Citrus Sinensis ID: 009098

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---
MASFVSYSVQRLFRPSASTKTFISLVLQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNHPAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPTSYRPLQPNNSFPIRGSNGSVMHGDPPASSGPGNPVSTTAQKPFIPSYRLFEDLNVLGSADARLKMTSSSSPSLSGTSGQGMVGGRK
cHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHEEEcccHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccc
MASFVSYSVqrlfrpsastKTFISLVLQPDMQLRDKILVLLDSWqeafggpggkhpqyyWAYEDLRRYgvqfpkrspdaapiftppvshptlgqaqasygmpsnssrrldeTMATEVETLSFSSLDSMRDVMELLSDMLQavnpsdreavkDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHdaiasglpiptevtnlspkpneacaasslkstdagdssptpngnhpapvaSVTRALIDEEEEEEDDFALLARrhsmpkpgpsqntsaetggalvpvsnsnatsslpaatpsnalalpdppapvrtskeqDIIDLLSITlsttstsphtphtppissqstqqvpapsstqgnpyaseaypgnqgqvpynnyvapwaqpqsqplpqsqpqfqpgvqpqyphyssayppppwaptpgyfnnqnnlagannmfsstranmptsyrplqpnnsfpirgsngsvmhgdppassgpgnpvsttaqkpfipsyrlfedlNVLGSADARlkmtsssspslsgtsgqgmvggrk
masfvsysvqrlfrpsastKTFISLVLQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQavnpsdreavkdEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGdssptpngnhpapVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPTSYRPLQPNNSFPIRGSNGSVMHGDPPASSGPGNPVSTTAQKPFIPSYRLFEDLNVLGSADARLKmtsssspslsgtsgqgmvggrk
MASFVSYSVQRLFRPSASTKTFISLVLQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMltttgdeellgrglelNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNHPAPVASVTRALIdeeeeeeddFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEqdiidllsitlsttstsphtphtppissqstqqVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAqpqsqplpqsqpqfqpGVqpqyphyssayppppwaptpgyFnnqnnlagannMFSSTRANMPTSYRPLQPNNSFPIRGSNGSVMHGDPPASSGPGNPVSTTAQKPFIPSYRLFEDLNVLGSADARLKMtsssspslsgtsgQGMVGGRK
******YSVQRLFRPSASTKTFISLVLQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQF******************************************************************************KDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPI***********************************************************************************************************************************************************************************NYV*************************************************************************************************************FIPSYRLFEDLNVL******************************
MASFVSYSVQRLFRPSASTKTFISLVLQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYG**********************************************************MRDVMELLSD******************VDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAI***************************************************************************************************************************************************************************************************************************************************************************************************************LFEDLNV*******************************
MASFVSYSVQRLFRPSASTKTFISLVLQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAPIFTPPVSHPTLGQ****************ETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPK************************NHPAPVASVTRALIDEEEEEEDDFALLARRHS*************TGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLST******************************PYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPTSYRPLQPNNSFPIRGSNGSVMH************VSTTAQKPFIPSYRLFEDLNVLGSADARL***********************
MASFVSYSVQRLFRPSASTKTFISLVLQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAPIF*P*********************************TLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIAS**************************************************************************************************************************************************************************************************************************YP*************************************************************************KPFIPSYRLFEDLNVLGSA***************************
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MASFVSYSVQRLFRPSASTKTFISLVLQPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNHPAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPTSYRPLQPNNSFPIRGSNGSVMHGDPPASSGPGNPVSTTAQKPFIPSYRLFEDLNVLGSADARLKMTSSSSPSLSGTSGQGMVGGRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query543 2.2.26 [Sep-21-2011]
Q68FJ8507 TOM1-like protein 2 OS=Xe N/A no 0.337 0.360 0.252 4e-10
Q5SRX1507 TOM1-like protein 2 OS=Mu yes no 0.337 0.360 0.25 7e-09
Q6ZVM7507 TOM1-like protein 2 OS=Ho yes no 0.337 0.360 0.263 1e-08
O88746492 Target of Myb protein 1 O no no 0.364 0.402 0.253 9e-08
O60784492 Target of Myb protein 1 O no no 0.305 0.337 0.259 1e-06
O75674476 TOM1-like protein 1 OS=Ho no no 0.418 0.476 0.236 5e-05
O12940515 Target of Myb protein 1 O no no 0.331 0.349 0.25 0.0003
>sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1 Back     alignment and function desciption
 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 43/226 (19%)

