fiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 137 FLDH----WKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EECS----CGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred eecc----cccccccHHHHHHHhCccCCCcEEEEe
Confidence 9753 22211 34678888999999987765
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.10 E-value=8.9e-07 Score=85.03 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=67.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
.++|||||||+|.++..++++ .+++.|+... + +.+. ....+.+...|... +.|. .|+++...++|.
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-----~~~~-~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~ 151 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-----EDAP-SYPGVEHVGGDMFV-SIPK--ADAVFMKWICHD 151 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-----TTCC-CCTTEEEEECCTTT-CCCC--CSCEECSSSSTT
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-----hhcc-cCCceEEecccccc-cCCC--cceEEEEEEeec
Confidence 468999999999999999986 4566676332 1 1111 12356777666533 4443 467778899999
Q ss_pred cccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 295 WGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|.++. ..+|+++.+.|+|||.++|.+.
T Consensus 152 ~~d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 152 WSDEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp SCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 98644 7899999999999999999753
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=2.9e-05 Score=73.30 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=68.4
Q ss_pred EEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CC-----CCCCCeeEEE
Q 009069 221 TAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-----YPSRAFDMAH 287 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LP-----fpd~sFDlV~ 287 (544)
+|||||||+|..+..+++. .++++|.++.....++..+. +.|. .+.+..+++.. ++ ...++||+|+
T Consensus 62 ~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~-~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~if 140 (219)
T d2avda1 62 KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWR-QAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAV 140 (219)
T ss_dssp EEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEE
T ss_pred eEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHH-hcCccceEEEEEeehhhcchhhhhhcccCCccEEE
Confidence 8999999999999999874 57888887765544443333 3343 46777776433 21 3467899999
Q ss_pred ecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 288 ~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
... ....-..++..+.+.|+|||.+++..
T Consensus 141 iD~----dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 141 VDA----DKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp ECS----CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EeC----CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 743 33334678999999999999999974
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=1.3e-05 Score=73.49 Aligned_cols=131 Identities=10% Similarity=0.070 Sum_probs=78.8
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHH
Q 009069 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE 261 (544)
Q Consensus 185 ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~e 261 (544)
|..+..|.+.. .....+...+.+..++... -.+.+|||++||+|.++...+.+| |+.+|.++..+.....+...
T Consensus 12 g~~l~~~~~~~-~RPt~~~vre~lfn~l~~~-~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~- 88 (183)
T d2fpoa1 12 GRKLPVPDSPG-LRPTTDRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLAT- 88 (183)
T ss_dssp TCEEECCCC-------CHHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHH-
T ss_pred CCEecCCCCCC-cCcCcHHHHHHHHhhhhcc-cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhh-
Confidence 33444544322 1223333444455555321 123489999999999999988874 77788877655544443332
Q ss_pred cCC-CeEEEEecccc-CCCCCCCeeEEEecccccccccCh-HHHHHHHHH--cccCCcEEEEEeC
Q 009069 262 RGV-PALIGVMASIR-LPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDR--VLRPGGYWILSGP 321 (544)
Q Consensus 262 rgv-~~~~~v~d~~~-LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~R--VLKPGG~Lvis~p 321 (544)
.+. ...+...|+.. +......||+|++.. ++.... ...+..+.+ .|+++|.+++..+
T Consensus 89 ~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP---PY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 89 LKAGNARVVNSNAMSFLAQKGTPHNIVFVDP---PFRRGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp TTCCSEEEECSCHHHHHSSCCCCEEEEEECC---SSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccccceeeeeecccccccccccccCEEEEcC---ccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 333 45666666433 344577899999977 333322 566666654 6999999999753
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.04 E-value=4.4e-06 Score=77.62 Aligned_cols=115 Identities=10% Similarity=0.113 Sum_probs=75.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC---
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--- 276 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L--- 276 (544)
.++++.+++...++. ++||++||+|..+..++++ .++++|.++.++..++..+. .-+..+.+..++...+
T Consensus 11 ll~evi~~l~~~~~~--~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~-~~~~r~~~~~~~f~~~~~~ 87 (192)
T d1m6ya2 11 MVREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK-EFSDRVSLFKVSYREADFL 87 (192)
T ss_dssp THHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG-GGTTTEEEEECCGGGHHHH
T ss_pred HHHHHHHhhCCCCCC--EEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhc-cccccccchhHHHhhHHHH
Confidence 345666777665554 8999999999999999875 46777776655543332221 1234577777765443
Q ss_pred --CCCCCCeeEEEeccccc--cccc------ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 --PYPSRAFDMAHCSRCLI--PWGQ------YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 --Pfpd~sFDlV~~~~~l~--h~~~------d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+..++||.|+.-..+. ++.. .....|..+.++|+|||.+++...
T Consensus 88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 24467899998643321 1111 125789999999999999998864
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=3.2e-05 Score=74.40 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcc---cCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEe
Q 009069 201 ADAYIDDIGKLINL---KDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVM 271 (544)
Q Consensus 201 a~~~i~~L~~lL~l---~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~ 271 (544)
...|+..+.+++.. ......+|||+|||+|..+..|+.+ .++++|+++..+.-++.... ..++. +.+...
T Consensus 41 r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~-~n~l~~~~~~~~~ 119 (250)
T d2h00a1 41 RLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE-QNNLSDLIKVVKV 119 (250)
T ss_dssp HHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEEC
T ss_pred HHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHH-HhCCCcceeeeee
Confidence 34455556666542 2233458999999999888888765 68889998877765555443 34443 444433
Q ss_pred ccccC------CCCCCCeeEEEecccccc
Q 009069 272 ASIRL------PYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 272 d~~~L------Pfpd~sFDlV~~~~~l~h 294 (544)
+.... ...+++||+|+|+.-+++
T Consensus 120 ~~~~~~~~~~~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 120 PQKTLLMDALKEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp CTTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred ccHHhhhhhhhhcccCceeEEEecCcccc
Confidence 32221 123568999999886653
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.93 E-value=1.5e-05 Score=78.87 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=69.9
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHC 288 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~ 288 (544)
.+.+|||.|||+|.++..+.++ .+.++|+++..+..+..... ..+....+...+.... .+...||+|++
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~-~~~~~fD~vi~ 194 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLAN-LLVDPVDVVIS 194 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH-Hhhhhhhhhccccccc-ccccccccccc
Confidence 3458999999999998887542 36788887765554444333 3355666666654433 35678999999
Q ss_pred cccccccccCh-----------------HHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCLIPWGQYD-----------------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~h~~~d~-----------------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.-+....... ..++..+.+.|+|||++++..|
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 87552221100 2478889999999999999877
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.92 E-value=2.6e-05 Score=71.94 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
....+.+.+++....+. +|||.|||+|.|...+.++ .+.++|+++.... ......+...+....
T Consensus 5 ~~i~~~m~~l~~~~~~~--~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~---------~~~~~~~~~~~~~~~ 73 (223)
T d2ih2a1 5 PEVVDFMVSLAEAPRGG--RVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD---------LPPWAEGILADFLLW 73 (223)
T ss_dssp HHHHHHHHHHCCCCTTC--EEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC---------CCTTEEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCCcC--EEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh---------hcccceeeeeehhcc
Confidence 34556677777655544 8999999999998888653 4788888664331 112345555555443
Q ss_pred CCCCCCeeEEEecccccccccC----------------------------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQY----------------------------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d----------------------------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ....||+|+++.-+...... ...++..+.+.|+|||++++..|
T Consensus 74 ~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 74 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 3 45789999997755321100 03567889999999999999986
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.89 E-value=3e-05 Score=70.96 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=81.4
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHH
Q 009069 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE 261 (544)
Q Consensus 185 ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~e 261 (544)
|..+.+|.+.. .....+..-+.+-.++... -.+.+|||++||+|.++...+.+| ++.+|.++..+.........