Query: 13  FRPSASTKTFISLVL--------QPDMQLRDKILVLLDSWQEAFGG----PGGKHPQYYW 60
           F    + + FI  +L         P   ++DK+L L+ +W +AF       G  H     
Sbjct: 85  FHVQVTHRDFIDGILVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVH----- 139

Query: 61  AYEDLRRYGVQFPKRSPDA-APIFTPPVS----------HPTLGQAQASYGMPSNSS--- 106
            YE+L+R G++FP    DA +PI TP  S          H +  Q + S+   SNS    
Sbjct: 140 IYEELKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQKRDSFSNLSNSKSTS 199

Query: 107 ----------RRLDETMATEVETLSF--SSLDSMRDVMELLSDMLQAVNPSDREAVKDEV 154
                       +   ++   E +    S LD +R  ++++S+ML  + P    A   E+
Sbjct: 200 TPYTAPGGPPPNVGGPISANSEQIGRLRSELDIVRGNVKVMSEMLTEMTPGQEGASDLEL 259

Query: 155 IVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 200
           + DL   CR+ Q++++++++   +EE+    L +ND L N+  +++
Sbjct: 260 LQDLNRTCRTMQERIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 305
Probable role in protein transport.
Xenopus laevis (taxid: 8355)
>sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1 Back     alignment and function description
>sp|O88746|TOM1_MOUSE Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1 Back     alignment and function description
>sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2 Back     alignment and function description
>sp|O75674|TM1L1_HUMAN TOM1-like protein 1 OS=Homo sapiens GN=TOM1L1 PE=1 SV=2 Back     alignment and function description
>sp|O12940|TOM1_CHICK Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
297735580592 unnamed protein product [Vitis vinifera] 0.928 0.851 0.625 1e-157
225439610625 PREDICTED: uncharacterized protein LOC10 0.928 0.806 0.625 1e-157
255586353 734 protein transporter, putative [Ricinus c 0.666 0.493 0.702 1e-133
449439821 689 PREDICTED: target of Myb protein 1-like 0.688 0.542 0.670 1e-124
449483742591 PREDICTED: uncharacterized protein LOC10 0.685 0.629 0.674 1e-124
224087835635 predicted protein [Populus trichocarpa] 0.644 0.551 0.648 1e-119
224139312 654 predicted protein [Populus trichocarpa] 0.646 0.536 0.670 1e-117
356566755 740 PREDICTED: ADP-ribosylation factor-bindi 0.670 0.491 0.594 1e-105
357506521 731 Class E vacuolar protein-sorting machine 0.675 0.502 0.598 1e-103
356530201529 PREDICTED: TOM1-like protein 2-like [Gly 0.583 0.599 0.625 8e-98
>gi|297735580|emb|CBI18074.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 330/528 (62%), Positives = 397/528 (75%), Gaps = 24/528 (4%)

Query: 30  DMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAPIFTPPVSH 89
           DMQ+R+KIL LLDSWQEAFGGPGGKHPQYYWAYE+LRR GV+FPKRS DAAPIFTPPV+H
Sbjct: 75  DMQVREKILALLDSWQEAFGGPGGKHPQYYWAYEELRRAGVEFPKRSLDAAPIFTPPVTH 134

Query: 90  PTLGQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREA 149
           P +   Q+ YGMPSNS+RRLDE MA+E+E++S +S+DSM++VM+LL+DMLQAV+PSD +A
Sbjct: 135 PIVRHPQSGYGMPSNSTRRLDEAMASEMESVSLASMDSMQEVMQLLADMLQAVDPSDHQA 194

Query: 150 VKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIP 209
           VKDEVIVDLV++CR+NQK+LMQMLT+TGDEELLGRGLELND LQ+LLAKHDAI SG P+P
Sbjct: 195 VKDEVIVDLVNQCRANQKRLMQMLTSTGDEELLGRGLELNDGLQSLLAKHDAILSGSPLP 254

Query: 210 TEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNHPAPVASVTRALIDEEEEEEDDFALL 269
             VTN SP+  +   +SSLK  +  ++ P  N +   PVA+VT+   +EEE+EEDDFA L
Sbjct: 255 NLVTNFSPQQPD-IGSSSLKPAELKETLPRSNADPSTPVAAVTKVQAEEEEDEEDDFAQL 313