T Consensus 10 g~~l~~~~~~~-~RPt~~~vrealFn~l~~~-~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~- 86 (182)
T d2fhpa1 10 GRRLKALDGDN-TRPTTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAI- 86 (182)
T ss_dssp TCBCCCCCCCS-SCCCCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-
T ss_pred CCEecCCCCCC-cCcCcHHHHHHHHHHHHHh-cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhh-
Confidence 33444444322 2333444555566666422 234589999999999999988874 67788876555443333322
Q ss_pred cCC--CeEEEEecccc----CCCCCCCeeEEEecccccccccC-hHHHHHHHHH--cccCCcEEEEEeC
Q 009069 262 RGV--PALIGVMASIR----LPYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDR--VLRPGGYWILSGP 321 (544)
Q Consensus 262 rgv--~~~~~v~d~~~----LPfpd~sFDlV~~~~~l~h~~~d-~~~~L~Ei~R--VLKPGG~Lvis~p 321 (544)
.+. ...+...|+.. +.-....||+|++-. ++..+ ....+..+.. +|+++|.+++..+
T Consensus 87 ~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 87 TKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP---PYAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhcccccccccccchhhhhhhcccCCCcceEEech---hhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 233 46777777543 222456899999876 33332 2567777654 6999999998754
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.86 E-value=1.5e-05 Score=79.25 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=66.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC---CeEEEEeccccC----CCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRL----PYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~L----Pfpd~sFDlV~~~ 289 (544)
+.+|||++||+|.++.+++..+ |+.+|++...+..+..+.... ++ .+.+.+.|+... ....+.||+|++.
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln-~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD 211 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLA-GLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 211 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH-TCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhh-cccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence 4489999999999999998875 667777766665555444433 33 477888775432 2235789999984
Q ss_pred cccc-------ccc--cChHHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLI-------PWG--QYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~-------h~~--~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.--. .+. .+...++..+.++|+|||.+++..
T Consensus 212 PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 212 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3210 111 111356667888999999766653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.76 E-value=1.9e-05 Score=77.19 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=72.1
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHH----------HcCCCeEEEE
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFAL----------ERGVPALIGV 270 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~----------ergv~~~~~v 270 (544)
|-+.+....-...+..++||.||+|.|..+..+++. .++++++++..+..+..-+.. .....+.+..
T Consensus 58 Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~ 137 (276)
T d1mjfa_ 58 YHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI 137 (276)
T ss_dssp HHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE
T ss_pred HHHHhhcchhhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE
Confidence 444444332223344568999999999999998876 367788866544332211100 0124577777
Q ss_pred eccccCCCCCCCeeEEEecccccccccCh----HHHHHHHHHcccCCcEEEEEe
Q 009069 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 271 ~d~~~LPfpd~sFDlV~~~~~l~h~~~d~----~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.|+...--.+++||+|+.-. ..+..... ..+++.+.+.|+|||.+++..
T Consensus 138 ~Da~~~l~~~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 138 GDGFEFIKNNRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp SCHHHHHHHCCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHHHHhccCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 77543222357899999733 22322111 689999999999999999864
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.63 E-value=5.4e-05 Score=75.14 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=70.1
Q ss_pred CCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEecccc-CCCCCCCeeE
Q 009069 216 DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE-----RGVPALIGVMASIR-LPYPSRAFDM 285 (544)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e-----rgv~~~~~v~d~~~-LPfpd~sFDl 285 (544)
.+..++||.||.|.|..+..+++. .++++++++..+..+...+... ....+.+..+|+.. +.-.+++||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 344568999999999999998765 4788888775554333333221 22457777777543 2224568999
Q ss_pred EEecccccccccC-------hHHHHHHHHHcccCCcEEEEEe
Q 009069 286 AHCSRCLIPWGQY-------DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 286 V~~~~~l~h~~~d-------~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|+.-. ..++..+ ...+++.+.+.|+|||.|++..
T Consensus 155 Ii~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 155 VIIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 99633 2222211 1589999999999999999864
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.56 E-value=9.8e-05 Score=69.98 Aligned_cols=96 Identities=11% Similarity=0.039 Sum_probs=67.5
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CC------CCCCCeeE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP------YPSRAFDM 285 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LP------fpd~sFDl 285 (544)
++||+||+++|..+..|++. .+++++.++.....+.. ...+.|. .+.+..+++.. ++ ...++||+
T Consensus 61 k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~-~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~ 139 (227)
T d1susa1 61 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP-VIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 139 (227)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSE
T ss_pred CcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHH-HHHHhccccceeeeehHHHHHHHHHHhccccCCceeE
Confidence 38999999999999888853 57888887755543333 3334454 36777776432 22 13568999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|+.- +....-..++..+.+.|+|||.+++..
T Consensus 140 iFiD----a~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 140 IFVD----ADKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEEC----SCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred EEec----cchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 9963 344444789999999999999999983
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.51 E-value=0.00029 Score=68.99 Aligned_cols=115 Identities=15% Similarity=0.096 Sum_probs=74.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH----HcCCCeEEEEecccc-C
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIR-L 276 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~----ergv~~~~~v~d~~~-L 276 (544)
+.+........+..++||=||-|.|..+..+++. .++++++++..+..+..-+.. .....+.+...|... +
T Consensus 68 e~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l 147 (290)
T d1xj5a_ 68 EMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFL 147 (290)
T ss_dssp HHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHH
T ss_pred HHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHH
Confidence 3343333233345668999999999999999876 478888877555433322211 113567777777432 2
Q ss_pred -CCCCCCeeEEEecccccccccCh----HHHHHHHHHcccCCcEEEEEeC
Q 009069 277 -PYPSRAFDMAHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 -Pfpd~sFDlV~~~~~l~h~~~d~----~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+++||+|+.-. ..+..... ..+++.+.+.|+|||.++....
T Consensus 148 ~~~~~~~yDvIi~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 148 KNAAEGSYDAVIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp HTSCTTCEEEEEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred hhccccCccEEEEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 23456899999732 22222111 6899999999999999999864
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=0.00031 Score=64.08 Aligned_cols=109 Identities=19% Similarity=0.160 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI 274 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~ 274 (544)
.+-..+.+|.+...+- ..+.+|||+||+.|+|..++.++ .+.++|+.+.. .-....+..+|..
T Consensus 5 RaafKL~EI~~k~~l~-k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i~~~~~~~~d~~ 72 (180)
T d1ej0a_ 5 RAWFKLDEIQQSDKLF-KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PIVGVDFLQGDFR 72 (180)
T ss_dssp HHHHHHHHHHHHHCCC-CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CCTTEEEEESCTT
T ss_pred HHHHHHHHHHHHhCcc-CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------ccCCceEeecccc
Confidence 3444455666666543 22448999999999999998874 47778875531 1223555555543
Q ss_pred cCC--------CCCCCeeEEEecccccccccCh-----------HHHHHHHHHcccCCcEEEEEeC
Q 009069 275 RLP--------YPSRAFDMAHCSRCLIPWGQYD-----------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LP--------fpd~sFDlV~~~~~l~h~~~d~-----------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
... .....||+|+|-.+. ...... ...+.-+.++||+||.|++-..
T Consensus 73 ~~~~~~~~~~~~~~~~~DlVlSD~ap-~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 73 DELVMKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp SHHHHHHHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhhhhhhhccCcceeEEEecccc-hhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 211 235679999997665 222111 2456678899999999999854
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.40 E-value=0.00037 Score=68.42 Aligned_cols=104 Identities=10% Similarity=0.041 Sum_probs=69.7
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEE
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIR-LPYPSRAFDMAH 287 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e----rgv~~~~~v~d~~~-LPfpd~sFDlV~ 287 (544)
+..++||-||.|.|..+..+++. .++++++++..+..+..-+... ....+.+...|+.. +.-.+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 34568999999999999999875 4788899776554333222221 13457777777432 223457899999
Q ss_pred eccccccccc-----ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQ-----YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~-----d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+-. ..+... ....+++.+.+.|+|||.|+....
T Consensus 168 ~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 168 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 743 222211 126899999999999999998754
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.00034 Score=68.35 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=68.7
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH----HcCCCeEEEEecccc-CCCCCCCeeEEE
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIR-LPYPSRAFDMAH 287 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~----ergv~~~~~v~d~~~-LPfpd~sFDlV~ 287 (544)
...++||-||-|.|..+..+.+. .+++++|++..+..++.-+.. .....+.+...|+.. +.-..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 44568999999999999999875 467788877555433332211 123467788777432 223456899999
Q ss_pred ecccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 288 CSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 288 ~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+-. ..+.... ...+++.+.+.|+|||.+++..
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 743 3222211 1478999999999999999975
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.36 E-value=0.00035 Score=67.84 Aligned_cols=104 Identities=9% Similarity=0.110 Sum_probs=70.9
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEE
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIR-LPYPSRAFDMAH 287 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e----rgv~~~~~v~d~~~-LPfpd~sFDlV~ 287 (544)
...++||-||-|.|..++.+++. .+++++|++.-+..+..-+... ....+.+...|... +--.+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 34568999999999999999875 4788899776554333322211 12457777777433 223467899999
Q ss_pred eccccccccc----ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQ----YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~----d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.-. ..+... ....+++.+.+.|+|||.|+....
T Consensus 154 ~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 154 VDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp ESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 743 222211 126899999999999999998753
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.36 E-value=0.00022 Score=67.74 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc---CCCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~er---gv~~~~~v~d~~~L 276 (544)
...++.|.+.+....++ +|||||||+|.++..|++. .++++++++... +...++ ..++.+..+|+...
T Consensus 7 ~~i~~~iv~~~~~~~~d--~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~-----~~l~~~~~~~~n~~i~~~D~l~~ 79 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHD--NIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLC-----KTTENKLVDHDNFQVLNKDILQF 79 (235)
T ss_dssp HHHHHHHHTTCCCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEECSCHHHH-----HHHHHHTTTCCSEEEECCCGGGC
T ss_pred HHHHHHHHHhcCCCCCC--eEEEECCCchHHHHHHHhCcCceEEEeeccchH-----HHHHHHhhcccchhhhhhhhhhc
Confidence 34566777777665555 8999999999999999986 577777755433 333332 34688899999988
Q ss_pred CCCCCCeeEEEecc
Q 009069 277 PYPSRAFDMAHCSR 290 (544)
Q Consensus 277 Pfpd~sFDlV~~~~ 290 (544)
+++......|+++.
T Consensus 80 ~~~~~~~~~vv~NL 93 (235)
T d1qama_ 80 KFPKNQSYKIFGNI 93 (235)
T ss_dssp CCCSSCCCEEEEEC
T ss_pred cccccccceeeeee
Confidence 87766555677766
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.31 E-value=0.00025 Score=70.21 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=65.3
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH----HcCCCeEEEEecccc-CCCCCCCeeEEE
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIR-LPYPSRAFDMAH 287 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~----ergv~~~~~v~d~~~-LPfpd~sFDlV~ 287 (544)
+..++||-||-|.|..+..+++. .++++++++..+..+..-+.. .....+.+...|+.. +.-..++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 34568999999999999999875 477788866444322211111 112356777666432 222457899999
Q ss_pred ecccccccccC----hHHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.-.. .+.... ...+++.+.+.|+|||.++....
T Consensus 185 ~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 185 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 7432 222111 15889999999999999999754
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00081 Score=66.76 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=82.1
Q ss_pred eecCCceecCCCCCCCccc---HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHH
Q 009069 182 RFQGDRFSFPGGGTMFPRG---ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQV 256 (544)
Q Consensus 182 ~~~ge~~~F~g~g~~F~~g---a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v 256 (544)
...|-.|.+ +.+.+|... .+.+++.+.+++....++ +|||+-||+|.|+..|+++ .|+++++++..+..+..
T Consensus 176 ~~~g~~~~i-~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~--~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~ 252 (358)
T d1uwva2 176 DSNGLRLTF-SPRDFIQVNAGVNQKMVARALEWLDVQPED--RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 252 (358)
T ss_dssp EETTEEEEC-CSSSCCCSBHHHHHHHHHHHHHHHTCCTTC--EEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHH
T ss_pred ecCCEEEEE-CCchhhccchhhhhHHHHHHHHhhccCCCc--eEEEecccccccchhccccccEEEeccCcHHHHHHHHH
Confidence 333333444 233444433 444455566666544444 8999999999999999986 68888988866654444
Q ss_pred HHHHHcCC-CeEEEEeccccC----CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 257 QFALERGV-PALIGVMASIRL----PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 257 ~~A~ergv-~~~~~v~d~~~L----Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
.+..+++ ++.+..++.... +.....||+|+...-... ....+..+.+ ++|.-.++++-.|
T Consensus 253 -na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G----~~~~~~~l~~-~~~~~ivYVSCnp 317 (358)
T d1uwva2 253 -NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG----AAGVMQQIIK-LEPIRIVYVSCNP 317 (358)
T ss_dssp -HHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC----CHHHHHHHHH-HCCSEEEEEESCH
T ss_pred -hHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCCCcc----HHHHHHHHHH-cCCCEEEEEeCCH
Confidence 4445555 577777765432 223567999987553211 1346666665 4787788888543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.25 E-value=0.0021 Score=60.97 Aligned_cols=95 Identities=7% Similarity=0.037 Sum_probs=61.8
Q ss_pred CCEEEEeCCCCcHHHHHHhh----CCcEEEeCCccchHHHHHH-HHHHcCC-CeEEEEeccccCCC---CCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMS----RNILAVSFAPRDTHEAQVQ-FALERGV-PALIGVMASIRLPY---PSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~----~~V~~vdisp~dls~a~v~-~A~ergv-~~~~~v~d~~~LPf---pd~sFDlV~~~ 289 (544)
..+++|||+|.|--|.-|+- ..++.+|-...-. +.++ .+.+-++ ++.+....++.+.. ..+.||+|+|.
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~--~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI--TFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH--HHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH--HHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 45899999999965555543 3566677644322 2222 2334455 45555555555432 23579999996
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+. ....++.-....+++||.+++--
T Consensus 149 Ava-----~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 149 AVA-----RLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp CCS-----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hhh-----CHHHHHHHHhhhcccCCEEEEEC
Confidence 533 35789999999999999999873
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.22 E-value=0.00039 Score=71.19 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh-----------------CCcEEEeCCccchHHHHHHHHHHc
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-----------------RNILAVSFAPRDTHEAQVQFALER 262 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-----------------~~V~~vdisp~dls~a~v~~A~er 262 (544)
.....++.+.+++....+ .+|||..||+|.|...+.+ ..+.+.|+++....-+...... +
T Consensus 146 TP~~Iv~~mv~ll~~~~~--~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l-~ 222 (425)
T d2okca1 146 TPRPLIQAMVDCINPQMG--ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-H 222 (425)
T ss_dssp CCHHHHHHHHHHHCCCTT--CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-T
T ss_pred cchhhhHhhheeccCccc--ceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh-c
Confidence 345567778888765443 4899999999999877654 2478889977665555555443 2
Q ss_pred CCC---eEEEEeccccCCCCCCCeeEEEeccccccccc---------------C-hHHHHHHHHHcccCCcEEEEEeC
Q 009069 263 GVP---ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ---------------Y-DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 263 gv~---~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~---------------d-~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.. ..+...|.... .+...||+|+++.-+..-.. + ...++..+.+.|++||.+++..|
T Consensus 223 g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 223 GIGTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp TCCSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 321 23444444433 35678999999875521110 0 13589999999999999999977
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.20 E-value=0.00057 Score=62.07 Aligned_cols=98 Identities=14% Similarity=0.132 Sum_probs=62.6
Q ss_pred CEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC---CeEEEEecc---ccCCCCCCCeeEEEecc
Q 009069 220 RTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV---PALIGVMAS---IRLPYPSRAFDMAHCSR 290 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~---~~LPfpd~sFDlV~~~~ 290 (544)
.+|||+.||+|.++...+.+| ++.+|.+...+.....+ +..-+. ...+...|. .........||+|++-.
T Consensus 45 ~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~N-i~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKN-LQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-HHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred ceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhH-HhhhcccccccccccccccccccccccCCcccEEEech
Confidence 389999999999999999985 56677755433222222 222222 234444432 22334456799999977
Q ss_pred cccccccCh-HHHHHHHHH--cccCCcEEEEEeC
Q 009069 291 CLIPWGQYD-GLYLIEVDR--VLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~-~~~L~Ei~R--VLKPGG~Lvis~p 321 (544)
++..+. ...+..+.. +|+++|.+++..+
T Consensus 124 ---PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 124 ---PFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp ---CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ---hHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 444433 566666654 7999999999854
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.0013 Score=61.17 Aligned_cols=94 Identities=13% Similarity=-0.022 Sum_probs=63.2
Q ss_pred CEEEEeCCCCcHHHHHHhh----CCcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 220 RTAIDTGCGVASWGAYLMS----RNILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~----~~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
.++||+|+|.|--|.-|+- ..++.+|-...-. ....+.+.+-+. ++.+....++.+. .+.+||+|+|..+.