Query: 270 ARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAAT----PSNALA-LPDPPAPVRT 324
           ARRHS  +  PSQ+TS  T        ++N T+S+  A+    PSNALA +P  PAPV+T
Sbjct: 314 ARRHSKTRATPSQSTSTGT------SDSTNITTSITPASSTSDPSNALAVVPVSPAPVKT 367

Query: 325 SKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQV 384
           +KEQD+IDLLS+TLST STS  T      S+ S QQVP  ++TQ  PY+S AY GNQGQV
Sbjct: 368 TKEQDMIDLLSLTLSTISTSHETQPPSSASNPSLQQVPVSTTTQEYPYSSAAYSGNQGQV 427

Query: 385 PYNNYVAPWA---QPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNL 441
           PY+NYV PWA   Q QSQP PQ QPQ Q   + QYP YS  YPPPPWA TPGY N   N 
Sbjct: 428 PYSNYVVPWAQPQQTQSQPQPQPQPQPQIQPRTQYPQYSYGYPPPPWAATPGYSN--QNP 485

Query: 442 AGANNMFSSTRANMPTSY------RPLQPNNSFPIRGSNGSVMHGDPPASSGPGNPVSTT 495
           + +  M+S+ + N  TSY      RPLQ  NSF  +G+NG  M+GD     GP NPV  +
Sbjct: 486 SSSGYMYSTLQVNTNTSYMPMQGPRPLQQYNSFSSKGNNGLAMNGDGRV-PGPRNPVPAS 544

Query: 496 AQKPFIPSYRLFEDLNVLGSADARLKMTSSSSPSLSGTSGQGMVGGRK 543
             KPFIPSYRLFEDLNVLG+ D RLKMTSS+SPSLSGTS QGMVGGRK
Sbjct: 545 GNKPFIPSYRLFEDLNVLGNTDGRLKMTSSASPSLSGTSSQGMVGGRK 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439610|ref|XP_002267147.1| PREDICTED: uncharacterized protein LOC100267076 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255586353|ref|XP_002533826.1| protein transporter, putative [Ricinus communis] gi|223526243|gb|EEF28561.1| protein transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449439821|ref|XP_004137684.1| PREDICTED: target of Myb protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449483742|ref|XP_004156676.1| PREDICTED: uncharacterized protein LOC101230918 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224087835|ref|XP_002308242.1| predicted protein [Populus trichocarpa] gi|222854218|gb|EEE91765.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224139312|ref|XP_002323050.1| predicted protein [Populus trichocarpa] gi|222867680|gb|EEF04811.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356566755|ref|XP_003551594.1| PREDICTED: ADP-ribosylation factor-binding protein GGA1-like [Glycine max] Back     alignment and taxonomy information
>gi|357506521|ref|XP_003623549.1| Class E vacuolar protein-sorting machinery protein HSE1 [Medicago truncatula] gi|355498564|gb|AES79767.1| Class E vacuolar protein-sorting machinery protein HSE1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356530201|ref|XP_003533672.1| PREDICTED: TOM1-like protein 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
TAIR|locus:2057140671 AT2G38410 [Arabidopsis thalian 0.405 0.327 0.531 2.3e-100
TAIR|locus:2180982542 AT5G01760 [Arabidopsis thalian 0.524 0.525 0.421 3.4e-56
TAIR|locus:2077808607 AT3G08790 [Arabidopsis thalian 0.488 0.436 0.319 1.8e-34
TAIR|locus:2027037506 AT1G21380 [Arabidopsis thalian 0.340 0.365 0.404 5.2e-33
TAIR|locus:2025297446 AT1G76970 "AT1G76970" [Arabido 0.329 0.401 0.402 2.3e-30
TAIR|locus:2160654447 AT5G63640 [Arabidopsis thalian 0.388 0.472 0.298 1.3e-17
ZFIN|ZDB-GENE-060721-1476 tom1 "target of myb1 (chicken) 0.515 0.588 0.215 2.8e-08
UNIPROTKB|E1BEE0500 TOM1L2 "Uncharacterized protei 0.545 0.592 0.238 4e-08
UNIPROTKB|A5PK10390 TOM1L2 "Uncharacterized protei 0.346 0.482 0.262 8.9e-08
MGI|MGI:2443306507 Tom1l2 "target of myb1-like 2 0.152 0.163 0.348 6.5e-07
TAIR|locus:2057140 AT2G38410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 501 (181.4 bits), Expect = 2.3e-100, Sum P(4) = 2.3e-100
 Identities = 127/239 (53%), Positives = 147/239 (61%)

Query:    93 GQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKD 152
             G  Q  YGMPS SSRRLDE MATEVE LS SS++SMRDVM+LL DMLQAV+PSDREAVKD
Sbjct:   206 GIPQVGYGMPSGSSRRLDEAMATEVEGLSLSSIESMRDVMDLLGDMLQAVDPSDREAVKD 265

Query:   153 EVIVDLVSRCRSNQKKLMQMXXXXXXXXXXXXXXXXNDILQNLLAKHDAIASGLPIPTEV 212
             EVIVDLV RCRSNQKKLMQM                ND LQ LLAKHDAIASG P+P + 
Sbjct:   266 EVIVDLVERCRSNQKKLMQMLTSTGDDELLGRGLDLNDSLQILLAKHDAIASGSPLPVQA 325

Query:   213 TNLSPKPNEAC--AASSLKSTDAGDSSPTPNGNHPAPVA-SVTRALIXXXXXXXXX-FAL 268
             +  SP   +A   A SS KS++A DSS     + P P   S  ++ I          FA 
Sbjct:   326 SG-SPLSVQASKPADSSPKSSEAKDSSSIAGSSSPIPATVSTGKSPIDEEYEEEEDEFAQ 384

Query:   269 LARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKE 327
             LARRHS P   P+  T+  T      + + NA S+      + ALALPDPP PV T+KE
Sbjct:   385 LARRHSKP---PASVTTDPTS-----LESHNAASN------ALALALPDPPPPVNTTKE 429
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005795 "Golgi stack" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS
GO:0008565 "protein transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2180982 AT5G01760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077808 AT3G08790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027037 AT1G21380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025297 AT1G76970 "AT1G76970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160654 AT5G63640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060721-1 tom1 "target of myb1 (chicken)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEE0 TOM1L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A5PK10 TOM1L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2443306 Tom1l2 "target of myb1-like 2 (chicken)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037443001
SubName- Full=Chromosome chr8 scaffold_88, whole genome shotgun sequence; (625 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
pfam0312799 pfam03127, GAT, GAT domain 1e-19
cd03561133 cd03561, VHS, VHS domain family; The VHS domain is 5e-08
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 1e-06
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-05
smart00288133 smart00288, VHS, Domain present in VPS-27, Hrs and 3e-04
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 6e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.003
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.004
cd03565141 cd03565, VHS_Tom1, VHS domain family, Tom1 subfami 0.004
>gnl|CDD|190532 pfam03127, GAT, GAT domain Back     alignment and domain information 
 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query: 123 SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELL 182
           S L+ +++ ++LLS+MLQ  +P       DE++ +L  RCRS Q ++ +++  T DE+ L
Sbjct: 9   SELEEVKNNVKLLSEMLQEYDPGQESQSDDELLQELYERCRSMQPRIQRLIEETEDEDAL 68

Query: 183 GRGLELNDILQNLLAKHDAIASGLPIPTE 211
              L++ND L  +L +++ +  G    + 
Sbjct: 69  AELLQVNDDLNRVLNRYERLVKGRTGGSA 97

The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins. Length = 99
>gnl|CDD|239620 cd03561, VHS, VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|197630 smart00288, VHS, Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|239623 cd03565, VHS_Tom1, VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 543
KOG1087470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 100.0
KOG1086594 consensus Cytosolic sorting protein/ADP-ribosylati 100.0
PF03127100 GAT: GAT domain; InterPro: IPR004152 The GAT domai 99.87
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 99.74
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 99.74
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 99.72
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 99.68
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 99.54
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 99.47
cd03561133 VHS VHS domain family; The VHS domain is present i 99.43
KOG2199462 consensus Signal transducing adaptor protein STAM/ 99.36
KOG1818634 consensus Membrane trafficking and cell signaling 98.92
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 97.83
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 84.19
PF1221096 Hrs_helical: Hepatocyte growth factor-regulated ty 83.6
PRK04778569 septation ring formation regulator EzrA; Provision 81.29
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-47  Score=402.78  Aligned_cols=200  Identities=43%  Similarity=0.702  Sum_probs=171.0