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~-~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA-- 142 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS--
T ss_pred CceeeeeccCCceeeehhhhcccceEEEEecchHHH-HHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhc--
Confidence 3899999999965555542 3567777644322 122233444455 5677766676654 45689999885432
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEe
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
....++.-+...+++||.+++--
T Consensus 143 ---~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 143 ---SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEEC
Confidence 35688888999999999999873
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.13 E-value=7.5e-05 Score=71.63 Aligned_cols=88 Identities=11% Similarity=0.125 Sum_probs=62.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
.++.|.+.+....++ +|||||||+|.++..|++. .++++++++.........+. ...++.+..+|+..++++..
T Consensus 17 ii~kIv~~~~~~~~d--~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~~~~ 92 (245)
T d1yuba_ 17 VLNQIIKQLNLKETD--TVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCSSE--EEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCCCC--eEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhh--hccchhhhhhhhhccccccc
Confidence 456777777666554 8999999999999999886 47777887755432211111 12357888889999999888
Q ss_pred CeeEEEecccccccc
Q 009069 282 AFDMAHCSRCLIPWG 296 (544)
Q Consensus 282 sFDlV~~~~~l~h~~ 296 (544)
.++.|+++.-+ +..
T Consensus 93 ~~~~vv~NLPY-~Is 106 (245)
T d1yuba_ 93 QRYKIVGNIPY-HLS 106 (245)
T ss_dssp SEEEEEEECCS-SSC
T ss_pred eeeeEeeeeeh-hhh
Confidence 88889888754 444
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.01 E-value=0.002 Score=63.37 Aligned_cols=111 Identities=19% Similarity=0.201 Sum_probs=69.6
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSR 281 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~ 281 (544)
...++...+++ +|||+.+|.|.=+..++.. .+++.|++..-+...... ..+.++ ++.+...|...++..+.
T Consensus 108 ~~~~l~~~~g~--~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~-~~r~~~~~i~~~~~d~~~~~~~~~ 184 (313)
T d1ixka_ 108 PPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLN-LSRLGVLNVILFHSSSLHIGELNV 184 (313)
T ss_dssp HHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH-HHHHTCCSEEEESSCGGGGGGGCC
T ss_pred hhhcccCCccc--eeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHH-HHHHHhhccccccccccccccccc
Confidence 33444445544 9999999999766666542 367788866544333222 223344 45555566666666678
Q ss_pred CeeEEEe----c--ccccc-----cccCh----------HHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHC----S--RCLIP-----WGQYD----------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~----~--~~l~h-----~~~d~----------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.||.|++ + ..+.. |.... ..+|..+.+.|||||+++.++-
T Consensus 185 ~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC 245 (313)
T d1ixka_ 185 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 245 (313)
T ss_dssp CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence 8999996 1 11111 11111 2678899999999999999975
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.91 E-value=0.0029 Score=57.51 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=71.4
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCC----
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLP---- 277 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LP---- 277 (544)
++++.+.+....+. .++|..+|.|..+..+++++ +.++|.++. +++.+.+.. ....+.......+.
T Consensus 7 l~Evl~~l~~~~g~--~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~-----ai~~a~~~~~~~~~~~~~~f~~~~~~l~ 79 (182)
T d1wg8a2 7 YQEALDLLAVRPGG--VYVDATLGGAGHARGILERGGRVIGLDQDPE-----AVARAKGLHLPGLTVVQGNFRHLKRHLA 79 (182)
T ss_dssp HHHHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTCCTTEEEEESCGGGHHHHHH
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHhcccCcEEEEhhhhh-----HHHHHhhccccceeEeehHHHHHHHHHH
Confidence 45566666655555 89999999999999999874 666776553 344444432 24566655433322
Q ss_pred -CCCCCeeEEEeccccccc--cc--C----hHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 -YPSRAFDMAHCSRCLIPW--GQ--Y----DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 -fpd~sFDlV~~~~~l~h~--~~--d----~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..+.+|.|+.-..+... .+ . ....|.....+|+|||.+++...
T Consensus 80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 334679999974433211 11 1 13578888999999999999864
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00053 Score=72.20 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=73.6
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----------------------CcEEEeCCccchHHHHHH
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----------------------NILAVSFAPRDTHEAQVQ 257 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----------------------~V~~vdisp~dls~a~v~ 257 (544)
.....++.+.+++....+. +|+|-.||+|.|.....++ .+.+.++.+....-+...
T Consensus 148 TP~~Iv~~mv~ll~~~~~~--~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~n 225 (524)
T d2ar0a1 148 TPRPLIKTIIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 225 (524)
T ss_dssp CCHHHHHHHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHH
T ss_pred cccchhHhhhhcccCccch--hhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 3455677788887655444 8999999999998665431 467888876555444444
Q ss_pred HHHHcCCCeE------EEEeccccC-CCCCCCeeEEEecccccccc------------cCh-HHHHHHHHHcccCCcEEE
Q 009069 258 FALERGVPAL------IGVMASIRL-PYPSRAFDMAHCSRCLIPWG------------QYD-GLYLIEVDRVLRPGGYWI 317 (544)
Q Consensus 258 ~A~ergv~~~------~~v~d~~~L-Pfpd~sFDlV~~~~~l~h~~------------~d~-~~~L~Ei~RVLKPGG~Lv 317 (544)
+.. ++.... +...+.... ......||+|+++.-+..-. .+. -.++..+.+.|+|||++.
T Consensus 226 l~l-~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a 304 (524)
T d2ar0a1 226 CLL-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 304 (524)
T ss_dssp HHT-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHh-hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence 332 232211 111111111 12346799999987441100 001 358999999999999999
Q ss_pred EEeC
Q 009069 318 LSGP 321 (544)
Q Consensus 318 is~p 321 (544)
+..|
T Consensus 305 iIlP 308 (524)
T d2ar0a1 305 VVVP 308 (524)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9977
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.0031 Score=61.12 Aligned_cols=110 Identities=12% Similarity=0.075 Sum_probs=70.4
Q ss_pred HHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCC
Q 009069 209 GKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPSRA 282 (544)
Q Consensus 209 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--fpd~s 282 (544)
..++....+ .+|||+++|.|+=+..|++. .+++.|+++.-+... .+...+.|+.....+.+..... ...+.
T Consensus 95 ~~~L~~~~g--~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l-~~~~~r~g~~~~~~~~~~~~~~~~~~~~~ 171 (284)
T d1sqga2 95 MTWLAPQNG--EHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRV-YDNLKRLGMKATVKQGDGRYPSQWCGEQQ 171 (284)
T ss_dssp HHHHCCCTT--CEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHH-HHHHHHTTCCCEEEECCTTCTHHHHTTCC
T ss_pred ccccCcccc--ceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhH-hhhhhcccccceeeeccccccchhccccc
Confidence 334444444 49999999999777666653 388899988766433 3444555766555544332221 34568
Q ss_pred eeEEEe----c--ccccc-------cccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 283 FDMAHC----S--RCLIP-------WGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 283 FDlV~~----~--~~l~h-------~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
||.|++ + ..+-. +... +..+|..+.+.|||||+++.++-
T Consensus 172 fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 172 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred ccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 999995 2 21211 1111 13688899999999999999975
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.73 E-value=0.00093 Score=63.81 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=65.0
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEe-c
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVM-A 272 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~-d 272 (544)
+.+...+.++.+...+.+.. +|+|+|||.|.++.+++.+ ++.++++.. +.++.-+.. ...+-+ +.+... +
T Consensus 49 SR~~~Kl~~~~~~~~~~~~~--~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~-d~~e~P~~~-~~~~~ni~~~~~~~d 124 (257)
T d2p41a1 49 SRGSAKLRWFVERNLVTPEG--KVVDLGCGRGGWSYYCGGLKNVREVKGLTKGG-PGHEEPIPM-STYGWNLVRLQSGVD 124 (257)
T ss_dssp STHHHHHHHHHHTTSSCCCE--EEEEETCTTSHHHHHHHTSTTEEEEEEECCCS-TTSCCCCCC-CSTTGGGEEEECSCC
T ss_pred chHHHHHHHHHHhcCccCCC--eEEEecCCCChHHHHHHhhcCCCceeEEEecC-ccccCCccc-cccccccccchhhhh
Confidence 34444555565555444433 7999999999999999876 345555521 221100000 000111 122211 2
Q ss_pred cccCCCCCCCeeEEEecccccccccCh-------HHHHHHHHHcccCCcEEEEEeC
Q 009069 273 SIRLPYPSRAFDMAHCSRCLIPWGQYD-------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 273 ~~~LPfpd~sFDlV~~~~~l~h~~~d~-------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
... .++...|+|+|-.+- . ..++ ..+|.-+.+.|+|||-|++-..
T Consensus 125 v~~--l~~~~~D~vlcDm~e-s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 125 VFF--IPPERCDTLLCDIGE-S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp TTT--SCCCCCSEEEECCCC-C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred HHh--cCCCcCCEEEeeCCC-C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence 222 346789999997642 2 2222 2566777789999999999754
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.012 Score=56.96 Aligned_cols=107 Identities=12% Similarity=0.032 Sum_probs=62.4
Q ss_pred HhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCC---C
Q 009069 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLPYPS---R 281 (544)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LPfpd---~ 281 (544)
++....+. +|||+++|.|+-+.+|++. .+.+.|+++.-+.. ..+.+.+.|+. +.+...|...+...+ +
T Consensus 89 ~L~~~~g~--~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~-l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~ 165 (293)
T d2b9ea1 89 LLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLAS-MATLLARAGVSCCELAEEDFLAVSPSDPRYH 165 (293)
T ss_dssp HHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHTTCCSEEEEECCGGGSCTTCGGGT
T ss_pred ccCCCccc--eEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHH-HHHHHHhcCccceeeeehhhhhhcccccccc
Confidence 34444444 8999999999877777653 37788886654432 23334445654 566666666554322 5
Q ss_pred CeeEEEe----ccc--ccc-----c--ccCh----------HHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHC----SRC--LIP-----W--GQYD----------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~----~~~--l~h-----~--~~d~----------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.||.|++ +.. +-. | ..+. ..++..+. .|+|||.++.++-
T Consensus 166 ~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTC 227 (293)
T d2b9ea1 166 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTC 227 (293)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEES
T ss_pred eeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeec
Confidence 7999995 211 100 1 0000 13444444 4799999999875
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.76 E-value=0.0091 Score=56.15 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=55.9
Q ss_pred EEEEeCCCCcHHHHHHhh--------CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC----CCCCCeeEEEe
Q 009069 221 TAIDTGCGVASWGAYLMS--------RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----YPSRAFDMAHC 288 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~--------~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP----fpd~sFDlV~~ 288 (544)
+||+||++.|..+..++. ..+.++|+.+.... .+......+.+..+|..... +....+|+|+-
T Consensus 83 ~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-----~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfI 157 (232)
T d2bm8a1 83 TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI 157 (232)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred EEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-----hhhccccceeeeecccccHHHHHHHHhcCCCEEEE
Confidence 799999999976655442 15888888553221 11122245777777754322 33556888875
Q ss_pred cccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-. - |.......-+ +....|++||++++.+.
T Consensus 158 D~-~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 158 DN-A-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp ES-S-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred cC-C-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 33 2 3222112222 46689999999999853
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.023 Score=54.72 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEeccccCCCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYP 279 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~LPfp 279 (544)
..++.|.+.+....++ .|||||+|.|.++..|+++ .++++++++.........+.... ...+.+..+|+....++
T Consensus 8 ~i~~kIv~~~~~~~~d--~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 8 LIINSIIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 85 (278)
T ss_dssp HHHHHHHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHHHhCCCCCC--EEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence 4566777777655544 8999999999999999986 57888886644432222221111 12577788887776654
Q ss_pred CCCeeEEEeccc
Q 009069 280 SRAFDMAHCSRC 291 (544)
Q Consensus 280 d~sFDlV~~~~~ 291 (544)
.++.|+++.-
T Consensus 86 --~~~~vV~NLP 95 (278)
T d1zq9a1 86 --FFDTCVANLP 95 (278)
T ss_dssp --CCSEEEEECC
T ss_pred --hhhhhhcchH
Confidence 3567887763
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.012 Score=56.00 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc---CCCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~er---gv~~~~~v~d~~~L 276 (544)
...++.|.+.+....++ .||+||||.|.++..|+++ .++++++++... +...++ ..++.+..+|+...
T Consensus 7 ~~~~~~Iv~~~~~~~~d--~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~-----~~L~~~~~~~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQ--AMVEIGPGLAALTEPVGERLDQLTVIELDRDLA-----ARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEEECCTTTTTHHHHHTTCSCEEEECCCHHHH-----HHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCchHHHHHHHccCCceEEEEeccchh-----HHHHHHhhhccchhHHhhhhhhh
Confidence 34667777777655544 8999999999999999987 678888855332 333222 23467777777665
Q ss_pred CC
Q 009069 277 PY 278 (544)
Q Consensus 277 Pf 278 (544)
.+
T Consensus 80 ~~ 81 (252)
T d1qyra_ 80 NF 81 (252)
T ss_dssp CH
T ss_pred cc
Confidence 43
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.028 Score=49.45 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=60.7
Q ss_pred HHhcccCCCCCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--------C
Q 009069 210 KLINLKDGSIRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------Y 278 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--------f 278 (544)
+...+++++ +||-+|+ |.|..+..+++. +..++.++. ++...+++++.|....+. ..... .
T Consensus 22 ~~~~~~~g~--~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi~---~~~~~~~~~i~~~t 93 (174)
T d1yb5a2 22 HSACVKAGE--SVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVFN---HREVNYIDKIKKYV 93 (174)
T ss_dssp TTSCCCTTC--EEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEE---TTSTTHHHHHHHHH
T ss_pred HHhCCCCCC--EEEEEeccccccccccccccccCcccccccc---cccccccccccCcccccc---cccccHHHHhhhhh
Confidence 333344444 8999997 356777777664 665555532 245567777777654332 22211 1
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..+.||+|+..- ....+....++|+|||.++..+
T Consensus 94 ~~~g~d~v~d~~--------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 94 GEKGIDIIIEML--------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp CTTCEEEEEESC--------HHHHHHHHHHHEEEEEEEEECC
T ss_pred ccCCceEEeecc--------cHHHHHHHHhccCCCCEEEEEe
Confidence 356799999643 2457888999999999999875
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.89 E-value=0.045 Score=47.60 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=61.3
Q ss_pred hcccCCCCCEEEEeCCC-CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC---------CCC
Q 009069 212 INLKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP---------YPS 280 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP---------fpd 280 (544)
...+.++ +||-+||| .|.++..+++. +..++-+ +.++...+++++.+....+......... ...
T Consensus 22 ~~~~~g~--~vlV~G~G~vG~~~~~~ak~~Ga~vi~v---~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 22 AGVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVVCT---ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred hCCCCCC--EEEEEcccccchhhHhhHhhhccccccc---chHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 3444544 89999998 56666666654 5444444 3345677788887765544322111100 013
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.+|+|+-.-. ....+..+.++|||||.+++.+.
T Consensus 97 ~g~D~vid~~g-------~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 97 DLPNVTIDCSG-------NEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SCCSEEEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred cCCceeeecCC-------ChHHHHHHHHHHhcCCceEEEec
Confidence 45898884321 25678889999999999999875
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.72 E-value=0.032 Score=55.89 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=62.8
Q ss_pred CEEEEeCCCCcHHHHHHhh-C---CcEEEeCCccchHHHHHHHHHHcCCC----------------eEEEEeccccCCC-
Q 009069 220 RTAIDTGCGVASWGAYLMS-R---NILAVSFAPRDTHEAQVQFALERGVP----------------ALIGVMASIRLPY- 278 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~-~---~V~~vdisp~dls~a~v~~A~ergv~----------------~~~~v~d~~~LPf- 278 (544)
.+|||..||+|..+.+.+. . .|++.|+++..+.....+.. .+++. +.+...|+..+..
T Consensus 47 ~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~-lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 47 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVM-LNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHH-HHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHH-hcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 4899999999999986543 3 46788888866654443333 23321 2233333322221
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
....||+|..-. +. .+..+|..+.|.++.||+|.++.
T Consensus 126 ~~~~fDvIDiDP----fG-s~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 126 RHRYFHFIDLDP----FG-SPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp STTCEEEEEECC----SS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCcCCcccCCC----CC-CcHHHHHHHHHHhccCCEEEEEe
Confidence 235699998643 33 35789999999999999999984
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.64 E-value=0.079 Score=47.77 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=62.9
Q ss_pred HHhcccCCCCCEEEEeCCCC-cHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCC------
Q 009069 210 KLINLKDGSIRTAIDTGCGV-ASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY------ 278 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPf------ 278 (544)
+...+++++ +||-+|||. |..+..+++. .|.++|. ++..+++|++.|....+ +....++
T Consensus 19 ~~a~v~~G~--tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~-----~~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~ 88 (195)
T d1kola2 19 VTAGVGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIVGDL-----NPARLAHAKAQGFEIAD---LSLDTPLHEQIAA 88 (195)
T ss_dssp HHTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEES-----CHHHHHHHHHTTCEEEE---TTSSSCHHHHHHH
T ss_pred HHhCCCCCC--EEEEECcCHHHHHHHHHHHhhcccceeeecc-----cchhhHhhhhccccEEE---eCCCcCHHHHHHH
Confidence 345566655 999999997 5566666653 3556665 34566788888754322 2211111
Q ss_pred --CCCCeeEEEecccc------ccc--ccChHHHHHHHHHcccCCcEEEEEe
Q 009069 279 --PSRAFDMAHCSRCL------IPW--GQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 279 --pd~sFDlV~~~~~l------~h~--~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
....+|+++-.-.. ++. .......|..+.+++||||.+++.+
T Consensus 89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 23468998853211 111 1112579999999999999999986
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.17 E-value=0.034 Score=48.66 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=57.3
Q ss_pred hcccCCCCCEEEEeCCC-CcHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCCCCeeEE
Q 009069 212 INLKDGSIRTAIDTGCG-VASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LPYPSRAFDMA 286 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-LPfpd~sFDlV 286 (544)
...++++ +||-+|+| .|.++..+++. | ++++|.++ ..++++++-|....+...+... ..-..+.||.|
T Consensus 23 ~~~~~g~--~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~-----~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~v 95 (168)
T d1piwa2 23 NGCGPGK--KVGIVGLGGIGSMGTLISKAMGAETYVISRSS-----RKREDAMKMGADHYIATLEEGDWGEKYFDTFDLI 95 (168)
T ss_dssp TTCSTTC--EEEEECCSHHHHHHHHHHHHHTCEEEEEESSS-----TTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEE
T ss_pred hCcCCCC--EEEEECCCCcchhHHHHhhhccccccccccch-----hHHHHhhccCCcEEeeccchHHHHHhhhcccceE
Confidence 3445544 89999998 66777777654 4 55555544 3445677777554332111100 11124579988
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..-...+ ...+....+.|+|||.+++.+.
T Consensus 96 i~~~~~~~-----~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 96 VVCASSLT-----DIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp EECCSCST-----TCCTTTGGGGEEEEEEEEECCC
T ss_pred EEEecCCc-----cchHHHHHHHhhccceEEEecc
Confidence 86322211 1124567899999999999853
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.07 E-value=0.07 Score=47.05 Aligned_cols=96 Identities=19% Similarity=0.338 Sum_probs=58.8
Q ss_pred HHhcccCCCCCEEEEeCCC-CcHHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---------cc
Q 009069 210 KLINLKDGSIRTAIDTGCG-VASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMAS---------IR 275 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~---------~~ 275 (544)
+..+.++++ +||-+|+| .|.++..+++. | |.++|. ++...+++++-|....+...+. .+
T Consensus 22 ~~~~~~~G~--~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~-----~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~ 94 (182)
T d1vj0a2 22 EYPESFAGK--TVVIQGAGPLGLFGVVIARSLGAENVIVIAG-----SPNRLKLAEEIGADLTLNRRETSVEERRKAIMD 94 (182)
T ss_dssp TCSSCCBTC--EEEEECCSHHHHHHHHHHHHTTBSEEEEEES-----CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHH
T ss_pred HHhCCCCCC--EEEEECCCccchhheeccccccccccccccc-----ccccccccccccceEEEeccccchHHHHHHHHH
Confidence 333444444 89999998 36677677664 4 445555 4556677877775443321111 01
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+ .....||+|+-.-. ....+....+.|+|||.+++.+
T Consensus 95 ~-~~~~g~Dvvid~vG-------~~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 95 I-THGRGADFILEATG-------DSRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp H-TTTSCEEEEEECSS-------CTTHHHHHHHHEEEEEEEEECC
T ss_pred h-hCCCCceEEeecCC-------chhHHHHHHHHhcCCCEEEEEe
Confidence 1 12345999985321 1356788999999999999875
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=91.89 E-value=0.071 Score=53.01 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=61.3
Q ss_pred CEEEEeCCCCcHHHHHHhhC--------------------CcEEEeCCccchHHHHHHHHHHcC-CCeEEEE---ecccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR--------------------NILAVSFAPRDTHEAQVQFALERG-VPALIGV---MASIR 275 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--------------------~V~~vdisp~dls~a~v~~A~erg-v~~~~~v---~d~~~ 275 (544)
-+|.|+||.+|..+..+... .|..-|+-.+|...-...+..... .+..|.. +....
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 46999999999554322110 345567777777544433322121 1222322 22333
Q ss_pred CCCCCCCeeEEEecccccccccC-h--------------------------------HHHHHHHHHcccCCcEEEEEeC
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQY-D--------------------------------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d-~--------------------------------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
--||+++.|++||+.++ ||... | ..+|+-=.+-|+|||.+++...
T Consensus 133 rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp CCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 34899999999999999 66431 0 1355555667899999999854
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.74 E-value=0.14 Score=44.99 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=61.1
Q ss_pred HHhcccCCCCCEEEEeCCCC-cHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-------
Q 009069 210 KLINLKDGSIRTAIDTGCGV-ASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------- 277 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP------- 277 (544)
+....++++ +||=+|||. |.++..+++. .|.++|. ++...+.+++-|....+. .....
T Consensus 21 ~~a~~~~g~--~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~-----~~~r~~~a~~lGa~~~i~---~~~~~~~~~v~~ 90 (174)
T d1jqba2 21 ELADIEMGS--SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS-----RPICVEAAKFYGATDILN---YKNGHIEDQVMK 90 (174)
T ss_dssp HHTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSCEEEECC-----CHHHHHHHHHHTCSEEEC---GGGSCHHHHHHH
T ss_pred HHhCCCCCC--EEEEEcCCcchhhhhhhhhcccccccccccc-----hhhhHHHHHhhCcccccc---ccchhHHHHHHH
Confidence 445556655 788899985 7777777774 4566665 345566777777543321 11111
Q ss_pred -CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 -YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 -fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.....||+|+-.-.. ...+.+..+.|||||.+++.+.
T Consensus 91 ~t~g~G~D~vid~~g~-------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 91 LTNGKGVDRVIMAGGG-------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp HTTTSCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECCC
T ss_pred HhhccCcceEEEccCC-------HHHHHHHHHHHhcCCEEEEEee
Confidence 123459998853311 3567888999999999999763
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.93 E-value=0.17 Score=44.27 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=58.8
Q ss_pred HHhcccCCCCCEEEEeCCCC-cHHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC-----CCC
Q 009069 210 KLINLKDGSIRTAIDTGCGV-ASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYP 279 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L-----Pfp 279 (544)
+....++++ +||=+|||. |..+..+++. + +.++|. ++...+++++.|....+. .+.... .+.
T Consensus 22 ~~~~~~~g~--~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~-----~~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 22 NALKVTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIAVDI-----VESRLELAKQLGATHVIN-SKTQDPVAAIKEIT 93 (174)
T ss_dssp TTTCCCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEEEES-----CHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHT
T ss_pred HhhCCCCCC--EEEEeCCCHHHhhhhhcccccccceeeeecc-----HHHHHHHHHHcCCeEEEe-CCCcCHHHHHHHHc
Confidence 334445544 899999984 3455555543 3 444554 345667777777543332 111110 022
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++.||+|+-.-. ....+.+..++|||+|.+++.+.