Q ss_pred             CCchhHHHhhhcHHHHHHHHHhh-cC-CCHHHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCCCCCCCCCCC
Q 009098            4 FVSYSVQRLFRPSASTKTFISLV-LQ-PDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAP   81 (543)
Q Consensus         4 ~cgYpVH~eIAskeFLnELVKLI-pK-~~~~VreKILeLIQsWaeAF~~~~~klp~i~eaY~~LK~kGV~FP~~~~daaP   81 (543)
                      =|||.||.|||+|+||+||||++ .+ .+..||+|||.||++|+++|++..+|+++|+++|++|+++||+||.++.++.+
T Consensus        68 NCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G~~FP~r~~~sl~  147 (470)
T KOG1087|consen   68 NCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKGVEFPQRDEESLA  147 (470)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcCCcCCCCcccccc
Confidence            39999999999999999999999 66 77899999999999999999997788999999999999999999999999877


Q ss_pred             CCCCCC-CCCccchhhcccCCCCCCcch------hhhhh-hHHHhhhcHHHHHHHHHHHHHHHHHHHhcCCCCCccchhH
Q 009098           82 IFTPPV-SHPTLGQAQASYGMPSNSSRR------LDETM-ATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDE  153 (543)
Q Consensus        82 I~TPp~-S~Pe~~~a~~~~gSP~~~d~~------L~~sm-s~D~ekLS~sELevVrnNvkLLsEML~~~~Pg~~~~~ddE  153 (543)
                      +++|+. ..+..+..... +.+. +...      ....+ ..++..++++||++|++|++||+|||.++++++++..++|
T Consensus       148 ~~~pp~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~seLe~~~~~~~ll~emL~~v~p~~~e~~~~e  225 (470)
T KOG1087|consen  148 VLTPPAVLRPAPEPQEQS-GPPN-EANASMKSMAGYPTEATPEVSTLSLSELESVKGKADLLSEMLNAVDPSDEEAAKDE  225 (470)
T ss_pred             ccCCCCCCCCCCCchhhc-CCcc-ccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCcchhHHH
Confidence            776654 22221111011 1111 1111      11122 3467788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHhhhcCCHHHHHHhhhcchHHHHHHHHHHHHhcC
Q 009098          154 VIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASG  205 (543)
Q Consensus       154 LIqELyetCrsmQpRI~~LIeetsDEElL~eLL~lNDdLn~VL~RYd~i~sG  205 (543)
                      +|++|+++||.+|+|||+||++++||++|+++|++||+|++||.|||+|.+|
T Consensus       226 l~~~L~~qcr~~q~rv~~Li~~~~DE~ll~~lL~lND~L~~vL~~ye~~~~g  277 (470)
T KOG1087|consen  226 LLVDLVEQCRSKQRRVMHLIEETSDEELLCELLKLNDELQRVLERYERIASG  277 (470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999

>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3 Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS) Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 2e-28
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 5e-27
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 3e-21
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 4e-21
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 7e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 1e-08
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 3e-08
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 5e-08
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 7e-08
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 3e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-05
3g2s_A149 C-terminal fragment of sortilin-related receptor; 4e-05
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 1e-04
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 2e-04
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-04
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Length = 103 Back     alignment and structure
 Score =  108 bits (270), Expect = 2e-28
 Identities = 22/99 (22%), Positives = 49/99 (49%)

Query: 113 MATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQM 172
           + +E      S L+ +   + ++S+ML  + P+  E    E++ +L   CR+ Q++++++
Sbjct: 3   LGSEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLEL 62

Query: 173 LTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTE 211
           +    +E+L    L +ND L N+  +H+         T 
Sbjct: 63  IPQIANEQLTEELLIVNDNLNNVFLRHERFERFRTGQTT 101
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Length = 111 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Length = 140 Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 158 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Length = 171 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Length = 163 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} Length = 140 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Length = 148 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Length = 157 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Length = 149 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query543
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 99.92
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 99.91
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 99.89
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 99.89
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 99.89
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 99.79
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 99.79
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 99.77
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 99.76
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 99.74
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 99.7
3g2s_A149 C-terminal fragment of sortilin-related receptor; 99.7
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 99.6
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 99.6
2pjw_H88 Uncharacterized protein YHL002W; GAT domain, core 97.37
2pjw_V91 Vacuolar protein sorting-associated protein 27; GA 96.55
3f1i_H98 Hepatocyte growth factor-regulated tyrosine kinas 86.74
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
Probab=99.92  E-value=3.1e-25  Score=193.62  Aligned_cols=93  Identities=23%  Similarity=0.349  Sum_probs=86.2