T Consensus 94 ~gg~D~vid~~G-------~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 94 DGGVNFALESTG-------SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp TSCEEEEEECSC-------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEEcCC-------cHHHHHHHHhcccCceEEEEEee
Confidence 457999984321 25788899999999999999764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.91 E-value=0.34 Score=41.86 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=59.7
Q ss_pred hcccCCCCCEEEEeCCCC-cHHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--------C
Q 009069 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------Y 278 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--------f 278 (544)
.+.++++ +||=+|+|. |.++..+++. + +.++|. ++...+++++.|....+... ..... -
T Consensus 22 ~~~~~gd--~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~-----~~~rl~~a~~~Ga~~~~~~~-~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 22 GGVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL-----SATRLSKAKEIGADLVLQIS-KESPQEIARKVEGQ 93 (171)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEES-----CHHHHHHHHHTTCSEEEECS-SCCHHHHHHHHHHH
T ss_pred hCCCCCC--EEEEECCCccHHHHHHHHHHcCCceEEeccC-----CHHHHHHHHHhCCccccccc-cccccccccccccc
Confidence 3445544 899999985 4555555543 3 555555 45677788887765444321 11100 0
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+|+|+..-. ....+....+.+|+||.+++.+.
T Consensus 94 ~g~g~Dvvid~~G-------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 94 LGCKPEVTIECTG-------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HTSCCSEEEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCCCceEEEeccC-------CchhHHHHHHHhcCCCEEEEEec
Confidence 1246899885331 25688999999999999999875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.47 E-value=0.18 Score=43.35 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=56.5
Q ss_pred hcccCCCCCEEEEeCCCC-cHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc---C-CCCCCCeeE
Q 009069 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR---L-PYPSRAFDM 285 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~---L-Pfpd~sFDl 285 (544)
...++++ +||=+|+|. |..+..+++. +..++-+ +.++...+++++-|....+...+... + ....+.+|.
T Consensus 23 ~~~~~g~--~VlV~GaG~vG~~~~~~ak~~G~~Vi~~---~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 23 TNARPGQ--WVAISGIGGLGHVAVQYARAMGLHVAAI---DIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred hCCCCCC--EEEEeeccccHHHHHHHHHHcCCcccee---cchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccc
Confidence 4455555 888899984 5566666554 5444444 33456667888777544332111000 0 011233455
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|.+.. ....+....+.|+|||.+++.+.
T Consensus 98 i~~~~--------~~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 98 LVTAV--------SNSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp EECCS--------CHHHHHHHHTTEEEEEEEEECCC
T ss_pred ccccc--------cchHHHHHHHHhcCCcEEEEEEe
Confidence 55433 14578889999999999999864
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.23 E-value=0.24 Score=45.68 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=37.3
Q ss_pred EEEEeccccC--CCCCCCeeEEEeccccc----cc------ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 267 LIGVMASIRL--PYPSRAFDMAHCSRCLI----PW------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 267 ~~~v~d~~~L--Pfpd~sFDlV~~~~~l~----h~------~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+.++|.... -++++++|+|++..-+. .| .+.....+.++.|+|||||.+++...
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 4555664332 36789999999866331 11 11125678899999999999999764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.50 E-value=0.13 Score=44.67 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=57.2
Q ss_pred HhcccCCCCCEEEEeCCC-CcHHHHHHhhC-Cc--EEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEE
Q 009069 211 LINLKDGSIRTAIDTGCG-VASWGAYLMSR-NI--LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMA 286 (544)
Q Consensus 211 lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-~V--~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV 286 (544)
....++++ +||=+|+| .|.++..+++. +. .+++..+ ...+++++-|....+...+........+.+|+|
T Consensus 25 ~~~~~~G~--~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~-----~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~v 97 (168)
T d1uufa2 25 HWQAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE-----AKREAAKALGADEVVNSRNADEMAAHLKSFDFI 97 (168)
T ss_dssp HTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEESSG-----GGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEE
T ss_pred HhCCCCCC--EEEEeccchHHHHHHHHhhcccccchhhccch-----hHHHHHhccCCcEEEECchhhHHHHhcCCCcee
Confidence 34455555 88889987 46677777664 54 3444422 234567676755443211111111223579998
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+-.-.. ...+....+.|+|||.+++.+.
T Consensus 98 id~~g~-------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 98 LNTVAA-------PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp EECCSS-------CCCHHHHHTTEEEEEEEEECCC
T ss_pred eeeeec-------chhHHHHHHHHhcCCEEEEecc
Confidence 853311 2346778899999999999753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=88.93 E-value=0.29 Score=43.01 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=61.2
Q ss_pred hcccCCCCCEEEEeCCCC-cHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-------CC
Q 009069 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-------YP 279 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP-------fp 279 (544)
...++++ +||=+|||. |.++..+++. .|.++|.++ ...+++++-|....+... ..... ..
T Consensus 24 a~v~~G~--~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~-----~r~~~a~~~Ga~~~i~~~-~~~~~~~~~~~~~~ 95 (174)
T d1e3ia2 24 AKVTPGS--TCAVFGLGCVGLSAIIGCKIAGASRIIAIDING-----EKFPKAKALGATDCLNPR-ELDKPVQDVITELT 95 (174)
T ss_dssp SCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG-----GGHHHHHHTTCSEEECGG-GCSSCHHHHHHHHH
T ss_pred hCCCCCC--EEEEECCChHHHHHHHHHHHhCCceeeeeccch-----HHHHHHHHhCCCcccCCc-cchhhhhhhHhhhh
Confidence 3444544 899999996 7777777764 355666644 355678777755443211 11101 12
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCC-cEEEEEeCC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPG-GYWILSGPP 322 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPG-G~Lvis~pp 322 (544)
.+.+|+|+-.- .....+.+..+.|+|| |.+++.+.+
T Consensus 96 ~~G~d~vie~~-------G~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 96 AGGVDYSLDCA-------GTAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp TSCBSEEEESS-------CCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred cCCCcEEEEec-------ccchHHHHHHHHhhcCCeEEEecCCC
Confidence 35689997422 1257899999999997 999998753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.85 E-value=0.39 Score=40.97 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=56.2
Q ss_pred hcccCCCCCEEEEeCCCC-cHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc---cCC-CCCCCeeE
Q 009069 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI---RLP-YPSRAFDM 285 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~---~LP-fpd~sFDl 285 (544)
...++++ +||=.|+|. |..+..+++. +..++.+ +.++...+++++.|....+...+.. .+. ...+.+|+
T Consensus 23 ~~~~~g~--~vlv~G~G~iG~~a~~~a~~~g~~v~~~---~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 23 TGAKPGE--WVAIYGIGGLGHVAVQYAKAMGLNVVAV---DIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp HTCCTTC--EEEEECCSTTHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEE
T ss_pred hCCCCCC--EEEEeecccchhhhhHHHhcCCCeEecc---CCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceE
Confidence 3445554 888899985 4555555553 5544444 3345566788777755433211100 000 11334555
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|.+.. ....+....+.|+|||.+++.+.
T Consensus 98 v~~~~--------~~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 98 VVTAV--------SKPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp EESSC--------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred EeecC--------CHHHHHHHHHHhccCCceEeccc
Confidence 54322 25778999999999999999864
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.50 E-value=0.38 Score=43.55 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=45.0
Q ss_pred CCCCCeeEEEeccccc----cccc---------ChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhh
Q 009069 278 YPSRAFDMAHCSRCLI----PWGQ---------YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQN 344 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~----h~~~---------d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~ 344 (544)
++++++|+|++..-.. .+.. .....+.++.|+|+|||.+++...+. . ..
T Consensus 19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~--------------~----~~ 80 (256)
T d1g60a_ 19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPF--------------N----CA 80 (256)
T ss_dssp SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHH--------------H----HH
T ss_pred CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCch--------------h----hh
Confidence 5688999999866331 1111 01357889999999999998765311 1 12
Q ss_pred hHHHHHHhhcceeeeeeccEEEEeccCC
Q 009069 345 GIETIARSLCWKKLIQKKDLAIWQKPTN 372 (544)
Q Consensus 345 ~ie~la~~l~w~~v~~~~~~aIwqKP~~ 372 (544)
.+.......+|.... ..||.|+..
T Consensus 81 ~~~~~~~~~g~~~~~----~iiW~k~~~ 104 (256)
T d1g60a_ 81 FICQYLVSKGMIFQN----WITWDKRDG 104 (256)
T ss_dssp HHHHHHHHTTCEEEE----EEEECCCCS
T ss_pred hhhhhhhcccceeee----eeEeeeccc
Confidence 233445556675443 468998754
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.82 E-value=0.38 Score=41.73 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=58.1
Q ss_pred HHhcccCCCCCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC------CCC
Q 009069 210 KLINLKDGSIRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------YPS 280 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP------fpd 280 (544)
+...+++++ +||=.|. |.|.++..+++. +..++-++. +....+++++.|....+. .....+. ...
T Consensus 19 ~~~~~~~g~--~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~t~~ 92 (183)
T d1pqwa_ 19 EVGRLSPGE--RVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGD-SRSVDFADEILELTDG 92 (183)
T ss_dssp TTSCCCTTC--EEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEE-TTCSTHHHHHHHHTTT
T ss_pred HHhCCCCCC--EEEEECCCCCcccccchhhccccccceeeec---cccccccccccccccccc-CCccCHHHHHHHHhCC
Confidence 333344444 8998773 355777777764 555444422 234556777777654332 1111110 134
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..||+|+..-. ...+.++.++|+++|.++..+
T Consensus 93 ~g~d~v~d~~g--------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 93 YGVDVVLNSLA--------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp CCEEEEEECCC--------THHHHHHHHTEEEEEEEEECS
T ss_pred CCEEEEEeccc--------chHHHHHHHHhcCCCEEEEEc
Confidence 67999997442 357788899999999999875
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=86.44 E-value=0.63 Score=40.54 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=63.2
Q ss_pred HHHHhcccCCCCCEEEEeCCCC--cHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc----C-CCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGV--ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----L-PYP 279 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGt--G~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~----L-Pfp 279 (544)
+.+...+++++ +||=.|+|. |..+..|++. +..++.++. ++...+++++.|....+...+... + -..
T Consensus 21 l~~~~~v~~G~--~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~ 95 (182)
T d1v3va2 21 LLEVCGVKGGE--TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAFNYKTVNSLEEALKKAS 95 (182)
T ss_dssp HHTTTCCCSSC--EEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHC
T ss_pred HHHHhCCCCCC--EEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CHHHHHHHHhhhhhhhcccccccHHHHHHHHhh
Confidence 44444555555 899888755 4677777764 666666532 345667777777655443211100 0 013
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+.+|+|+-.- ....+.+..+.|+|||.+++.+
T Consensus 96 ~~Gvd~v~D~v--------G~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 96 PDGYDCYFDNV--------GGEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp TTCEEEEEESS--------CHHHHHHHGGGEEEEEEEEECC
T ss_pred cCCCceeEEec--------CchhhhhhhhhccCCCeEEeec
Confidence 45699998532 2468899999999999999975
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.57 E-value=0.52 Score=40.42 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=57.6
Q ss_pred hcccCCCCCEEEEeCCC--CcHHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC------CC
Q 009069 212 INLKDGSIRTAIDTGCG--VASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP------YP 279 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCG--tG~~a~~La~~-~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP------fp 279 (544)
...++++ +||=+||| .|..+..+++. + +.+++. ++...+++++.|....+. .+..... ..
T Consensus 23 ~~~~~g~--~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~-----~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~ 94 (170)
T d1jvba2 23 ASLDPTK--TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV-----REEAVEAAKRAGADYVIN-ASMQDPLAEIRRITE 94 (170)
T ss_dssp TTCCTTC--EEEEETTTSHHHHHHHHHHHHHTCCEEEEEES-----SHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTT
T ss_pred hCCCCCC--EEEEEeccccceeeeeeccccccccccccccc-----chhhHHHHHHcCCceeec-cCCcCHHHHHHHHhh
Confidence 4444544 89999974 44555555543 3 444444 345667777777553332 1111100 12
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+.||+|+..-. ....+..+.+.|+|||.+++.+.
T Consensus 95 ~~~~d~vid~~g-------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 95 SKGVDAVIDLNN-------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp TSCEEEEEESCC-------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred cccchhhhcccc-------cchHHHhhhhhcccCCEEEEecc
Confidence 456999986431 25777889999999999999863
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=82.96 E-value=0.57 Score=43.88 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=53.1
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccch--HHHHHHHHHHcC-------CCeEEEEecccc
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDT--HEAQVQFALERG-------VPALIGVMASIR 275 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dl--s~a~v~~A~erg-------v~~~~~v~d~~~ 275 (544)
.|.+.+.++.+...+|||.=||.|..+..|+.. .|+.++-++... -+..++.+.... .++.+..+|...
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~ 156 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH
Confidence 355556655555558999999999999999887 466666655321 111122222211 135777777433
Q ss_pred -CCCCCCCeeEEEecccc
Q 009069 276 -LPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 276 -LPfpd~sFDlV~~~~~l 292 (544)
+.-....||+|+.-..+
T Consensus 157 ~L~~~~~~~DvIYlDPMF 174 (250)
T d2oyra1 157 ALTDITPRPQVVYLDPMF 174 (250)
T ss_dssp HSTTCSSCCSEEEECCCC
T ss_pred HHhccCCCCCEEEECCCC
Confidence 44345679999987755
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.90 E-value=0.79 Score=40.32 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=55.2
Q ss_pred CCEEEEeCCC--CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCG--VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS---IRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCG--tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~---~~LPfpd~sFDlV~~~~~l 292 (544)
+.+||=.|.+ +|+++..|++. +..++..+.. +...+++++.|....+..-+. .......+.+|+|+-.-
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s---~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~v-- 106 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK---AAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV-- 106 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---TTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS--
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCCceEEecCc---hHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcC--
Confidence 4479988864 55888888864 5444443222 223345666665543321111 11122456799988533
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+..++|+|||.++..+.
T Consensus 107 ------gg~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 107 ------GGRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp ------TTTTHHHHHHTEEEEEEEEECSC
T ss_pred ------CchhHHHHHHHhCCCceEEEeec
Confidence 13568999999999999999865
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=82.08 E-value=1.5 Score=37.52 Aligned_cols=94 Identities=11% Similarity=-0.038 Sum_probs=58.3
Q ss_pred HhcccCCCCCEEEEeCCCC--cHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCC--------C
Q 009069 211 LINLKDGSIRTAIDTGCGV--ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY--------P 279 (544)
Q Consensus 211 lL~l~~g~~r~VLDIGCGt--G~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPf--------p 279 (544)
...+++++ +||=.|+|. |.++..+++. +..++-+ +.++...+++++.|....+. .....+ .
T Consensus 23 ~~~l~~g~--~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~---~~s~~k~~~~~~lGa~~vi~---~~~~d~~~~v~~~t~ 94 (179)
T d1qora2 23 TYEIKPDE--QFLFHAAAGGVGLIACQWAKALGAKLIGT---VGTAQKAQSALKAGAWQVIN---YREEDLVERLKEITG 94 (179)
T ss_dssp TSCCCTTC--EEEESSTTBHHHHHHHHHHHHHTCEEEEE---ESSHHHHHHHHHHTCSEEEE---TTTSCHHHHHHHHTT
T ss_pred HhCCCCCC--EEEEEccccccchHHHHHHHHhCCeEeec---ccchHHHHHHHhcCCeEEEE---CCCCCHHHHHHHHhC
Confidence 33444444 899887664 5777777765 5444444 23455566777777554332 222111 3
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
...+|+|+..-. ...+......|+++|.+++.+
T Consensus 95 g~g~d~v~d~~g--------~~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 95 GKKVRVVYDSVG--------RDTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp TCCEEEEEECSC--------GGGHHHHHHTEEEEEEEEECC
T ss_pred CCCeEEEEeCcc--------HHHHHHHHHHHhcCCeeeecc
Confidence 467999986441 245788999999999988864
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.45 E-value=1.5 Score=42.14 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcccC----CCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCcc
Q 009069 202 DAYIDDIGKLINLKD----GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPR 249 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~----g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~ 249 (544)
...++.|.+.+.+.. ....+|||||.|.|.++..|.++ .++++++++.
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~ 78 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSS 78 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHH
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHH
Confidence 345667777765432 23458999999999999999764 4888888664
|