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHhHHHHHHHhhhcCCHHHHHHhhhcchHHHHH
Q 009098          116 EVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNL  195 (543)
Q Consensus       116 D~ekLS~sELevVrnNvkLLsEML~~~~Pg~~~~~ddELIqELyetCrsmQpRI~~LIeetsDEElL~eLL~lNDdLn~V  195 (543)
                      ++.++.++||++|++|++||+|||++++|++....++|+|+|||++||+||+||++||++++||++|+++|++||+||+|
T Consensus         6 eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~v   85 (103)
T 1wrd_A            6 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNV   85 (103)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHHH
Confidence            33334489999999999999999999999998889999999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHhcCCCC
Q 009098          196 LAKHDAIASGLPI  208 (543)
Q Consensus       196 L~RYd~i~sG~~~  208 (543)
                      |.||++|++|...
T Consensus        86 l~ry~~~~~~~~~   98 (103)
T 1wrd_A           86 FLRHERFERFRTG   98 (103)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHhcCCCC
Confidence            9999999988754
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 543
d1wrda193 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 6e-25
d1wr6a190 a.7.8.1 (A:211-300) ADP-ribosylation factor bindin 3e-24
d1o3xa_112 a.7.8.1 (A:) ADP-ribosylation factor binding prote 1e-22
d1dvpa1145 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila mel 4e-09
d1elka_153 a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) 7e-08
d1juqa_151 a.118.9.2 (A:) ADP-ribosylation factor binding pro 1e-07
d1mhqa_143 a.118.9.2 (A:) ADP-ribosylation factor binding pro 3e-06
d1ujka_145 a.118.9.2 (A:) ADP-ribosylation factor binding pro 4e-05
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: Target of Myb protein 1, TOM1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.7 bits (241), Expect = 6e-25
 Identities = 20/78 (25%), Positives = 45/78 (57%)

Query: 123 SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELL 182
           S L+ +   + ++S+ML  + P+  E    E++ +L   CR+ Q+++++++    +E+L 
Sbjct: 8   SELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLT 67

Query: 183 GRGLELNDILQNLLAKHD 200
              L +ND L N+  +H+
Sbjct: 68  EELLIVNDNLNNVFLRHE 85
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145 Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query543
d1wrda193 Target of Myb protein 1, TOM1 {Human (Homo sapiens 99.91
d1wr6a190 ADP-ribosylation factor binding protein Gga3 {Huma 99.9
d1o3xa_112 ADP-ribosylation factor binding protein Gga1 {Huma 99.89
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 99.71
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 99.68
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 99.67
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 99.66
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 99.6
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: Target of Myb protein 1, TOM1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-25  Score=188.69  Aligned_cols=86  Identities=23%  Similarity=0.417  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHhHHHHHHHhhhcCCHHHHHHhhhcchHHHHHHHHHHH
Q 009098          122 FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDA  201 (543)
Q Consensus       122 ~sELevVrnNvkLLsEML~~~~Pg~~~~~ddELIqELyetCrsmQpRI~~LIeetsDEElL~eLL~lNDdLn~VL~RYd~  201 (543)
                      ++||++|++|++||+|||++++|++.+..++|+|+|||++||+||+||++||+.++||++|+++|++||+|++||.||++
T Consensus         7 ~~eLe~v~~n~~lL~eML~~~~p~~~~~~d~eli~eL~~~C~~~q~~i~~li~~~~dee~l~~lL~~ND~L~~vl~ry~r   86 (93)
T d1wrda1           7 RSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNVFLRHER   86 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCC
Q 009098          202 IASGLP  207 (543)
Q Consensus       202 i~sG~~  207 (543)
                      |.+++.
T Consensus        87 ~~k~r~   92 (93)
T d1wrda1          87 FERFRT   92 (93)
T ss_dssp             HHHHHC
T ss_pred             HHhccc
Confidence            998764
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure